Query 033475
Match_columns 118
No_of_seqs 114 out of 1040
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.3E-39 4.9E-44 224.5 9.6 100 14-117 6-106 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.9E-39 4.2E-44 221.3 8.1 98 15-117 3-101 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 5.1E-36 1.1E-40 200.4 7.6 103 10-117 1-104 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 6.7E-35 1.4E-39 203.0 11.0 98 14-116 3-101 (152)
5 PLN00172 ubiquitin conjugating 100.0 4.7E-34 1E-38 197.7 11.0 97 15-116 3-100 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 6.8E-33 1.5E-37 195.0 7.8 99 14-116 4-106 (200)
7 KOG0424 Ubiquitin-protein liga 100.0 5E-32 1.1E-36 183.5 8.7 103 13-115 4-109 (158)
8 PF00179 UQ_con: Ubiquitin-con 100.0 1.1E-31 2.4E-36 183.9 6.6 96 17-116 1-98 (140)
9 KOG0425 Ubiquitin-protein liga 100.0 7.9E-31 1.7E-35 179.9 9.4 89 15-107 7-96 (171)
10 KOG0421 Ubiquitin-protein liga 100.0 1.5E-30 3.2E-35 176.6 7.5 96 13-113 29-125 (175)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 4.5E-30 9.8E-35 176.1 9.5 96 16-116 2-99 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 1.8E-29 3.9E-34 169.2 9.1 92 11-106 2-94 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 9E-29 2E-33 170.4 10.5 96 16-115 1-98 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1.5E-28 3.2E-33 164.6 9.5 112 1-117 1-115 (161)
15 KOG0422 Ubiquitin-protein liga 99.9 6.4E-28 1.4E-32 162.8 7.6 95 14-113 3-99 (153)
16 KOG0420 Ubiquitin-protein liga 99.9 6E-27 1.3E-31 162.9 5.9 102 11-117 26-129 (184)
17 KOG0416 Ubiquitin-protein liga 99.9 2.9E-26 6.3E-31 159.3 5.9 93 15-114 5-98 (189)
18 KOG0423 Ubiquitin-protein liga 99.9 2.2E-25 4.8E-30 155.6 4.4 104 6-114 3-107 (223)
19 KOG0894 Ubiquitin-protein liga 99.9 9.7E-23 2.1E-27 146.5 10.0 98 11-114 3-103 (244)
20 KOG0428 Non-canonical ubiquiti 99.8 3.6E-19 7.8E-24 130.5 8.8 99 9-114 7-108 (314)
21 KOG0896 Ubiquitin-conjugating 99.6 4.9E-16 1.1E-20 104.6 7.1 104 10-113 2-108 (138)
22 KOG0429 Ubiquitin-conjugating 99.5 5.4E-14 1.2E-18 101.9 8.1 92 14-110 20-114 (258)
23 KOG0895 Ubiquitin-conjugating 99.4 7.1E-13 1.5E-17 112.5 9.7 102 6-112 275-387 (1101)
24 KOG0895 Ubiquitin-conjugating 99.4 1.1E-13 2.5E-18 117.3 4.4 88 14-106 852-942 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 97.2 0.00082 1.8E-08 45.6 5.2 40 62-102 34-76 (133)
26 KOG0897 Predicted ubiquitin-co 96.6 0.00074 1.6E-08 44.8 0.6 48 67-114 14-63 (122)
27 PF08694 UFC1: Ubiquitin-fold 96.5 0.0018 3.8E-08 44.7 2.2 78 14-102 25-113 (161)
28 PF05773 RWD: RWD domain; Int 96.2 0.032 6.9E-07 35.7 6.9 69 16-89 4-74 (113)
29 PF05743 UEV: UEV domain; Int 96.0 0.012 2.7E-07 39.4 4.2 60 46-111 32-99 (121)
30 KOG3357 Uncharacterized conser 95.3 0.026 5.7E-07 38.4 3.7 85 14-109 28-125 (167)
31 smart00591 RWD domain in RING 94.8 0.14 3E-06 32.4 5.9 26 63-88 40-65 (107)
32 KOG2391 Vacuolar sorting prote 92.5 0.19 4.1E-06 39.3 3.9 72 35-112 41-120 (365)
33 PF14462 Prok-E2_E: Prokaryoti 84.2 3.1 6.6E-05 28.0 4.8 41 48-89 25-67 (122)
34 KOG0309 Conserved WD40 repeat- 83.0 8.2 0.00018 33.8 7.8 68 15-87 422-490 (1081)
35 smart00340 HALZ homeobox assoc 76.5 2.4 5.3E-05 23.2 1.9 15 14-28 20-34 (44)
36 PF09765 WD-3: WD-repeat regio 76.0 12 0.00026 28.7 6.3 61 12-85 98-158 (291)
37 KOG4018 Uncharacterized conser 71.7 4.1 8.8E-05 30.0 2.6 20 65-84 50-69 (215)
38 cd00421 intradiol_dioxygenase 66.6 10 0.00022 25.8 3.7 25 63-87 65-90 (146)
39 PF08203 RNA_polI_A14: Yeast R 64.2 3.7 8E-05 25.4 1.0 21 5-25 51-71 (76)
40 PF03366 YEATS: YEATS family; 61.8 36 0.00079 21.1 5.3 41 47-89 2-42 (84)
41 cd03457 intradiol_dioxygenase_ 59.1 16 0.00036 26.2 3.7 25 63-87 86-110 (188)
42 cd03459 3,4-PCD Protocatechuat 57.1 19 0.00041 25.1 3.7 25 63-87 72-101 (158)
43 KOG4445 Uncharacterized conser 54.9 16 0.00035 28.5 3.2 25 64-88 45-69 (368)
44 PF14457 Prok-E2_A: Prokaryoti 51.0 14 0.0003 25.9 2.2 29 68-96 57-88 (162)
45 PF06113 BRE: Brain and reprod 49.7 29 0.00062 27.4 3.9 28 63-91 305-332 (333)
46 TIGR02423 protocat_alph protoc 46.6 32 0.0007 24.8 3.6 25 63-87 96-125 (193)
47 PF14455 Metal_CEHH: Predicted 45.5 55 0.0012 23.1 4.4 39 48-88 38-76 (177)
48 PF09606 Med15: ARC105 or Med1 44.9 7.2 0.00016 34.1 0.0 25 65-89 715-739 (799)
49 cd03463 3,4-PCD_alpha Protocat 42.1 42 0.00092 24.0 3.6 25 63-87 92-121 (185)
50 PF12065 DUF3545: Protein of u 39.6 21 0.00046 21.0 1.4 14 15-28 36-49 (59)
51 PF10069 DICT: Sensory domain 37.2 1.2E+02 0.0027 20.0 5.2 16 12-27 56-71 (129)
52 KOG3696 Aspartyl beta-hydroxyl 36.8 28 0.00062 27.2 2.1 39 59-97 282-326 (334)
53 PF14460 Prok-E2_D: Prokaryoti 33.0 24 0.00053 24.8 1.2 15 87-102 90-107 (175)
54 TIGR02439 catechol_proteo cate 32.2 70 0.0015 24.6 3.6 25 63-87 180-222 (285)
55 PF04904 NCD1: NAB conserved r 32.0 53 0.0011 20.4 2.4 24 6-30 55-78 (82)
56 cd05845 Ig2_L1-CAM_like Second 31.7 72 0.0016 20.2 3.1 25 62-88 17-41 (95)
57 PF06113 BRE: Brain and reprod 31.6 72 0.0016 25.2 3.6 34 60-93 61-95 (333)
58 PF00845 Gemini_BL1: Geminivir 31.5 1.1E+02 0.0024 23.3 4.4 44 48-91 104-155 (276)
59 PF08675 RNA_bind: RNA binding 30.4 47 0.001 21.0 2.0 20 55-76 1-20 (87)
60 PF06305 DUF1049: Protein of u 30.2 41 0.0009 19.3 1.7 15 14-28 49-63 (68)
61 cd03461 1,2-HQD Hydroxyquinol 29.1 85 0.0018 24.0 3.6 25 63-87 172-214 (277)
62 PF08872 KGK: KGK domain; Int 28.8 1.2E+02 0.0027 20.0 3.9 24 49-72 67-92 (114)
63 PF09458 H_lectin: H-type lect 28.3 90 0.002 18.0 3.0 22 65-87 2-23 (72)
64 cd03464 3,4-PCD_beta Protocate 28.3 93 0.002 23.0 3.6 24 63-86 122-152 (220)
65 cd03460 1,2-CTD Catechol 1,2 d 28.0 92 0.002 23.9 3.6 25 63-87 176-218 (282)
66 TIGR02438 catachol_actin catec 27.4 97 0.0021 23.8 3.6 25 63-87 184-226 (281)
67 TIGR02422 protocat_beta protoc 26.9 1E+02 0.0022 22.8 3.6 24 63-86 117-147 (220)
