BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033477
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 74/90 (82%)
Query: 29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG 88
S S ++ +IK+ADM ED+Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIVG
Sbjct: 5 SMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVG 64
Query: 89 SNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 65 RNFGSYVTHETKHFIYFYLGQVAILLFKSG 94
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
S ++ +IK+ADM ED+Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIVG N
Sbjct: 2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 73/88 (82%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
S ++ +IK+ADM ED+Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIVG N
Sbjct: 5 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 64
Query: 91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 65 FGSYVTHETKHFIYFYLGQVAILLFKSG 92
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 74/91 (81%)
Query: 28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
+ S ++ +IK+ADM E++Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIV
Sbjct: 1 MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 60
Query: 88 GSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
G NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 73/88 (82%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
S ++ +IK+ADM E++Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIVG N
Sbjct: 2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
FGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKSG 89
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 131 bits (330), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
++ +IK+ADM EDLQ++A+D A A EK ++EKD+A IKK+FD+KH PTWHC+VG NFG
Sbjct: 4 RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFG 63
Query: 93 SYVTHETNHFVYFYLDQKAVLLFKSG 118
SYVTHET+HF+YFY+ Q AVLLFKSG
Sbjct: 64 SYVTHETHHFIYFYIGQVAVLLFKSG 89
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSN 90
S ++ +IK+ADM E++Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIVG N
Sbjct: 2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 91 FGSYVTHETNHFVYFYLDQKAVLLFKSG 118
FGSYVTHET HF+YFYL Q A+LLFK G
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKEG 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 73/91 (80%)
Query: 28 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIV 87
+ S ++ +IK+ADM E++Q++AVD A A EK ++E D+A IKK+FDKK+ PTWHCIV
Sbjct: 1 MDMSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIV 60
Query: 88 GSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
G NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVG-- 88
S ++ +IK+ADM ED+Q++AVD A A EK ++EKD+A IKK+FDKK+ PTWHCIVG
Sbjct: 2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRS 61
Query: 89 SNFGSYVTHETNHFVYFYLDQKAVLLFKSG 118
NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 62 GNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 72/86 (83%)
Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFG 92
++ +IK+ADM E++Q+++V+ A A EK ++EKD+A IKK+FDKK+ PTWHCIVG NFG
Sbjct: 4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFG 63
Query: 93 SYVTHETNHFVYFYLDQKAVLLFKSG 118
SYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 64 SYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 71/85 (83%)
Query: 34 RIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGS 93
+ +IK+ADM E++Q+++V+ A A EK ++EKD+A IKK+FDKK+ PTWHCIVG NFGS
Sbjct: 1 KAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGS 60
Query: 94 YVTHETNHFVYFYLDQKAVLLFKSG 118
YVTHET HF+YFYL Q A+LLFKSG
Sbjct: 61 YVTHETKHFIYFYLGQVAILLFKSG 85
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 36 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYV 95
++K+ DM E++Q +A+D A A +K +VEKD+A IKK+FD+K+ PTWHC+VG NFGSYV
Sbjct: 20 VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 96 THETNHFVYFYLDQKAVLLFKSG 118
THET +F+YFY+ Q A+LLFKSG
Sbjct: 80 THETKNFIYFYIGQVAILLFKSG 102
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 36 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYV 95
I+K++D+ + L+++ + I+ A +K +E+D+A +KK D K+G TWH IVG NFGSYV
Sbjct: 15 IVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYV 74
Query: 96 THETNHFVYFYLDQKAVLLFKS 117
THE HFVYFY+ A L+FK+
Sbjct: 75 THEKGHFVYFYIGPLAFLVFKT 96
>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
Length = 217
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 9 VTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVA 68
VTG ++ +P P V S ++I +A + + + +A + K S++ +
Sbjct: 129 VTGVIIWRPYFAQYFPMQVVRYS---LLIHAAAGIILIHAILIHMYMAFWVKGSIKGMIE 185
Query: 69 ERIKKDFDKKHGPTWH 84
++ + + KKH P W+
Sbjct: 186 GKVSRRWAKKHHPRWY 201
>pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GZ1|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ1|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ2|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ2|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ3|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|3PWK|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWK|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PYL|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|C Chain C, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|D Chain D, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYX|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PYX|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PZB|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3PZB|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3Q11|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q11|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q1L|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|C Chain C, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|D Chain D, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
