Query 033477
Match_columns 118
No_of_seqs 119 out of 546
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 9.9E-42 3.4E-46 228.8 9.0 86 33-118 4-89 (89)
2 1yo3_A Dynein light chain 1; s 100.0 8.7E-41 3E-45 229.4 10.6 89 30-118 14-102 (102)
3 4ds1_A Dynein light chain 1, c 100.0 6.8E-41 2.3E-45 228.1 9.8 87 32-118 11-97 (97)
4 1eci_A Ectatomin; pore-forming 62.6 16 0.00055 19.6 4.4 33 43-77 4-36 (37)
5 2lc2_A AVR3A4; four helix bund 51.5 41 0.0014 22.5 5.5 67 2-79 11-95 (108)
6 1use_A VAsp, vasodilator-stimu 48.7 18 0.00061 20.7 2.9 34 44-79 10-43 (45)
7 3e9v_A Protein BTG2; B-cell tr 48.0 16 0.00054 24.8 3.1 44 41-84 1-48 (120)
8 1eci_B Ectatomin; pore-forming 43.2 7.5 0.00026 20.6 0.7 14 64-77 21-34 (34)
9 3id6_A NOP5, PRE mRNA splicing 39.9 27 0.00093 26.7 3.7 41 38-78 221-261 (268)
10 3ajm_A Programmed cell death p 29.2 38 0.0013 25.3 2.8 13 65-77 125-137 (213)
11 4fz4_A 0197-18KD, uncharacteri 28.3 90 0.0031 22.1 4.5 32 50-81 85-116 (154)
12 2z15_A Protein TOB1; human TOB 27.4 28 0.00096 23.9 1.7 44 41-84 7-52 (130)
13 3icx_A PRE mRNA splicing prote 26.7 59 0.002 24.7 3.6 39 39-77 89-127 (255)
14 1wj7_A Hypothetical protein (R 25.7 28 0.00095 23.2 1.4 34 54-89 57-91 (104)
15 3gzx_A Biphenyl dioxygenase su 25.4 1.5E+02 0.0051 23.9 6.0 45 69-117 44-88 (457)
16 2ozb_B U4/U6 small nuclear rib 25.2 66 0.0022 24.4 3.6 39 39-77 103-141 (260)
17 4evy_A Aminoglycoside N(6')-ac 23.4 1.1E+02 0.0037 19.3 4.1 42 32-77 19-60 (166)
18 1qwg_A PSL synthase;, (2R)-pho 23.1 1.8E+02 0.0061 22.0 5.7 47 38-87 107-167 (251)
19 3vp5_A Transcriptional regulat 21.8 1.4E+02 0.0048 19.6 4.6 29 41-69 8-40 (189)
20 3k6g_A Telomeric repeat-bindin 21.0 23 0.00079 23.8 0.3 43 43-85 6-63 (111)
21 3vba_A Isopropylmalate/citrama 20.8 34 0.0012 24.6 1.2 17 78-94 50-66 (176)
22 1wyo_A Protein EB3, microtubul 20.6 73 0.0025 22.5 2.8 42 39-81 71-128 (159)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=9.9e-42 Score=228.84 Aligned_cols=86 Identities=66% Similarity=1.145 Sum_probs=84.4
Q ss_pred CceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEE
Q 033477 33 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAV 112 (118)
Q Consensus 33 ~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~ 112 (118)
.+++|+.+|||++||++|+++|.+|+++|+.++|||++||+.||++|||+||||||++|||++||++++||||++|+++|
T Consensus 4 ~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~~i 83 (89)
T 3rjs_A 4 RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQVAV 83 (89)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTEEE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeC
Q 033477 113 LLFKSG 118 (118)
Q Consensus 113 LlfKtg 118 (118)
||||||
T Consensus 84 LlfKtg 89 (89)
T 3rjs_A 84 LLFKSG 89 (89)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999997
No 2
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=8.7e-41 Score=229.43 Aligned_cols=89 Identities=56% Similarity=0.994 Sum_probs=84.0
Q ss_pred CCCCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCC
Q 033477 30 QSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQ 109 (118)
Q Consensus 30 ~~~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~ 109 (118)
..+.+++|+.+|||++||++|+++|.+|+++|++++|||++||++||++|||+||||||++|||+|||++++||||++++
T Consensus 14 ~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~ 93 (102)
T 1yo3_A 14 LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ 93 (102)
T ss_dssp ----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred cCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeC
Q 033477 110 KAVLLFKSG 118 (118)
Q Consensus 110 ~~~LlfKtg 118 (118)
++|||||||
T Consensus 94 ~aiLlfKt~ 102 (102)
T 1yo3_A 94 VAILLFKSG 102 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999997
No 3
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-41 Score=228.07 Aligned_cols=87 Identities=46% Similarity=0.847 Sum_probs=84.6
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEE
Q 033477 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKA 111 (118)
Q Consensus 32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~ 111 (118)
..+++|+.+|||++||++|+++|.+|+++|++++|||++||++||++|||+||||||++|||++||++++||||++++++
T Consensus 11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~a 90 (97)
T 4ds1_A 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLA 90 (97)
T ss_dssp -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEE
T ss_pred CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeC
Q 033477 112 VLLFKSG 118 (118)
Q Consensus 112 ~LlfKtg 118 (118)
|||||||
T Consensus 91 iLlfKtg 97 (97)
T 4ds1_A 91 FLVFKTA 97 (97)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999997
No 4
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=62.60 E-value=16 Score=19.61 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 033477 43 KEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (118)
Q Consensus 43 ~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~ 77 (118)
|...-+.+.-....-.+++ +.+||.+||+..|+
T Consensus 4 pkkiweticpt~~~~akkc--~g~iat~ik~~c~k 36 (37)
T 1eci_A 4 PKKIWETVCPTVEPWAKKC--SGDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHHHHHTB--CHHHHHHHHHHHHC
T ss_pred hHHHHHHhCcchHHHHHHc--cchHHHHHHHHhcc
Confidence 3334444444444445555 57899999999876
No 5
>2lc2_A AVR3A4; four helix bundle, RXLR effector, plant immunity, protein BI; NMR {Phytophthora capsici}
Probab=51.49 E-value=41 Score=22.51 Aligned_cols=67 Identities=13% Similarity=0.029 Sum_probs=37.2
Q ss_pred chhhhhhccccccccCCCCCCCcccccCCCCCceEEeeCCCC----HHHHHHHHHHHHHHHhcCCc--------------
Q 033477 2 SEETKKSVTGALVVKPNSDDRKPTVAVSQSGKRIIIKSADMK----EDLQKEAVDIAIAAFEKNSV-------------- 63 (118)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~I~~sdM~----~emq~~~i~~a~~al~~~~~-------------- 63 (118)
|.+||+|..|.+.|.-....|-+ ....-+|. .-.+.++..+|..+|.....
T Consensus 11 sdqtkism~~s~~n~d~~g~RfL-----------R~~eE~~~~~~~l~~ka~vK~lAKk~L~npkka~~~Y~~W~~kGyT 79 (108)
T 2lc2_A 11 SNQNKASMLQARLNDEAGGTRLL-----------RVHHESDTEERGFLEKAAVKKMAKAIMADPNKADEVYKKWADKGYT 79 (108)
T ss_dssp CCCCCCCTTCCCCSCCCCCCCCC-----------CCCSCCCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHTCC
T ss_pred chHHHHHHHhcccccchhhhHHH-----------HHhhcchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Confidence 56889998885543333222211 11122222 22456677888888887763
Q ss_pred hHHHHHHHHHHhcccC
Q 033477 64 EKDVAERIKKDFDKKH 79 (118)
Q Consensus 64 ekdiA~~IK~~lD~~y 79 (118)
.++|+.+||..=..+|
T Consensus 80 l~~Ian~Lk~~ek~kY 95 (108)
T 2lc2_A 80 LTQMSNFLKSKTAGKY 95 (108)
T ss_dssp HHHHHHHHHTTCSSSS
T ss_pred HHHHHHHHhhhhhhHH
Confidence 3467777776544444
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=48.66 E-value=18 Score=20.66 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcccC
Q 033477 44 EDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKH 79 (118)
Q Consensus 44 ~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~y 79 (118)
+.++++|++..+.-+++.+ ++|-+.|+..|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 3477888888888887764 678999999998763
No 7
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=47.98 E-value=16 Score=24.84 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCch--HHHHHHHHHHhcccCCCceE
Q 033477 41 DMKEDLQKEAVDIAIAAFEK--NSVE--KDVAERIKKDFDKKHGPTWH 84 (118)
Q Consensus 41 dM~~emq~~~i~~a~~al~~--~~~e--kdiA~~IK~~lD~~yG~~Wh 84 (118)
||-.|.+..+-=++.-+..+ .+.. +..|+.|...|-++|-+.|+
T Consensus 1 ~M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666555444444444444 3322 34688999999999999998
No 8
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=43.23 E-value=7.5 Score=20.64 Aligned_cols=14 Identities=50% Similarity=0.589 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhcc
Q 033477 64 EKDVAERIKKDFDK 77 (118)
Q Consensus 64 ekdiA~~IK~~lD~ 77 (118)
+.+||.+||+..|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 56899999998775
No 9
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=39.89 E-value=27 Score=26.74 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=34.3
Q ss_pred eeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhccc
Q 033477 38 KSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKK 78 (118)
Q Consensus 38 ~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~~ 78 (118)
.-.||+++..+.|...|...++.+..-+.+.+||+..|.+-
T Consensus 221 mG~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 221 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 261 (268)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999888876678999999999863
No 10
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=29.18 E-value=38 Score=25.29 Aligned_cols=13 Identities=46% Similarity=0.621 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcc
Q 033477 65 KDVAERIKKDFDK 77 (118)
Q Consensus 65 kdiA~~IK~~lD~ 77 (118)
|+||..||+-||.