68 COG3866 PelB Pectate lyase [Ca 25.7 1.3E+02 0.0027 23.8 4.0 41 47-88 197-241 (345)
69 KOG1047 Bifunctional leukotrie 25.0 78 0.0017 26.9 2.9 29 60-89 249-280 (613)
70 PF02970 TBCA: Tubulin binding 24.1 51 0.0011 20.7 1.4 18 10-27 4-21 (90)
71 TIGR02465 chlorocat_1_2 chloro 23.7 1.3E+02 0.0028 22.6 3.7 24 63-86 150-191 (246)
72 PF09943 DUF2175: Uncharacteri 22.1 84 0.0018 20.5 2.1 20 48-69 2-21 (101)
73 PF15572 Imm26: Immunity prote 21.4 1.1E+02 0.0023 19.8 2.5 25 57-86 8-32 (96)
74 KOG3203 Mitochondrial/chloropl 21.1 56 0.0012 23.0 1.2 13 88-101 50-62 (165)
75 TIGR03737 PRTRC_B PRTRC system 21.0 53 0.0011 24.5 1.1 15 87-102 131-148 (228)
76 KOG1758 Mitochondrial F1F0-ATP 20.7 3.1E+02 0.0068 19.3 5.4 60 48-118 28-93 (159)
77 PF00779 BTK: BTK motif; Inte 20.2 27 0.00059 17.8 -0.4 11 89-100 2-12 (32)
78 PF02817 E3_binding: e3 bindin 20.1 65 0.0014 17.0 1.1 14 10-23 4-17 (39)
79 KOG3285 Spindle assembly check 20.1 2.7E+02 0.0059 20.2 4.5 56 13-83 119-174 (203)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=224.49 Aligned_cols=100 Identities=36% Similarity=0.503 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 93 (118)
+.+||++|++++++++++++ .+.+.+++| +++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+|||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~-~a~p~~d~~--l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGI-SAGPVDDDN--LFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred HHHHHHHHHHHHhcCCCCce-EEEECCCCc--ceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 78999999999999998885 555555557 669999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEE-eCCCCCCcccEEecc
Q 033475 94 VNHETGVVL-FLFDLNSVHLVFLAS 117 (118)
Q Consensus 94 V~~~~g~~c-~~L~~~w~~~~~~~~ 117 (118)
|| .+|.|| +||+++|+|++++.|
T Consensus 83 V~-~~G~vCLdIL~~~WsP~~~l~s 106 (153)
T COG5078 83 VD-PSGNVCLDILKDRWSPVYTLET 106 (153)
T ss_pred cC-CCCCChhHHHhCCCCccccHHH
Confidence 99 578777 999999999998754
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=221.34 Aligned_cols=98 Identities=28% Similarity=0.499 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (118)
Q Consensus 15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 94 (118)
.+||.||++++++++++|+ ... ++++| +++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus 3 ~~RI~kE~~~l~~dp~~~~-~~~-~~~dn--l~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI 78 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGC-SAG-PVGDN--LFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI 78 (148)
T ss_pred HHHHHHHHHHHhcCCCCCC-ccC-CCCCc--eeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence 4599999999999999994 544 56778 5699999999999999999999999999999999999999999999999
Q ss_pred cCCCceEE-eCCCCCCcccEEecc
Q 033475 95 NHETGVVL-FLFDLNSVHLVFLAS 117 (118)
Q Consensus 95 ~~~~g~~c-~~L~~~w~~~~~~~~ 117 (118)
+ +.|.+| |||++.|+|+++|.+
T Consensus 79 ~-~~G~IclDILk~~WsPAl~i~~ 101 (148)
T KOG0417|consen 79 D-SNGRICLDILKDQWSPALTISK 101 (148)
T ss_pred C-ccccchHHhhhccCChhhHHHH
Confidence 9 688888 999999999998753
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=200.41 Aligned_cols=103 Identities=26% Similarity=0.467 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475 10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
++.++.|||++++++++++++.|+.+ . +.++| ++.|.++|+||++|||+||+|++.++|+++||.+||.|+|.+++
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa-~-P~~~n--iM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~m 76 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISA-A-PVENN--IMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKM 76 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccC-C-CCccc--eeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeec
Confidence 35788999999999999999999644 3 45667 77999999999999999999999999999999999999999999
Q ss_pred eeccccCCCceEE-eCCCCCCcccEEecc
Q 033475 90 NMTCVNHETGVVL-FLFDLNSVHLVFLAS 117 (118)
Q Consensus 90 ~HPnV~~~~g~~c-~~L~~~w~~~~~~~~ 117 (118)
||||||.+ |.+| +||+..|+|.+.++|
T Consensus 77 FHPNvya~-G~iClDiLqNrWsp~Ydva~ 104 (152)
T KOG0419|consen 77 FHPNVYAD-GSICLDILQNRWSPTYDVAS 104 (152)
T ss_pred cCCCcCCC-CcchHHHHhcCCCCchhHHH
Confidence 99999976 5555 999999999887654
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=6.7e-35 Score=202.96 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 93 (118)
+.|||++|++++++++++++ .+. +.++| ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i-~~~-~~~~d--~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGI-KAE-PDPGN--YRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCe-EEE-ECCCC--ccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 46899999999999999995 444 45667 669999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEE-eCCCCCCcccEEec
Q 033475 94 VNHETGVVL-FLFDLNSVHLVFLA 116 (118)
Q Consensus 94 V~~~~g~~c-~~L~~~w~~~~~~~ 116 (118)
|+. +|.|| ++|+++|+|.+++.
T Consensus 79 V~~-~G~iCl~iL~~~W~p~~ti~ 101 (152)
T PTZ00390 79 IDK-LGRICLDILKDKWSPALQIR 101 (152)
T ss_pred ECC-CCeEECccCcccCCCCCcHH
Confidence 995 67777 99999999998864
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.7e-34 Score=197.73 Aligned_cols=97 Identities=25% Similarity=0.428 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (118)
Q Consensus 15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 94 (118)
.+||+||+++++++++++ +.+.. +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~~Rl~kE~~~l~~~~~~~-~~~~~-~~~n--l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSN-CSAGP-SDEN--LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEEE-CCCC--hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 579999999999998888 45553 5667 6699999999999999999999999999999999999999999999999
Q ss_pred cCCCceEE-eCCCCCCcccEEec
Q 033475 95 NHETGVVL-FLFDLNSVHLVFLA 116 (118)
Q Consensus 95 ~~~~g~~c-~~L~~~w~~~~~~~ 116 (118)
+. +|.+| ++|+++|.|.+++.
