Query 033480
Match_columns 118
No_of_seqs 117 out of 1249
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13344 Hydrolase_6: Haloacid 99.8 9.9E-21 2.1E-25 125.4 8.9 83 33-116 1-84 (101)
2 COG0647 NagD Predicted sugar p 99.8 5E-19 1.1E-23 135.1 8.8 91 23-116 3-95 (269)
3 PLN02645 phosphoglycolate phos 99.7 9E-17 1.9E-21 124.4 11.3 99 15-116 15-116 (311)
4 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 1.9E-16 4.2E-21 119.1 10.1 86 30-116 1-87 (249)
5 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.7 3.8E-16 8.3E-21 116.6 9.8 84 22-108 2-86 (242)
6 PRK10444 UMP phosphatase; Prov 99.7 3.8E-16 8.2E-21 117.9 9.7 85 30-116 1-86 (248)
7 TIGR01452 PGP_euk phosphoglyco 99.7 7.2E-16 1.6E-20 117.5 10.1 87 29-116 1-89 (279)
8 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.6 3.2E-15 7E-20 113.0 9.5 80 30-110 1-85 (257)
9 KOG2882 p-Nitrophenyl phosphat 99.6 5.3E-15 1.2E-19 113.8 9.4 96 18-116 12-110 (306)
10 TIGR01460 HAD-SF-IIA Haloacid 99.6 7.7E-15 1.7E-19 109.6 8.8 83 33-116 1-85 (236)
11 TIGR01684 viral_ppase viral ph 99.3 4E-12 8.7E-17 98.2 5.6 74 29-105 125-202 (301)
12 TIGR01456 CECR5 HAD-superfamil 99.3 8.8E-12 1.9E-16 97.0 7.1 77 32-109 2-84 (321)
13 KOG3040 Predicted sugar phosph 99.3 2.4E-11 5.2E-16 90.1 7.7 84 28-112 5-89 (262)
14 PHA03398 viral phosphatase sup 99.2 4.2E-11 9.2E-16 92.6 5.6 74 29-105 127-204 (303)
15 TIGR01681 HAD-SF-IIIC HAD-supe 99.1 8.6E-11 1.9E-15 80.4 4.2 67 31-99 1-87 (128)
16 TIGR01664 DNA-3'-Pase DNA 3'-p 99.1 4.2E-10 9.2E-15 80.3 7.2 70 27-99 10-102 (166)
17 cd01427 HAD_like Haloacid deha 99.1 4.8E-10 1E-14 73.9 6.2 68 32-102 1-77 (139)
18 TIGR01662 HAD-SF-IIIA HAD-supe 99.0 7.2E-10 1.6E-14 75.2 6.3 58 31-88 1-73 (132)
19 PRK13288 pyrophosphatase PpaX; 99.0 7.7E-10 1.7E-14 80.6 6.5 53 46-101 82-134 (214)
20 TIGR01685 MDP-1 magnesium-depe 99.0 1E-09 2.3E-14 79.2 6.1 69 30-101 2-107 (174)
21 PRK14988 GMP/IMP nucleotidase; 99.0 8.3E-10 1.8E-14 81.8 5.8 53 46-101 93-145 (224)
22 COG0637 Predicted phosphatase/ 99.0 1.3E-09 2.7E-14 80.9 6.4 56 46-104 86-141 (221)
23 PLN02575 haloacid dehalogenase 98.9 1.7E-09 3.7E-14 86.4 6.2 52 47-101 217-268 (381)
24 TIGR00213 GmhB_yaeD D,D-heptos 98.9 3.5E-09 7.5E-14 75.6 7.2 43 31-73 2-53 (176)
25 TIGR01656 Histidinol-ppas hist 98.9 4.1E-09 8.8E-14 73.3 7.3 58 31-88 1-82 (147)
26 PRK08942 D,D-heptose 1,7-bisph 98.9 7.9E-09 1.7E-13 73.9 8.1 67 29-98 2-91 (181)
27 PRK11587 putative phosphatase; 98.9 8.1E-09 1.8E-13 75.6 8.0 53 45-101 82-134 (218)
28 PLN03243 haloacid dehalogenase 98.9 3.6E-09 7.9E-14 80.3 6.3 53 46-101 109-161 (260)
29 TIGR01261 hisB_Nterm histidino 98.9 6.4E-09 1.4E-13 74.0 7.0 63 31-96 2-89 (161)
30 TIGR01670 YrbI-phosphatas 3-de 98.9 6.9E-09 1.5E-13 72.9 7.0 76 30-110 1-89 (154)
31 PRK10513 sugar phosphate phosp 98.9 6.3E-09 1.4E-13 78.1 7.3 60 28-89 1-61 (270)
32 PRK01158 phosphoglycolate phos 98.9 7.2E-09 1.6E-13 75.9 6.9 60 28-89 1-61 (230)
33 PRK00192 mannosyl-3-phosphogly 98.9 5.7E-09 1.2E-13 79.1 6.4 61 28-90 2-63 (273)
34 PRK10530 pyridoxal phosphate ( 98.8 1.2E-08 2.5E-13 76.4 7.4 59 28-88 1-60 (272)
35 PRK06769 hypothetical protein; 98.8 1.2E-08 2.7E-13 72.9 6.9 62 29-90 3-78 (173)
36 PHA02530 pseT polynucleotide k 98.8 6.7E-09 1.4E-13 79.3 5.7 81 30-114 158-252 (300)
37 PRK10826 2-deoxyglucose-6-phos 98.8 1.2E-08 2.5E-13 74.8 6.7 54 44-100 90-143 (222)
38 TIGR01689 EcbF-BcbF capsule bi 98.8 1.8E-08 3.9E-13 69.3 7.2 65 31-98 2-86 (126)
39 TIGR01672 AphA HAD superfamily 98.8 1.7E-08 3.6E-13 76.1 6.9 83 15-100 48-169 (237)
40 COG0546 Gph Predicted phosphat 98.8 3.2E-08 6.8E-13 73.0 7.7 49 46-97 89-137 (220)
41 TIGR01668 YqeG_hyp_ppase HAD s 98.8 5.9E-08 1.3E-12 69.2 8.7 82 27-110 22-105 (170)
42 TIGR02461 osmo_MPG_phos mannos 98.8 2.3E-08 4.9E-13 74.4 6.5 55 33-89 2-56 (225)
43 PRK13225 phosphoglycolate phos 98.7 2.2E-08 4.8E-13 76.6 6.2 52 46-100 142-193 (273)
44 smart00577 CPDc catalytic doma 98.7 2.3E-08 5E-13 69.8 5.8 70 30-102 2-98 (148)
45 PRK15126 thiamin pyrimidine py 98.7 3.6E-08 7.7E-13 74.4 7.1 58 30-89 2-60 (272)
46 TIGR01487 SPP-like sucrose-pho 98.7 3.2E-08 7E-13 72.2 6.5 57 30-88 1-58 (215)
47 PRK13226 phosphoglycolate phos 98.7 3.1E-08 6.8E-13 73.3 6.3 53 46-101 95-147 (229)
48 PRK10976 putative hydrolase; P 98.7 4E-08 8.7E-13 73.7 6.9 58 30-89 2-60 (266)
49 PRK03669 mannosyl-3-phosphogly 98.7 4.1E-08 8.8E-13 74.4 6.9 59 28-88 5-64 (271)
50 TIGR01686 FkbH FkbH-like domai 98.7 2.6E-08 5.6E-13 77.4 5.5 67 29-98 2-84 (320)
51 TIGR01533 lipo_e_P4 5'-nucleot 98.7 1.1E-07 2.3E-12 72.9 8.4 70 29-98 74-171 (266)
52 COG0561 Cof Predicted hydrolas 98.7 6E-08 1.3E-12 72.8 6.9 60 28-89 1-61 (264)
53 PLN02940 riboflavin kinase 98.7 5E-08 1.1E-12 77.8 6.6 53 46-101 93-146 (382)
54 TIGR01663 PNK-3'Pase polynucle 98.7 3.8E-08 8.3E-13 81.5 6.0 75 20-99 160-257 (526)
55 TIGR02726 phenyl_P_delta pheny 98.7 5.4E-08 1.2E-12 69.9 5.8 79 29-110 6-95 (169)
56 PTZ00174 phosphomannomutase; P 98.7 6.3E-08 1.4E-12 72.6 6.4 54 28-83 3-57 (247)
57 KOG1618 Predicted phosphatase 98.7 5.8E-08 1.2E-12 76.0 6.3 77 29-106 34-116 (389)
