Query 033478
Match_columns 118
No_of_seqs 104 out of 135
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qxf_A GR2, 30S ribosomal prot 94.0 0.034 1.2E-06 37.2 2.7 39 50-89 7-45 (66)
2 3j20_W 30S ribosomal protein S 93.5 0.046 1.6E-06 36.2 2.6 38 50-88 15-52 (63)
3 2xzm_6 RPS27E; ribosome, trans 92.9 0.065 2.2E-06 37.0 2.8 40 50-90 32-71 (81)
4 3u5c_b RP61, YS20, 40S ribosom 91.2 0.072 2.5E-06 36.9 1.3 41 50-91 34-74 (82)
5 3iz6_X 40S ribosomal protein S 89.0 0.095 3.2E-06 36.6 0.5 49 41-90 26-75 (86)
6 1gh9_A 8.3 kDa protein (gene M 87.5 0.72 2.4E-05 30.6 4.0 34 68-103 2-35 (71)
7 2ppt_A Thioredoxin-2; thiredox 80.8 0.4 1.4E-05 33.0 0.5 31 50-80 14-44 (155)
8 3p2a_A Thioredoxin 2, putative 76.8 0.76 2.6E-05 30.4 0.9 32 50-81 5-36 (148)
9 1bor_A Transcription factor PM 72.8 1.4 4.8E-05 26.0 1.3 31 68-105 24-54 (56)
10 1pft_A TFIIB, PFTFIIBN; N-term 72.2 2 6.8E-05 25.4 1.9 28 71-98 6-34 (50)
11 2yrc_A Protein transport prote 70.4 2.7 9.2E-05 26.6 2.3 35 69-103 8-48 (59)
12 2yrc_A Protein transport prote 67.6 3.4 0.00011 26.2 2.3 39 26-64 3-47 (59)
13 1wii_A Hypothetical UPF0222 pr 65.7 7.4 0.00025 26.4 3.9 39 49-87 22-64 (85)
14 1pft_A TFIIB, PFTFIIBN; N-term 65.7 4.5 0.00015 23.8 2.5 30 31-60 4-34 (50)
15 2ct7_A Ring finger protein 31; 62.3 5.4 0.00019 25.9 2.6 23 35-57 28-50 (86)
16 1qxf_A GR2, 30S ribosomal prot 58.9 7 0.00024 25.9 2.7 31 33-63 8-39 (66)
17 1vq8_Z 50S ribosomal protein L 55.0 6 0.0002 26.6 1.9 33 66-98 23-55 (83)
18 2xzm_6 RPS27E; ribosome, trans 54.2 18 0.00062 24.7 4.2 35 65-99 27-62 (81)
19 3j20_Y 30S ribosomal protein S 53.6 8.8 0.0003 23.4 2.3 27 71-97 20-46 (50)
20 3j20_W 30S ribosomal protein S 51.1 12 0.00039 24.6 2.7 39 26-64 9-48 (63)
21 2js4_A UPF0434 protein BB2007; 49.9 13 0.00044 24.2 2.8 31 71-101 9-39 (70)
22 1twf_I B12.6, DNA-directed RNA 48.8 9.2 0.00031 26.7 2.1 31 71-101 5-39 (122)
23 3na7_A HP0958; flagellar bioge 48.6 4.6 0.00016 30.8 0.5 18 70-87 222-239 (256)
24 2jr6_A UPF0434 protein NMA0874 48.6 12 0.00041 24.2 2.5 31 71-101 9-39 (68)
25 2hf1_A Tetraacyldisaccharide-1 48.0 17 0.00057 23.5 3.1 33 70-102 8-40 (68)
26 2pk7_A Uncharacterized protein 47.5 10 0.00035 24.6 2.0 30 72-101 10-39 (69)
27 2ct7_A Ring finger protein 31; 47.3 17 0.0006 23.4 3.1 25 73-97 28-52 (86)
28 2jrp_A Putative cytoplasmic pr 44.3 39 0.0013 22.8 4.6 58 33-99 3-62 (81)
29 2k2d_A Ring finger and CHY zin 41.8 42 0.0014 22.1 4.4 34 66-99 33-66 (79)
30 1gh9_A 8.3 kDa protein (gene M 41.7 18 0.00061 23.7 2.5 29 32-62 4-32 (71)
31 3p8b_A DNA-directed RNA polyme 40.7 14 0.0005 25.1 2.0 33 24-62 15-47 (81)
32 1pcx_A Protein transport prote 39.4 17 0.00059 32.5 2.8 21 82-102 128-148 (810)
33 2jne_A Hypothetical protein YF 39.3 48 0.0017 23.5 4.6 64 25-98 26-91 (101)
34 2jny_A Uncharacterized BCR; st 39.0 21 0.00072 23.0 2.5 30 72-101 12-41 (67)
35 3m7n_A Putative uncharacterize 38.6 17 0.00058 26.5 2.3 40 58-99 126-167 (179)
36 1zbd_B Rabphilin-3A; G protein 37.0 12 0.00042 26.7 1.2 56 30-98 53-108 (134)
37 3u5c_b RP61, YS20, 40S ribosom 36.9 17 0.00058 24.9 1.9 39 26-64 28-67 (82)
38 3h0g_I DNA-directed RNA polyme 36.2 24 0.00084 24.1 2.6 30 72-101 6-39 (113)
39 1faq_A RAF-1; transferase, ser 35.8 27 0.00093 20.0 2.5 23 71-98 15-37 (52)
40 3efo_B SEC24 related gene fami 35.2 16 0.00056 32.5 2.0 34 70-103 98-135 (770)
41 1m2v_B SEC24, protein transpor 34.9 22 0.00075 32.6 2.8 21 82-102 244-264 (926)
42 3eh2_A Protein transport prote 34.9 18 0.00063 32.1 2.3 34 70-103 94-131 (766)
43 3h0g_L DNA-directed RNA polyme 34.8 10 0.00036 24.6 0.5 28 69-97 20-47 (63)
44 1rfh_A RAS association (ralgds 31.9 36 0.0012 20.6 2.7 23 71-97 23-45 (59)
45 2pk7_A Uncharacterized protein 31.3 24 0.00083 22.8 1.8 32 31-62 7-38 (69)
46 2ct5_A Zinc finger BED domain 31.3 18 0.00062 23.6 1.2 29 18-47 9-43 (73)
47 1x0t_A Ribonuclease P protein 31.1 45 0.0015 23.2 3.3 51 28-87 61-111 (120)
48 2hf1_A Tetraacyldisaccharide-1 30.8 26 0.00089 22.6 1.9 32 31-62 7-38 (68)
49 2k1p_A Zinc finger RAN-binding 30.7 19 0.00066 20.0 1.1 23 51-79 7-29 (33)
50 2k4x_A 30S ribosomal protein S 30.6 24 0.00083 21.8 1.7 24 73-96 21-44 (55)
51 2jr6_A UPF0434 protein NMA0874 30.5 27 0.00093 22.5 2.0 32 31-62 7-38 (68)
52 3m7n_A Putative uncharacterize 30.2 38 0.0013 24.6 3.0 41 17-61 125-167 (179)
53 3eh1_A Protein transport prote 29.6 27 0.00092 31.1 2.4 32 71-103 86-121 (751)
54 2lk0_A RNA-binding protein 5; 29.5 21 0.00072 19.7 1.1 23 51-79 6-28 (32)
55 2js4_A UPF0434 protein BB2007; 29.2 31 0.0011 22.3 2.1 32 31-62 7-38 (70)
56 1twf_L ABC10-alpha, DNA-direct 27.4 21 0.00071 23.2 1.0 25 71-96 29-53 (70)
57 1pcx_A Protein transport prote 26.1 36 0.0012 30.4 2.6 33 32-64 112-148 (810)
58 2avu_E Flagellar transcription 25.6 61 0.0021 24.9 3.5 35 65-99 129-165 (192)
59 3qt1_I DNA-directed RNA polyme 24.6 23 0.0008 25.3 0.9 38 65-102 18-60 (133)
60 1tot_A CREB-binding protein; z 23.6 39 0.0013 20.4 1.7 24 69-97 5-28 (52)
61 2k3r_A Ribonuclease P protein 23.5 83 0.0028 22.0 3.6 50 28-86 56-105 (123)
62 1pzw_A Transcription factor gr 23.3 13 0.00043 22.7 -0.6 23 19-42 37-59 (80)
