Query 033477
Match_columns 118
No_of_seqs 119 out of 546
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00059 dynein light chain; P 100.0 2.4E-39 5.2E-44 218.6 12.2 86 33-118 5-90 (90)
2 KOG3430 Dynein light chain typ 100.0 3.5E-39 7.6E-44 216.1 11.5 87 32-118 3-90 (90)
3 PLN03058 dynein light chain ty 100.0 4.5E-38 9.8E-43 224.3 12.2 90 29-118 30-122 (128)
4 PF01221 Dynein_light: Dynein 100.0 6.6E-38 1.4E-42 210.3 10.3 87 32-118 3-89 (89)
5 PF04155 Ground-like: Ground-l 97.1 0.0087 1.9E-07 38.7 8.5 54 62-116 22-76 (76)
6 PF05075 DUF684: Protein of un 86.5 6.1 0.00013 32.2 8.5 54 64-117 188-251 (345)
7 PF13742 tRNA_anti_2: OB-fold 71.9 17 0.00038 24.2 5.7 49 65-117 5-59 (99)
8 TIGR00237 xseA exodeoxyribonuc 71.2 10 0.00022 31.9 5.3 49 65-117 3-55 (432)
9 PF15650 Tox-REase-9: Restrict 67.4 4.8 0.0001 27.2 2.1 17 72-88 71-87 (89)
10 PF10703 MoaF: Molybdenum cofa 66.5 11 0.00024 30.2 4.3 32 82-116 182-214 (265)
11 COG1570 XseA Exonuclease VII, 64.7 13 0.00028 31.8 4.7 49 65-117 9-61 (440)
12 PRK00286 xseA exodeoxyribonucl 61.2 22 0.00049 29.5 5.5 50 64-117 8-61 (438)
13 PF12006 DUF3500: Protein of u 60.9 59 0.0013 26.4 7.7 43 37-79 216-261 (313)
14 PF06150 ChaB: ChaB; InterPro 57.6 33 0.00072 21.0 4.5 44 40-84 7-54 (57)
15 PF12652 CotJB: CotJB protein; 56.3 6.7 0.00014 25.7 1.2 16 67-82 41-56 (78)
16 PF06153 DUF970: Protein of un 49.1 2.9 6.2E-05 29.2 -1.5 40 4-60 27-66 (109)
17 PRK13007 succinyl-diaminopimel 46.0 1.1E+02 0.0023 24.1 6.8 39 42-80 1-42 (352)
18 KOG2451 Aldehyde dehydrogenase 45.8 52 0.0011 28.3 5.2 45 32-76 48-94 (503)
19 PF11858 DUF3378: Domain of un 45.4 29 0.00062 22.7 3.0 21 98-118 28-48 (81)
20 PF05184 SapB_1: Saposin-like 44.1 51 0.0011 17.6 4.2 30 46-75 6-35 (39)
21 PF08776 VASP_tetra: VASP tetr 38.9 43 0.00092 19.4 2.6 31 45-77 7-37 (40)
22 TIGR02084 leud 3-isopropylmala 38.6 27 0.00058 25.7 2.2 30 65-94 27-60 (156)
23 PRK10667 Hha toxicity attenuat 38.1 44 0.00095 23.8 3.1 34 46-79 51-84 (122)
24 cd00858 GlyRS_anticodon GlyRS 38.1 1.2E+02 0.0027 20.3 6.7 78 13-90 6-87 (121)
25 cd02426 Pol_gamma_b_Cterm C-te 37.7 1.4E+02 0.003 20.7 5.9 74 17-90 12-93 (128)
26 PRK14023 homoaconitate hydrata 36.1 48 0.001 24.5 3.2 30 65-94 29-62 (166)
27 PF12362 DUF3646: DNA polymera 35.7 43 0.00094 23.4 2.8 29 64-92 48-76 (117)
28 PF06457 Ectatomin: Ectatomin; 35.0 16 0.00036 20.1 0.4 14 64-77 21-34 (34)
29 PF14900 DUF4493: Domain of un 34.1 94 0.002 23.5 4.7 37 73-109 119-160 (235)
30 PF10757 YbaJ: Biofilm formati 32.7 50 0.0011 23.5 2.7 34 46-79 51-84 (122)
31 PF08958 DUF1871: Domain of un 32.6 44 0.00095 21.9 2.3 30 52-81 25-54 (79)
32 PF08202 MIS13: Mis12-Mtw1 pro 31.4 1.3E+02 0.0028 24.1 5.3 78 5-84 22-127 (301)
33 PF06763 Minor_tail_Z: Prophag 31.0 1.8E+02 0.0039 21.9 5.7 66 9-75 117-183 (189)
34 PF08006 DUF1700: Protein of u 30.4 1.3E+02 0.0028 21.8 4.8 36 40-75 15-64 (181)
35 PF06925 MGDG_synth: Monogalac 30.4 54 0.0012 23.3 2.7 27 65-91 2-28 (169)
36 PF00352 TBP: Transcription fa 29.2 79 0.0017 20.3 3.1 24 95-118 31-58 (86)
37 PF12550 GCR1_C: Transcription 28.6 18 0.00039 23.3 -0.1 12 73-84 29-40 (81)
38 cd03538 Rieske_RO_Alpha_AntDO 28.4 1.4E+02 0.0031 21.1 4.6 44 70-117 10-53 (146)
39 COG0655 WrbA Multimeric flavod 27.9 46 0.00099 24.7 2.0 56 40-95 59-120 (207)
40 cd00197 VHS_ENTH_ANTH VHS, ENT 27.6 33 0.00071 23.0 1.0 20 64-86 35-54 (115)
41 PF06840 DUF1241: Protein of u 26.6 42 0.00092 24.8 1.5 13 65-77 123-135 (154)
42 KOG1573 Aldehyde reductase [Ge 26.6 2.7E+02 0.0059 21.2 5.8 59 40-100 91-161 (204)
43 PF00838 TCTP: Translationally 26.4 2.7E+02 0.0058 20.5 6.2 46 66-118 113-162 (165)
44 cd03472 Rieske_RO_Alpha_BPDO_l 26.3 1.2E+02 0.0026 21.0 3.8 39 75-117 1-39 (128)
45 PF08594 UPF0300: Uncharacteri 25.2 2.1E+02 0.0044 22.4 5.1 57 42-98 37-111 (215)
46 cd01579 AcnA_Bact_Swivel Bacte 24.8 47 0.001 23.3 1.5 17 78-94 45-61 (121)
47 PF09868 DUF2095: Uncharacteri 24.5 1.4E+02 0.003 21.4 3.7 19 63-81 93-115 (128)
48 KOG4194 Membrane glycoprotein 24.1 42 0.00091 30.6 1.3 21 80-100 586-606 (873)
49 PF07742 BTG: BTG family; Int 23.8 98 0.0021 21.6 2.9 19 66-84 29-47 (118)
50 PF09477 Type_III_YscG: Bacter 23.7 1.7E+02 0.0037 20.7 4.1 33 42-74 1-35 (116)
51 PF08015 Pheromone: Fungal mat 22.9 47 0.001 20.7 1.0 13 75-87 55-69 (69)
52 COG1362 LAP4 Aspartyl aminopep 22.8 3.4E+02 0.0073 23.5 6.4 65 43-110 2-73 (437)
53 PF10440 WIYLD: Ubiquitin-bind 22.6 76 0.0017 20.1 2.0 43 49-91 9-51 (65)
54 COG1498 SIK1 Protein implicate 22.6 1E+02 0.0023 26.1 3.3 41 37-77 199-239 (395)
55 COG1352 CheR Methylase of chem 22.1 91 0.002 24.8 2.8 48 32-85 127-178 (268)
56 KOG3165 Predicted nucleic-acid 22.0 79 0.0017 24.0 2.2 25 67-91 48-72 (195)
57 KOG1569 50S ribosomal protein 21.2 1.7E+02 0.0038 24.1 4.2 54 36-93 195-262 (323)
58 PRK00083 frr ribosome recyclin 21.1 2.6E+02 0.0056 20.9 4.9 44 31-74 94-142 (185)
59 PF10655 DUF2482: Hypothetical 21.0 79 0.0017 21.7 1.9 47 40-92 6-65 (100)
60 cd01578 AcnA_Mitochon_Swivel M 20.7 54 0.0012 24.1 1.1 16 79-94 67-82 (149)
61 PF15571 Imm25: Immunity prote 20.4 63 0.0014 23.1 1.4 22 65-86 18-39 (124)
No 1
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=2.4e-39 Score=218.60 Aligned_cols=86 Identities=65% Similarity=1.114 Sum_probs=83.8
Q ss_pred CceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q 033477 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAV 112 (118)
Q Consensus 33 ~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~ 112 (118)
.++.|+.+|||++||++|++++.+|+++|+.++|||++||+.||++|||+||||||++|||++||++++||||++++++|
T Consensus 5 ~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~~v 84 (90)
T PTZ00059 5 RKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAI 84 (90)