58 PRK09484 3-deoxy-D-manno-octul 98.6 1.2E-07 2.6E-12 68.3 7.2 79 29-110 20-109 (183)
59 COG2179 Predicted hydrolase of 98.6 2.3E-07 5.1E-12 66.5 8.5 85 22-110 21-107 (175)
60 PRK11009 aphA acid phosphatase 98.6 1.3E-07 2.9E-12 71.3 7.6 84 15-99 48-170 (237)
61 PRK12702 mannosyl-3-phosphogly 98.6 9E-08 1.9E-12 74.3 6.6 59 30-90 1-60 (302)
62 PRK13222 phosphoglycolate phos 98.6 1.3E-07 2.9E-12 68.7 7.2 53 45-100 92-144 (226)
63 PRK13223 phosphoglycolate phos 98.6 9.4E-08 2E-12 72.8 6.2 53 45-100 100-152 (272)
64 PRK10725 fructose-1-P/6-phosph 98.6 1.3E-07 2.8E-12 67.2 6.2 52 45-101 87-138 (188)
65 TIGR01486 HAD-SF-IIB-MPGP mann 98.6 1.5E-07 3.3E-12 70.5 6.8 54 33-88 2-56 (256)
66 PLN02887 hydrolase family prot 98.6 1.7E-07 3.8E-12 78.4 7.7 59 28-88 306-365 (580)
67 smart00775 LNS2 LNS2 domain. T 98.6 1.6E-07 3.4E-12 66.5 6.4 52 33-84 2-66 (157)
68 TIGR02463 MPGP_rel mannosyl-3- 98.6 1.7E-07 3.7E-12 68.5 6.7 54 33-88 2-56 (221)
69 PRK05446 imidazole glycerol-ph 98.5 2.8E-07 6E-12 73.2 7.5 65 29-96 1-90 (354)
70 PF08282 Hydrolase_3: haloacid 98.5 2.2E-07 4.9E-12 67.4 6.5 54 33-88 1-55 (254)
71 TIGR00338 serB phosphoserine p 98.5 4.1E-07 9E-12 66.2 7.7 45 46-93 85-129 (219)
72 TIGR00099 Cof-subfamily Cof su 98.5 2.9E-07 6.4E-12 68.7 7.0 55 32-88 1-56 (256)
73 TIGR01482 SPP-subfamily Sucros 98.5 2.5E-07 5.4E-12 67.4 5.9 54 33-88 1-55 (225)
74 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.5 4.5E-07 9.7E-12 64.7 6.0 50 44-96 78-127 (201)
75 PLN02954 phosphoserine phospha 98.4 9.4E-07 2E-11 64.5 6.9 40 47-88 85-124 (224)
76 PLN02770 haloacid dehalogenase 98.4 5.3E-07 1.2E-11 67.6 5.1 55 44-101 106-160 (248)
77 PRK10563 6-phosphogluconate ph 98.3 1.6E-06 3.5E-11 63.3 6.4 51 44-100 86-137 (221)
78 TIGR01428 HAD_type_II 2-haloal 98.3 1.4E-06 3E-11 62.6 5.8 55 44-101 90-144 (198)
79 COG0241 HisB Histidinol phosph 98.3 4.6E-06 1E-10 60.7 8.1 66 29-97 4-92 (181)
80 PLN02919 haloacid dehalogenase 98.3 1.8E-06 3.9E-11 76.6 7.1 53 47-102 162-215 (1057)
81 TIGR02253 CTE7 HAD superfamily 98.3 8.9E-07 1.9E-11 64.3 4.0 54 45-101 93-146 (221)
82 COG1778 Low specificity phosph 98.2 3.2E-06 7E-11 60.3 6.1 79 29-110 7-96 (170)
83 PRK13582 thrH phosphoserine ph 98.2 5.2E-06 1.1E-10 59.7 7.2 44 46-93 68-111 (205)
84 TIGR01675 plant-AP plant acid 98.2 4.8E-06 1E-10 62.6 7.1 68 29-98 76-171 (229)
85 TIGR01484 HAD-SF-IIB HAD-super 98.2 3.3E-06 7.2E-11 60.9 6.0 51 33-85 2-54 (204)
86 PRK14502 bifunctional mannosyl 98.2 3.4E-06 7.5E-11 71.7 6.7 59 28-88 414-473 (694)
87 TIGR01422 phosphonatase phosph 98.2 1.8E-06 3.9E-11 64.5 4.2 57 43-101 96-152 (253)
88 PF12689 Acid_PPase: Acid Phos 98.2 5.5E-06 1.2E-10 59.6 6.2 58 30-88 3-86 (169)
89 TIGR01449 PGP_bact 2-phosphogl 98.2 3.5E-06 7.6E-11 60.8 4.9 53 45-100 84-136 (213)
90 TIGR02471 sucr_syn_bact_C sucr 98.2 3E-06 6.5E-11 62.7 4.6 64 33-101 2-65 (236)
91 TIGR01454 AHBA_synth_RP 3-amin 98.2 3.3E-06 7.1E-11 61.0 4.7 54 44-100 73-126 (205)
92 PF03767 Acid_phosphat_B: HAD 98.1 1.9E-06 4.1E-11 64.5 3.4 66 29-96 71-164 (229)
93 TIGR01485 SPP_plant-cyano sucr 98.1 4.8E-06 1.1E-10 62.2 5.3 63 32-98 3-69 (249)
94 PRK10187 trehalose-6-phosphate 98.1 6.7E-06 1.4E-10 62.6 6.0 55 30-86 14-75 (266)
95 PF13419 HAD_2: Haloacid dehal 98.1 5.4E-06 1.2E-10 56.9 4.7 56 43-101 74-129 (176)
96 PF08645 PNK3P: Polynucleotide 98.1 3.5E-06 7.6E-11 59.8 3.8 59 31-89 1-84 (159)
97 TIGR01680 Veg_Stor_Prot vegeta 98.1 1.4E-05 3E-10 61.5 7.1 68 29-98 100-196 (275)
98 TIGR03351 PhnX-like phosphonat 98.1 5.3E-06 1.2E-10 60.4 4.7 54 45-101 86-141 (220)
99 TIGR01990 bPGM beta-phosphoglu 98.1 8.6E-06 1.9E-10 57.4 5.6 52 45-101 86-137 (185)
100 PRK08238 hypothetical protein; 98.1 9.1E-06 2E-10 66.9 6.4 49 47-101 73-121 (479)
101 PHA02597 30.2 hypothetical pro 98.1 1.1E-05 2.5E-10 57.8 5.9 55 43-100 71-128 (197)
102 TIGR02252 DREG-2 REG-2-like, H 98.0 6.4E-06 1.4E-10 59.2 4.5 52 46-101 105-156 (203)
103 PRK09449 dUMP phosphatase; Pro 98.0 4E-06 8.7E-11 61.2 3.4 53 45-101 94-146 (224)
104 TIGR02250 FCP1_euk FCP1-like p 98.0 1.5E-05 3.2E-10 56.5 6.1 71 29-102 5-112 (156)
105 PLN02423 phosphomannomutase 98.0 7.9E-06 1.7E-10 61.4 4.9 54 28-84 4-59 (245)
106 PRK09552 mtnX 2-hydroxy-3-keto 98.0 1.6E-05 3.4E-10 58.4 6.3 42 44-88 72-113 (219)
107 TIGR02247 HAD-1A3-hyp Epoxide 98.0 5.7E-06 1.2E-10 59.9 3.9 56 45-101 93-148 (211)
108 TIGR02009 PGMB-YQAB-SF beta-ph 98.0 1.1E-05 2.4E-10 56.9 5.1 53 44-101 86-138 (185)
109 PF09419 PGP_phosphatase: Mito 98.0 2.6E-05 5.7E-10 56.1 6.9 63 27-89 38-109 (168)
110 TIGR01509 HAD-SF-IA-v3 haloaci 98.0 7.1E-06 1.5E-10 57.4 4.0 52 45-100 84-135 (183)
111 PRK06698 bifunctional 5'-methy 98.0 1.1E-05 2.4E-10 65.5 5.0 54 45-101 329-382 (459)
112 PRK13478 phosphonoacetaldehyde 98.0 1.1E-05 2.4E-10 60.8 4.6 56 44-101 99-154 (267)
113 TIGR01548 HAD-SF-IA-hyp1 haloa 97.9 1.3E-05 2.8E-10 57.7 4.5 53 46-101 106-158 (197)
114 COG2503 Predicted secreted aci 97.9 3.7E-05 8.1E-10 58.4 6.0 62 29-90 78-168 (274)
115 TIGR02251 HIF-SF_euk Dullard-l 97.9 4.4E-05 9.6E-10 54.1 6.0 67 31-101 2-94 (162)