63 3iz6_X 40S ribosomal protein S 22.7 76 0.0026 21.8 3.2 36 29-64 33-69 (86)
64 1m2v_B SEC24, protein transpor 22.7 46 0.0016 30.5 2.7 33 32-64 228-264 (926)
65 1ptq_A Protein kinase C delta 22.7 54 0.0018 18.5 2.1 26 33-59 12-37 (50)
66 1vk6_A NADH pyrophosphatase; 1 22.4 50 0.0017 25.4 2.5 29 71-99 108-136 (269)
67 1dl6_A Transcription factor II 21.9 40 0.0014 20.7 1.5 26 72-97 13-39 (58)
68 2apo_B Ribosome biogenesis pro 21.9 43 0.0015 21.4 1.7 25 71-101 7-31 (60)
69 3vhs_A ATPase wrnip1; zinc fin 21.3 12 0.0004 21.3 -1.0 11 89-99 7-17 (29)
70 2fnf_X Putative RAS effector N 20.5 53 0.0018 20.8 1.9 23 71-97 36-58 (72)
71 3k7a_M Transcription initiatio 20.5 27 0.00093 27.6 0.6 13 68-80 40-52 (345)
72 3efo_B SEC24 related gene fami 20.4 40 0.0014 30.0 1.8 34 31-64 97-134 (770)
73 2ctt_A DNAJ homolog subfamily 20.2 1.8E+02 0.0062 18.8 4.6 84 13-101 9-94 (104)
74 1v98_A Thioredoxin; oxidoreduc 20.1 22 0.00075 22.9 0.0 30 51-80 3-32 (140)
No 1
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=93.98 E-value=0.034 Score=37.16 Aligned_cols=39 Identities=28% Similarity=0.601 Sum_probs=31.9
Q ss_pred eEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCCeE
Q 033478 50 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSV 89 (118)
Q Consensus 50 sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~SV 89 (118)
.|+|+.|..++.+=+ +....+.|.+|++.|.-|.|-..-
T Consensus 7 ~VKCp~C~niq~VFS-hA~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFD-HPSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEES-SCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEEe-cCceEEEcccCCCEEeecCCccee
Confidence 589999999988753 446679999999999999987653
No 2
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.50 E-value=0.046 Score=36.22 Aligned_cols=38 Identities=32% Similarity=0.686 Sum_probs=30.7
Q ss_pred eEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCCe
Q 033478 50 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPS 88 (118)
Q Consensus 50 sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~S 88 (118)
.|+|+.|..++.+= ++....+.|.+|++.|.-|.|-..
T Consensus 15 ~VkCp~C~~~q~VF-Sha~t~V~C~~Cgt~L~~PTGGKa 52 (63)
T 3j20_W 15 RVKCIDCGNEQIVF-SHPATKVRCLICGATLVEPTGGKG 52 (63)
T ss_dssp EEECSSSCCEEEEE-SSCSSCEECSSSCCEEEECCSSSC
T ss_pred EEECCCCCCeeEEE-ecCCeEEEccCcCCEEecCCCCcE
Confidence 58999999888874 355667899999999999988654
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=92.91 E-value=0.065 Score=37.00 Aligned_cols=40 Identities=25% Similarity=0.658 Sum_probs=31.9
Q ss_pred eEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCCeEE
Q 033478 50 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVR 90 (118)
Q Consensus 50 sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~SVr 90 (118)
.|+|+.|..++.+=+ +....|.|.+|++.|.-|.|-..--
T Consensus 32 ~VkCp~C~n~q~VFS-hA~t~V~C~~Cg~~L~~PTGGKA~l 71 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFS-NAQSTIICEKCSAILCKPTGGKVQI 71 (81)
T ss_dssp EEECSSSCCEEEEET-TCSSCEECSSSCCEEEEECSSCEEE
T ss_pred EeECCCCCCeeEEEe-cCccEEEccCCCCEEeecCCCCeEe
Confidence 589999999888753 4566789999999999999876543
No 4
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=91.17 E-value=0.072 Score=36.89 Aligned_cols=41 Identities=32% Similarity=0.663 Sum_probs=32.1
Q ss_pred eEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCCeEEC
Q 033478 50 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVRC 91 (118)
Q Consensus 50 sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~SVrC 91 (118)
.|+|+.|..++.+= ++....|.|.+|++.|.-|.|-..--=
T Consensus 34 ~VkCp~C~~~q~VF-Sha~t~V~C~~Cg~~L~~PTGGKa~l~ 74 (82)
T 3u5c_b 34 DVKCPGCLNITTVF-SHAQTAVTCESCSTILCTPTGGKAKLS 74 (82)
T ss_dssp EEECTTSCSCEEEE-SBCSSCCCCSSSCCCCEECCSSBCEEC
T ss_pred EEECCCCCCeeEEE-ecCCeEEEccccCCEEeccCCCCeEec
Confidence 58999999988875 344667889999999999998765443
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.96 E-value=0.095 Score=36.57 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=32.0
Q ss_pred eeeecCCC-CeEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCCeEE
Q 033478 41 LLAYPRGA-RHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVR 90 (118)
Q Consensus 41 lL~YprGA-~sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~SVr 90 (118)
|..=|++- -.|+|+.|..++.+= ++....|.|.+|++.|.-|.|-..--
T Consensus 26 Lv~~PnS~Fm~VkCp~C~~~~~VF-ShA~t~V~C~~CgtvL~~PTGGKa~l 75 (86)
T 3iz6_X 26 LVQSPNSFFMDVKCQGCFNITTVF-SHSQTVVVCPGCQTVLCQPTGGKARL 75 (86)
T ss_dssp -------CEEEEECTTTCCEEEEE-TTCSSCCCCSSSCCCCSCCCSSSCCC
T ss_pred eccCCCCcEeEEECCCCCCeeEEE-ecCCcEEEccCCCCEeecCCCCCEEe
Confidence 33334443 348999999988775 34466688999999999998876543
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=87.52 E-value=0.72 Score=30.57 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.1
Q ss_pred eeEEEcCCCCeeeEeeCCCCeEECCCCCccceeccC
Q 033478 68 VGQVKCASCAVLLMYPYGAPSVRCSSCCFVTEIGVC 103 (118)
Q Consensus 68 ~a~v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~~~ 103 (118)
+.-+.|. |+..+..-.|+.+.+|+ |....++...