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeC
Q 033477 113 LLFKSG 118 (118)
Q Consensus 113 LlfKtg 118 (118)
||||+|
T Consensus 85 LlfK~~ 90 (90)
T PTZ00059 85 LLFKSG 90 (90)
T ss_pred EEEecC
Confidence 999997
No 2
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=100.00 E-value=3.5e-39 Score=216.06 Aligned_cols=87 Identities=60% Similarity=1.062 Sum_probs=84.1
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCE
Q 033477 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNS-VEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQK 110 (118)
Q Consensus 32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~-~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~ 110 (118)
...+.|+.+|||++||++|++++.+|+++|+ ++++||..||+.||++||++||||||++|||+|||+.++||||++|.+
T Consensus 3 ~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l 82 (90)
T KOG3430|consen 3 ERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVL 82 (90)
T ss_pred CccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceE
Confidence 4568899999999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 033477 111 AVLLFKSG 118 (118)
Q Consensus 111 ~~LlfKtg 118 (118)
+|||||++
T Consensus 83 ~illfK~~ 90 (90)
T KOG3430|consen 83 AILLFKCA 90 (90)
T ss_pred EEEEEecC
Confidence 99999985
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=4.5e-38 Score=224.34 Aligned_cols=90 Identities=40% Similarity=0.720 Sum_probs=85.7
Q ss_pred CCCCCceEEeeCCCCHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEE
Q 033477 29 SQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNS---VEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYF 105 (118)
Q Consensus 29 ~~~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~---~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F 105 (118)
+..+.++.|+.+|||++||++|+++|.+|+++++ +++|||.+||+.||++|||+||||||++|||+|||++++||||
T Consensus 30 ~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF 109 (128)
T PLN03058 30 QKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYF 109 (128)
T ss_pred hccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEE
Confidence 3457899999999999999999999999999984 5799999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEEeeC
Q 033477 106 YLDQKAVLLFKSG 118 (118)
Q Consensus 106 ~~~~~~~LlfKtg 118 (118)
++|+++|||||||
T Consensus 110 ~ig~~aiLLfKt~ 122 (128)
T PLN03058 110 SIDKVYILLFKTA 122 (128)
T ss_pred EECCEEEEEEecc
Confidence 9999999999996
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=6.6e-38 Score=210.31 Aligned_cols=87 Identities=52% Similarity=0.900 Sum_probs=82.5
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEE
Q 033477 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKA 111 (118)
Q Consensus 32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~ 111 (118)
..+++|+.+|||++||++|+++|.+|++++++++++|++||+.||++|||+||||||++|||++||+++++|||++++++
T Consensus 3 ~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~~ 82 (89)
T PF01221_consen 3 ENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNIA 82 (89)
T ss_dssp SCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTEE
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeC
Q 033477 112 VLLFKSG 118 (118)
Q Consensus 112 ~LlfKtg 118 (118)
|||||||
T Consensus 83 ~li~kt~ 89 (89)
T PF01221_consen 83 FLIFKTQ 89 (89)
T ss_dssp EEEEEE-
T ss_pred EEEEecC
Confidence 9999996
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.06 E-value=0.0087 Score=38.67 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHhcccCCCceEEEEeCC-ceeeEEecCCcEEEEEeCCEEEEEEe
Q 033477 62 SVEKDVAERIKKDFDKKHGPTWHCIVGSN-FGSYVTHETNHFVYFYLDQKAVLLFK 116 (118)
Q Consensus 62 ~~ekdiA~~IK~~lD~~yG~~WhcIVGk~-Fgs~vthe~~~~i~F~~~~~~~LlfK 116 (118)
.+..++++.|.+.+.++||+.+-||++++ |.....+. ..|.-...++...++|+
T Consensus 22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 55678999999999999999999999995 65554444 78888899999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=86.47 E-value=6.1 Score=32.24 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcccCC-CceEEEEeC------C--ceeeEEecCCcEEE-EEeCCEEEEEEee
Q 033477 64 EKDVAERIKKDFDKKHG-PTWHCIVGS------N--FGSYVTHETNHFVY-FYLDQKAVLLFKS 117 (118)
Q Consensus 64 ekdiA~~IK~~lD~~yG-~~WhcIVGk------~--Fgs~vthe~~~~i~-F~~~~~~~LlfKt 117 (118)
..+.|..||+.||+-.- -.+-+||-. + |-.+..+...++|. |.-|+..++||||
T Consensus 188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS 251 (345)
T PF05075_consen 188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS 251 (345)
T ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence 46789999999999644 357888833 1 11222345666666 5678999999998
No 7
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=71.86 E-value=17 Score=24.21 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhccc--CCCceEEEEeCCceeeEEecCCcEEEEEeC----CEEEEEEee
Q 033477 65 KDVAERIKKDFDKK--HGPTWHCIVGSNFGSYVTHETNHFVYFYLD----QKAVLLFKS 117 (118)
Q Consensus 65 kdiA~~IK~~lD~~--yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~----~~~~LlfKt 117 (118)
.++.++||+.++.. ++..| |.|+ =|.++.-.+..+||.+. .+...+|++
T Consensus 5 s~l~~~ik~~le~~~~~~~vw--V~GE--Is~~~~~~~gh~YftLkD~~a~i~~~~~~~ 59 (99)
T PF13742_consen 5 SELNNYIKDLLERDPPLPNVW--VEGE--ISNLKRHSSGHVYFTLKDEEASISCVIFRS 59 (99)
T ss_pred HHHHHHHHHHHhcCCCcCCEE--EEEE--EeecEECCCceEEEEEEcCCcEEEEEEEHH
Confidence 57899999999998 56888 6777 34445447888999983 356677764
No 8
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=71.20 E-value=10 Score=31.89 Aligned_cols=49 Identities=24% Similarity=0.414 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeC----CEEEEEEee
Q 033477 65 KDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLD----QKAVLLFKS 117 (118)