116 PF08235 LNS2: LNS2 (Lipin/Ned 97.8 5.9E-05 1.3E-09 53.7 6.1 63 33-98 2-82 (157)
117 TIGR02137 HSK-PSP phosphoserin 97.8 4.6E-05 1E-09 56.0 5.2 44 46-93 68-111 (203)
118 COG3769 Predicted hydrolase (H 97.8 6.7E-05 1.5E-09 56.5 6.0 60 29-90 6-65 (274)
119 TIGR02254 YjjG/YfnB HAD superf 97.8 3.5E-05 7.5E-10 55.8 4.4 53 45-101 96-148 (224)
120 PRK11133 serB phosphoserine ph 97.8 9E-05 2E-09 58.1 6.9 42 46-89 181-222 (322)
121 COG1011 Predicted hydrolase (H 97.8 3.4E-05 7.3E-10 56.0 4.1 54 45-102 98-151 (229)
122 PRK09456 ?-D-glucose-1-phospha 97.7 2.7E-05 5.9E-10 56.2 3.3 53 46-101 84-137 (199)
123 PF05152 DUF705: Protein of un 97.7 9.4E-05 2E-09 57.3 5.7 73 29-104 121-197 (297)
124 COG4996 Predicted phosphatase 97.7 0.00011 2.5E-09 51.2 5.3 65 31-98 1-90 (164)
125 TIGR01489 DKMTPPase-SF 2,3-dik 97.6 8.8E-05 1.9E-09 52.2 4.7 51 45-98 71-121 (188)
126 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 8.3E-05 1.8E-09 51.1 3.8 53 44-100 62-114 (154)
127 TIGR02244 HAD-IG-Ncltidse HAD 97.6 8E-05 1.7E-09 59.0 4.1 62 36-100 166-243 (343)
128 PLN02811 hydrolase 97.6 7.6E-05 1.6E-09 54.7 3.8 53 44-99 76-129 (220)
129 COG0560 SerB Phosphoserine pho 97.5 0.00034 7.3E-09 51.8 6.0 43 46-90 77-119 (212)
130 PRK14501 putative bifunctional 97.5 0.00046 9.9E-09 59.2 7.4 66 19-86 481-553 (726)
131 PLN03017 trehalose-phosphatase 97.4 0.00026 5.7E-09 56.6 4.9 44 29-73 110-159 (366)
132 TIGR01993 Pyr-5-nucltdase pyri 97.4 0.00013 2.9E-09 51.7 2.7 52 44-101 82-133 (184)
133 PRK10748 flavin mononucleotide 97.3 0.00023 4.9E-09 53.0 3.1 48 45-101 112-159 (238)
134 PF03031 NIF: NLI interacting 97.3 0.00018 4E-09 50.0 2.3 66 31-100 1-87 (159)
135 PLN02151 trehalose-phosphatase 97.2 0.00088 1.9E-08 53.4 5.9 52 29-83 97-154 (354)
136 PLN02382 probable sucrose-phos 97.2 0.0013 2.8E-08 53.2 6.9 67 29-99 8-78 (413)
137 PLN02205 alpha,alpha-trehalose 97.2 0.0013 2.9E-08 57.7 7.3 55 28-84 594-653 (854)
138 TIGR01691 enolase-ppase 2,3-di 97.2 0.0009 1.9E-08 49.9 5.3 48 46-96 95-145 (220)
139 PTZ00445 p36-lilke protein; Pr 97.1 0.00085 1.8E-08 50.1 4.7 57 16-72 29-101 (219)
140 PF05116 S6PP: Sucrose-6F-phos 97.1 0.00037 8E-09 52.5 2.8 67 30-100 2-69 (247)
141 PF06888 Put_Phosphatase: Puta 97.1 0.0024 5.2E-08 48.2 7.1 53 43-98 68-122 (234)
142 PLN02580 trehalose-phosphatase 97.1 0.0015 3.1E-08 52.7 5.8 54 28-84 117-176 (384)
143 PLN02779 haloacid dehalogenase 97.0 0.0012 2.6E-08 50.7 4.9 39 46-86 144-182 (286)
144 TIGR00685 T6PP trehalose-phosp 97.0 0.0013 2.8E-08 49.2 5.0 44 29-72 2-52 (244)
145 TIGR01525 ATPase-IB_hvy heavy 97.0 0.0021 4.6E-08 53.5 6.5 66 28-96 362-432 (556)
146 TIGR01544 HAD-SF-IE haloacid d 97.0 0.0029 6.4E-08 48.9 6.5 45 44-90 119-163 (277)
147 TIGR01493 HAD-SF-IA-v2 Haloaci 96.8 0.00054 1.2E-08 48.0 1.2 49 43-101 87-135 (175)
148 PRK11590 hypothetical protein; 96.8 0.0033 7.2E-08 45.9 5.3 50 46-99 95-145 (211)
149 TIGR01488 HAD-SF-IB Haloacid D 96.7 0.004 8.6E-08 43.4 4.8 46 43-90 70-115 (177)
150 TIGR01512 ATPase-IB2_Cd heavy 96.6 0.0047 1E-07 51.3 5.4 66 29-97 341-411 (536)
151 COG1877 OtsB Trehalose-6-phosp 96.5 0.0083 1.8E-07 46.1 6.2 54 28-83 16-76 (266)
152 PLN03063 alpha,alpha-trehalose 96.5 0.013 2.9E-07 51.1 7.7 55 28-84 505-569 (797)
153 PLN03064 alpha,alpha-trehalose 96.4 0.012 2.7E-07 52.1 7.3 57 28-86 589-661 (934)
154 PF00702 Hydrolase: haloacid d 96.4 0.0039 8.5E-08 44.4 3.4 48 40-89 121-168 (215)
155 TIGR02245 HAD_IIID1 HAD-superf 96.3 0.011 2.5E-07 43.4 5.7 56 29-87 20-83 (195)
156 TIGR01490 HAD-SF-IB-hyp1 HAD-s 96.3 0.0054 1.2E-07 43.8 3.8 43 46-90 87-129 (202)
157 TIGR01511 ATPase-IB1_Cu copper 96.3 0.01 2.2E-07 49.7 5.8 64 29-96 384-451 (562)
158 TIGR01545 YfhB_g-proteo haloac 96.1 0.013 2.9E-07 43.1 5.2 40 46-87 94-134 (210)
159 COG4359 Uncharacterized conser 96.0 0.032 6.9E-07 41.2 6.4 39 46-86 73-111 (220)
160 KOG3085 Predicted hydrolase (H 96.0 0.01 2.2E-07 44.9 4.0 54 46-103 113-166 (237)
161 KOG2914 Predicted haloacid-hal 95.9 0.012 2.5E-07 44.2 3.9 52 43-97 89-141 (222)
162 TIGR03333 salvage_mtnX 2-hydro 95.8 0.02 4.3E-07 41.8 4.9 42 44-87 68-109 (214)
163 TIGR02253 CTE7 HAD superfamily 95.8 0.013 2.8E-07 42.3 3.9 35 30-64 2-37 (221)
164 KOG3109 Haloacid dehalogenase- 95.8 0.013 2.8E-07 44.2 3.8 32 65-99 117-148 (244)
165 PF02358 Trehalose_PPase: Treh 95.8 0.0078 1.7E-07 44.6 2.6 39 34-72 1-46 (235)
166 COG4087 Soluble P-type ATPase 95.5 0.046 1E-06 38.3 5.5 71 34-110 18-90 (152)
167 COG3882 FkbH Predicted enzyme 95.5 0.053 1.2E-06 45.1 6.7 44 29-72 221-281 (574)
168 KOG1615 Phosphoserine phosphat 95.4 0.071 1.5E-06 39.7 6.4 41 47-89 89-129 (227)
169 PRK13478 phosphonoacetaldehyde 95.1 0.025 5.5E-07 42.5 3.5 19 28-46 2-20 (267)
170 PF04312 DUF460: Protein of un 95.0 0.13 2.7E-06 36.0 6.3 60 31-90 44-104 (138)
171 TIGR01522 ATPase-IIA2_Ca golgi 94.9 0.074 1.6E-06 46.9 6.3 71 28-101 501-580 (884)
172 KOG2116 Protein involved in pl 94.9 0.044 9.5E-07 46.9 4.5 76 29-106 529-622 (738)
173 TIGR01422 phosphonatase phosph 94.8 0.04 8.7E-07 40.9 3.7 17 30-46 2-18 (253)
174 PRK09449 dUMP phosphatase; Pro 94.5 0.028 6.1E-07 40.8 2.4 16 28-43 1-16 (224)