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCSS
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceE
Confidence 3457899 99999999999999998 9998887643
No 7
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=80.82 E-value=0.4 Score=32.98 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=23.0
Q ss_pred eEEcCCCCccccccccceeeEEEcCCCCeee
Q 033478 50 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLL 80 (118)
Q Consensus 50 sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~L 80 (118)
++.|+.|.++|.+|+......-.||.|+..|
T Consensus 14 ~~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPSDRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEGGGTTSCCBCTTTCCBS
T ss_pred eEECccccccccCCcccccCCCCCCcCCccc
Confidence 5888888888888765444556788888776
No 8
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=76.80 E-value=0.76 Score=30.40 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=24.8
Q ss_pred eEEcCCCCccccccccceeeEEEcCCCCeeeE
Q 033478 50 HVKCSCCQTVNFVLEAHQVGQVKCASCAVLLM 81 (118)
Q Consensus 50 sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~Lm 81 (118)
.+.|+.|.+.|.+|+........|+.|+..+.
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~ 36 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLF 36 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTT
T ss_pred EEECcccccccCCCCcccccCCcchhcCCccc
Confidence 57799999999888766666677888888653
No 9
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.77 E-value=1.4 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=19.9
Q ss_pred eeEEEcCCCCeeeEeeCCCCeEECCCCCccceeccCCc
Q 033478 68 VGQVKCASCAVLLMYPYGAPSVRCSSCCFVTEIGVCGL 105 (118)
Q Consensus 68 ~a~v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~~~n~ 105 (118)
=+|..|..|-.. ...+|+.|+....++...+
T Consensus 24 CgH~fC~~Ci~~-------~~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 24 CLHTLCSGCLEA-------SGMQCPICQAPWPLGADTP 54 (56)
T ss_dssp TSCCSBTTTCSS-------SSSSCSSCCSSSSCCSSCC
T ss_pred CCCcccHHHHcc-------CCCCCCcCCcEeecCCcCc
Confidence 344556667544 4668888888777765543
No 10
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.19 E-value=2 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEcCCCCe-eeEeeCCCCeEECCCCCccc
Q 033478 71 VKCASCAV-LLMYPYGAPSVRCSSCCFVT 98 (118)
Q Consensus 71 v~Cg~Crt-~LmyP~GA~SVrCs~C~tVT 98 (118)
+.|..|+. .|.|-+.+....|..|..|-
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 45777776 77777777777888777753
No 11
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=70.38 E-value=2.7 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=21.6
Q ss_pred eEEEcCC--CCeee----EeeCCCCeEECCCCCccceeccC
Q 033478 69 GQVKCAS--CAVLL----MYPYGAPSVRCSSCCFVTEIGVC 103 (118)
Q Consensus 69 a~v~Cg~--Crt~L----myP~GA~SVrCs~C~tVT~V~~~ 103 (118)
.-++|.+ ||+.| .+-.|...-+|..|...|.++++
T Consensus 8 ~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSC
T ss_pred CCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHH
Confidence 3345554 55543 23456677788888888877754
No 12
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=67.56 E-value=3.4 Score=26.19 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=31.9
Q ss_pred Cccccceeeecc--cccee----eecCCCCeEEcCCCCccccccc
Q 033478 26 YHQEMAQMVCGS--CRRLL----AYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 26 ~~~~~sQLvCgg--Cr~lL----~YprGA~sVrC~~C~tVn~v~~ 64 (118)
.|.+..-+.|.. ||..| .+-.|...-+|..|...|.+|+
T Consensus 3 ~~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 3 SGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CSSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred ccCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 366778889987 99876 4556788999999999999985
No 13
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=65.71 E-value=7.4 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=29.8
Q ss_pred CeEEcCCCCccccccc----cceeeEEEcCCCCeeeEeeCCCC
Q 033478 49 RHVKCSCCQTVNFVLE----AHQVGQVKCASCAVLLMYPYGAP 87 (118)
Q Consensus 49 ~sVrC~~C~tVn~v~~----a~q~a~v~Cg~Crt~LmyP~GA~ 87 (118)
+.-.|+.|+..+++.- ....+.+.|+.|+..-.++.++.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L 64 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL 64 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSS
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCcc
Confidence 4457999999987652 45689999999998877776654
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=65.68 E-value=4.5 Score=23.79 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=20.6
Q ss_pred ceeeeccccc-eeeecCCCCeEEcCCCCccc
Q 033478 31 AQMVCGSCRR-LLAYPRGARHVKCSCCQTVN 60 (118)
Q Consensus 31 sQLvCggCr~-lL~YprGA~sVrC~~C~tVn 60 (118)
..++|..|.. -|.|-..+....|..|..|-
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4566777766 67777777777777776654
No 15
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=62.27 E-value=5.4 Score=25.93 Aligned_cols=23 Identities=26% Similarity=0.706 Sum_probs=10.1
Q ss_pred eccccceeeecCCCCeEEcCCCC
Q 033478 35 CGSCRRLLAYPRGARHVKCSCCQ 57 (118)
Q Consensus 35 CggCr~lL~YprGA~sVrC~~C~ 57 (118)
|.+|..++....+...|.|+.|+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~ 50 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCH 50 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTC
T ss_pred CcCCCchheecCCCCceEeCCCC
Confidence 44444444444444444444443
No 16
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=58.91 E-value=7 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=19.6
Q ss_pred eeeccccce-eeecCCCCeEEcCCCCcccccc
Q 033478 33 MVCGSCRRL-LAYPRGARHVKCSCCQTVNFVL 63 (118)
Q Consensus 33 LvCggCr~l-L~YprGA~sVrC~~C~tVn~v~ 63 (118)
..|.||..+ ..|..-++-|.|..|+++=.-|
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 445566443 5577777777777777766554
No 17
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=55.00 E-value=6 Score=26.62 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=28.1
Q ss_pred ceeeEEEcCCCCeeeEeeCCCCeEECCCCCccc
Q 033478 66 HQVGQVKCASCAVLLMYPYGAPSVRCSSCCFVT 98 (118)
Q Consensus 66 ~q~a~v~Cg~Crt~LmyP~GA~SVrCs~C~tVT 98 (118)
.|-..-.|..|+..+++.+++..-+|+-|..+-
T Consensus 23 ~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 23 EMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred hccccCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 345567899999999999999999999998863
No 18
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=54.15 E-value=18 Score=24.69 Aligned_cols=35 Identities=20% Similarity=0.581 Sum_probs=27.7
Q ss_pred cceeeEEEcCCCC-eeeEeeCCCCeEECCCCCccce
Q 033478 65 AHQVGQVKCASCA-VLLMYPYGAPSVRCSSCCFVTE 99 (118)
Q Consensus 65 a~q~a~v~Cg~Cr-t~LmyP~GA~SVrCs~C~tVT~ 99 (118)
..-...|.|.+|. ...++-.-+..|.|..|+++--
T Consensus 27 nS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 27 NSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp SCCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEE
T ss_pred CCcEEEeECCCCCCeeEEEecCccEEEccCCCCEEe
Confidence 3457788999995 5677888888899999998743
No 19
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.58 E-value=8.8 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.429 Sum_probs=18.4
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCcc
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tV 97 (118)
-.|..|+..++..+......|+.|+.+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCE
Confidence 347778775555555677788888764
No 20
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.07 E-value=12 Score=24.59 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=25.7
Q ss_pred Cccccceeeeccccce-eeecCCCCeEEcCCCCccccccc
Q 033478 26 YHQEMAQMVCGSCRRL-LAYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 26 ~~~~~sQLvCggCr~l-L~YprGA~sVrC~~C~tVn~v~~ 64 (118)
|...+-...|.+|..+ ..|.+-.+.|.|..|.++=.-|.