T Consensus 125 KeIAsaIKklLDA 137 (213)
T 3ajm_A 125 KDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999995
No 11
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=28.32 E-value=90 Score=22.08 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcccCCC
Q 033477 50 AVDIAIAAFEKNSVEKDVAERIKKDFDKKHGP 81 (118)
Q Consensus 50 ~i~~a~~al~~~~~ekdiA~~IK~~lD~~yG~ 81 (118)
.++.+..-.++|++..+|-+.+|+.|.+.+++
T Consensus 85 ~tRqVa~YrkKYp~n~eIe~eyk~~l~qt~~~ 116 (154)
T 4fz4_A 85 YIRQVAELRKKYPGDNTIEEEYNAHLKQDEGK 116 (154)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHTCCCSSS
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHhhcccc
Confidence 44556666899999888888888888777664
No 12
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=27.44 E-value=28 Score=23.85 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCch--HHHHHHHHHHhcccCCCceE
Q 033477 41 DMKEDLQKEAVDIAIAAFEKNSVE--KDVAERIKKDFDKKHGPTWH 84 (118)
Q Consensus 41 dM~~emq~~~i~~a~~al~~~~~e--kdiA~~IK~~lD~~yG~~Wh 84 (118)
.|-.|.+..+-=++.-+..+.+.. +..++.|.+.|-++|-+.|.
T Consensus 7 ~M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 7 GMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp CSHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 465554444433333333333332 34688899999999999993
No 13
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=26.73 E-value=59 Score=24.70 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.1
Q ss_pred eCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 033477 39 SADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (118)
Q Consensus 39 ~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~ 77 (118)
..|++++..+.+.+.|..+++....-+++.+||+..|..
T Consensus 89 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~ 127 (255)
T 3icx_A 89 GADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKE 127 (255)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999999999887776667888999888753
No 14
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.69 E-value=28 Score=23.16 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=23.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcccC-CCceEEEEeC
Q 033477 54 AIAAFEKNSVEKDVAERIKKDFDKKH-GPTWHCIVGS 89 (118)
Q Consensus 54 a~~al~~~~~ekdiA~~IK~~lD~~y-G~~WhcIVGk 89 (118)
|+.||..++ .|++..|..-|+..- .+.|.++.+|
T Consensus 57 Ar~AL~~~n--gDl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 57 CVIALHDCN--GDVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHT--SCHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHcC--CCHHHHHHHHHhCCCcCCceeeeccc
Confidence 666776664 456777777777663 4689998877
No 15
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=25.38 E-value=1.5e+02 Score=23.95 Aligned_cols=45 Identities=9% Similarity=0.409 Sum_probs=32.4
Q ss_pred HHHHHHhcccCCCceEEEEeCCceeeEEecCCcEEEEEeCCEEEEEEee
Q 033477 69 ERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 117 (118)
Q Consensus 69 ~~IK~~lD~~yG~~WhcIVGk~Fgs~vthe~~~~i~F~~~~~~~LlfKt 117 (118)
+....++++-|...|++|.-. +.+ -+++.++-+.+++..++|||.
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~---~el-p~~G~~~~~~i~~~~vvv~R~ 88 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHE---THI-PKIGDYLTTYMGEDPVIMVRQ 88 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEG---GGS-CSTTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEeEH---HHc-CCCCCeEEEEECCEEEEEEEC
Confidence 345577888899999988654 111 134667778899999999984
No 16
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=25.17 E-value=66 Score=24.41 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=33.0
Q ss_pred eCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 033477 39 SADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (118)
Q Consensus 39 ~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~ 77 (118)
..+++++..+.+.+.|..+++....-+++.+||+..|..