175 KOG2134 Polynucleotide kinase 94.4 0.063 1.4E-06 43.5 4.2 62 29-90 74-158 (422)
176 PF06437 ISN1: IMP-specific 5' 94.3 0.17 3.6E-06 41.0 6.4 56 29-84 146-205 (408)
177 PRK10671 copA copper exporting 94.2 0.15 3.2E-06 44.7 6.5 66 28-96 628-697 (834)
178 PF12710 HAD: haloacid dehalog 94.0 0.1 2.3E-06 36.5 4.3 39 49-89 92-130 (192)
179 PLN02770 haloacid dehalogenase 93.9 0.029 6.3E-07 41.9 1.4 22 26-47 18-39 (248)
180 PF05761 5_nucleotid: 5' nucle 93.9 0.05 1.1E-06 44.7 2.8 52 48-100 185-243 (448)
181 PRK11033 zntA zinc/cadmium/mer 93.7 0.24 5.2E-06 43.0 6.8 61 28-90 546-610 (741)
182 TIGR03351 PhnX-like phosphonat 93.6 0.061 1.3E-06 38.9 2.6 19 30-48 1-19 (220)
183 TIGR02252 DREG-2 REG-2-like, H 93.5 0.061 1.3E-06 38.4 2.5 18 31-48 1-18 (203)
184 PLN02779 haloacid dehalogenase 93.5 0.053 1.1E-06 41.6 2.2 25 24-48 34-59 (286)
185 KOG4549 Magnesium-dependent ph 93.3 0.34 7.4E-06 33.7 5.7 42 47-89 45-86 (144)
186 TIGR02886 spore_II_AA anti-sig 93.2 0.62 1.3E-05 29.9 6.7 58 29-90 38-95 (106)
187 KOG3189 Phosphomannomutase [Li 93.2 0.17 3.6E-06 37.9 4.4 41 30-71 11-52 (252)
188 PF06941 NT5C: 5' nucleotidase 93.2 0.11 2.5E-06 37.2 3.5 45 41-85 68-117 (191)
189 PF06189 5-nucleotidase: 5'-nu 93.2 0.16 3.6E-06 39.0 4.3 76 33-110 124-233 (264)
190 PRK10748 flavin mononucleotide 92.9 0.063 1.4E-06 39.8 1.8 20 29-48 9-28 (238)
191 COG4850 Uncharacterized conser 92.9 0.33 7.2E-06 38.7 5.8 73 29-101 160-262 (373)
192 PRK11590 hypothetical protein; 92.8 0.14 3E-06 37.3 3.5 17 29-45 5-21 (211)
193 COG5083 SMP2 Uncharacterized p 92.7 0.37 8.1E-06 39.9 6.0 44 29-72 374-429 (580)
194 TIGR02009 PGMB-YQAB-SF beta-ph 92.4 0.071 1.5E-06 37.3 1.4 18 30-47 1-18 (185)
195 cd07041 STAS_RsbR_RsbS_like Su 91.9 0.83 1.8E-05 29.4 6.1 57 29-89 40-96 (109)
196 TIGR02254 YjjG/YfnB HAD superf 91.9 0.087 1.9E-06 37.9 1.4 18 30-47 1-18 (224)
197 TIGR01548 HAD-SF-IA-hyp1 haloa 91.9 0.084 1.8E-06 37.7 1.3 16 31-46 1-16 (197)
198 KOG2961 Predicted hydrolase (H 91.1 1.1 2.3E-05 32.4 6.2 68 23-90 36-113 (190)
199 COG1366 SpoIIAA Anti-anti-sigm 90.7 1.4 2.9E-05 29.1 6.2 67 20-90 34-100 (117)
200 COG0826 Collagenase and relate 90.7 1.2 2.7E-05 35.4 6.9 90 20-115 18-116 (347)
201 PF01740 STAS: STAS domain; I 90.5 0.53 1.1E-05 30.7 4.1 57 30-90 48-104 (117)
202 KOG3120 Predicted haloacid deh 90.4 0.26 5.7E-06 37.4 2.7 52 43-97 81-133 (256)
203 PRK06698 bifunctional 5'-methy 90.3 0.13 2.8E-06 41.9 1.0 30 29-58 240-270 (459)
204 PF00702 Hydrolase: haloacid d 90.2 0.2 4.3E-06 35.5 1.9 31 30-60 1-33 (215)
205 PRK05301 pyrroloquinoline quin 89.9 1.1 2.4E-05 35.5 6.1 41 48-88 76-116 (378)
206 TIGR01428 HAD_type_II 2-haloal 89.9 0.11 2.4E-06 36.9 0.4 17 30-46 1-17 (198)
207 COG2217 ZntA Cation transport 89.9 0.76 1.6E-05 40.0 5.4 66 32-100 519-588 (713)
208 TIGR01993 Pyr-5-nucltdase pyri 89.7 0.2 4.4E-06 35.2 1.7 16 31-46 1-16 (184)
209 TIGR01497 kdpB K+-transporting 89.4 0.9 2E-05 39.3 5.5 61 28-90 424-488 (675)
210 TIGR02109 PQQ_syn_pqqE coenzym 89.4 1.3 2.8E-05 34.7 6.1 41 48-88 67-107 (358)
211 COG1011 Predicted hydrolase (H 89.0 0.35 7.5E-06 34.8 2.4 20 28-47 2-21 (229)
212 TIGR02247 HAD-1A3-hyp Epoxide 88.8 0.28 6.1E-06 35.2 1.8 16 30-45 2-17 (211)
213 PRK14010 potassium-transportin 88.5 0.82 1.8E-05 39.5 4.7 75 29-108 420-498 (673)
214 TIGR01517 ATPase-IIB_Ca plasma 88.2 1.7 3.6E-05 38.8 6.6 59 39-100 572-630 (941)
215 PRK10076 pyruvate formate lyas 87.9 0.91 2E-05 33.7 4.1 66 17-84 20-89 (213)
216 TIGR01116 ATPase-IIA1_Ca sarco 87.8 1 2.3E-05 40.0 5.1 44 44-89 535-578 (917)
217 PRK01122 potassium-transportin 87.7 1.7 3.8E-05 37.6 6.2 76 28-108 423-502 (679)
218 TIGR01493 HAD-SF-IA-v2 Haloaci 87.7 0.19 4.2E-06 34.9 0.3 15 32-46 1-15 (175)
219 cd06844 STAS Sulphate Transpor 87.5 2 4.3E-05 27.4 5.1 57 29-89 38-94 (100)
220 TIGR01990 bPGM beta-phosphoglu 87.4 0.25 5.5E-06 34.4 0.8 16 32-47 1-16 (185)
221 TIGR00377 ant_ant_sig anti-ant 87.4 2.5 5.5E-05 26.9 5.6 58 29-90 42-99 (108)
222 TIGR01106 ATPase-IIC_X-K sodiu 87.0 1.2 2.5E-05 40.1 4.9 42 45-88 567-608 (997)
223 PRK10517 magnesium-transportin 86.7 1.6 3.5E-05 38.9 5.6 54 43-101 547-600 (902)
224 cd07043 STAS_anti-anti-sigma_f 86.7 2.7 5.8E-05 26.0 5.3 57 30-90 38-94 (99)
225 COG4229 Predicted enolase-phos 86.6 0.76 1.6E-05 34.1 2.9 43 30-72 79-129 (229)
226 TIGR01545 YfhB_g-proteo haloac 86.5 0.52 1.1E-05 34.6 2.1 19 29-47 4-22 (210)
227 PRK15452 putative protease; Pr 86.3 3.1 6.7E-05 34.3 6.7 84 28-116 22-114 (443)
228 TIGR01549 HAD-SF-IA-v1 haloaci 86.1 0.27 5.9E-06 33.4 0.4 15 32-46 1-15 (154)
229 TIGR01449 PGP_bact 2-phosphogl 85.9 0.31 6.8E-06 34.8 0.7 14 33-46 1-14 (213)
230 COG0731 Fe-S oxidoreductases [ 85.9 1.7 3.7E-05 34.0 4.8 46 47-101 93-139 (296)
231 COG0602 NrdG Organic radical a 85.5 1 2.3E-05 33.3 3.3 51 20-72 57-109 (212)
232 COG2433 Uncharacterized conser 85.4 8.6 0.00019 33.1 8.9 70 31-100 256-326 (652)
233 TIGR01647 ATPase-IIIA_H plasma 85.2 1.9 4.2E-05 37.6 5.2 59 28-88 415-482 (755)
234 TIGR01509 HAD-SF-IA-v3 haloaci 84.6 0.4 8.7E-06 33.1 0.7 15 32-46 1-15 (183)
235 cd06595 GH31_xylosidase_XylS-l 84.4 2.3 5E-05 32.7 4.9 43 29-71 40-96 (292)