T Consensus 9 PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 9 PRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp CSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 3444455667777543 56777788888888888766553
No 21
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=49.85 E-value=13 Score=24.18 Aligned_cols=31 Identities=13% Similarity=0.343 Sum_probs=17.5
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCccceec
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFVTEIG 101 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~ 101 (118)
+.|..|+..|.|-.+.....|+.|+..-+|.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 4555555555555555555565565555554
No 22
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=48.81 E-value=9.2 Score=26.65 Aligned_cols=31 Identities=26% Similarity=0.571 Sum_probs=20.4
Q ss_pred EEcCCCCeeeEeeC----CCCeEECCCCCccceec
Q 033478 71 VKCASCAVLLMYPY----GAPSVRCSSCCFVTEIG 101 (118)
Q Consensus 71 v~Cg~Crt~LmyP~----GA~SVrCs~C~tVT~V~ 101 (118)
.-|..|+.+|..+. +...+.|..|.+...+.
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 45777777776663 34567788887766544
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.63 E-value=4.6 Score=30.83 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=12.4
Q ss_pred EEEcCCCCeeeEeeCCCC
Q 033478 70 QVKCASCAVLLMYPYGAP 87 (118)
Q Consensus 70 ~v~Cg~Crt~LmyP~GA~ 87 (118)
-+.|.+|+..|.++....
T Consensus 222 Iv~Cp~CgRIL~~~~~~~ 239 (256)
T 3na7_A 222 MITCPYCGRILYAEGAYE 239 (256)
T ss_dssp CEECTTTCCEEECSCC--
T ss_pred EEECCCCCeeEEeCcchh
Confidence 378888888888876543
No 24
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=48.59 E-value=12 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=16.6
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCccceec
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFVTEIG 101 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~ 101 (118)
+.|..|+..|.|-.+.....|+.|+..-+|.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 4455555555555555555555555555544
No 25
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=48.00 E-value=17 Score=23.49 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=20.9
Q ss_pred EEEcCCCCeeeEeeCCCCeEECCCCCccceecc
Q 033478 70 QVKCASCAVLLMYPYGAPSVRCSSCCFVTEIGV 102 (118)
Q Consensus 70 ~v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~~ 102 (118)
-+.|..|+..|.|-.+.....|+.|+..-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 355666666666666666666666666666553
No 26
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.49 E-value=10 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=13.9
Q ss_pred EcCCCCeeeEeeCCCCeEECCCCCccceec
Q 033478 72 KCASCAVLLMYPYGAPSVRCSSCCFVTEIG 101 (118)
Q Consensus 72 ~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~ 101 (118)
.|..|+..|.|-.+.....|+.|+..-+|.
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 444444444444444444444444444443
No 27
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=47.28 E-value=17 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=12.1
Q ss_pred cCCCCeeeEeeCCCCeEECCCCCcc
Q 033478 73 CASCAVLLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 73 Cg~Crt~LmyP~GA~SVrCs~C~tV 97 (118)
|.+|...++..++...|.|+.|++.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~ 52 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQT 52 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCE
T ss_pred CcCCCchheecCCCCceEeCCCCCc
Confidence 3444444444444445556555544
No 28
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.28 E-value=39 Score=22.83 Aligned_cols=58 Identities=21% Similarity=0.458 Sum_probs=42.5
Q ss_pred eeeccccceeeecCCCCeEEcCCCCccccccccceeeEEEcCCCCeee--EeeCCCCeEECCCCCccce
Q 033478 33 MVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLL--MYPYGAPSVRCSSCCFVTE 99 (118)
Q Consensus 33 LvCggCr~lL~YprGA~sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~L--myP~GA~SVrCs~C~tVT~ 99 (118)
+.|..|+..|.- .+..-.|..|+.- .. .. -.|..|+..| .=.=||.+.-|..|+..-+
T Consensus 3 ~~CP~C~~~l~~--~~~~~~C~~C~~~-~~----~~--afCPeCgq~Le~lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKD-FS----LQ--ALCPDCRQPLQVLKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCE-EE----EE--EECSSSCSCCCEEEETTEEEECCTTTTCCCC
T ss_pred CCCCCCCCcccc--CCCceECcccccc-CC----Cc--ccCcchhhHHHHHHhcCCcCeeeccCCCEee
Confidence 678889888874 3447789999872 21 12 3899999988 4455888999999997654
No 29
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=41.79 E-value=42 Score=22.07 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=20.4
Q ss_pred ceeeEEEcCCCCeeeEeeCCCCeEECCCCCccce
Q 033478 66 HQVGQVKCASCAVLLMYPYGAPSVRCSSCCFVTE 99 (118)
Q Consensus 66 ~q~a~v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~ 99 (118)
.++..+.|..|+..-..+..---.+|+.|+..|.
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 3445566666666666666555556666666544
No 30
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=41.68 E-value=18 Score=23.72 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=21.3
Q ss_pred eeeeccccceeeecCCCCeEEcCCCCccccc
Q 033478 32 QMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 62 (118)
Q Consensus 32 QLvCggCr~lL~YprGA~sVrC~~C~tVn~v 62 (118)
-+.|. |...+.=..|+...+|+ |...-.+
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 46787 88887777788888887 7766544
No 31
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=40.74 E-value=14 Score=25.14 Aligned_cols=33 Identities=15% Similarity=0.483 Sum_probs=18.9
Q ss_pred ccCccccceeeeccccceeeecCCCCeEEcCCCCccccc
Q 033478 24 TCYHQEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 62 (118)
Q Consensus 24 ~~~~~~~sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v 62 (118)
-|-|..|....|-.|+.++.+- .|+.|..-+..
T Consensus 15 ~~~~~~m~~rAC~~C~~v~~~d------~CPnCgs~~~T 47 (81)
T 3p8b_A 15 VPRGSHMSEKACRHCHYITSED------RCPVCGSRDLS 47 (81)
T ss_dssp -------CCEEETTTCBEESSS------SCTTTCCCCEE
T ss_pred ccCCcchhHHHHhhCCCccCCC------CCCCCCCCccC
Confidence 4557777888888888887553 48888775543
No 32
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=39.40 E-value=17 Score=32.45 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=17.2
Q ss_pred eeCCCCeEECCCCCccceecc
Q 033478 82 YPYGAPSVRCSSCCFVTEIGV 102 (118)
Q Consensus 82 yP~GA~SVrCs~C~tVT~V~~ 102 (118)
+-.|....+|..|...|.+++
T Consensus 128 ~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 128 FIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp EETTTTEEECTTTCCEEECCG
T ss_pred EeCCCCEEEccCCCCcCCCch
Confidence 345778999999999998875
No 33
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.33 E-value=48 Score=23.51 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=46.3
Q ss_pred cCccccceeeeccccceeeecCCCCeEEcCCCCccccccccceeeEEEcCCCCeeeEe--eCCCCeEECCCCCccc
Q 033478 25 CYHQEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMY--PYGAPSVRCSSCCFVT 98 (118)
Q Consensus 25 ~~~~~~sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~Lmy--P~GA~SVrCs~C~tVT 98 (118)
+-|+.|. +.|..|+..|.-. |- ...|..|+.-- ..+-.|..|+..|-. .=||-..-|..|+...