T Consensus 79 ~~-~G~iCl~il~~~W~p~~ti~ 100 (147)
T PLN00172 79 NS-NGSICLDILRDQWSPALTVS 100 (147)
T ss_pred CC-CCEEEcccCcCCCCCcCcHH
Confidence 95 77777 99999999998764
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.8e-33 Score=194.99 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhHcCC---CCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475 14 RNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~---~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 90 (118)
+.+||++|.+++.++. ..| +.+...++ | +.+.++.|.||++||||||.|.++|++|++|||+||+|+|.|+||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~-I~ve~vn~-~--~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAG-IIVEMVNE-N--LKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcc-eEEEEccC-C--hhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 6789999999999987 455 46666654 5 779999999999999999999999999999999999999999999
Q ss_pred eccccCCCceEE-eCCCCCCcccEEec
Q 033475 91 MTCVNHETGVVL-FLFDLNSVHLVFLA 116 (118)
Q Consensus 91 HPnV~~~~g~~c-~~L~~~w~~~~~~~ 116 (118)
||||++.+|.+| +||++.|.+++||=
T Consensus 80 HPnVSs~tGaICLDilkd~Wa~slTlr 106 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILKDQWAASLTLR 106 (200)
T ss_pred cCCCCcccccchhhhhhcccchhhhHH
Confidence 999999999999 99999999999873
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-32 Score=183.47 Aligned_cols=103 Identities=23% Similarity=0.330 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHhHcCCCCCceEEeccCCC-CcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475 13 PRNFRLLEELERGEKGIGDGTVSYGMDDGD-DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM 91 (118)
Q Consensus 13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~-n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 91 (118)
.++.||+.|-+.+.++.+.|+++......+ ..+|+.|.|.|.|+++|+||||.|.+.|.||++||++||+++|.+++||
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 347799999999999999999887666554 2338899999999999999999999999999999999999999999999
Q ss_pred ccccCCCceEEeCCCCC--CcccEEe
Q 033475 92 TCVNHETGVVLFLFDLN--SVHLVFL 115 (118)
Q Consensus 92 PnV~~~~g~~c~~L~~~--w~~~~~~ 115 (118)
||||++|-+|++||+++ |.|.++|
T Consensus 84 PNVypsgtVcLsiL~e~~~W~paiti 109 (158)
T KOG0424|consen 84 PNVYPSGTVCLSILNEEKDWRPAITI 109 (158)
T ss_pred CCcCCCCcEehhhhccccCCCchhhH
Confidence 99998444444999877 9999875
No 8
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=1.1e-31 Score=183.89 Aligned_cols=96 Identities=29% Similarity=0.458 Sum_probs=79.8
Q ss_pred HHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccccC
Q 033475 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNH 96 (118)
Q Consensus 17 Rl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 96 (118)
||++|+++++++++.|+ .+.+.+++| +..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 1 Rl~~E~~~l~~~~~~~~-~~~~~~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~- 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGI-SVQPSEDDN--LFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID- 76 (140)
T ss_dssp HHHHHHHHHHHSHTTTE-EEEEESTTE--TTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred CHHHHHHHHhhCCCCCE-EEEECCCCC--hheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence 89999999999999995 555444447 55999999999999999999999999999999999999999999999999
Q ss_pred CCceEE-eCCCCC-CcccEEec
Q 033475 97 ETGVVL-FLFDLN-SVHLVFLA 116 (118)
Q Consensus 97 ~~g~~c-~~L~~~-w~~~~~~~ 116 (118)
.+|.+| ++|..+ |.|..++.
T Consensus 77 ~~G~icl~~l~~~~W~p~~~i~ 98 (140)
T PF00179_consen 77 ENGRICLDILNPESWSPSYTIE 98 (140)
T ss_dssp TTSBBGHGGGTTTTC-TTSHHH
T ss_pred ccccchhhhhhcccCCcccccc
Confidence 578777 999865 99976653
No 9
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.9e-31 Score=179.92 Aligned_cols=89 Identities=31% Similarity=0.571 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (118)
Q Consensus 15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 94 (118)
..-|+++|++|++++.+| +++.+.+++|+| +|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|+||||||
T Consensus 7 ~~ll~~qlk~L~~~pv~g-f~~glvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEG-FSVGLVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred HHHHHHHHHHHhcCCCCc-cccccccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 457899999999999999 688888998954 99999999999999999999999999999999999999999999999
Q ss_pred cCCCceEE-eCCCC
Q 033475 95 NHETGVVL-FLFDL 107 (118)
Q Consensus 95 ~~~~g~~c-~~L~~ 107 (118)
|+ .|.+| +||..
T Consensus 84 y~-~G~vCISILH~ 96 (171)
T KOG0425|consen 84 YE-DGDVCISILHP 96 (171)
T ss_pred CC-CCCEEEEeecC
Confidence 96 55555 99963
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=176.59 Aligned_cols=96 Identities=29% Similarity=0.429 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475 13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT 92 (118)
Q Consensus 13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 92 (118)
+..|||++||..|+....+||.+ ++++|| ++.|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|++|||
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISA--FP~~dn--lf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HP 104 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISA--FPESDN--LFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHP 104 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCccc--CcCcCc--eeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCC
Confidence 35799999999999999999744 477888 55999999999999999999999999999999999999999999999
Q ss_pred cccCCCceEE-eCCCCCCcccE
Q 033475 93 CVNHETGVVL-FLFDLNSVHLV 113 (118)
Q Consensus 93 nV~~~~g~~c-~~L~~~w~~~~ 113 (118)
|||. .|.|| +||++.|+-++
T Consensus 105 NVD~-~GnIcLDILkdKWSa~Y 125 (175)
T KOG0421|consen 105 NVDL-SGNICLDILKDKWSAVY 125 (175)
T ss_pred Cccc-cccchHHHHHHHHHHHH
Confidence 9996 56666 99999998764
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=4.5e-30 Score=176.14 Aligned_cols=96 Identities=33% Similarity=0.486 Sum_probs=86.3
Q ss_pred HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecccc
Q 033475 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95 (118)
Q Consensus 16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 95 (118)
|||++|+++++++++.|+ .+.+ +++| +..|+++|.||++|||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~-~v~~-~~~~--~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSGI-SAEP-VEEN--LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCCe-EEEE-CCCC--hhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 699999999999998884 5543 5557 66999999999999999999999999999999999999999999999999
Q ss_pred CCCceEE-eCCCCC-CcccEEec
Q 033475 96 HETGVVL-FLFDLN-SVHLVFLA 116 (118)
Q Consensus 96 ~~~g~~c-~~L~~~-w~~~~~~~ 116 (118)
.+|.+| ++|..+ |.|..++.
T Consensus 78 -~~G~icl~~l~~~~W~p~~~l~ 99 (141)
T cd00195 78 -ENGKICLSILKTHGWSPAYTLR 99 (141)
T ss_pred -CCCCCchhhcCCCCcCCcCcHH
Confidence 688888 999988 99988753
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-29 Score=169.25 Aligned_cols=92 Identities=26% Similarity=0.468 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475 11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (118)
Q Consensus 11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 90 (118)
+..++|||++|+++|-+++++||++ .+.++||+| .|.|.|.||++|+|+||.|-.++.||.|||..||+++|.-.+|
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvA-gP~~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVA-GPINEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCccee-CCCCcccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 3457899999999999999999755 556888955 9999999999999999999999999999999999999999999
Q ss_pred eccccCCCceEE-eCCC
Q 033475 91 MTCVNHETGVVL-FLFD 106 (118)
Q Consensus 91 HPnV~~~~g~~c-~~L~ 106 (118)
|||||.+ |.+| +||.