236 TIGR01454 AHBA_synth_RP 3-amin 84.3 0.41 8.9E-06 34.2 0.7 15 33-47 1-15 (205)
237 TIGR01490 HAD-SF-IB-hyp1 HAD-s 83.8 0.59 1.3E-05 33.2 1.3 13 33-45 2-14 (202)
238 cd06591 GH31_xylosidase_XylS X 83.8 2.4 5.3E-05 33.0 4.8 42 29-70 39-87 (319)
239 TIGR02495 NrdG2 anaerobic ribo 83.8 3.5 7.6E-05 29.1 5.3 65 15-86 46-112 (191)
240 PRK15122 magnesium-transportin 83.7 2.5 5.5E-05 37.6 5.4 54 42-100 546-599 (903)
241 PF12710 HAD: haloacid dehalog 82.5 0.82 1.8E-05 31.8 1.6 13 33-45 1-13 (192)
242 PRK11660 putative transporter; 82.3 3.9 8.4E-05 34.4 5.8 76 29-109 490-566 (568)
243 TIGR01488 HAD-SF-IB Haloacid D 82.3 0.66 1.4E-05 32.0 1.0 14 33-46 2-15 (177)
244 cd06598 GH31_transferase_CtsZ 81.5 6.2 0.00013 30.7 6.3 43 29-71 39-92 (317)
245 TIGR02468 sucrsPsyn_pln sucros 81.5 5.3 0.00012 36.4 6.6 70 30-105 770-845 (1050)
246 TIGR01524 ATPase-IIIB_Mg magne 81.5 2.9 6.3E-05 37.1 4.9 44 43-88 512-555 (867)
247 TIGR02826 RNR_activ_nrdG3 anae 81.3 1 2.2E-05 31.5 1.7 53 15-72 45-98 (147)
248 KOG2470 Similar to IMP-GMP spe 80.5 1.7 3.6E-05 35.4 2.8 27 48-74 242-268 (510)
249 PF11019 DUF2608: Protein of u 80.0 4.5 9.7E-05 30.7 5.0 40 49-88 84-124 (252)
250 TIGR01489 DKMTPPase-SF 2,3-dik 79.5 1.3 2.8E-05 30.7 1.7 14 32-45 3-16 (188)
251 TIGR01523 ATPase-IID_K-Na pota 79.3 3.7 8E-05 37.3 4.9 42 45-88 645-686 (1053)
252 COG0474 MgtA Cation transport 78.5 13 0.00027 33.4 7.9 55 44-101 545-601 (917)
253 PRK13762 tRNA-modifying enzyme 78.4 12 0.00027 29.3 7.1 26 48-73 144-169 (322)
254 COG2216 KdpB High-affinity K+ 78.3 5.3 0.00011 34.1 5.2 84 22-110 420-506 (681)
255 cd06592 GH31_glucosidase_KIAA1 77.8 6 0.00013 30.6 5.1 42 30-71 46-92 (303)
256 TIGR01657 P-ATPase-V P-type AT 77.8 4.5 9.9E-05 36.6 5.0 43 44-88 654-696 (1054)
257 COG0548 ArgB Acetylglutamate k 76.9 8.9 0.00019 29.6 5.8 58 30-90 2-59 (265)
258 TIGR01452 PGP_euk phosphoglyco 76.8 4.3 9.4E-05 30.7 4.1 26 47-73 144-169 (279)
259 COG1180 PflA Pyruvate-formate 76.6 4.5 9.8E-05 30.8 4.1 40 35-74 82-124 (260)
260 TIGR01494 ATPase_P-type ATPase 76.5 6.1 0.00013 32.4 5.1 57 29-87 326-386 (499)
261 PRK09456 ?-D-glucose-1-phospha 76.0 1.7 3.7E-05 31.0 1.6 15 31-45 1-15 (199)
262 KOG0207 Cation transport ATPas 75.3 6.6 0.00014 35.3 5.1 70 28-100 701-774 (951)
263 TIGR03278 methan_mark_10 putat 75.3 8.8 0.00019 31.3 5.6 70 36-106 73-147 (404)
264 cd05008 SIS_GlmS_GlmD_1 SIS (S 75.1 4.6 0.0001 26.4 3.4 27 48-74 59-85 (126)
265 COG2044 Predicted peroxiredoxi 74.0 7.9 0.00017 26.4 4.3 50 22-71 26-84 (120)
266 PRK11145 pflA pyruvate formate 73.0 3.8 8.1E-05 30.3 2.8 35 38-72 72-109 (246)
267 PRK02261 methylaspartate mutas 73.0 18 0.0004 24.8 6.1 60 46-110 66-134 (137)
268 KOG3085 Predicted hydrolase (H 72.6 3.9 8.4E-05 31.1 2.8 25 28-52 5-29 (237)
269 cd05014 SIS_Kpsf KpsF-like pro 72.4 5.7 0.00012 26.0 3.4 27 47-73 59-85 (128)
270 TIGR03365 Bsubt_queE 7-cyano-7 72.0 4.9 0.00011 30.1 3.2 37 38-74 74-112 (238)
271 cd06602 GH31_MGAM_SI_GAA This 71.8 8.9 0.00019 30.2 4.8 42 29-70 39-87 (339)
272 cd06603 GH31_GANC_GANAB_alpha 71.6 8.4 0.00018 30.2 4.6 42 29-70 39-85 (339)
273 TIGR03470 HpnH hopanoid biosyn 70.9 24 0.00052 27.4 7.0 28 48-75 86-113 (318)
274 COG4502 5'(3')-deoxyribonucleo 70.7 12 0.00026 26.7 4.7 43 29-72 49-93 (180)
275 COG3700 AphA Acid phosphatase 70.6 12 0.00025 27.8 4.8 40 51-90 119-160 (237)
276 cd06600 GH31_MGAM-like This fa 70.5 9.4 0.0002 29.7 4.7 42 29-70 39-85 (317)
277 TIGR01652 ATPase-Plipid phosph 70.2 6.2 0.00013 35.7 4.0 48 39-88 624-671 (1057)
278 TIGR03470 HpnH hopanoid biosyn 70.0 21 0.00045 27.8 6.5 69 19-88 114-193 (318)
279 PRK13361 molybdenum cofactor b 69.7 15 0.00032 28.6 5.6 66 15-88 44-116 (329)
280 TIGR02494 PFLE_PFLC glycyl-rad 67.8 12 0.00026 28.4 4.7 48 37-84 126-176 (295)
281 TIGR01459 HAD-SF-IIA-hyp4 HAD- 67.8 4.8 0.0001 29.7 2.4 25 48-73 140-164 (242)
282 cd06601 GH31_lyase_GLase GLase 67.5 15 0.00033 28.9 5.3 42 29-70 39-85 (332)
283 cd02072 Glm_B12_BD B12 binding 67.2 11 0.00024 25.9 3.9 55 48-107 64-124 (128)
284 cd07042 STAS_SulP_like_sulfate 67.1 16 0.00034 22.7 4.5 56 30-89 41-96 (107)
285 cd05710 SIS_1 A subgroup of th 67.0 9.1 0.0002 25.3 3.4 27 48-74 60-86 (120)
286 PRK08508 biotin synthase; Prov 66.9 55 0.0012 25.0 8.4 74 16-90 40-116 (279)
287 TIGR02493 PFLA pyruvate format 66.8 16 0.00035 26.6 5.0 46 39-84 68-118 (235)
288 TIGR01370 cysRS possible cyste 66.7 14 0.0003 29.2 4.9 53 20-73 152-215 (315)
289 TIGR02668 moaA_archaeal probab 66.5 16 0.00035 27.8 5.2 39 48-87 70-109 (302)
290 PRK10658 putative alpha-glucos 65.3 11 0.00025 32.5 4.5 43 29-71 298-347 (665)
291 TIGR03127 RuMP_HxlB 6-phospho 65.3 9.1 0.0002 26.8 3.4 27 48-74 85-111 (179)
292 PF02593 dTMP_synthase: Thymid 64.9 27 0.00058 26.2 5.9 63 51-116 65-135 (217)
293 TIGR01501 MthylAspMutase methy 63.2 23 0.00051 24.4 5.0 57 48-109 66-131 (134)
294 PLN02177 glycerol-3-phosphate 62.7 5.3 0.00011 33.4 1.9 17 29-45 21-37 (497)
295 KOG0541 Alkyl hydroperoxide re 62.4 30 0.00066 24.9 5.5 48 20-69 36-85 (171)
296 cd06589 GH31 The enzymes of gl 62.0 22 0.00047 26.8 5.1 43 29-71 39-88 (265)