T Consensus 26 ~~~~~M~-~~CP~Cq~eL~~~-g~-~~hC~~C~~~f-------~~~a~CPdC~q~LevLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 26 PRGSHME-LHCPQCQHVLDQD-NG-HARCRSCGEFI-------EMKALCPDCHQPLQVLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp -----CC-CBCSSSCSBEEEE-TT-EEEETTTCCEE-------EEEEECTTTCSBCEEEEETTEEEEEETTTTEEE
T ss_pred cCccccc-ccCccCCCcceec-CC-EEECccccchh-------hccccCcchhhHHHHHHHhcCcchhhccCCcee
Confidence 3455566 9999999999854 43 56799998732 445789999999876 4588999999998754
No 34
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.97 E-value=21 Score=23.05 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=13.5
Q ss_pred EcCCCCeeeEeeCCCCeEECCCCCccceec
Q 033478 72 KCASCAVLLMYPYGAPSVRCSSCCFVTEIG 101 (118)
Q Consensus 72 ~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~ 101 (118)
.|..|+..|.|-.......|+.|+..-+|.
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred CCCCCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 444444444444444444444444444443
No 35
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=38.64 E-value=17 Score=26.48 Aligned_cols=40 Identities=18% Similarity=0.569 Sum_probs=27.8
Q ss_pred ccccccccceeeEEE--cCCCCeeeEeeCCCCeEECCCCCccce
Q 033478 58 TVNFVLEAHQVGQVK--CASCAVLLMYPYGAPSVRCSSCCFVTE 99 (118)
Q Consensus 58 tVn~v~~a~q~a~v~--Cg~Crt~LmyP~GA~SVrCs~C~tVT~ 99 (118)
.+.+.--+++.+.+. |..|+..| +|.+ ...+|+.|..+-.
T Consensus 126 ~i~LS~k~~~lGvv~a~~~~~g~~m-~~~~-~~~~cp~~g~~e~ 167 (179)
T 3m7n_A 126 NLRLSTKEEEMGVLRALCSNCKTEM-VREG-DILKCPECGRVEK 167 (179)
T ss_dssp TTEEECCSTTCEEEECBCTTTCCBC-EECS-SSEECSSSCCEEC
T ss_pred eEEEEEecCCCCEEEecccccCCce-EECC-CEEECCCCCCEEE
Confidence 344433345555554 77788765 8999 9999999987643
No 36
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=37.04 E-value=12 Score=26.74 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=42.7
Q ss_pred cceeeeccccceeeecCCCCeEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCCeEECCCCCccc
Q 033478 30 MAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAPSVRCSSCCFVT 98 (118)
Q Consensus 30 ~sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~SVrCs~C~tVT 98 (118)
.++-.|.-|...+- ..++..+.|..|+. -+|..|+...-+-+....-.|.+|+.-.
T Consensus 53 ~~~~~C~~C~~~~g-~l~~~g~~C~~C~~------------~VC~~C~~~~~~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 53 DGVNRCILCGEQLG-MLGSASVVCEDCKK------------NVCTKCGVETSNNRPHPVWLCKICLEQR 108 (134)
T ss_dssp CSSSBCSSSCCBCS-TTSCCEEECTTTCC------------EEETTSEEECCCSSSSCCEEEHHHHHHH
T ss_pred CCCccccccCCCcc-cccCCCCCCCCCCc------------ccccccCCccCCCCCccceechhhHHHH
Confidence 45677999998886 45667789999975 5799999887665667788888887543
No 37
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=36.94 E-value=17 Score=24.93 Aligned_cols=39 Identities=15% Similarity=0.424 Sum_probs=26.9
Q ss_pred Cccccceeeeccccce-eeecCCCCeEEcCCCCccccccc
Q 033478 26 YHQEMAQMVCGSCRRL-LAYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 26 ~~~~~sQLvCggCr~l-L~YprGA~sVrC~~C~tVn~v~~ 64 (118)
|..-+-...|.||..+ ..|..-.+-|.|..|+++=.-|.
T Consensus 28 PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PT 67 (82)
T 3u5c_b 28 PRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPT 67 (82)
T ss_dssp CCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECC
T ss_pred CCCcEEEEECCCCCCeeEEEecCCeEEEccccCCEEeccC
Confidence 3444555677777653 56788888888888888766554
No 38
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.20 E-value=24 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=19.6
Q ss_pred EcCCCCeeeEeeCCC----CeEECCCCCccceec
Q 033478 72 KCASCAVLLMYPYGA----PSVRCSSCCFVTEIG 101 (118)
Q Consensus 72 ~Cg~Crt~LmyP~GA----~SVrCs~C~tVT~V~ 101 (118)
-|..|+.+|....+. ....|..|.++-.+.
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 377777776555432 357788888776654
No 39
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=35.80 E-value=27 Score=20.04 Aligned_cols=23 Identities=26% Similarity=0.765 Sum_probs=17.0
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCccc
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFVT 98 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tVT 98 (118)
-.|..|+..|. +..+|..|...-
T Consensus 15 t~C~~C~~~l~-----qG~~C~~C~~~~ 37 (52)
T 1faq_A 15 AFCDICQKFLL-----NGFRCQTCGYKF 37 (52)
T ss_dssp EECTTSSSEEC-----SEEECTTTTCCB
T ss_pred cCCCCcccccc-----cCCEeCCCCCeE
Confidence 57888888775 678888887543
No 40
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=35.18 E-value=16 Score=32.48 Aligned_cols=34 Identities=21% Similarity=0.585 Sum_probs=24.5
Q ss_pred EEEcCCCCeee----EeeCCCCeEECCCCCccceeccC
Q 033478 70 QVKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGVC 103 (118)
Q Consensus 70 ~v~Cg~Crt~L----myP~GA~SVrCs~C~tVT~V~~~ 103 (118)
-++|..||+.| .+-.|.+..+|..|...|.+++.
T Consensus 98 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 98 PVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp SCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CCccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 36777777754 34456788899999999988743
No 41
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=34.90 E-value=22 Score=32.62 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=17.2
Q ss_pred eeCCCCeEECCCCCccceecc
Q 033478 82 YPYGAPSVRCSSCCFVTEIGV 102 (118)
Q Consensus 82 yP~GA~SVrCs~C~tVT~V~~ 102 (118)
+-.|....+|..|...|.++.
T Consensus 244 ~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 244 FIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp EETTTTEEECTTTCCEEECCG
T ss_pred EeCCCCEEEccCCCCCCCCch
Confidence 346788999999999998864
No 42
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=34.87 E-value=18 Score=32.12 Aligned_cols=34 Identities=15% Similarity=0.578 Sum_probs=24.7
Q ss_pred EEEcCCCCeee----EeeCCCCeEECCCCCccceeccC
Q 033478 70 QVKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGVC 103 (118)
Q Consensus 70 ~v~Cg~Crt~L----myP~GA~SVrCs~C~tVT~V~~~ 103 (118)
-++|..||+.| .+-.|.+..+|..|...|.+++.