T Consensus 79 HPNiy~d-G~VCISILH 94 (165)
T KOG0426|consen 79 HPNIYPD-GRVCISILH 94 (165)
T ss_pred cCcccCC-CeEEEEEee
Confidence 9999975 5555 9985
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=9e-29 Score=170.39 Aligned_cols=96 Identities=35% Similarity=0.552 Sum_probs=85.2
Q ss_pred HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecccc
Q 033475 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95 (118)
Q Consensus 16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 95 (118)
+||++|+++++++.++|+..+.. +++| ++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~-~~~~--~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPV-DEDN--LLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEEC-CCCC--hheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 59999999999999988644433 3337 66999999999999999999999999999999999999999999999999
Q ss_pred CCCceEE-eCCC-CCCcccEEe
Q 033475 96 HETGVVL-FLFD-LNSVHLVFL 115 (118)
Q Consensus 96 ~~~g~~c-~~L~-~~w~~~~~~ 115 (118)
+ +|.+| ++|. ++|.|..++
T Consensus 78 ~-~G~icl~~l~~~~W~p~~~l 98 (145)
T smart00212 78 S-SGEICLDILKQEKWSPATTL 98 (145)
T ss_pred C-CCCEehhhcCCCCCCCCCcH
Confidence 6 78777 9998 899998664
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=164.61 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=96.4
Q ss_pred CCCCCCCccccch--HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCC
Q 033475 1 MTLGSGGSSVVVP--RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPE 78 (118)
Q Consensus 1 ~~~~~~~s~~~~~--~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~ 78 (118)
|+++++.++.+.. +.+||+|||.+++.+++.|+ ... ..|| |..|.+.+.|.+||.|+|..|.+.++||+.||+
T Consensus 1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~-~~~--v~dn--lqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~ 75 (161)
T KOG0427|consen 1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGF-KHR--VTDN--LQQWIIEVTGAPGTLYANETYQLQVEFPEHYPM 75 (161)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcc-eee--cccc--hheeEEEEecCCceeecCcEEEEEEecCCCCCC
Confidence 6777777766655 78999999999999999996 433 3456 789999999999999999999999999999999
Q ss_pred CCCEEEEeccc-eeccccCCCceEEeCCCCCCcccEEecc
Q 033475 79 KPPSVRFHSRI-NMTCVNHETGVVLFLFDLNSVHLVFLAS 117 (118)
Q Consensus 79 ~pP~v~f~t~i-~HPnV~~~~g~~c~~L~~~w~~~~~~~~ 117 (118)
+.|+|.|..++ .||+||.+|.+|++||.++|+|++.+.|
T Consensus 76 esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~S 115 (161)
T KOG0427|consen 76 ESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQS 115 (161)
T ss_pred CCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHH
Confidence 99999999875 7999996555555999999999987654
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.4e-28 Score=162.78 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 93 (118)
+.+||.|||++|++++...+ .-...+++| +..|++.|. |++-||..|.|+++|.||.+|||+||+++|.|+|||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~-rn~~~~e~n--ll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFF-RNIEVDEAN--LLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred hhHHHHHHHHHHHhccHHHH-hhhhccccc--ceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 45799999999999887653 433456778 559999999 89999999999999999999999999999999999999
Q ss_pred ccCCCceEE-eC-CCCCCcccE
Q 033475 94 VNHETGVVL-FL-FDLNSVHLV 113 (118)
Q Consensus 94 V~~~~g~~c-~~-L~~~w~~~~ 113 (118)
||+. |.+| +| +.++|.|.-
T Consensus 79 VDe~-gqvClPiis~EnWkP~T 99 (153)
T KOG0422|consen 79 VDEK-GQVCLPIISAENWKPAT 99 (153)
T ss_pred CCCC-CceeeeeeecccccCcc
Confidence 9974 7777 55 578898853
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6e-27 Score=162.91 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHhHcCCCCCceEEeccC-CCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475 11 VVPRNFRLLEELERGEKGIGDGTVSYGMDD-GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~-~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
+..+.-||++|..+++- +++ ++...++ .++++..+++++|. |+++.|+||.|.|.+++|+.||++||+|+|+|+|
T Consensus 26 ~s~a~lrl~~di~elnL--p~t-~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 26 VSAALLRLKKDILELNL--PPT-CSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred ccHHHHHHHhhhhhccC--CCc-cccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 33456677777776664 333 4433333 23322225899999 9999999999999999999999999999999999
Q ss_pred eeccccCCCceEE-eCCCCCCcccEEecc
Q 033475 90 NMTCVNHETGVVL-FLFDLNSVHLVFLAS 117 (118)
Q Consensus 90 ~HPnV~~~~g~~c-~~L~~~w~~~~~~~~ 117 (118)
||||||. .|.|| +||.+||.|+++|.|
T Consensus 102 ~HPNId~-~GnVCLnILRedW~P~lnL~s 129 (184)
T KOG0420|consen 102 YHPNIDL-DGNVCLNILREDWRPVLNLNS 129 (184)
T ss_pred ccCCcCC-cchHHHHHHHhcCccccchHH
Confidence 9999996 55555 999999999999876
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-26 Score=159.33 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (118)
Q Consensus 15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 94 (118)
.||+..|...|.... +.+...++ + +.++++.+.||.+|||+||+++++|.+|++||++.|+|.|.++||||||
T Consensus 5 ~rRid~Dv~KL~~s~----yeV~~ind-~--m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMSD----YEVTIIND-G--MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred ccchhhHHHHHHhcC----CeEEEecC-c--ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 469999998888754 34444433 4 7799999999999999999999999999999999999999999999999
Q ss_pred cCCCceEE-eCCCCCCcccEE
Q 033475 95 NHETGVVL-FLFDLNSVHLVF 114 (118)
Q Consensus 95 ~~~~g~~c-~~L~~~w~~~~~ 114 (118)
++.+|.|| +++++-|+|..=
T Consensus 78 De~SGsVCLDViNQtWSp~yD 98 (189)
T KOG0416|consen 78 DEASGSVCLDVINQTWSPLYD 98 (189)
T ss_pred hhccCccHHHHHhhhhhHHHH
Confidence 99999999 999999999753
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-25 Score=155.55 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=93.0
Q ss_pred CCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475 6 GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85 (118)
Q Consensus 6 ~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 85 (118)
+..+....-+|.+.+|++++..++++|| .+. ++++| +....+.|.||.||||++|.|++.+.+..|||.+||+-.|
T Consensus 3 snenlpp~vik~~~kEl~~l~~~PPdGI-KV~-~NeeD--~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYF 78 (223)
T KOG0423|consen 3 SNENLPPNVIKQLAKELKSLDESPPDGI-KVV-VNEED--FTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYF 78 (223)
T ss_pred cccCCChHHHHHHHHHHHhcccCCCCce-EEe-cChHH--hHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCccee
Confidence 3456667789999999999999999996 544 45666 6688999999999999999999999999999999999999
Q ss_pred eccceeccccCCCceEE-eCCCCCCcccEE
Q 033475 86 HSRINMTCVNHETGVVL-FLFDLNSVHLVF 114 (118)
Q Consensus 86 ~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~ 114 (118)
+|+||||||- .+|++| +.|+.||.|.+-
T Consensus 79 lTKIFHPNVa-aNGEICVNtLKkDW~p~LG 107 (223)
T KOG0423|consen 79 LTKIFHPNVA-ANGEICVNTLKKDWNPSLG 107 (223)
T ss_pred eeeeccCCcc-cCceehhhhhhcccCcccc
Confidence 9999999999 589999 999999999764
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.7e-23 Score=146.47 Aligned_cols=98 Identities=22% Similarity=0.201 Sum_probs=80.5
Q ss_pred cchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475 11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (118)
Q Consensus 11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 90 (118)
+-.+.|||+||++.|++++.+++.+ .+.++|| .+|+.+|.||++|||+||.|+..+.||.+||++||.|+++|+--
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A--~P~p~nI--LEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG 78 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVA--RPNPNNI--LEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG 78 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhcc--CCCccce--eeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC
Confidence 3457899999999999999999744 4677884 59999999999999999999999999999999999999999831
Q ss_pred eccccCCCceEEeCCC---CCCcccEE
Q 033475 91 MTCVNHETGVVLFLFD---LNSVHLVF 114 (118)
Q Consensus 91 HPnV~~~~g~~c~~L~---~~w~~~~~ 114 (118)
..-.++..|++|.+ +.|.|.|.
T Consensus 79 --RFktntRLCLSiSDfHPdsWNP~Ws 103 (244)
T KOG0894|consen 79 --RFKTNTRLCLSISDFHPDSWNPGWS 103 (244)
T ss_pred --ceecCceEEEeccccCcCcCCCccc
Confidence 11222456667764 88988774
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.6e-19 Score=130.46 Aligned_cols=99 Identities=26% Similarity=0.284 Sum_probs=78.4
Q ss_pred cccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475 9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (118)
Q Consensus 9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 88 (118)
+...++.|||+||.++++ ++.+.+.+ ++-+|| |++|+++|.||.+|-|+||+|+.+|.||.|||++||.+..+|+
T Consensus 7 N~KnpaVkRlmkEa~El~-~Ptd~yha--~plEdN--lFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp 81 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELK-DPTDHYHA--QPLEDN--LFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP 81 (314)
T ss_pred cccCHHHHHHHHHHHHhc-Cchhhhhh--ccchhc--eeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC
Confidence 345678999999999999 55555433 456788 5599999999999999999999999999999999999999987
Q ss_pred ceeccccCCCceEEeCCC---CCCcccEE
Q 033475 89 INMTCVNHETGVVLFLFD---LNSVHLVF 114 (118)
Q Consensus 89 i~HPnV~~~~g~~c~~L~---~~w~~~~~ 114 (118)
--.--++ ..+|++|.. +.|.|.|-
T Consensus 82 NGRFE~n--kKiCLSISgyHPEtWqPSWS 108 (314)
T KOG0428|consen 82 NGRFEVN--KKICLSISGYHPETWQPSWS 108 (314)
T ss_pred CCceeeC--ceEEEEecCCCccccCcchh
Confidence 4333333 345558764 78888764
No 21
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.9e-16 Score=104.56 Aligned_cols=104 Identities=58% Similarity=0.936 Sum_probs=92.7
Q ss_pred ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475 10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
+.+||.-||.+|+.+=++...++.+++.+.+.+++-|..|.+.|.||+.|+||+.+|.++|..-.+||..||.|+|.+++
T Consensus 2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki 81 (138)
T KOG0896|consen 2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI 81 (138)
T ss_pred CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence 45789999999999999998899899998888888789999999999999999999999999999999999999999999
Q ss_pred eeccccCCCceEE--eC-CCCCCcccE
Q 033475 90 NMTCVNHETGVVL--FL-FDLNSVHLV 113 (118)
Q Consensus 90 ~HPnV~~~~g~~c--~~-L~~~w~~~~ 113 (118)
--+.|+..+|++- ++ .-.+|.-.+
T Consensus 82 nm~gvn~~~g~Vd~~~i~~L~~W~~~y 108 (138)
T KOG0896|consen 82 NMNGVNSSNGVVDPRDITVLARWQRSY 108 (138)
T ss_pred eecccccCCCccCccccchhhcccccc
Confidence 9999999999883 44 246666543
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.4e-14 Score=101.85 Aligned_cols=92 Identities=14% Similarity=0.206 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCC--CCCCEEEEecccee
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP--EKPPSVRFHSRINM 91 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~H 91 (118)
...-|..|+..+.+.+.+||+. .|+..|-+ .|.++|++-. +.|+||+|+|.|.+|++|| ..-|+|.|.+.++|
T Consensus 20 qey~llAEf~lV~~ekL~gIyv--iPSyan~l--~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH 94 (258)
T KOG0429|consen 20 QEYALLAEFVLVCREKLDGIYV--IPSYANKL--LWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH 94 (258)
T ss_pred HHHHHHHHHHHHHhccCCceEE--cccccccc--eEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence 3456778888888899999844 46777854 9999999755 5999999999999999999 46799999999999
Q ss_pred ccccCCCceEE-eCCCCCCc
Q 033475 92 TCVNHETGVVL-FLFDLNSV 110 (118)
Q Consensus 92 PnV~~~~g~~c-~~L~~~w~ 110 (118)
|+|.+.++.+| +-.-.+|.