297 COG1501 Alpha-glucosidases, fa 61.2 25 0.00055 31.1 5.9 59 29-87 295-360 (772)
298 COG0353 RecR Recombinational D 60.8 63 0.0014 24.0 7.0 85 4-88 71-166 (198)
299 cd06604 GH31_glucosidase_II_Ma 60.6 22 0.00048 27.8 5.0 42 29-70 39-85 (339)
300 COG0532 InfB Translation initi 60.2 27 0.00059 29.5 5.7 51 44-94 89-143 (509)
301 cd05006 SIS_GmhA Phosphoheptos 60.0 13 0.00028 26.1 3.3 27 47-73 113-139 (177)
302 TIGR01458 HAD-SF-IIA-hyp3 HAD- 60.0 8 0.00017 29.1 2.4 27 47-73 121-147 (257)
303 PRK15447 putative protease; Pr 59.5 75 0.0016 24.6 7.8 77 29-108 28-105 (301)
304 PF01380 SIS: SIS domain SIS d 59.3 15 0.00033 23.7 3.4 27 48-74 66-92 (131)
305 cd05017 SIS_PGI_PMI_1 The memb 59.3 13 0.00028 24.4 3.0 25 48-72 56-80 (119)
306 PF09587 PGA_cap: Bacterial ca 58.7 72 0.0016 23.6 7.5 69 18-88 27-107 (250)
307 cd06593 GH31_xylosidase_YicI Y 58.6 22 0.00049 27.2 4.7 41 30-70 40-87 (308)
308 TIGR00815 sulP high affinity s 58.4 16 0.00034 30.8 4.1 57 30-90 494-550 (563)
309 TIGR00441 gmhA phosphoheptose 58.4 14 0.00031 25.5 3.3 28 47-74 91-118 (154)
310 PRK13937 phosphoheptose isomer 58.2 14 0.00031 26.4 3.4 28 47-74 118-145 (188)
311 cd05013 SIS_RpiR RpiR-like pro 58.0 13 0.00028 24.1 2.9 25 49-73 74-98 (139)
312 cd06599 GH31_glycosidase_Aec37 57.8 49 0.0011 25.7 6.5 43 29-71 44-95 (317)
313 PF00710 Asparaginase: Asparag 57.4 32 0.00069 26.8 5.4 47 20-72 217-263 (313)
314 TIGR02666 moaA molybdenum cofa 57.3 33 0.00072 26.5 5.5 40 48-88 73-114 (334)
315 KOG0202 Ca2+ transporting ATPa 56.8 31 0.00067 31.1 5.6 44 45-90 583-626 (972)
316 TIGR00519 asnASE_I L-asparagin 56.8 36 0.00077 26.9 5.6 46 21-71 228-273 (336)
317 PF13394 Fer4_14: 4Fe-4S singl 56.8 1.4 3.1E-05 28.7 -2.0 26 49-74 65-92 (119)
318 PRK05301 pyrroloquinoline quin 56.8 56 0.0012 25.7 6.8 71 17-88 103-184 (378)
319 PRK00942 acetylglutamate kinas 56.5 44 0.00094 25.4 5.9 58 29-89 22-79 (283)
320 KOG1050 Trehalose-6-phosphate 56.0 21 0.00046 31.4 4.5 54 19-74 492-546 (732)
321 TIGR01917 gly_red_sel_B glycin 55.9 41 0.00089 27.8 5.9 79 10-89 281-367 (431)
322 PRK13125 trpA tryptophan synth 55.4 37 0.0008 25.3 5.3 48 37-84 102-151 (244)
323 cd00411 Asparaginase Asparagin 55.3 39 0.00084 26.5 5.6 45 22-71 227-271 (323)
324 PLN03190 aminophospholipid tra 54.8 23 0.0005 32.8 4.7 47 39-87 719-765 (1178)
325 cd05005 SIS_PHI Hexulose-6-pho 54.8 17 0.00038 25.5 3.3 27 48-74 88-114 (179)
326 smart00729 Elp3 Elongator prot 54.7 21 0.00045 24.5 3.6 52 37-88 52-112 (216)
327 TIGR00615 recR recombination p 54.0 87 0.0019 23.1 7.6 83 5-88 71-165 (195)
328 COG1433 Uncharacterized conser 53.3 41 0.00088 22.9 4.7 75 29-107 23-106 (121)
329 PRK04531 acetylglutamate kinas 53.1 34 0.00073 27.8 5.0 68 29-101 35-103 (398)
330 TIGR01290 nifB nitrogenase cof 52.9 38 0.00083 27.8 5.4 39 49-88 95-135 (442)
331 PF04055 Radical_SAM: Radical 52.4 9.3 0.0002 25.2 1.5 59 48-107 59-121 (166)
332 PF05822 UMPH-1: Pyrimidine 5' 52.3 20 0.00044 27.3 3.4 40 46-87 90-129 (246)
333 cd04795 SIS SIS domain. SIS (S 51.7 19 0.00041 21.5 2.7 22 48-69 60-81 (87)
334 CHL00202 argB acetylglutamate 50.9 69 0.0015 24.5 6.2 58 30-90 23-80 (284)
335 PRK00073 pgk phosphoglycerate 50.6 1.1E+02 0.0023 25.1 7.4 86 15-110 294-380 (389)
336 PRK09461 ansA cytoplasmic aspa 50.1 50 0.0011 26.1 5.5 48 21-71 226-273 (335)
337 TIGR01918 various_sel_PB selen 49.9 56 0.0012 27.0 5.8 80 10-89 281-367 (431)
338 PLN02499 glycerol-3-phosphate 49.7 12 0.00025 31.5 1.9 16 29-44 7-22 (498)
339 PRK13938 phosphoheptose isomer 48.9 24 0.00052 25.7 3.3 28 47-74 125-152 (196)
340 PLN02512 acetylglutamate kinas 48.7 67 0.0015 25.0 5.9 59 29-90 46-104 (309)
341 smart00870 Asparaginase Aspara 48.3 59 0.0013 25.4 5.6 46 22-72 229-274 (323)
342 PRK00414 gmhA phosphoheptose i 48.2 26 0.00057 25.2 3.4 28 47-74 123-150 (192)
343 PF00162 PGK: Phosphoglycerate 48.1 65 0.0014 26.2 5.9 81 16-107 300-382 (384)
344 TIGR02491 NrdG anaerobic ribon 48.1 30 0.00066 23.9 3.6 35 37-71 64-104 (154)
345 TIGR00520 asnASE_II L-asparagi 47.9 59 0.0013 26.0 5.6 39 29-71 262-300 (349)
346 PF13466 STAS_2: STAS domain 47.1 58 0.0013 19.3 4.4 62 21-88 19-80 (80)
347 cd04906 ACT_ThrD-I_1 First of 46.9 39 0.00085 20.9 3.7 21 51-71 55-75 (85)
348 PRK11096 ansB L-asparaginase I 46.8 59 0.0013 25.9 5.4 47 21-72 249-295 (347)
349 cd04724 Tryptophan_synthase_al 46.5 63 0.0014 24.1 5.3 46 37-83 105-150 (242)
350 TIGR03822 AblA_like_2 lysine-2 46.3 79 0.0017 24.7 6.0 57 32-90 199-262 (321)
351 cd06287 PBP1_LacI_like_8 Ligan 46.0 60 0.0013 23.9 5.1 67 21-88 72-150 (269)
352 cd01037 Restriction_endonuclea 45.9 42 0.00091 18.9 3.6 40 30-69 37-79 (80)
353 PLN02591 tryptophan synthase 45.8 56 0.0012 24.8 5.0 32 37-69 107-138 (250)
354 CHL00200 trpA tryptophan synth 45.5 59 0.0013 24.9 5.1 33 37-70 120-152 (263)
355 cd04246 AAK_AK-DapG-like AAK_A 45.3 49 0.0011 24.4 4.6 38 34-71 3-40 (239)
356 cd02071 MM_CoA_mut_B12_BD meth 45.2 75 0.0016 20.9 5.1 57 47-107 63-121 (122)
357 cd06594 GH31_glucosidase_YihQ 45.2 41 0.00089 26.2 4.3 28 44-71 66-93 (317)