Q Consensus 65 kdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~----~~~~LlfKt 117 (118)
.++..+||..||..|+..| |.|+ =|.++.-..-.+||.+. .+...+|++
T Consensus 3 sel~~~ik~~le~~~~~v~--V~GE--isn~~~~~sGH~YFtLkD~~a~i~~vmf~~ 55 (432)
T TIGR00237 3 SELNAQIKALLEATFLQVW--IQGE--ISNFTQPVSGHWYFTLKDENAQVRCVMFRG 55 (432)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEE--ecCCeeCCCceEEEEEEcCCcEEEEEEEcC
Confidence 4688999999999999888 6677 23333335557999984 467888876
No 9
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=67.44 E-value=4.8 Score=27.20 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=14.8
Q ss_pred HHHhcccCCCceEEEEe
Q 033477 72 KKDFDKKHGPTWHCIVG 88 (118)
Q Consensus 72 K~~lD~~yG~~WhcIVG 88 (118)
|+.|...||.+|-|||-
T Consensus 71 ~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 71 KQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHhcCccCCCeeEEee
Confidence 56799999999999973
No 10
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=66.52 E-value=11 Score=30.17 Aligned_cols=32 Identities=19% Similarity=0.610 Sum_probs=23.9
Q ss_pred ceEEEEeCCceeeEEecCCcEEEEEeC-CEEEEEEe
Q 033477 82 TWHCIVGSNFGSYVTHETNHFVYFYLD-QKAVLLFK 116 (118)
Q Consensus 82 ~WhcIVGk~Fgs~vthe~~~~i~F~~~-~~~~LlfK 116 (118)
+|||+.|..=|-. +....-+|++. ++.++.|+
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~Wr 214 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWR 214 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEE
Confidence 7999999965533 55777888885 67777776
No 11
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=64.66 E-value=13 Score=31.81 Aligned_cols=49 Identities=27% Similarity=0.538 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeC----CEEEEEEee
Q 033477 65 KDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLD----QKAVLLFKS 117 (118)
Q Consensus 65 kdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~----~~~~LlfKt 117 (118)
.++..+||..||..+|..| |-|+ =|.+++-+....||.+. .+...+|+.
T Consensus 9 Seln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~ 61 (440)
T COG1570 9 SELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKG 61 (440)
T ss_pred HHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcC
Confidence 5789999999999999999 6777 67778666669999995 356777764
No 12
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=61.20 E-value=22 Score=29.54 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeC----CEEEEEEee
Q 033477 64 EKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLD----QKAVLLFKS 117 (118)
Q Consensus 64 ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~----~~~~LlfKt 117 (118)
-.++..+||..||..++..| |.|+ =|.+++-..-.+||.+. .+...+|++
T Consensus 8 vsel~~~ik~~le~~~~~v~--v~gE--is~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~ 61 (438)
T PRK00286 8 VSELNRYVKSLLERDLGQVW--VRGE--ISNFTRHSSGHWYFTLKDEIAQIRCVMFKG 61 (438)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEE--eCCCeeCCCCeEEEEEEcCCcEEEEEEEcC
Confidence 35789999999999988888 6677 33344445667999984 478888885
No 13
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=60.94 E-value=59 Score=26.36 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=31.6
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHhcCCchH--HHHHHH-HHHhcccC
Q 033477 37 IKSADMKEDLQKEAVDIAIAAFEKNSVEK--DVAERI-KKDFDKKH 79 (118)
Q Consensus 37 I~~sdM~~emq~~~i~~a~~al~~~~~ek--diA~~I-K~~lD~~y 79 (118)
|..+||+.+.|+.+..++..-+..++.+. ..-+.| +..||+.|
T Consensus 216 l~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~t~ 261 (313)
T PF12006_consen 216 LAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDETY 261 (313)
T ss_pred cChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccceE
Confidence 78899999999999999999998887532 122233 66666654
No 14
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=57.62 E-value=33 Score=21.01 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCchH---HHH-HHHHHHhcccCCCceE
Q 033477 40 ADMKEDLQKEAVDIAIAAFEKNSVEK---DVA-ERIKKDFDKKHGPTWH 84 (118)
Q Consensus 40 sdM~~emq~~~i~~a~~al~~~~~ek---diA-~~IK~~lD~~yG~~Wh 84 (118)
..||+.=|+--++....|++.|.++. .+| ..+|+...+ -++.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 46777777777777788888997653 244 679999999 788896
No 15
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=56.26 E-value=6.7 Score=25.73 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=12.8
Q ss_pred HHHHHHHHhcccCCCc
Q 033477 67 VAERIKKDFDKKHGPT 82 (118)
Q Consensus 67 iA~~IK~~lD~~yG~~ 82 (118)
.-+.+++.+.++|||-
T Consensus 41 ~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 41 QRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3457889999999984
No 16
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=49.06 E-value=2.9 Score=29.22 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=25.7
Q ss_pred hhhhhccccccccCCCCCCCcccccCCCCCceEEeeCCCCHHHHHHHHHHHHHHHhc
Q 033477 4 ETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK 60 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~~sdM~~emq~~~i~~a~~al~~ 60 (118)
-||+|++|||-+++|.- ...--+++..++++++.++..++
T Consensus 27 ~TkLsstGGFLr~GNtT-----------------lliGvede~v~~vl~iIk~~c~~ 66 (109)
T PF06153_consen 27 VTKLSSTGGFLREGNTT-----------------LLIGVEDEKVDEVLEIIKENCKK 66 (109)
T ss_dssp EEEEEEEETTTTEEEEE-----------------EEEEEEGGGHHHHHHHHHHHH--
T ss_pred EEEEecccceeccCCEE-----------------EEEEecHHHHHHHHHHHHHhhcC
Confidence 38999999999887641 11222456667777777766654
No 17
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=45.96 E-value=1.1e+02 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHhcccCC
Q 033477 42 MKEDLQKEAVDIAIAAFEKNSV---EKDVAERIKKDFDKKHG 80 (118)
Q Consensus 42 M~~emq~~~i~~a~~al~~~~~---ekdiA~~IK~~lD~~yG 80 (118)
|+.+...++++...++++-... |.++|++|++.|++.+|