T Consensus 95 P~icp~skeLdl~raf~eWR 114 (258)
T KOG0429|consen 95 PLICPKSKELDLNRAFPEWR 114 (258)
T ss_pred cccCCCccceeHhhhhhhhh
Confidence 99999999998 44333364
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=7.1e-13 Score=112.52 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475 6 GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85 (118)
Q Consensus 6 ~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 85 (118)
+.+..+....+|+++|++.+.++.+.+++ ..+.+.. +...+++|.||.+|||++|.|.|+|+||..||..||.|++
T Consensus 275 ~~k~hs~~~skrv~ke~~llskdlpEgif--vrp~e~R--Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~ 350 (1101)
T KOG0895|consen 275 SSKPHSKNWSKKVAKELKLLSKDLPEGIF--VRPDEGR--MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKY 350 (1101)
T ss_pred CCCccchhhHHHHHHHhhhhcccCCCCcc--ccccccc--cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEE
Confidence 33444556789999999999999999963 3355656 7799999999999999999999999999999999999999
Q ss_pred ecc---ceeccccCCCceEE-eCCC-------CCCccc
Q 033475 86 HSR---INMTCVNHETGVVL-FLFD-------LNSVHL 112 (118)
Q Consensus 86 ~t~---i~HPnV~~~~g~~c-~~L~-------~~w~~~ 112 (118)
+|. .+.||.|. .|+|| ++|. +.|.|.
T Consensus 351 lt~~~~R~nPNlYn-~GKVcLslLgTwtg~~~e~wtp~ 387 (1101)
T KOG0895|consen 351 LTGGGVRLNPNLYN-DGKVCLSLLGTWTGSRREKWTPN 387 (1101)
T ss_pred eeccceeecCCccc-CceEEeeeeeecccccccCCCcc
Confidence 987 67999995 66777 7763 556654
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-13 Score=117.27 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc--cee
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR--INM 91 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~H 91 (118)
-.+..+.|++.+..+.+.+++... .++- |.-.++.|.||.+|||++|.|.|++.||++||..||.|...+- .++
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~--~e~r--~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~n 927 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRA--YEDR--MDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLN 927 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEe--chHH--HHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeC
Confidence 345556677777788888875443 4554 4466899999999999999999999999999999999999874 579
Q ss_pred ccccCCCceEE-eCCC
Q 033475 92 TCVNHETGVVL-FLFD 106 (118)
Q Consensus 92 PnV~~~~g~~c-~~L~ 106 (118)
||.|. .|++| ++|+
T Consensus 928 pnly~-~g~vc~s~l~ 942 (1101)
T KOG0895|consen 928 PNLYE-DGKVCLSLLN 942 (1101)
T ss_pred ccccc-ccceehhhhc
Confidence 99995 66666 8886
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.23 E-value=0.00082 Score=45.60 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=34.7
Q ss_pred CCcEEEEEEEccCCCCCCCCEEEEeccc---eeccccCCCceEE
Q 033475 62 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVL 102 (118)
Q Consensus 62 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~g~~c 102 (118)
.++.+.+.|.+|++||..||.|....+- +=|||+. +|.+|
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LC 76 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLC 76 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEE
Confidence 5899999999999999999999888654 6899997 66666
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00074 Score=44.77 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.4
Q ss_pred EEEEEccCCCCCCCCEEEEeccceeccccCCCceEE-eCC-CCCCcccEE
Q 033475 67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVL-FLF-DLNSVHLVF 114 (118)
Q Consensus 67 ~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~g~~c-~~L-~~~w~~~~~ 114 (118)
-+.+.|+++||+.||.++-..|+-.--.-.++|.|| -+| .+.|.+..+
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~ 63 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYE 63 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhh
Confidence 345678999999999999665544333334678888 666 577877543
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.52 E-value=0.0018 Score=44.66 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCc----------EEEEEEEccCCCCCCCCEE
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSV 83 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v 83 (118)
-..||+.|++.|-+- +... ...|| .|.-+=--++||-|.|- .|.+++.+|..||..||.+
T Consensus 25 W~~RLKEEy~aLI~Y-----v~~n-K~~Dn----dWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 25 WVQRLKEEYQALIKY-----VENN-KENDN----DWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp HHHHHHHHHHHHHHH-----HHHH-HHTT-------EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred HHHHHHHHHHHHHHH-----HHhc-ccccC----CeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence 468999999987541 1110 11111 23222222444444442 2455666799999999999
Q ss_pred EEecc-ceeccccCCCceEE
Q 033475 84 RFHSR-INMTCVNHETGVVL 102 (118)
Q Consensus 84 ~f~t~-i~HPnV~~~~g~~c 102 (118)
..-.- ---.-.| .||.+|
T Consensus 95 ~lPeLdGKTaKMY-RGGkIC 113 (161)
T PF08694_consen 95 ALPELDGKTAKMY-RGGKIC 113 (161)
T ss_dssp B-GGGTTT-SSBC-CCCBB-
T ss_pred eccccCCchhhhh-cCceEe
Confidence 76420 0012234 578877
No 28
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.24 E-value=0.032 Score=35.71 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEE--CCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTII--GPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~--Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
.++..|+..|+.--++.. ... ...+ -..+.+.+. ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~--~~~-~~~~--~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF--IEI-ESKS--PPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE--SSS-TSSS--SEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc--ccc-ccCC--CCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888886333221 111 1222 225566662 12344445678999999999999999999877653
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=96.03 E-value=0.012 Score=39.36 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=37.4
Q ss_pred eeEEEEEEECCCCCCCCCcEEEEE--EEccCCCCCCCCEEEEeccc-----eeccccCCCceEE-eCCCCCCcc
Q 033475 46 MRSWTGTIIGPHNTVHEGRIYQLK--LFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVL-FLFDLNSVH 111 (118)
Q Consensus 46 l~~w~~~i~Gp~~tpy~gg~f~~~--i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~g~~c-~~L~~~w~~ 111 (118)
|....++|.- .|+|..|.+- |-+|++||.+||.+...... -+.+||. +|.|. +.|+ +|.+
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL~-~W~~ 99 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYLQ-NWNP 99 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHHH-T--T
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchhc-cCCC
Confidence 6677777752 5888888654 55799999999999765322 1449995 67775 5553 4543
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.026 Score=38.42 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcE----------EEEEEEccCCCCCCCCEE
Q 033475 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI----------YQLKLFCDKDYPEKPPSV 83 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v 83 (118)
-.+||+.|++.|-.-. ... .+.+| .|.-+=.-++||-|-|-+ |.+++.+|-.||..+|.+
T Consensus 28 wvqrlkeey~sli~yv-----qnn-k~~d~----dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei 97 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYV-----QNN-KSNDN----DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI 97 (167)
T ss_pred HHHHHHHHHHHHHHHH-----HhC-cccCC----cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence 3689999999886411 000 11122 343333446677776632 455566799999999998
Q ss_pred EEecc-ceeccccCCCceEE--eCCCCCC
Q 033475 84 RFHSR-INMTCVNHETGVVL--FLFDLNS 109 (118)
Q Consensus 84 ~f~t~-i~HPnV~~~~g~~c--~~L~~~w 109 (118)
..--- -----.| .+|.+| +-++.=|
T Consensus 98 alpeldgktakmy-rggkiclt~hfkplw 125 (167)
T KOG3357|consen 98 ALPELDGKTAKMY-RGGKICLTDHFKPLW 125 (167)
T ss_pred cccccCchhhhhh-cCceEeeccccchhh
Confidence 75310 0011234 588888 5555544
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.78 E-value=0.14 Score=32.42 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.4
Q ss_pred CcEEEEEEEccCCCCCCCCEEEEecc
Q 033475 63 GRIYQLKLFCDKDYPEKPPSVRFHSR 88 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~~pP~v~f~t~ 88 (118)
...+.+.+.+|++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45688999999999999999988754
No 32
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.51 E-value=0.19 Score=39.33 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=48.1
Q ss_pred EEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEE--ccCCCCCCCCEEEEecc-----ceeccccCCCceE-EeCCC
Q 033475 35 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF--CDKDYPEKPPSVRFHSR-----INMTCVNHETGVV-LFLFD 106 (118)
Q Consensus 35 ~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~HPnV~~~~g~~-c~~L~ 106 (118)
.+...|+..-.++...++|. .+|+|.+|.+-|. +.+.||..||.+..... -.|-+||+ +|.| ++.|+
T Consensus 41 tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYLh 115 (365)
T KOG2391|consen 41 TFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYLH 115 (365)
T ss_pred eEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhhc
Confidence 44455554322445555554 4788999987666 69999999999855421 13999996 5655 58885
Q ss_pred CCCccc
Q 033475 107 LNSVHL 112 (118)
Q Consensus 107 ~~w~~~ 112 (118)
+|.+.