358 PRK00164 moaA molybdenum cofac 44.7 61 0.0013 25.0 5.2 39 48-87 79-119 (331)
359 PRK13745 anaerobic sulfatase-m 44.7 1.1E+02 0.0025 24.5 6.9 79 6-88 105-196 (412)
360 PRK11382 frlB fructoselysine-6 44.6 29 0.00063 27.2 3.4 27 48-74 105-131 (340)
361 PLN02418 delta-1-pyrroline-5-c 44.6 45 0.00097 29.2 4.8 48 22-71 9-62 (718)
362 TIGR03190 benz_CoA_bzdN benzoy 44.3 1.2E+02 0.0026 24.2 6.9 13 56-68 337-349 (377)
363 PRK08883 ribulose-phosphate 3- 43.6 1.3E+02 0.0029 22.2 8.1 50 29-86 81-130 (220)
364 PLN02282 phosphoglycerate kina 43.4 1.4E+02 0.0031 24.5 7.2 85 15-115 302-397 (401)
365 PF08210 APOBEC_N: APOBEC-like 43.4 52 0.0011 23.9 4.3 69 9-85 81-157 (188)
366 PLN02763 hydrolase, hydrolyzin 43.3 51 0.0011 30.1 5.0 42 29-70 216-262 (978)
367 PRK13936 phosphoheptose isomer 43.2 35 0.00075 24.6 3.4 26 48-73 124-149 (197)
368 PRK11557 putative DNA-binding 43.2 30 0.00064 25.9 3.1 27 48-74 188-214 (278)
369 cd06597 GH31_transferase_CtsY 43.1 66 0.0014 25.4 5.2 24 47-70 83-106 (340)
370 COG0535 Predicted Fe-S oxidore 42.9 1.3E+02 0.0029 22.6 6.7 81 4-87 96-187 (347)
371 PF01113 DapB_N: Dihydrodipico 42.8 55 0.0012 21.7 4.1 61 11-84 51-111 (124)
372 TIGR02153 gatD_arch glutamyl-t 42.1 77 0.0017 25.9 5.5 45 22-71 293-337 (404)
373 TIGR01890 N-Ac-Glu-synth amino 42.1 78 0.0017 25.6 5.6 58 29-90 16-73 (429)
374 COG0528 PyrH Uridylate kinase 42.0 47 0.001 25.3 4.0 47 28-74 3-56 (238)
375 COG1911 RPL30 Ribosomal protei 42.0 44 0.00095 22.1 3.3 46 43-90 16-65 (100)
376 PRK15482 transcriptional regul 41.7 35 0.00075 25.8 3.3 28 47-74 194-221 (285)
377 TIGR02493 PFLA pyruvate format 41.7 68 0.0015 23.2 4.8 79 6-87 98-188 (235)
378 TIGR02109 PQQ_syn_pqqE coenzym 41.7 1.5E+02 0.0033 23.0 7.1 70 18-88 95-175 (358)
379 PRK08745 ribulose-phosphate 3- 41.7 87 0.0019 23.3 5.4 51 28-86 84-134 (223)
380 PRK11543 gutQ D-arabinose 5-ph 41.6 36 0.00077 26.0 3.4 27 48-74 102-128 (321)
381 PRK10886 DnaA initiator-associ 41.5 37 0.00081 24.8 3.3 28 47-74 121-148 (196)
382 PF00072 Response_reg: Respons 41.5 82 0.0018 19.2 7.1 63 19-90 33-97 (112)
383 KOG1145 Mitochondrial translat 41.2 74 0.0016 27.6 5.3 47 43-89 234-284 (683)
384 PF04007 DUF354: Protein of un 40.9 51 0.0011 26.1 4.2 36 50-88 15-50 (335)
385 PF03537 Glyco_hydro_114: Glyc 40.9 61 0.0013 19.8 3.8 33 29-71 26-59 (74)
386 PTZ00106 60S ribosomal protein 40.8 49 0.0011 21.9 3.6 59 43-103 22-82 (108)
387 PRK05476 S-adenosyl-L-homocyst 40.7 54 0.0012 27.0 4.4 51 41-91 51-102 (425)
388 PF04392 ABC_sub_bind: ABC tra 40.7 95 0.0021 23.4 5.6 61 53-115 19-84 (294)
389 PF14597 Lactamase_B_5: Metall 40.6 40 0.00088 24.9 3.3 41 47-88 39-80 (199)
390 PRK13745 anaerobic sulfatase-m 40.5 60 0.0013 26.1 4.7 28 60-87 99-126 (412)
391 cd00153 RalGDS_RA Ubiquitin do 40.5 48 0.001 21.4 3.3 29 62-90 17-45 (87)
392 cd04261 AAK_AKii-LysC-BS AAK_A 40.1 66 0.0014 23.7 4.6 39 33-71 2-40 (239)
393 PF11181 YflT: Heat induced st 40.0 53 0.0012 21.1 3.6 23 49-71 10-35 (103)
394 TIGR00705 SppA_67K signal pept 39.7 52 0.0011 28.1 4.4 51 20-70 84-134 (584)
395 TIGR00262 trpA tryptophan synt 39.7 86 0.0019 23.7 5.2 47 37-84 116-162 (256)
396 TIGR00250 RNAse_H_YqgF RNAse H 39.7 1.2E+02 0.0026 20.5 6.8 79 29-107 9-104 (130)
397 PRK02947 hypothetical protein; 39.6 34 0.00073 25.7 2.9 26 47-72 118-143 (246)
398 PRK04183 glutamyl-tRNA(Gln) am 39.4 89 0.0019 25.7 5.5 45 22-71 306-350 (419)
399 PRK01424 S-adenosylmethionine: 39.4 51 0.0011 26.7 4.0 42 29-70 186-227 (366)
400 PF00696 AA_kinase: Amino acid 39.4 25 0.00055 25.5 2.2 55 32-90 2-58 (242)
401 KOG2599 Pyridoxal/pyridoxine/p 39.4 28 0.0006 27.4 2.4 25 48-72 166-190 (308)
402 PF01591 6PF2K: 6-phosphofruct 39.3 44 0.00095 25.0 3.5 49 51-100 84-135 (222)
403 PRK13844 recombination protein 39.2 1.6E+02 0.0034 21.8 7.6 67 5-72 75-149 (200)
404 KOG1605 TFIIF-interacting CTD 39.2 25 0.00055 27.1 2.2 18 29-46 88-105 (262)
405 PRK13602 putative ribosomal pr 39.2 89 0.0019 19.5 4.4 57 44-103 9-67 (82)
406 PF13580 SIS_2: SIS domain; PD 39.1 28 0.00061 23.5 2.2 24 47-70 115-138 (138)
407 PF07075 DUF1343: Protein of u 39.0 39 0.00086 27.2 3.4 48 20-69 71-118 (365)
408 TIGR00393 kpsF KpsF/GutQ famil 38.9 42 0.00091 24.8 3.3 26 48-73 60-85 (268)
409 cd00851 MTH1175 This uncharact 38.9 89 0.0019 19.3 4.5 59 29-90 21-88 (103)
410 PF03709 OKR_DC_1_N: Orn/Lys/A 38.8 21 0.00045 23.6 1.5 37 29-71 38-76 (115)
411 cd01410 SIRT7 SIRT7: Eukaryoti 38.7 26 0.00056 25.7 2.1 62 3-71 9-71 (206)
412 cd01994 Alpha_ANH_like_IV This 38.6 1.4E+02 0.003 21.5 6.0 70 17-90 46-118 (194)
413 cd00318 Phosphoglycerate_kinas 38.4 2.2E+02 0.0048 23.3 8.2 89 16-115 300-394 (397)
414 cd05007 SIS_Etherase N-acetylm 38.0 45 0.00098 25.2 3.4 28 47-74 130-157 (257)
415 PRK12314 gamma-glutamyl kinase 38.0 49 0.0011 25.1 3.6 43 29-71 8-56 (266)
416 cd01335 Radical_SAM Radical SA 37.9 1.2E+02 0.0026 20.2 8.2 40 49-88 59-100 (204)
417 TIGR00761 argB acetylglutamate 37.9 73 0.0016 23.3 4.5 52 33-89 2-53 (231)
418 PRK11145 pflA pyruvate formate 37.9 1.1E+02 0.0023 22.5 5.4 48 18-67 114-166 (246)