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~ 42 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRALPH 42 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcC
Confidence 4556677888888888876543 67899999999998633
No 18
>KOG2451 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=45.77 E-value=52 Score=28.32 Aligned_cols=45 Identities=29% Similarity=0.366 Sum_probs=34.9
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHhc
Q 033477 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSV--EKDVAERIKKDFD 76 (118)
Q Consensus 32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~--ekdiA~~IK~~lD 76 (118)
..++.=.-.||+-+.-+++|+.|.+|++.|.+ .++-++.|+++.|
T Consensus 48 ~geii~~V~~~~V~e~~kAI~aA~EaF~s~~~~takeRs~lLrkwy~ 94 (503)
T KOG2451|consen 48 NGEIIGKVADMTVEEAEKAIDAAYEAFKSYRNLTAKERSALLRKWYE 94 (503)
T ss_pred ccchhhcccCCcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 45566688999999999999999999999875 3455555555544
No 19
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=45.40 E-value=29 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=16.3
Q ss_pred cCCcEEEEEeCCEEEEEEeeC
Q 033477 98 ETNHFVYFYLDQKAVLLFKSG 118 (118)
Q Consensus 98 e~~~~i~F~~~~~~~LlfKtg 118 (118)
.++..+.++.++..|.+|+||
T Consensus 28 ~p~~~f~aK~~~~tIt~Y~SG 48 (81)
T PF11858_consen 28 PPYAVFQAKYNGVTITAYKSG 48 (81)
T ss_dssp -TTEEEEEEETTEEEEEETTS
T ss_pred CCCEEEEEeCCCeEEEEEeCC
Confidence 345556688899999999987
No 20
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=44.14 E-value=51 Score=17.61 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 033477 46 LQKEAVDIAIAAFEKNSVEKDVAERIKKDF 75 (118)
Q Consensus 46 mq~~~i~~a~~al~~~~~ekdiA~~IK~~l 75 (118)
.-+.++..+...++...++.+|.++|++.-
T Consensus 6 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C 35 (39)
T PF05184_consen 6 ICKFVVKEIEKLLKNNKTEEEIKKALEKAC 35 (39)
T ss_dssp HHHHHHHHHHHHHHSTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 456788888999988888888888887643
No 21
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=38.87 E-value=43 Score=19.40 Aligned_cols=31 Identities=16% Similarity=0.417 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 033477 45 DLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (118)
Q Consensus 45 emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~ 77 (118)
.+++++++.++.-+++.+ .+|-..|++.|.+
T Consensus 7 ~~KqEIL~EvrkEl~K~K--~EIIeA~~~eL~r 37 (40)
T PF08776_consen 7 RLKQEILEEVRKELQKVK--EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 478888888888887764 5677778887754
No 22
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=38.59 E-value=27 Score=25.69 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhc----ccCCCceEEEEeCCceee
Q 033477 65 KDVAERIKKDFD----KKHGPTWHCIVGSNFGSY 94 (118)
Q Consensus 65 kdiA~~IK~~lD----~~yG~~WhcIVGk~Fgs~ 94 (118)
.++|+++-..+| +++.+..-+|.|+||||=
T Consensus 27 ~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~G 60 (156)
T TIGR02084 27 KELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCG 60 (156)
T ss_pred HHHHhhhhccCChhHHhhcCCCCEEEccCcccCC
Confidence 445655555555 345677888889999964
No 23
>PRK10667 Hha toxicity attenuator; Provisional
Probab=38.14 E-value=44 Score=23.80 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC
Q 033477 46 LQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKH 79 (118)
Q Consensus 46 mq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~y 79 (118)
.-+.|...+..--=||+.+.+++..|-++||++|
T Consensus 51 LIEHIa~f~~~fKIKYp~~~~l~~~ideYLDeTy 84 (122)
T PRK10667 51 LIEHIATFALNFKIKYPEDSKLIEQIDEYLDDTY 84 (122)
T ss_pred HHHHHHHHHHHhhccCCcHhhHHHHHHHHHHHHH
Confidence 4445555555555578888999999999999987
No 24
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.11 E-value=1.2e+02 Score=20.33 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=43.7
Q ss_pred ccccCC-CCCCCcccccCCCCCceEEeeCCCCHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHhc--ccCCCceEEEEe
Q 033477 13 LVVKPN-SDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEK-NSVEKDVAERIKKDFD--KKHGPTWHCIVG 88 (118)
Q Consensus 13 ~~~~~~-~~~~~~~~~~~~~~~~i~I~~sdM~~emq~~~i~~a~~al~~-~~~ekdiA~~IK~~lD--~~yG~~WhcIVG 88 (118)
++.|++ +-+-...+-+..++.++.|+..+=+++....+.+++...-+. +..+-+....+++.|. ++.|-.|-+|||
T Consensus 6 ~~~~~~~~~~~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~~sl~kqlk~A~k~g~~~~iiiG 85 (121)
T cd00858 6 FRVREGDEGRIVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSGSIGRRYARQDEIGTPFCVTVD 85 (121)
T ss_pred eecccCCCccEEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHhHhcCCCEEEEEC
Confidence 444443 333444555555677777776542266677777776665332 2222111134444444 367999999999
Q ss_pred CC
Q 033477 89 SN 90 (118)
Q Consensus 89 k~ 90 (118)
.+
T Consensus 86 ~~ 87 (121)
T cd00858 86 FD 87 (121)
T ss_pred cC
Confidence 74
No 25
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=37.69 E-value=1.4e+02 Score=20.75 Aligned_cols=74 Identities=3% Similarity=0.057 Sum_probs=41.4
Q ss_pred CCCCCCCcccccCCCCCceEEeeCCCCHHHHHHHHHHHHHHHhcCCc-----hHHH-HHHHHHHh-c-ccCCCceEEEEe
Q 033477 17 PNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSV-----EKDV-AERIKKDF-D-KKHGPTWHCIVG 88 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~-----ekdi-A~~IK~~l-D-~~yG~~WhcIVG 88 (118)
.+.+++...+-+.++|-++.|+......+-..+..+...+.|.+.+. .++- ...+-..| | ..-|-++.++||
T Consensus 12 ~~~d~~Gl~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~IG 91 (128)
T cd02426 12 KGRQRQVLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLIS 91 (128)
T ss_pred cCCCCcEEECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEEEC
Confidence 34567788888889999999988765544344433333333433321 1110 01122211 1 123789999999
Q ss_pred CC
Q 033477 89 SN 90 (118)
Q Consensus 89 k~ 90 (118)
+.