T Consensus 116 -~W~~p 120 (365)
T KOG2391|consen 116 -NWDPP 120 (365)
T ss_pred -cCCCc
Confidence 57654
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=84.24 E-value=3.1 Score=28.03 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=31.8
Q ss_pred EEEEEEEC--CCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475 48 SWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 48 ~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
.|-+ |.| -+.+.|....-.+-|.+|..||..+|-+.+..+-
T Consensus 25 ~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~ 67 (122)
T PF14462_consen 25 RWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP 67 (122)
T ss_pred cEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc
Confidence 5654 554 4455799999999999999999999987766553
No 34
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.99 E-value=8.2 Score=33.75 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCC-CCCEEEEec
Q 033475 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPE-KPPSVRFHS 87 (118)
Q Consensus 15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t 87 (118)
.+-|.+|+.-|-..-+ . +.++-.+-. -+...+.+.+|-..-=.-...++.|.||.+||. .+|++.|..
T Consensus 422 pQnLgeE~S~Ig~k~~-n-V~fEkidva---~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKIR-N-VNFEKIDVA---DRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhhHHhHHhHhhcccc-c-cceEeeccc---cceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEec
Confidence 3467777777765432 1 223311222 135667777765543222445788999999996 579999874
No 35
>smart00340 HALZ homeobox associated leucin zipper.
Probab=76.52 E-value=2.4 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHcC
Q 033475 14 RNFRLLEELERGEKG 28 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~ 28 (118)
-++||++|+++|..-
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 478999999999863
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=76.02 E-value=12 Score=28.72 Aligned_cols=61 Identities=26% Similarity=0.275 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475 12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85 (118)
Q Consensus 12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 85 (118)
....++|.+|+.++..+.. +.+.. +. + +...++.+.. + .....+++.+|.+||.++|.+..
T Consensus 98 ~~~ys~ll~EIe~IGW~kl---~~i~~-d~-~--ls~i~l~~~D--~----~R~H~l~l~l~~~yp~~~p~~~~ 158 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL---VQIQF-DD-D--LSTIKLKIFD--S----SRQHYLELKLPSNYPFEPPSCSL 158 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC---EEEEE--C-C--CSEEEEEEET--T----CEEEEEEEETTTTTTTSEEEECS
T ss_pred cHHHHHHHHHHHHhccccc---eEEec-CC-C--ccEEEEEEEc--C----CceEEEEEEECCCCCCCCceeeC
Confidence 4467899999999988764 33322 33 3 5677777772 1 16788999999999999997543
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.67 E-value=4.1 Score=30.00 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=18.5
Q ss_pred EEEEEEEccCCCCCCCCEEE
Q 033475 65 IYQLKLFCDKDYPEKPPSVR 84 (118)
Q Consensus 65 ~f~~~i~fp~~YP~~pP~v~ 84 (118)
.+.+.+.++++||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999994
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=66.58 E-value=10 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.7
Q ss_pred CcEEEEEEEccCCCC-CCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYP-EKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP-~~pP~v~f~t 87 (118)
.|.|.|.-.+|-.|| .+||-|+|..
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999999874
No 39
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=64.16 E-value=3.7 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=15.8
Q ss_pred CCCccccchHHHHHHHHHHHh
Q 033475 5 SGGSSVVVPRNFRLLEELERG 25 (118)
Q Consensus 5 ~~~s~~~~~~~kRl~kEl~~l 25 (118)
.+++.++.+-+|||+++|+-|
T Consensus 51 ~t~~ss~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 51 DTGLSSVLSQLKRIQRDLRGL 71 (76)
T ss_dssp -TTHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHhhCCC
Confidence 344556677899999999876
No 40
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=61.76 E-value=36 Score=21.14 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=26.9
Q ss_pred eEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475 47 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 47 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
+.|.+-+.|+.+.--..-+=++...+.+.|+. |...+..+.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pP 42 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPP 42 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTT
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCC
Confidence 58999999888765555667777888888875 555555443
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=59.05 E-value=16 Score=26.18 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=22.6
Q ss_pred CcEEEEEEEccCCCCCCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYPEKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~~pP~v~f~t 87 (118)
.|.|.|+=.+|--||.++|-|+|..
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4899999999999999999999874
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=57.13 E-value=19 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.4
Q ss_pred CcEEEEEEEccCCCC-----CCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYP-----EKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP-----~~pP~v~f~t 87 (118)
.|.|.|+-.+|--|| .+||-|+|..
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999999874
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=54.89 E-value=16 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=22.6
Q ss_pred cEEEEEEEccCCCCCCCCEEEEecc
Q 033475 64 RIYQLKLFCDKDYPEKPPSVRFHSR 88 (118)
Q Consensus 64 g~f~~~i~fp~~YP~~pP~v~f~t~ 88 (118)
-++.+.|..+..||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5788999999999999999998755
No 44
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=51.03 E-value=14 Score=25.94 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.7
Q ss_pred EEEEccCCCCCCCCEEEEeccce---eccccC
Q 033475 68 LKLFCDKDYPEKPPSVRFHSRIN---MTCVNH 96 (118)
Q Consensus 68 ~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~ 96 (118)
+.|.|+.+||..+|.|.++-+-| +||++.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~ 88 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP 88 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCC
Confidence 46789999999999877765433 577764
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=49.71 E-value=29 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=22.7
Q ss_pred CcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475 63 GRIYQLKLFCDKDYPEKPPSVRFHSRINM 91 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 91 (118)
+-.|-+.+.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 4467788889999999999999876 344
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=46.60 E-value=32 Score=24.82 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=21.7
Q ss_pred CcEEEEEEEccCCCCC-----CCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYPE-----KPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~-----~pP~v~f~t 87 (118)
.|.|.|+-..|--||. +||-|+|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4889999999999998 899888863
No 47
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=45.46 E-value=55 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=25.6
Q ss_pred EEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475 48 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (118)
Q Consensus 48 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 88 (118)
...+++..|+-.|- --...+++.| .||-..||+|.|+.+
T Consensus 38 ~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 38 TADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred eEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 33444444555552 2235666777 789999999999876
No 48
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=44.93 E-value=7.2 Score=34.09 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEEEEEccCCCCCCCCEEEEeccc
Q 033475 65 IYQLKLFCDKDYPEKPPSVRFHSRI 89 (118)
Q Consensus 65 ~f~~~i~fp~~YP~~pP~v~f~t~i 89 (118)
+=-++|.+|.|||..+|.+.+.+.-
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~~ 739 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRDE 739 (799)
T ss_dssp -------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHHH
Confidence 3346788999999999998776543
No 49
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.07 E-value=42 Score=24.03 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=21.0
Q ss_pred CcEEEEEEEccCCCCC-----CCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYPE-----KPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~-----~pP~v~f~t 87 (118)
+|.|.|.-.+|--||. +||-|+|.-
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3889999999999995 888888763
No 50
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=39.60 E-value=21 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHcC
Q 033475 15 NFRLLEELERGEKG 28 (118)
Q Consensus 15 ~kRl~kEl~~l~~~ 28 (118)
-+||.+||+++.-.