T Consensus 103 G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~ 141 (260)
T 2ozb_B 103 GQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSF 141 (260)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988776667788999888753
No 17
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=23.38 E-value=1.1e+02 Score=19.31 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=26.0
Q ss_pred CCceEEeeCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Q 033477 32 GKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDK 77 (118)
Q Consensus 32 ~~~i~I~~sdM~~emq~~~i~~a~~al~~~~~ekdiA~~IK~~lD~ 77 (118)
+..+.|...+ .+....+.++..+.+.. ...+....+...++.
T Consensus 19 ~~~~~ir~~~--~~D~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~ 60 (166)
T 4evy_A 19 FQGMNIKPAS--EASLKDWLELRNKLWSD--SEASHLQEMHQLLAE 60 (166)
T ss_dssp -CCEEEEECC--GGGHHHHHHHHHHHSCC--CHHHHHHHHHHHHTC
T ss_pred CCCcEEEECC--HHHHHHHHHHHHHHhcC--CchHHHHHHHHHhcC
Confidence 4566666654 44566677777666555 344456778887776
No 18
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=23.07 E-value=1.8e+02 Score=21.99 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=35.2
Q ss_pred eeCCCCHHHHHHHHHHHHHH-Hhc---CC----------chHHHHHHHHHHhcccCCCceEEEE
Q 033477 38 KSADMKEDLQKEAVDIAIAA-FEK---NS----------VEKDVAERIKKDFDKKHGPTWHCIV 87 (118)
Q Consensus 38 ~~sdM~~emq~~~i~~a~~a-l~~---~~----------~ekdiA~~IK~~lD~~yG~~WhcIV 87 (118)
=..+||++....+|+.+.+. +.- .. +-.++.+.++..||. +.|.|||
T Consensus 107 G~i~l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~Vii 167 (251)
T 1qwg_A 107 GSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVII 167 (251)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEE
Confidence 45689999999999999877 221 11 124678899999997 6888887
No 19
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=21.84 E-value=1.4e+02 Score=19.59 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCc----hHHHHH
Q 033477 41 DMKEDLQKEAVDIAIAAFEKNSV----EKDVAE 69 (118)
Q Consensus 41 dM~~emq~~~i~~a~~al~~~~~----ekdiA~ 69 (118)
.|+++.++.|++.|.+.+.+.+. -++||+
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~ 40 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVK 40 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHCCcccccHHHHHH
Confidence 57889999999999999998764 245654
No 20
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.95 E-value=23 Score=23.76 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHhcccCCCceEE
Q 033477 43 KEDLQKEAVDIAIAAFEKNSVE---------------KDVAERIKKDFDKKHGPTWHC 85 (118)
Q Consensus 43 ~~emq~~~i~~a~~al~~~~~e---------------kdiA~~IK~~lD~~yG~~Whc 85 (118)
++.....++++.+.+|.++..+ ..-..+|-.-.-..-+|.|||
T Consensus 6 s~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r~dg~PiWsr 63 (111)
T 3k6g_A 6 SQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSR 63 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCH
T ss_pred CCCcccHHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCcCCCCcceee
Confidence 3344455677777777777631 122234444333456689986
No 21
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=20.81 E-value=34 Score=24.60 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=12.9
Q ss_pred cCCCceEEEEeCCceee
Q 033477 78 KHGPTWHCIVGSNFGSY 94 (118)
Q Consensus 78 ~yG~~WhcIVGk~Fgs~ 94 (118)
+|-+.+-+|.|+|||+=
T Consensus 50 ~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 50 KVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HCCTTCEEEECTTBTBS
T ss_pred hcCCCCEEEeCCCccCC
Confidence 45566889999999863
No 22
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=73 Score=22.52 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=32.1
Q ss_pred eCCCCHHHHHHHHHHHHHHHhcCCc----------------hHHHHHHHHHHhcccCCC
Q 033477 39 SADMKEDLQKEAVDIAIAAFEKNSV----------------EKDVAERIKKDFDKKHGP 81 (118)
Q Consensus 39 ~sdM~~emq~~~i~~a~~al~~~~~----------------ekdiA~~IK~~lD~~yG~ 81 (118)
.+.++-++.+.+ ++.++|+++++. .-|.++.+|+.+|+.|++
T Consensus 71 ~a~~e~e~~~N~-k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 71 QAKLEHEYIHNF-KVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp TCCSSHHHHHHH-HHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCChHHHHHHH-HHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 667777766664 667788888763 237899999999999975
Done!