T Consensus 92 ~~ 93 (128)
T cd02426 92 EQ 93 (128)
T ss_pred CC
Confidence 85
No 26
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=36.07 E-value=48 Score=24.54 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhc----ccCCCceEEEEeCCceee
Q 033477 65 KDVAERIKKDFD----KKHGPTWHCIVGSNFGSY 94 (118)
Q Consensus 65 kdiA~~IK~~lD----~~yG~~WhcIVGk~Fgs~ 94 (118)
.++++++-..+| +++.+..-+|.|+||||=
T Consensus 29 ~~l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~G 62 (166)
T PRK14023 29 DRFHNYAFAHLRPEFASTVRPGDILVAGRNFGLG 62 (166)
T ss_pred HHHHhhhccCCChhhHhhcCCCCEEEccCcccCC
Confidence 445555444444 455667788888999964
No 27
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=35.73 E-value=43 Score=23.40 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCce
Q 033477 64 EKDVAERIKKDFDKKHGPTWHCIVGSNFG 92 (118)
Q Consensus 64 ekdiA~~IK~~lD~~yG~~WhcIVGk~Fg 92 (118)
.+++|..|...|..--|..|.|.+.+.=|
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 36899999999999999999999998644
No 28
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=34.99 E-value=16 Score=20.12 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhcc
Q 033477 64 EKDVAERIKKDFDK 77 (118)
Q Consensus 64 ekdiA~~IK~~lD~ 77 (118)
+.+||.+||+..|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T PF06457_consen 21 SGSIATMIKRKCDK 34 (34)
T ss_dssp SCCHHHHHHHHCH-
T ss_pred cccHHHHHHHHhCC
Confidence 46799999998764
No 29
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=34.13 E-value=94 Score=23.51 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=28.5
Q ss_pred HHhcccCCCceEEEEeCCceeeEEe--cCC---cEEEEEeCC
Q 033477 73 KDFDKKHGPTWHCIVGSNFGSYVTH--ETN---HFVYFYLDQ 109 (118)
Q Consensus 73 ~~lD~~yG~~WhcIVGk~Fgs~vth--e~~---~~i~F~~~~ 109 (118)
..|.+.|+..|++-|-..-+..+++ ... ...||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 4466677777999999865667777 555 889999987
No 30
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=32.75 E-value=50 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC
Q 033477 46 LQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKH 79 (118)
Q Consensus 46 mq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~y 79 (118)
.-+.|...+..--=||+++.++...|-++||++|
T Consensus 51 LIEHIA~F~~~fKIKYp~~~~l~~~ideYLDeTy 84 (122)
T PF10757_consen 51 LIEHIAAFIWNFKIKYPDESDLIELIDEYLDETY 84 (122)
T ss_pred HHHHHHHHHHhheeccCcHhhHHHHHHHHHHHHH
Confidence 4444544444444568888999999999999987
No 31
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=32.62 E-value=44 Score=21.88 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcccCCC
Q 033477 52 DIAIAAFEKNSVEKDVAERIKKDFDKKHGP 81 (118)
Q Consensus 52 ~~a~~al~~~~~ekdiA~~IK~~lD~~yG~ 81 (118)
..+..++....+..++|+.|+.-|..-||.
T Consensus 25 ~~Iv~~v~~~~~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 25 NDIVQAVHENDDPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcc
Confidence 344566777777788999999999888874
No 32
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=31.37 E-value=1.3e+02 Score=24.07 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=47.3
Q ss_pred hhhhccccccccCCCCCCCcccccCCCCCce------EEeeCCCCHH--HHHHHHHHHHHHHhcCC--------------
Q 033477 5 TKKSVTGALVVKPNSDDRKPTVAVSQSGKRI------IIKSADMKED--LQKEAVDIAIAAFEKNS-------------- 62 (118)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~I~~sdM~~e--mq~~~i~~a~~al~~~~-------------- 62 (118)
.|.||.|.-|+|-|+=-..- ....|+.+| .-|..|+|+. |++-.+=.+..|+++-.
T Consensus 22 ~RRSS~~~RGRR~Ssl~~~~--~~~~PH~dV~~~efYkhI~~~lpe~~RmrQLL~Wc~~ral~~~~~~~~~~~~~~~~~~ 99 (301)
T PF08202_consen 22 KRRSSLSQRGRRASSLINGG--SIASPHKDVPESEFYKHIDADLPEPRRMRQLLIWCFQRALQKKEKKSKSRSKSSGSED 99 (301)
T ss_pred hhhHhhhcCCCchhhhccCC--CcCCCCCCCCHHHHHhcccccCCchHHHHHHHHHHHHHHHhhccccccccccccCCCc
Confidence 47788888887766221111 122445665 5688889885 66666667778887776
Q ss_pred -chHHHHHHHHHHh-----cccCCCceE
Q 033477 63 -VEKDVAERIKKDF-----DKKHGPTWH 84 (118)
Q Consensus 63 -~ekdiA~~IK~~l-----D~~yG~~Wh 84 (118)
+-+-||..|++.| +..-.-.|-
T Consensus 100 ~~~~~~ar~I~~e~l~dl~~~~~~~sW~ 127 (301)
T PF08202_consen 100 SSAKLIARVIQEEFLKDLRDGSISISWF 127 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 0135777666655 444444553
No 33
>PF06763 Minor_tail_Z: Prophage minor tail protein Z (GPZ); InterPro: IPR010633 This family is represented by bacteriopage lambda GpZ, the minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.98 E-value=1.8e+02 Score=21.87 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=33.7
Q ss_pred cccccccc-CCCCCCCcccccCCCCCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 033477 9 VTGALVVK-PNSDDRKPTVAVSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDF 75 (118)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~l 75 (118)
..|||..+ .+|+++.---.+-...-.|++....+.+.+.+..-+.+.++++..- .+++...|+..|
T Consensus 117 ~~~aFia~~~nG~~~Vf~R~~gk~R~PI~vvkiP~~~plt~af~~~~~~~~~~~l-~k~l~~~l~~ql 183 (189)
T PF06763_consen 117 FPGAFIAQLKNGRWHVFQRVSGKARYPIEVVKIPLSEPLTEAFEEEVKRIIEEEL-PKELQKELKQQL 183 (189)
T ss_pred cccceeeccCCCCceeEEecCCCCcceeEEEecCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 35677766 4777665433111223347777777777654444444444443221 244444444444
No 34
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.39 E-value=1.3e+02 Score=21.79 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCC--------------chHHHHHHHHHHh
Q 033477 40 ADMKEDLQKEAVDIAIAAFEKNS--------------VEKDVAERIKKDF 75 (118)
Q Consensus 40 sdM~~emq~~~i~~a~~al~~~~--------------~ekdiA~~IK~~l 75 (118)
.+||++.++++++...+-++.-. +-+++|+.|+...