T Consensus 36 r~rL~kEL~d~D~~ 49 (59)
T PF12065_consen 36 RQRLRKELQDMDMC 49 (59)
T ss_pred HHHHHHHHHHcccc
Confidence 56888999888754
No 51
>PF10069 DICT: Sensory domain found in DIguanylate Cyclases & Two-component systems; InterPro: IPR019278 This entry, found in various cyanobacterial sensor proteins that catalyse the reaction [ATP + protein L-histidine = ADP + protein N- phospho-L-histidine], has no known function.
Probab=37.17 E-value=1.2e+02 Score=20.04 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=9.8
Q ss_pred chHHHHHHHHHHHhHc
Q 033475 12 VPRNFRLLEELERGEK 27 (118)
Q Consensus 12 ~~~~kRl~kEl~~l~~ 27 (118)
.++.+++.+|....++
T Consensus 56 FQ~~s~~~~e~~rY~~ 71 (129)
T PF10069_consen 56 FQRLSRFRQEIDRYRQ 71 (129)
T ss_pred CCChhhhHHHHHHHHH
Confidence 3466677777665544
No 52
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=36.80 E-value=28 Score=27.21 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=25.9
Q ss_pred CCCCCcEEE-EEEEc-----cCCCCCCCCEEEEeccceeccccCC
Q 033475 59 TVHEGRIYQ-LKLFC-----DKDYPEKPPSVRFHSRINMTCVNHE 97 (118)
Q Consensus 59 tpy~gg~f~-~~i~f-----p~~YP~~pP~v~f~t~i~HPnV~~~ 97 (118)
.-|+.|.+. ++..| .+.-+..-|+|.|...+|||||-+.
T Consensus 282 q~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 282 QCWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred ccccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 346665554 33333 2334456799999999999999754
No 53
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=33.00 E-value=24 Score=24.80 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=11.3
Q ss_pred cccee---ccccCCCceEE
Q 033475 87 SRINM---TCVNHETGVVL 102 (118)
Q Consensus 87 t~i~H---PnV~~~~g~~c 102 (118)
|++|| +||+. +|.||
T Consensus 90 T~Ly~aPf~NV~~-~g~vC 107 (175)
T PF14460_consen 90 TPLYHAPFFNVYS-NGSVC 107 (175)
T ss_pred CeeEeCCccccCC-CCcEe
Confidence 56777 69994 67777
No 54
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=32.21 E-value=70 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.6
Q ss_pred CcEEEEEEEccCCCC------------------CCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 87 (118)
+|.|.|+-..|--|| .+||-|+|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 489999999999997 6789999873
No 55
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.01 E-value=53 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=17.7
Q ss_pred CCccccchHHHHHHHHHHHhHcCCC
Q 033475 6 GGSSVVVPRNFRLLEELERGEKGIG 30 (118)
Q Consensus 6 ~~s~~~~~~~kRl~kEl~~l~~~~~ 30 (118)
+|++...+ .||++|-+.++..++.
T Consensus 55 GM~sKPLH-VrRlqKAL~ew~~~p~ 78 (82)
T PF04904_consen 55 GMASKPLH-VRRLQKALQEWSTNPH 78 (82)
T ss_pred CccCccHH-HHHHHHHHHHHhcChh
Confidence 45555555 7899999999987753
No 56
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=31.67 E-value=72 Score=20.18 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=19.7
Q ss_pred CCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475 62 EGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (118)
Q Consensus 62 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 88 (118)
+|..+.|...-|+.|| .|.|.|.+.
T Consensus 17 eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 17 EGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred cCCCEEEEecCCCCCC--CCEEEEECC
Confidence 4667888888888999 588888864
No 57
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=31.63 E-value=72 Score=25.16 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCCCcEEEEEEEccCCCCCCCCEEEEe-ccceecc
Q 033475 60 VHEGRIYQLKLFCDKDYPEKPPSVRFH-SRINMTC 93 (118)
Q Consensus 60 py~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPn 93 (118)
||.|...+-+|.|-..||..||-+.|. ..-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 688999999999999999999999996 3447774
No 58
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=31.46 E-value=1.1e+02 Score=23.29 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=27.6
Q ss_pred EEEEEEECCCCCCCCC---cEEEEEEEc-----cCCCCCCCCEEEEecccee
Q 033475 48 SWTGTIIGPHNTVHEG---RIYQLKLFC-----DKDYPEKPPSVRFHSRINM 91 (118)
Q Consensus 48 ~w~~~i~Gp~~tpy~g---g~f~~~i~f-----p~~YP~~pP~v~f~t~i~H 91 (118)
-|++....-+...-+| +.|+.++++ .-|-||+||+|+.+++-|.
T Consensus 104 PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 104 PWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4666555322222222 445556665 4688999999999988653
No 59
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=30.37 E-value=47 Score=21.04 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=10.6
Q ss_pred CCCCCCCCCcEEEEEEEccCCC
Q 033475 55 GPHNTVHEGRIYQLKLFCDKDY 76 (118)
Q Consensus 55 Gp~~tpy~gg~f~~~i~fp~~Y 76 (118)
||+-.|=.+.+|++. ||+++
T Consensus 1 G~d~~P~RdHVFhlt--FPkeW 20 (87)
T PF08675_consen 1 GPDPQPSRDHVFHLT--FPKEW 20 (87)
T ss_dssp SS----SGCCEEEEE----TT-
T ss_pred CCCCCCCcceEEEEe--CchHh
Confidence 677788888888876 88886
No 60
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.20 E-value=41 Score=19.33 Aligned_cols=15 Identities=47% Similarity=0.434 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhHcC
Q 033475 14 RNFRLLEELERGEKG 28 (118)
Q Consensus 14 ~~kRl~kEl~~l~~~ 28 (118)
+.||+++|+++++++
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788888877764
No 61
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=29.14 E-value=85 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=21.7
Q ss_pred CcEEEEEEEccCCCC------------------CCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 87 (118)
+|.|.|.-..|--|| .+||-|+|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 589999999999999 4899999873
No 62
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=28.76 E-value=1.2e+02 Score=19.99 Aligned_cols=24 Identities=8% Similarity=-0.086 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCCCCcEEEE--EEEc
Q 033475 49 WTGTIIGPHNTVHEGRIYQL--KLFC 72 (118)
Q Consensus 49 w~~~i~Gp~~tpy~gg~f~~--~i~f 72 (118)
..|.|..+...-|+.|.+++ .++|
T Consensus 67 i~CeiL~~g~~~W~kGK~ri~~~leF 92 (114)
T PF08872_consen 67 IECEILRFGSKGWQKGKVRIKVSLEF 92 (114)
T ss_pred eeEEEeccCCCCCccceEEEEEEEEE
Confidence 36778777778899999999 7777
No 63
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=28.34 E-value=90 Score=18.03 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=12.5
Q ss_pred EEEEEEEccCCCCCCCCEEEEec
Q 033475 65 IYQLKLFCDKDYPEKPPSVRFHS 87 (118)
Q Consensus 65 ~f~~~i~fp~~YP~~pP~v~f~t 87 (118)
.+...|.|++.|.. ||+|.+--
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i 23 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSI 23 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEE
Confidence 35678999999986 89887653
No 64
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.33 E-value=93 Score=22.97 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=20.8
Q ss_pred CcEEEEEEEccCCCCC-------CCCEEEEe
Q 033475 63 GRIYQLKLFCDKDYPE-------KPPSVRFH 86 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~-------~pP~v~f~ 86 (118)
.|.|.|.-..|--||. +||-|+|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999975 89999885
No 65
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=27.97 E-value=92 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.471 Sum_probs=21.4
Q ss_pred CcEEEEEEEccCCCC------------------CCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 87 (118)