Length = 366
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 42/131 (32%)
Query: 1 MSEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSA-------DMKEDLQKEAVDI 53
M++ETKK + DD ++AVS + RI + SA + KE E V
Sbjct: 224 MTKETKKIM---------EDD---SIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKA 271
Query: 54 AIAAFEKNSVEKDVAE------------------RIKKDFDKKHGP-TW----HCIVGSN 90
AIAAF +E DVA RI+KD D + G W + + G+
Sbjct: 272 AIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKGAA 331
Query: 91 FGSYVTHETNH 101
+ S ET H
Sbjct: 332 WNSVQIAETLH 342
>pdb|4FXX|A Chain A, Structure Of Sf1 Coiled-coil Domain
pdb|4FXX|B Chain B, Structure Of Sf1 Coiled-coil Domain
pdb|4FXX|C Chain C, Structure Of Sf1 Coiled-coil Domain
pdb|4FXX|D Chain D, Structure Of Sf1 Coiled-coil Domain
Length = 112
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 5 TKKSVTGALVVKPNSDDRKPTVAV--SQSGKRIIIKSADMKEDLQKE 49
T+K TG L + PN +DR P+ + GKR+ + ++ L++E
Sbjct: 42 TRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEE 88
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKK 73
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ + +
Sbjct: 95 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 136
>pdb|2M0G|A Chain A, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 145
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 5 TKKSVTGALVVKPNSDDRKPTVAV--SQSGKRIIIKSADMKEDLQKE 49
T+K TG L + PN +DR P+ + GKR+ + ++ L++E
Sbjct: 62 TRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEE 108
>pdb|2M09|A Chain A, Structure, Phosphorylation And U2af65 Binding Of The
Nterminal Domain Of Splicing Factor 1 During 3 Splice
Site Recognition
Length = 121
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 5 TKKSVTGALVVKPNSDDRKPTVAV--SQSGKRIIIKSADMKEDLQKE 49
T+K TG L + PN +DR P+ + GKR+ + ++ L++E
Sbjct: 38 TRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEE 84
>pdb|3T9N|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3T9N|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3T9N|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3T9N|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3T9N|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3T9N|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3T9N|G Chain G, Crystal Structure Of A Membrane Protein
Length = 282
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 45 DLQKEAVDIAIAA----FEKNSVEKDVAERIKKDFDKKH 79
D+Q + I + A +K +VE+D+ R+KK FD+K+
Sbjct: 226 DMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKN 264
>pdb|3UDC|A Chain A, Crystal Structure Of A Membrane Protein
pdb|3UDC|B Chain B, Crystal Structure Of A Membrane Protein
pdb|3UDC|C Chain C, Crystal Structure Of A Membrane Protein
pdb|3UDC|D Chain D, Crystal Structure Of A Membrane Protein
pdb|3UDC|E Chain E, Crystal Structure Of A Membrane Protein
pdb|3UDC|F Chain F, Crystal Structure Of A Membrane Protein
pdb|3UDC|G Chain G, Crystal Structure Of A Membrane Protein
Length = 285
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 45 DLQKEAVDIAIAA----FEKNSVEKDVAERIKKDFDKKH 79
D+Q + I + A +K +VE+D+ R+KK FD+K+
Sbjct: 226 DMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKN 264
>pdb|1YB3|A Chain A, Conserved Hypothetical Protein Pfu-178653-001 From
Pyrococcus Furiosus
Length = 175
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 4 ETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSV 63
E K A VKP + V + G + A KE+L KE ++ I AFEK +
Sbjct: 59 EEXKYPHPAFAVKPGGE-----VGATPQGFYFVF--AFPKEELSKEFIEDVIRAFEKLFI 111
Query: 64 EKDVAERIKKDFDKKHGP-----TWHCIVGSN 90
AE +DF P W IV S+
Sbjct: 112 YG--AENFLEDFYNFEHPISGDEVWDRIVNSD 141
>pdb|1PZX|A Chain A, Hypothetical Protein Apc36103 From Bacillus
Stearothermophilus: A Lipid Binding Protein
pdb|1PZX|B Chain B, Hypothetical Protein Apc36103 From Bacillus
Stearothermophilus: A Lipid Binding Protein
Length = 289
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCI--VGSN 90
KR++ + +DLQK+ + I+ A E+ ++E +K+ ++ HG T + +GS
Sbjct: 215 KRMVELMGERGDDLQKQTIGISHADDEETALE------LKQMIEETHGCTRFFLSDIGSA 268
Query: 91 FGSYVTHETNHFVYFYLDQ 109
G++ T F+L++
Sbjct: 269 IGAHAGPGT--IALFFLNK 285
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 41 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 80
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2
Kinase In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2
Kinase In Complex With Arq 069
Length = 313
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 38 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 77
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 36 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 75
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase
Domains Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated
Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With
Atp Analog And Substrate Peptide
Length = 334
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 26/40 (65%)
Query: 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERI 71
G+ ++ ++ + +D KEAV +A+ + ++ EKD+++ +
Sbjct: 49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLV 88
>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate
Respiration
pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
Dissimilatory Sulfite Reductase Bound To Dsrc Provides
Novel Insights Into The Mechanism Of Sulfate
Respiration
Length = 381
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 64 EKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHE 98
EK +A RI +K + ++ NFGS++ HE
Sbjct: 11 EKPMANRITDIGPRKFDEFFPPVIAKNFGSWLYHE 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,274,034
Number of Sequences: 62578
Number of extensions: 116597
Number of successful extensions: 338
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 44
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)