T Consensus 15 ~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 15 KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 36999999999998888776532 2356777777544
No 35
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.38 E-value=54 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcccCCCceEEEEeCCc
Q 033477 65 KDVAERIKKDFDKKHGPTWHCIVGSNF 91 (118)
Q Consensus 65 kdiA~~IK~~lD~~yG~~WhcIVGk~F 91 (118)
+..|+.|++.|.++||+...|.|.+-|
T Consensus 2 ~~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 2 NSAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 457999999999999999999988844
No 36
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=29.20 E-value=79 Score=20.31 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=16.7
Q ss_pred EEecCCc--EEEEEeC--CEEEEEEeeC
Q 033477 95 VTHETNH--FVYFYLD--QKAVLLFKSG 118 (118)
Q Consensus 95 vthe~~~--~i~F~~~--~~~~LlfKtg 118 (118)
..|+|.. .+.+++. ...++||+||
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sG 58 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSG 58 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTS
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCC
Confidence 4677773 3556664 6789999887
No 37
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=28.63 E-value=18 Score=23.29 Aligned_cols=12 Identities=33% Similarity=0.944 Sum_probs=9.9
Q ss_pred HHhcccCCCceE
Q 033477 73 KDFDKKHGPTWH 84 (118)
Q Consensus 73 ~~lD~~yG~~Wh 84 (118)
+.|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 357899999996
No 38
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=28.42 E-value=1.4e+02 Score=21.10 Aligned_cols=44 Identities=11% Similarity=0.328 Sum_probs=30.7
Q ss_pred HHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEEEee
Q 033477 70 RIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 117 (118)
Q Consensus 70 ~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~LlfKt 117 (118)
....+++.-|...|+.|.-. +.+ -+++.++-+.+++..++|+|.
T Consensus 10 ~~~~e~~~i~~~~W~~v~~~---~el-p~~G~~~~~~i~g~~i~v~r~ 53 (146)
T cd03538 10 IFALEMERLFGNAWIYVGHE---SQV-PNPGDYITTRIGDQPVVMVRH 53 (146)
T ss_pred HHHHHHHHHhhcCCEEEEEH---HHC-CCCCCEEEEEECCeeEEEEEC
Confidence 44566777788899986543 112 145778888888888888874
No 39
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=27.94 E-value=46 Score=24.71 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHh---cCCc-hHHHHHHHHHHhcccCCCceE--EEEeCCceeeE
Q 033477 40 ADMKEDLQKEAVDIAIAAFE---KNSV-EKDVAERIKKDFDKKHGPTWH--CIVGSNFGSYV 95 (118)
Q Consensus 40 sdM~~emq~~~i~~a~~al~---~~~~-ekdiA~~IK~~lD~~yG~~Wh--cIVGk~Fgs~v 95 (118)
|.+++++.+++.+...+|=- -.++ .-.++..+|..||+-+++.|. -.-|+-.+..+
T Consensus 59 c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~ 120 (207)
T COG0655 59 CVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFV 120 (207)
T ss_pred CCCCcccHHHHHHHHHHCCEEEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEE
Confidence 66666655555555444300 0111 346899999999998888888 45555444443
No 40
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=27.60 E-value=33 Score=22.97 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcccCCCceEEE
Q 033477 64 EKDVAERIKKDFDKKHGPTWHCI 86 (118)
Q Consensus 64 ekdiA~~IK~~lD~~yG~~WhcI 86 (118)
-+++++.|++.|+.+ .|+++
T Consensus 35 ~~~~~~~l~kRl~~~---~~~~~ 54 (115)
T cd00197 35 PKEAVDAIKKRINNK---NPHVV 54 (115)
T ss_pred HHHHHHHHHHHhcCC---cHHHH
Confidence 478999999999875 67654
No 41
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=26.63 E-value=42 Score=24.78 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcc
Q 033477 65 KDVAERIKKDFDK 77 (118)
Q Consensus 65 kdiA~~IK~~lD~ 77 (118)
|+||..||+-||.
T Consensus 123 K~IAsaIK~lLdA 135 (154)
T PF06840_consen 123 KEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999995
No 42
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=26.58 E-value=2.7e+02 Score=21.21 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCchH-----HHHHHHHHHhcccCC-CceEEEEeC------CceeeEEecCC
Q 033477 40 ADMKEDLQKEAVDIAIAAFEKNSVEK-----DVAERIKKDFDKKHG-PTWHCIVGS------NFGSYVTHETN 100 (118)
Q Consensus 40 sdM~~emq~~~i~~a~~al~~~~~ek-----diA~~IK~~lD~~yG-~~WhcIVGk------~Fgs~vthe~~ 100 (118)
.|+++...+.+.+.|-.+=+.|+++. .+-.-|-+-| .-+| |-|-| ||. .|+.++-|-..