T Consensus 94 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 94 PLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp CCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 36777777754 23447788999999999998754
No 43
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.79 E-value=10 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=14.9
Q ss_pred eEEEcCCCCeeeEeeCCCCeEECCCCCcc
Q 033478 69 GQVKCASCAVLLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 69 a~v~Cg~Crt~LmyP~GA~SVrCs~C~tV 97 (118)
..-.|+.|+...-.-.+ ..+||+-|.+=
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCcE
Confidence 33456666665554443 34666666543
No 44
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=31.90 E-value=36 Score=20.60 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=18.2
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCcc
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tV 97 (118)
..|..|+..| +.+..+|..|...
T Consensus 23 t~C~~C~~~i----~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 23 GWCDLCGREV----LRQALRCANCKFT 45 (59)
T ss_dssp EECTTTCSEE----CSCCEECTTTSCE
T ss_pred eEchhcchhh----hhCccEeCCCCCe
Confidence 5688898888 5777899988764
No 45
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=31.33 E-value=24 Score=22.77 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=20.9
Q ss_pred ceeeeccccceeeecCCCCeEEcCCCCccccc
Q 033478 31 AQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 62 (118)
Q Consensus 31 sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v 62 (118)
.-|+|--|+.-|.|-.+...-.|+.|...-++
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 45788888888888776555555555544443
No 46
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Probab=31.29 E-value=18 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=22.1
Q ss_pred eeeeecccCcccc------ceeeeccccceeeecCC
Q 033478 18 SFWLTLTCYHQEM------AQMVCGSCRRLLAYPRG 47 (118)
Q Consensus 18 ~~~~~~~~~~~~~------sQLvCggCr~lL~YprG 47 (118)
..|-+|+-+..+- ...+|-.|...|.| .|
T Consensus 9 ~VW~~F~k~~~~~g~il~~~~a~Ck~C~~~l~~-~g 43 (73)
T 2ct5_A 9 KVWKYFGFDTNAEGCILQWKKIYCRICMAQIAY-SG 43 (73)
T ss_dssp CTTSSSCCCCCSSSCGGGSSCCEETTTTEECCC-CS
T ss_pred hHHHhCCccccCCCccccCCEEECCCCCccccC-CC
Confidence 4688887665332 68999999999998 44
No 47
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=31.06 E-value=45 Score=23.18 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=31.0
Q ss_pred cccceeeeccccceeeecCCCCeEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCCC
Q 033478 28 QEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGAP 87 (118)
Q Consensus 28 ~~~sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA~ 87 (118)
++.-..+|..|.++|..-..++ |+ ........-.+.|..|+..--||.+..
T Consensus 61 ~~~KR~~Ck~C~s~LiPG~t~~-vr--------i~~~~~~~vv~tCl~Cg~~kR~p~~~~ 111 (120)
T 1x0t_A 61 RKWKRRYCKRCHTFLIPGVNAR-VR--------LRTKRMPHVVITCLECGYIMRYPYLRE 111 (120)
T ss_dssp TTTTTSBCTTTCCBCCBTTTEE-EE--------EECSSSCEEEEEETTTCCEEEEECC--
T ss_pred HHHHHHhccCCCCEeECCCceE-EE--------EecCCccEEEEECCCCCCEEEEccCcc
Confidence 4556779999999988754442 22 111111145567888888888887753
No 48
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.77 E-value=26 Score=22.56 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=21.1
Q ss_pred ceeeeccccceeeecCCCCeEEcCCCCccccc
Q 033478 31 AQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 62 (118)
Q Consensus 31 sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v 62 (118)
.-|+|.-|+.-|.|-.+...-.|+.|...-++
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 7 EILVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp EECBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 44678888888888776555566666554443
No 49
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.73 E-value=19 Score=20.03 Aligned_cols=23 Identities=26% Similarity=0.728 Sum_probs=15.6
Q ss_pred EEcCCCCccccccccceeeEEEcCCCCee
Q 033478 51 VKCSCCQTVNFVLEAHQVGQVKCASCAVL 79 (118)
Q Consensus 51 VrC~~C~tVn~v~~a~q~a~v~Cg~Crt~ 79 (118)
-.|+.|..+|.+.. ..|..|++.
T Consensus 7 W~C~~C~~~Nfa~R------~~C~~C~~p 29 (33)
T 2k1p_A 7 WQCKTCSNVNWARR------SECNMCNTP 29 (33)
T ss_dssp CBCSSSCCBCCTTC------SBCSSSCCB
T ss_pred cccCCCCCcccccc------ccccccCCc
Confidence 35788888888653 456667653
No 50
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.60 E-value=24 Score=21.78 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=9.7
Q ss_pred cCCCCeeeEeeCCCCeEECCCCCc
Q 033478 73 CASCAVLLMYPYGAPSVRCSSCCF 96 (118)
Q Consensus 73 Cg~Crt~LmyP~GA~SVrCs~C~t 96 (118)
|..|+..+++........|..|++
T Consensus 21 CPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 21 CPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp CTTTTTTCCCEECSSEEECTTTCC
T ss_pred CcCCCCceeEeccCCEEECCCCCC
Confidence 444443333333333444444443
No 51
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.48 E-value=27 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=20.8
Q ss_pred ceeeeccccceeeecCCCCeEEcCCCCccccc
Q 033478 31 AQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 62 (118)
Q Consensus 31 sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v 62 (118)
.-|+|--|+.-|.|-.+...-.|+.|...-++
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 44678888888888776555556555544443
No 52
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.15 E-value=38 Score=24.57 Aligned_cols=41 Identities=24% Similarity=0.594 Sum_probs=26.5
Q ss_pred eeeeeecccCcccccee--eeccccceeeecCCCCeEEcCCCCcccc
Q 033478 17 ESFWLTLTCYHQEMAQM--VCGSCRRLLAYPRGARHVKCSCCQTVNF 61 (118)
Q Consensus 17 ~~~~~~~~~~~~~~sQL--vCggCr~lL~YprGA~sVrC~~C~tVn~ 61 (118)
..+-|...- .+.+-+ .|..|...| +|.+ ...+|+.|..+-.
T Consensus 125 ~~i~LS~k~--~~lGvv~a~~~~~g~~m-~~~~-~~~~cp~~g~~e~ 167 (179)
T 3m7n_A 125 DNLRLSTKE--EEMGVLRALCSNCKTEM-VREG-DILKCPECGRVEK 167 (179)
T ss_dssp TTTEEECCS--TTCEEEECBCTTTCCBC-EECS-SSEECSSSCCEEC
T ss_pred CeEEEEEec--CCCCEEEecccccCCce-EECC-CEEECCCCCCEEE
Confidence 444454433 333333 455677655 8999 9999999988764
No 53
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=29.60 E-value=27 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.527 Sum_probs=22.0
Q ss_pred EEcCCCCeee----EeeCCCCeEECCCCCccceeccC
Q 033478 71 VKCASCAVLL----MYPYGAPSVRCSSCCFVTEIGVC 103 (118)
Q Consensus 71 v~Cg~Crt~L----myP~GA~SVrCs~C~tVT~V~~~ 103 (118)
++|..||+.| .+..| ...+|..|...|.+++.