.|.|.|+-..|--|| .+||-|+|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 589999999999997 6789998873
No 66
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=27.42 E-value=97 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=21.1
Q ss_pred CcEEEEEEEccCCCC------------------CCCCEEEEec
Q 033475 63 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (118)
Q Consensus 63 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 87 (118)
+|.|.|+-..|..|| .+||-|+|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 589999999998887 5889999873
No 67
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=26.95 E-value=1e+02 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=21.0
Q ss_pred CcEEEEEEEccCCCCC-------CCCEEEEe
Q 033475 63 GRIYQLKLFCDKDYPE-------KPPSVRFH 86 (118)
Q Consensus 63 gg~f~~~i~fp~~YP~-------~pP~v~f~ 86 (118)
.|.|.|.-..|--||. .||-|+|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5899999999999986 89999885
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=25.70 E-value=1.3e+02 Score=23.78 Aligned_cols=41 Identities=15% Similarity=0.376 Sum_probs=29.1
Q ss_pred eEEEEEEECCCCC-CCCCcEEEEEEE---ccCCCCCCCCEEEEecc
Q 033475 47 RSWTGTIIGPHNT-VHEGRIYQLKLF---CDKDYPEKPPSVRFHSR 88 (118)
Q Consensus 47 ~~w~~~i~Gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~t~ 88 (118)
.+|+..+.|-+++ -|++|.+++.+. |..-| .+.|+|||-.-
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~v 241 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGMV 241 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeEE
Confidence 3688999996665 788999887765 43333 45679999743
No 69
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=25.00 E-value=78 Score=26.88 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCCcEEEEEEEccCCCCC---CCCEEEEeccc
Q 033475 60 VHEGRIYQLKLFCDKDYPE---KPPSVRFHSRI 89 (118)
Q Consensus 60 py~gg~f~~~i~fp~~YP~---~pP~v~f~t~i 89 (118)
||.=|.|.+ +.+|+.||+ +-|-++|+|+-
T Consensus 249 pY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 249 PYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CcccccceE-EEecCCCCcccccCcceeeecch
Confidence 666677875 567999995 68999999983
No 70
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=24.06 E-value=51 Score=20.69 Aligned_cols=18 Identities=33% Similarity=0.180 Sum_probs=14.0
Q ss_pred ccchHHHHHHHHHHHhHc
Q 033475 10 VVVPRNFRLLEELERGEK 27 (118)
Q Consensus 10 ~~~~~~kRl~kEl~~l~~ 27 (118)
+.+...+||.||.....+
T Consensus 4 Ikt~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 4 IKTGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 346678999999987765
No 71
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=23.74 E-value=1.3e+02 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.7
Q ss_pred CcEEEEEEEccCCCC------------------CCCCEEEEe
Q 033475 63 GRIYQLKLFCDKDYP------------------EKPPSVRFH 86 (118)
Q Consensus 63 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 86 (118)
+|.|.|+-..|.-|| .+||-|+|.
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 589999999999997 478999886
No 72
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.10 E-value=84 Score=20.47 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCcEEEEE
Q 033475 48 SWTGTIIGPHNTVHEGRIYQLK 69 (118)
Q Consensus 48 ~w~~~i~Gp~~tpy~gg~f~~~ 69 (118)
.|+|.|-| +..|+|..|.|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 79999997 558999988874
No 73
>PF15572 Imm26: Immunity protein 26
Probab=21.35 E-value=1.1e+02 Score=19.75 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=15.6
Q ss_pred CCCCCCCcEEEEEEEccCCCCCCCCEEEEe
Q 033475 57 HNTVHEGRIYQLKLFCDKDYPEKPPSVRFH 86 (118)
Q Consensus 57 ~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 86 (118)
++..+.|.+|++ |..||++ +.|.|.
T Consensus 8 ~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 8 EKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CccEecceEEEe----cccCCCc-ccEEEE
Confidence 444566666654 5558888 566665
No 74
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=21.14 E-value=56 Score=23.00 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=9.6
Q ss_pred cceeccccCCCceE
Q 033475 88 RINMTCVNHETGVV 101 (118)
Q Consensus 88 ~i~HPnV~~~~g~~ 101 (118)
++|||+.| .|..|
T Consensus 50 PiYhP~~D-cGD~V 62 (165)
T KOG3203|consen 50 PIYHPSTD-CGDHV 62 (165)
T ss_pred CccCCccC-CCCEE
Confidence 59999999 44443
No 75
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=21.05 E-value=53 Score=24.47 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=11.2
Q ss_pred cccee---ccccCCCceEE
Q 033475 87 SRINM---TCVNHETGVVL 102 (118)
Q Consensus 87 t~i~H---PnV~~~~g~~c 102 (118)
|++|| +||+. +|.||
T Consensus 131 T~L~~aPffNV~~-~G~VC 148 (228)
T TIGR03737 131 TKLYQAPLFNVWS-NGEIC 148 (228)
T ss_pred CeeccCCcCccCC-CCeEe
Confidence 56777 59995 68777
No 76
>KOG1758 consensus Mitochondrial F1F0-ATP synthase, subunit delta/ATP16 [Energy production and conversion]
Probab=20.74 E-value=3.1e+02 Score=19.26 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=41.0
Q ss_pred EEEEEEECCCCCCCCCcEEEEEEEccCC------CCCCCCEEEEeccceeccccCCCceEEeCCCCCCcccEEeccC
Q 033475 48 SWTGTIIGPHNTVHEGRIYQLKLFCDKD------YPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLASG 118 (118)
Q Consensus 48 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~~------YP~~pP~v~f~t~i~HPnV~~~~g~~c~~L~~~w~~~~~~~~~ 118 (118)
+.++++.-|..+.|+|..-+ +|.+|.. .+..-|.+..+.+ |++--...++|...+|+-||
T Consensus 28 ~L~l~fa~P~~t~~~~a~V~-qVdvPt~sG~~GVLanHVPti~~LkP----------GvvsV~~~~~~~~k~FvSsG 93 (159)
T KOG1758|consen 28 KLKLTFALPNTTVYDGAEVT-QVDVPTLSGQIGVLANHVPTIQVLKP----------GVVSVHEGSGTKSKYFVSSG 93 (159)
T ss_pred eeEEEEecCceEEecCceeE-EEeccccCcceeeecccCcchheecc----------ceEEEEeCCCcEEEEEEecc
Confidence 77788888888889885544 4445433 2445566655433 77777788888888888876
No 77
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=20.23 E-value=27 Score=17.82 Aligned_cols=11 Identities=9% Similarity=-0.173 Sum_probs=6.3
Q ss_pred ceeccccCCCce
Q 033475 89 INMTCVNHETGV 100 (118)
Q Consensus 89 i~HPnV~~~~g~ 100 (118)
-|||.++. +|.
T Consensus 2 ~yHPg~~~-~g~ 12 (32)
T PF00779_consen 2 KYHPGAWR-GGK 12 (32)
T ss_dssp EE-SS-EE-TTC
T ss_pred CcCCCccc-CCc
Confidence 48999995 553
No 78
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=20.10 E-value=65 Score=17.02 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.2
Q ss_pred ccchHHHHHHHHHH
Q 033475 10 VVVPRNFRLLEELE 23 (118)
Q Consensus 10 ~~~~~~kRl~kEl~ 23 (118)
.++|+.|||.+|..
T Consensus 4 ~asP~ar~la~e~g 17 (39)
T PF02817_consen 4 KASPAARKLAAELG 17 (39)
T ss_dssp CCSHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHcC
Confidence 46788999999864
No 79
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.07 E-value=2.7e+02 Score=20.19 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEE
Q 033475 13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSV 83 (118)
Q Consensus 13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 83 (118)
-..+|+++|++.+.+..-..+.-+++.++ ...+.+.|.--.+ ...|.++-.+-|++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~----~ctFdvLiyTdkD-----------~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEE----ICTFDVLIYTDKD-----------TEVPEKWDESGPKL 174 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccc----eeEEEEEEEeCCC-----------ccCCcchhcCCCeE
Confidence 36789999999999876544322333333 3377777764333 34566665554543
Done!