T Consensus 91 PDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl-~f~GepQWAV-vGDTfpVGC~~~~s~V~~d~ 161 (204)
T KOG1573|consen 91 PDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVL-AFGGEPQWAV-VGDTFPVGCAFDASNVHHDK 161 (204)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH-HhcCCcceee-ecCcccccccccccceechh
Confidence 46777777788887777777787652 2334444555 3444 67865 555 34555544433
No 43
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=26.40 E-value=2.7e+02 Score=20.54 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEe--CC--EEEEEEeeC
Q 033477 66 DVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYL--DQ--KAVLLFKSG 118 (118)
Q Consensus 66 diA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~--~~--~~~LlfKtg 118 (118)
.++.++|.-|-+ | .-||..+|.+... .+..++..+ ++ -.++.||.|
T Consensus 113 ~a~~~vK~il~n-f-kd~qFf~Gesm~~-----dgmv~l~~yredg~tP~~~f~KdG 162 (165)
T PF00838_consen 113 GAQEFVKKILAN-F-KDYQFFTGESMDP-----DGMVALLNYREDGVTPYFIFFKDG 162 (165)
T ss_dssp HHHHHHHHHHHT-G-GGCEEEEETTCCT-----TS-EEEEEEETTSSSEEEEEEGGG
T ss_pred HhHHHHHHHHhh-c-cccccccccccCC-----CCcEEEEEecCCCccEEEEEEccc
Confidence 456777776655 4 5799999997664 455555444 33 366777754
No 44
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=26.32 E-value=1.2e+02 Score=20.97 Aligned_cols=39 Identities=8% Similarity=0.392 Sum_probs=26.1
Q ss_pred hcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEEEee
Q 033477 75 FDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 117 (118)
Q Consensus 75 lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~LlfKt 117 (118)
||+-|...|+.|.=.+ .+ -+++.+..+.+++..++||+.
T Consensus 1 ~~~i~~~~W~~v~~~~---el-~~~g~~~~~~~~~~~i~l~r~ 39 (128)
T cd03472 1 LERVFARSWLLLGHET---HI-PKAGDYLTTYMGEDPVIVVRQ 39 (128)
T ss_pred CcchhhCCCeEeEEHH---HC-CCCCCEEEEEECCceEEEEEC
Confidence 4666788999865442 11 144666777888888888874
No 45
>PF08594 UPF0300: Uncharacterised protein family (UPF0300); InterPro: IPR013903 This entry of proteins appear to be specific to Schizosaccharomyces pombe (Fission yeast).
Probab=25.20 E-value=2.1e+02 Score=22.38 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCC------------------ceEEEEeCCceeeEEec
Q 033477 42 MKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGP------------------TWHCIVGSNFGSYVTHE 98 (118)
Q Consensus 42 M~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~------------------~WhcIVGk~Fgs~vthe 98 (118)
-|+.+|+.+=..+..-+++-.....-.+.-|.--.+++|- .|-||+-++|-|++--+
T Consensus 37 Yp~~lq~aLW~AV~~yv~~~v~~~~yt~lh~~Aa~kriG~IRmyLV~P~Diy~v~~~~~W~~I~~k~F~c~I~l~ 111 (215)
T PF08594_consen 37 YPEFLQEALWKAVEHYVNNNVSSGGYTKLHKRAAQKRIGHIRMYLVDPHDIYSVDHSNSWIAICSKNFMCNIHLD 111 (215)
T ss_pred CcHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHhcCCeEEEEecccceEEecCCccEEEEecCcceEEEEec
Confidence 4566666555444444554333444444555555566663 69999999999987443
No 46
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=24.79 E-value=47 Score=23.32 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=12.5
Q ss_pred cCCCceEEEEeCCceee
Q 033477 78 KHGPTWHCIVGSNFGSY 94 (118)
Q Consensus 78 ~yG~~WhcIVGk~Fgs~ 94 (118)
++|..+-+|.|+||||=
T Consensus 45 ~~~~~~iiVaG~nFG~G 61 (121)
T cd01579 45 KAAGPGFIVGGENYGQG 61 (121)
T ss_pred ccCCCeEEEcCCcCCCC
Confidence 44556778889999964
No 47
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.52 E-value=1.4e+02 Score=21.40 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHhccc----CCC
Q 033477 63 VEKDVAERIKKDFDKK----HGP 81 (118)
Q Consensus 63 ~ekdiA~~IK~~lD~~----yG~ 81 (118)
...+.|+.|+..|.++ ||+
T Consensus 93 It~e~A~eLr~~L~~kGvr~fG~ 115 (128)
T PF09868_consen 93 ITPEEAKELRSILVKKGVRSFGS 115 (128)
T ss_pred CCHHHHHHHHHHHHHhhHHHhCC
Confidence 3578999999999987 665
No 48
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=24.10 E-value=42 Score=30.61 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=17.7
Q ss_pred CCceEEEEeCCceeeEEecCC
Q 033477 80 GPTWHCIVGSNFGSYVTHETN 100 (118)
Q Consensus 80 G~~WhcIVGk~Fgs~vthe~~ 100 (118)
.+-.||||..+|||.+++-.+
T Consensus 586 ~grYQCVvtN~FGStysqk~K 606 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAK 606 (873)
T ss_pred CceEEEEEecccCcchhheeE
Confidence 478999999999999877544
No 49
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=23.77 E-value=98 Score=21.61 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcccCCCceE
Q 033477 66 DVAERIKKDFDKKHGPTWH 84 (118)
Q Consensus 66 diA~~IK~~lD~~yG~~Wh 84 (118)
..|+.|.+.|-++|.+.|+
T Consensus 29 ~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 29 RFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3588899999999999997
No 50
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.74 E-value=1.7e+02 Score=20.68 Aligned_cols=33 Identities=15% Similarity=0.396 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCch--HHHHHHHHHH
Q 033477 42 MKEDLQKEAVDIAIAAFEKNSVE--KDVAERIKKD 74 (118)
Q Consensus 42 M~~emq~~~i~~a~~al~~~~~e--kdiA~~IK~~ 74 (118)
|+.+|+....++|.-+...+--+ +.||..|+..
T Consensus 1 M~~~l~~lLAElAL~atG~HcH~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 1 MNRELRRLLAELALMATGHHCHQEANTIADWLEQE 35 (116)
T ss_dssp --HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 78899999999999998887643 4577776653
No 51
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=22.90 E-value=47 Score=20.69 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=7.9
Q ss_pred hcccCCC--ceEEEE
Q 033477 75 FDKKHGP--TWHCIV 87 (118)
Q Consensus 75 lD~~yG~--~WhcIV 87 (118)
.|++.|+ +|-|||
T Consensus 55 ~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 55 FERRGGGGAGAFCVI 69 (69)
T ss_pred ccccCCCCceEEEeC
Confidence 3455444 688876
No 52
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=22.77 E-value=3.4e+02 Score=23.45 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCC-------CceEEEEeCCceeeEEecCCcEEEEEeCCE
Q 033477 43 KEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHG-------PTWHCIVGSNFGSYVTHETNHFVYFYLDQK 110 (118)
Q Consensus 43 ~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG-------~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~ 110 (118)
..++.+.+-+...+-+.+.+++...+.+|++.|++. | -.|+-=.|- .-|++-.....+.|.+++.