T Consensus 86 ~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~~ 121 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEE 121 (751)
T ss_dssp CBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCGG
T ss_pred CcccCccCEeCCceEEecC-CEEEcccccCCCCCCHH
Confidence 5666666643 22344 88999999999988753
No 54
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.46 E-value=21 Score=19.73 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=16.0
Q ss_pred EEcCCCCccccccccceeeEEEcCCCCee
Q 033478 51 VKCSCCQTVNFVLEAHQVGQVKCASCAVL 79 (118)
Q Consensus 51 VrC~~C~tVn~v~~a~q~a~v~Cg~Crt~ 79 (118)
-.|+.|..+|.+.. ..|..|++.
T Consensus 6 W~C~~C~~~Nfa~r------~~C~~C~~p 28 (32)
T 2lk0_A 6 WLCNKCCLNNFRKR------LKCFRCGAD 28 (32)
T ss_dssp EECTTTCCEEETTC------CBCTTTCCB
T ss_pred CCcCcCcCCcChhc------ceecCCCCc
Confidence 45788888888653 567777653
No 55
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.24 E-value=31 Score=22.32 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=21.4
Q ss_pred ceeeeccccceeeecCCCCeEEcCCCCccccc
Q 033478 31 AQMVCGSCRRLLAYPRGARHVKCSCCQTVNFV 62 (118)
Q Consensus 31 sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v 62 (118)
.-|+|.-|+.-|.|-.+...-.|+.|...-++
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 45788888888888776555566666554443
No 56
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.45 E-value=21 Score=23.25 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=14.6
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCc
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCF 96 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~t 96 (118)
-.|+.|+...-.- ....|+|+-|.+
T Consensus 29 Y~C~~CG~~~e~~-~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLS-RTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCC-TTSTTCCSSSCC
T ss_pred EECCCCCCcceeC-CCCCccCCCCCc
Confidence 4577777663322 234567777776
No 57
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=26.10 E-value=36 Score=30.39 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=27.7
Q ss_pred eeeecccccee----eecCCCCeEEcCCCCccccccc
Q 033478 32 QMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 32 QLvCggCr~lL----~YprGA~sVrC~~C~tVn~v~~ 64 (118)
-+.|..||..| .+-.|...-+|..|+..|.+|+
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 47899999866 4567888999999999999885
No 58
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=25.56 E-value=61 Score=24.87 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=25.5
Q ss_pred cceeeEEEcCCCCeeeEeeCCCC--eEECCCCCccce
Q 033478 65 AHQVGQVKCASCAVLLMYPYGAP--SVRCSSCCFVTE 99 (118)
Q Consensus 65 a~q~a~v~Cg~Crt~LmyP~GA~--SVrCs~C~tVT~ 99 (118)
+.......|..|+..-+...+.+ ++.|+.|+.-.+
T Consensus 129 s~~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~~psR 165 (192)
T 2avu_E 129 SGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR 165 (192)
T ss_dssp TTSEEEEECTTTCCEEEEESSCCSSCCCCTTC-----
T ss_pred cCceeeCcCCCCCCCeeCccCCCCCCCcCCCCCCccc
Confidence 35566778999999999888876 999999995554
No 59
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=24.63 E-value=23 Score=25.32 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=21.6
Q ss_pred cceeeEE-EcCCCCeeeEeeCC----CCeEECCCCCccceecc
Q 033478 65 AHQVGQV-KCASCAVLLMYPYG----APSVRCSSCCFVTEIGV 102 (118)
Q Consensus 65 a~q~a~v-~Cg~Crt~LmyP~G----A~SVrCs~C~tVT~V~~ 102 (118)
..+|..+ -|..|+.+|....+ .....|..|.++-.+..
T Consensus 18 ~~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~ 60 (133)
T 3qt1_I 18 GSHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS 60 (133)
T ss_dssp ----CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC
T ss_pred CccccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC
Confidence 3334433 38888877655443 23588888888766543
No 60
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=23.61 E-value=39 Score=20.43 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=18.0
Q ss_pred eEEEcCCCCeeeEeeCCCCeEECCCCCcc
Q 033478 69 GQVKCASCAVLLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 69 a~v~Cg~Crt~LmyP~GA~SVrCs~C~tV 97 (118)
..+.|.+|... + | .-.+|+.|.-.
T Consensus 5 ~~~~Cd~C~~~-i---g-~R~~C~~C~dy 28 (52)
T 1tot_A 5 FVYTCNECKHH-V---E-TRWHCTVCEDY 28 (52)
T ss_dssp SCEEETTTTEE-E---S-SEEEESSSSSC
T ss_pred CEEECCCCCCC-C---c-ceEEcCCCCCc
Confidence 45789999987 2 6 45999999643
No 61
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=23.52 E-value=83 Score=21.96 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=31.1
Q ss_pred cccceeeeccccceeeecCCCCeEEcCCCCccccccccceeeEEEcCCCCeeeEeeCCC
Q 033478 28 QEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVLEAHQVGQVKCASCAVLLMYPYGA 86 (118)
Q Consensus 28 ~~~sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v~~a~q~a~v~Cg~Crt~LmyP~GA 86 (118)
+++-..+|..|.++|..-..++ |+ ........-.+.|..|+..=-||.+.
T Consensus 56 ~~~KR~~Ck~C~s~LIPG~t~~-vr--------i~~~~k~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 56 RKWKRRYCKKCHAFLVPGINAR-VR--------LRQKRMPHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp STTTTSBCTTTCCBCCBTTTEE-EE--------EECSSSCEEEEEETTTTEEEEEECCC
T ss_pred HHHHHHhccCCCCEeECCCceE-EE--------EecCCccEEEEECCCCCCEEEEecCc
Confidence 4456779999999988754442 11 11111114556788888888888764
No 62
>1pzw_A Transcription factor grauzone; dimerization, transcription regulation, treble-CLEF zinc FIN transcription; 2.00A {Drosophila melanogaster} SCOP: g.39.1.10
Probab=23.25 E-value=13 Score=22.67 Aligned_cols=23 Identities=22% Similarity=0.823 Sum_probs=16.7
Q ss_pred eeeecccCccccceeeecccccee
Q 033478 19 FWLTLTCYHQEMAQMVCGSCRRLL 42 (118)
Q Consensus 19 ~~~~~~~~~~~~sQLvCggCr~lL 42 (118)
||+.++. +....+.||..|...|
T Consensus 37 ~~i~i~~-~d~lP~~IC~~C~~~l 59 (80)
T 1pzw_A 37 FWFEVLP-NDEISKVICNVCWTQV 59 (80)
T ss_dssp CSSCCCS-SCSSCSEEEHHHHHHH
T ss_pred hCCCcCc-ccCCccchHHHHHHHH
Confidence 5666543 6678899999998655
No 63
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.72 E-value=76 Score=21.82 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=24.4
Q ss_pred ccceeeeccccce-eeecCCCCeEEcCCCCccccccc
Q 033478 29 EMAQMVCGSCRRL-LAYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 29 ~~sQLvCggCr~l-L~YprGA~sVrC~~C~tVn~v~~ 64 (118)
-+-...|.||..+ ..|..-.+-|.|..|+++=.-|.