T Consensus 2 ~~~~~~~~~~~f~~FI~~spTpyh~v~~i~~~L~~~-Gf~~l~e~~~w~~~~gg--kyf~~r~gssliAf~ig~~ 73 (437)
T COG1362 2 MKEKKELAEDEFIDFISASPTPYHVVANIAERLLKA-GFRELEEKDAWKDKPGG--KYFVTRNGSSLIAFIIGKK 73 (437)
T ss_pred cchhhhhhHHHHHHHHHcCCChHHHHHHHHHHHHHc-CchhhhhhhcccccCCC--eEEEEcCCceEEEEEecCC
Confidence 344555555567788899999999999999999983 3 258877743 2334444447778888653
No 53
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=22.62 E-value=76 Score=20.14 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCc
Q 033477 49 EAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNF 91 (118)
Q Consensus 49 ~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~F 91 (118)
.=++.|.+++..++..++.+.-.=+.|=+-||+.|--|=-.+|
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y 51 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNY 51 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccH
Confidence 3456788899999886655444444444578888977654444
No 54
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=1e+02 Score=26.09 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=35.9
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 033477 37 IKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (118)
Q Consensus 37 I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~ 77 (118)
-...+|++.+...+...|....+.+..-+++.+||...|+.
T Consensus 199 SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~ 239 (395)
T COG1498 199 SMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSE 239 (395)
T ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999888778899999998874
No 55
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.10 E-value=91 Score=24.80 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=33.6
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCc---hHHH-HHHHHHHhcccCCCceEE
Q 033477 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSV---EKDV-AERIKKDFDKKHGPTWHC 85 (118)
Q Consensus 32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~---ekdi-A~~IK~~lD~~yG~~Whc 85 (118)
+.++.|..+|.+....+.|.. ..|+. .+.+ .++++++|++.-++.|++
T Consensus 127 ~~~~~I~AtDId~~~L~~A~~------G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 127 GFRVKILATDIDLSVLEKARA------GIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred CCceEEEEEECCHHHHHHHhc------CCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 458999999999986665533 23441 1333 567789999988877765
No 56
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.98 E-value=79 Score=24.02 Aligned_cols=25 Identities=32% Similarity=0.670 Sum_probs=20.8
Q ss_pred HHHHHHHHhcccCCCceEEEEeCCc
Q 033477 67 VAERIKKDFDKKHGPTWHCIVGSNF 91 (118)
Q Consensus 67 iA~~IK~~lD~~yG~~WhcIVGk~F 91 (118)
+++.+--..+...||++|+||-.||
T Consensus 48 ~~s~lffqyn~~L~PPy~vivDTNF 72 (195)
T KOG3165|consen 48 VPSALFFQYNTTLGPPYHVIVDTNF 72 (195)
T ss_pred cchhHHHhcccccCCCeEEEEecch
Confidence 5566777778899999999999876
No 57
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=21.18 E-value=1.7e+02 Score=24.11 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=30.7
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHHhcc------cCCCce-EEEEeC-Ccee
Q 033477 36 IIKSADMKEDLQKEAVDIAIAAFEKNSVE------KDVAERIKKDFDK------KHGPTW-HCIVGS-NFGS 93 (118)
Q Consensus 36 ~I~~sdM~~emq~~~i~~a~~al~~~~~e------kdiA~~IK~~lD~------~yG~~W-hcIVGk-~Fgs 93 (118)
.|-+.||-.+.+- +..-.=.+|++- .+|++.|-++..- .++..| ||.||+ +|.+
T Consensus 195 ~vA~Pdim~~l~~----Lr~iL~~r~Pn~k~gtvg~nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt~ 262 (323)
T KOG1569|consen 195 YVAHPDIMPELNR----LRKILGPRFPNPKRGTVGRNIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMTS 262 (323)
T ss_pred eeecchHHHHHHH----HHHHhcccCCCcccCccccchHHHHHHhhCCcccccccccCceeeeeeeeecCCH
Confidence 3445555554433 333333345542 4677777665543 456788 999999 6653
No 58
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.11 E-value=2.6e+02 Score=20.90 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCCceEEeeCCCCHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHH
Q 033477 31 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVE-----KDVAERIKKD 74 (118)
Q Consensus 31 ~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~e-----kdiA~~IK~~ 74 (118)
....+.|.-..|++|.+.+.++.+.+..++.... ++.-+.||+.
T Consensus 94 dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~ 142 (185)
T PRK00083 94 DGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKL 142 (185)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888999999999999999998887642 3444555543
No 59
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=21.02 E-value=79 Score=21.68 Aligned_cols=47 Identities=30% Similarity=0.500 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-------------cCCCceEEEEeCCce
Q 033477 40 ADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK-------------KHGPTWHCIVGSNFG 92 (118)
Q Consensus 40 sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~-------------~yG~~WhcIVGk~Fg 92 (118)
-||+++...+++. ++....-|+|..|+++=|- .|-+.=||++|+-|+
T Consensus 6 KdMTqeelr~lls------eK~~ELydL~~eI~kETeFdillfS~igv~~GD~~~ss~~alG~~~~ 65 (100)
T PF10655_consen 6 KDMTQEELRDLLS------EKNGELYDLANEIDKETEFDILLFSTIGVSNGDFISSSHCALGNPFG 65 (100)
T ss_pred hhhhHHHHHHHHH------HhhHHHHHHHHHhcccceeeeeeeeeeccccCccccccchhhccHHH
Confidence 4676654443322 1222235788888876442 234568999998665
No 60
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=20.66 E-value=54 Score=24.12 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.7
Q ss_pred CCCceEEEEeCCceee
Q 033477 79 HGPTWHCIVGSNFGSY 94 (118)
Q Consensus 79 yG~~WhcIVGk~Fgs~ 94 (118)
-|-.|-+|.|++||+=
T Consensus 67 ~g~~~iIVaG~nyG~G 82 (149)
T cd01578 67 HGIKWVVIGDENYGEG 82 (149)
T ss_pred cCCCeEEEccCccCCC
Confidence 3557999999999864
No 61
>PF15571 Imm25: Immunity protein 25
Probab=20.38 E-value=63 Score=23.12 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcccCCCceEEE
Q 033477 65 KDVAERIKKDFDKKHGPTWHCI 86 (118)
Q Consensus 65 kdiA~~IK~~lD~~yG~~WhcI 86 (118)
.++...||+.+|.-||..|+-|
T Consensus 18 r~~r~~Ik~~~~~~~g~~~~~I 39 (124)
T PF15571_consen 18 REIRNEIKELNDNLYGIEIESI 39 (124)
T ss_pred HHHHHHHHHHHccccccchhhh
Confidence 5678889999999999888754
Done!