T Consensus 33 ~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PT 69 (86)
T 3iz6_X 33 FFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPT 69 (86)
T ss_dssp CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCC
T ss_pred cEeEEECCCCCCeeEEEecCCcEEEccCCCCEeecCC
Confidence 3344667777653 56777778888888888766553
No 64
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=22.70 E-value=46 Score=30.50 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=27.5
Q ss_pred eeeecccccee----eecCCCCeEEcCCCCccccccc
Q 033478 32 QMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 32 QLvCggCr~lL----~YprGA~sVrC~~C~tVn~v~~ 64 (118)
-+.|..||..| .+-.|...-+|..|...|.+|+
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 47899999866 4667888999999999998875
No 65
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=22.67 E-value=54 Score=18.50 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=17.7
Q ss_pred eeeccccceeeecCCCCeEEcCCCCcc
Q 033478 33 MVCGSCRRLLAYPRGARHVKCSCCQTV 59 (118)
Q Consensus 33 LvCggCr~lL~YprGA~sVrC~~C~tV 59 (118)
-.|.-|+.+| +-.+....+|..|...
T Consensus 12 t~C~~C~~~l-~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 12 TFCDHCGSLL-WGLVKQGLKCEDCGMN 37 (50)
T ss_dssp CBCTTTCCBC-CSSSSCEEEETTTCCE
T ss_pred CCcCCCCcee-eccCCccCEeCCCCCe
Confidence 3577787766 5555677888887643
No 66
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=22.37 E-value=50 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.7
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCccce
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFVTE 99 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~ 99 (118)
-.|+.|+..+....+-..-.|+.|+.+.-
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred CccccCCCcCccCCCceeeeCCCCCCEec
Confidence 46999999998888888999999987644
No 67
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.93 E-value=40 Score=20.71 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=11.8
Q ss_pred EcCCCCe-eeEeeCCCCeEECCCCCcc
Q 033478 72 KCASCAV-LLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 72 ~Cg~Crt-~LmyP~GA~SVrCs~C~tV 97 (118)
.|..|+. .|.+-+.+.-+.|..|..|
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 3444433 3444444444555555444
No 68
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.93 E-value=43 Score=21.41 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=14.5
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCccceec
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFVTEIG 101 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tVT~V~ 101 (118)
..|..|++.=+ .-.|+.|+..|.++
T Consensus 7 r~C~~CgvYTL------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 7 KKCPKCGLYTL------KEICPKCGEKTVIP 31 (60)
T ss_dssp EECTTTCCEES------SSBCSSSCSBCBCC
T ss_pred eeCCCCCCEec------cccCcCCCCcCCCC
Confidence 45666654333 44577777776654
No 69
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.29 E-value=12 Score=21.28 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=5.0
Q ss_pred EECCCCCccce
Q 033478 89 VRCSSCCFVTE 99 (118)
Q Consensus 89 VrCs~C~tVT~ 99 (118)
|+|++|+-..+
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 44555544433
No 70
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=20.50 E-value=53 Score=20.77 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=17.4
Q ss_pred EEcCCCCeeeEeeCCCCeEECCCCCcc
Q 033478 71 VKCASCAVLLMYPYGAPSVRCSSCCFV 97 (118)
Q Consensus 71 v~Cg~Crt~LmyP~GA~SVrCs~C~tV 97 (118)
..|..|+..| +.+..+|..|...
T Consensus 36 t~C~~C~~~l----~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 36 GWCDLCGREV----LRQALRCANCKFT 58 (72)
T ss_dssp CBCTTTSSBC----SSCCEECTTSSCE
T ss_pred cchhhhhHHH----HhCcCccCCCCCe
Confidence 4588888887 6677888888654
No 71
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.46 E-value=27 Score=27.64 Aligned_cols=13 Identities=46% Similarity=0.991 Sum_probs=6.9
Q ss_pred eeEEEcCCCCeee
Q 033478 68 VGQVKCASCAVLL 80 (118)
Q Consensus 68 ~a~v~Cg~Crt~L 80 (118)
.+.++|..|+..|
T Consensus 40 ~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 40 EGDVVCALCGLVL 52 (345)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCEecCCCCeEc
Confidence 4445555555544
No 72
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=20.43 E-value=40 Score=29.98 Aligned_cols=34 Identities=26% Similarity=0.682 Sum_probs=28.1
Q ss_pred ceeeecccccee----eecCCCCeEEcCCCCccccccc
Q 033478 31 AQMVCGSCRRLL----AYPRGARHVKCSCCQTVNFVLE 64 (118)
Q Consensus 31 sQLvCggCr~lL----~YprGA~sVrC~~C~tVn~v~~ 64 (118)
+-+.|..||..| .+-.|...-+|..|+..|.+|+
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCch
Confidence 457999999865 4556778999999999999985
No 73
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=1.8e+02 Score=18.81 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred cccceeeeeecccCccccceeeeccccceeeecCCCCeEEcCCCCcccccc--ccceeeEEEcCCCCeeeEeeCCCCeEE
Q 033478 13 SLSQESFWLTLTCYHQEMAQMVCGSCRRLLAYPRGARHVKCSCCQTVNFVL--EAHQVGQVKCASCAVLLMYPYGAPSVR 90 (118)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~sQLvCggCr~lL~YprGA~sVrC~~C~tVn~v~--~a~q~a~v~Cg~Crt~LmyP~GA~SVr 90 (118)
+++|||...--+-.-.-.-+..|..|.-.= ...|+....|+.|+.--.+. .+.-+.+..|..|+-.=.+. .-.
T Consensus 9 ~vslee~~~G~~~~i~~~~~~~C~~C~G~G-~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----~~~ 83 (104)
T 2ctt_A 9 ELTFNQAAKGVNKEFTVNIMDTCERCNGKG-NEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII----ISP 83 (104)
T ss_dssp CCCCSSCCSSSCTTCCSSCCEECSSSSSSS-SCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC----SSC
T ss_pred EEEHHHHcCCCEEEEEeeeeeECCCCcCCc-cCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC----CCc
Confidence 466777654333332233456787776442 22355568899998654332 12223456777775321111 236
Q ss_pred CCCCCccceec
Q 033478 91 CSSCCFVTEIG 101 (118)
Q Consensus 91 Cs~C~tVT~V~ 101 (118)
|+.|+.--.+.
T Consensus 84 C~~C~G~G~v~ 94 (104)
T 2ctt_A 84 CVVCRGAGQAK 94 (104)
T ss_dssp CSSSSSCSEEC
T ss_pred CCCCCCeeEEE
Confidence 88887655554
No 74
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=20.07 E-value=22 Score=22.90 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=0.0
Q ss_pred EEcCCCCccccccccceeeEEEcCCCCeee
Q 033478 51 VKCSCCQTVNFVLEAHQVGQVKCASCAVLL 80 (118)
Q Consensus 51 VrC~~C~tVn~v~~a~q~a~v~Cg~Crt~L 80 (118)
++|+.|.++|..|.-.-.....|+.|+..+
T Consensus 3 ~~~~~~~~~~~~~~~r~~~~~~~~~c~~~~ 32 (140)
T 1v98_A 3 VTCPKCGAKNRLGTPPPGQVPVCGACKTPL 32 (140)
T ss_dssp ------------------------------
T ss_pred eEcccccccccCCcccccCCcccccccCCC
Confidence 566666666665532212223455555443
Done!