419 PRK06256 biotin synthase; Vali 37.8 1E+02 0.0022 23.8 5.5 42 48-90 125-166 (336)
420 PLN02825 amino-acid N-acetyltr 37.8 1.2E+02 0.0025 25.7 6.1 58 29-90 16-73 (515)
421 PF09547 Spore_IV_A: Stage IV 37.6 74 0.0016 26.7 4.7 61 31-91 147-214 (492)
422 PF14528 LAGLIDADG_3: LAGLIDAD 37.3 5.7 0.00012 23.9 -1.3 26 64-89 23-48 (77)
423 cd03132 GATase1_catalase Type 37.3 65 0.0014 21.4 3.9 43 48-99 81-124 (142)
424 PF08774 VRR_NUC: VRR-NUC doma 37.3 57 0.0012 20.6 3.4 27 44-70 72-98 (100)
425 TIGR00936 ahcY adenosylhomocys 37.3 55 0.0012 26.7 4.0 49 42-90 36-85 (406)
426 PRK15108 biotin synthase; Prov 37.2 2.1E+02 0.0045 22.6 7.6 40 47-88 109-148 (345)
427 TIGR00172 maf MAF protein. Thi 37.1 23 0.00049 25.7 1.6 22 63-88 3-24 (183)
428 TIGR02329 propionate_PrpR prop 37.1 1.5E+02 0.0033 24.9 6.7 48 48-105 131-178 (526)
429 PRK11337 DNA-binding transcrip 37.0 46 0.001 25.1 3.4 27 48-74 200-226 (292)
430 PF12965 DUF3854: Domain of un 36.7 57 0.0012 22.2 3.5 65 20-86 60-126 (130)
431 PRK14368 Maf-like protein; Pro 36.6 23 0.00049 25.9 1.5 23 62-88 4-26 (193)
432 PRK10892 D-arabinose 5-phospha 36.6 46 0.001 25.6 3.4 27 48-74 107-133 (326)
433 PF11576 DUF3236: Protein of u 36.5 29 0.00063 24.6 2.0 36 54-89 27-62 (154)
434 KOG0206 P-type ATPase [General 36.5 32 0.0007 31.9 2.7 44 42-87 647-690 (1151)
435 PRK01441 Maf-like protein; Rev 36.4 24 0.00053 26.0 1.7 22 63-88 5-26 (207)
436 PRK13402 gamma-glutamyl kinase 36.4 52 0.0011 26.4 3.7 43 29-71 4-52 (368)
437 PLN02621 nicotinamidase 36.3 56 0.0012 23.4 3.6 19 54-72 144-162 (197)
438 PF02635 DrsE: DsrE/DsrF-like 36.3 79 0.0017 19.8 4.0 39 32-70 38-83 (122)
439 TIGR00612 ispG_gcpE 1-hydroxy- 36.3 96 0.0021 25.0 5.1 62 50-116 109-170 (346)
440 PRK13111 trpA tryptophan synth 36.1 96 0.0021 23.6 5.0 35 37-72 118-153 (258)
441 smart00540 LEM in nuclear memb 36.0 28 0.00061 19.5 1.5 31 52-84 9-39 (44)
442 cd04250 AAK_NAGK-C AAK_NAGK-C: 36.0 89 0.0019 23.7 4.8 57 30-89 14-70 (279)
443 COG0036 Rpe Pentose-5-phosphat 35.8 1.9E+02 0.0041 21.8 7.7 41 46-86 93-133 (220)
444 PF02142 MGS: MGS-like domain 35.5 1.1E+02 0.0024 19.1 4.6 32 50-88 1-32 (95)
445 PRK01018 50S ribosomal protein 35.5 1.1E+02 0.0023 19.8 4.4 59 44-104 14-74 (99)
446 PF03332 PMM: Eukaryotic phosp 35.4 48 0.0011 24.9 3.1 29 51-82 1-29 (220)
447 PRK14363 Maf-like protein; Pro 35.3 22 0.00048 26.3 1.3 22 63-88 1-22 (204)
448 PRK00994 F420-dependent methyl 35.1 86 0.0019 24.2 4.4 46 40-87 64-110 (277)
449 PRK06683 hypothetical protein; 34.9 94 0.002 19.4 4.0 57 44-103 9-67 (82)
450 cd00401 AdoHcyase S-adenosyl-L 34.8 65 0.0014 26.4 4.0 48 44-91 42-90 (413)
451 cd04904 ACT_AAAH ACT domain of 34.7 56 0.0012 19.6 2.9 27 32-65 44-70 (74)
452 COG2344 AT-rich DNA-binding pr 34.7 1.3E+02 0.0028 22.5 5.2 56 33-88 114-172 (211)
453 PF12261 T_hemolysin: Thermost 34.7 77 0.0017 23.0 4.0 64 20-89 69-139 (179)
454 PRK08005 epimerase; Validated 34.6 1.9E+02 0.0041 21.4 7.6 51 28-86 80-130 (210)
455 COG1126 GlnQ ABC-type polar am 34.5 56 0.0012 24.9 3.4 42 28-70 153-194 (240)
456 PLN00094 aconitate hydratase 2 34.4 1.1E+02 0.0023 28.0 5.4 41 29-69 234-299 (938)
457 TIGR00274 N-acetylmuramic acid 34.3 54 0.0012 25.4 3.4 28 47-74 138-165 (291)
458 COG1419 FlhF Flagellar GTP-bin 34.3 80 0.0017 26.0 4.4 51 19-73 326-376 (407)
459 smart00851 MGS MGS-like domain 34.3 98 0.0021 19.1 4.1 17 52-69 3-19 (90)
460 PRK12353 putative amino acid k 34.2 72 0.0016 25.0 4.1 41 31-71 3-51 (314)
461 KOG1838 Alpha/beta hydrolase [ 34.2 38 0.00082 27.8 2.6 56 49-116 141-201 (409)
462 PRK05441 murQ N-acetylmuramic 34.1 53 0.0011 25.5 3.3 28 47-74 143-170 (299)
463 PF08353 DUF1727: Domain of un 34.1 97 0.0021 20.6 4.2 82 29-116 20-105 (113)
464 TIGR02494 PFLE_PFLC glycyl-rad 33.8 1.2E+02 0.0026 22.9 5.2 53 14-69 163-221 (295)
465 TIGR03191 benz_CoA_bzdO benzoy 33.4 2.2E+02 0.0047 23.3 6.9 51 15-72 347-402 (430)
466 PRK02141 Maf-like protein; Rev 33.3 26 0.00057 25.9 1.4 23 62-88 8-30 (207)
467 PF02579 Nitro_FeMo-Co: Dinitr 32.8 1.1E+02 0.0024 18.6 4.1 74 29-106 12-93 (94)
468 PRK05625 5-amino-6-(5-phosphor 32.4 1.9E+02 0.0042 20.8 7.7 55 52-109 106-160 (217)
469 COG2390 DeoR Transcriptional r 32.4 1.1E+02 0.0024 24.2 4.9 71 30-108 247-319 (321)
470 cd00429 RPE Ribulose-5-phospha 32.3 1.5E+02 0.0031 20.9 5.2 34 37-71 81-114 (211)
471 COG0126 Pgk 3-phosphoglycerate 32.2 2.9E+02 0.0062 22.7 7.7 85 17-110 298-383 (395)
472 PF05240 APOBEC_C: APOBEC-like 32.2 49 0.0011 19.4 2.2 21 49-69 2-22 (55)
473 TIGR00640 acid_CoA_mut_C methy 32.0 1.6E+02 0.0036 19.9 5.4 41 48-90 67-109 (132)
474 PRK00234 Maf-like protein; Rev 31.7 27 0.00059 25.4 1.3 21 64-88 3-23 (192)
475 PF03033 Glyco_transf_28: Glyc 31.7 79 0.0017 20.5 3.5 32 52-88 16-47 (139)
476 COG4019 Uncharacterized protei 31.5 72 0.0016 22.3 3.2 26 63-88 37-62 (156)
477 COG0809 QueA S-adenosylmethion 31.5 92 0.002 25.1 4.2 40 30-69 167-206 (348)
478 COG1225 Bcp Peroxiredoxin [Pos 31.4 76 0.0016 22.6 3.5 32 30-61 121-155 (157)
479 PRK14086 dnaA chromosomal repl 31.4 91 0.002 27.1 4.5 44 29-72 377-420 (617)
480 TIGR00113 queA S-adenosylmethi 31.3 72 0.0016 25.6 3.7 41 29-69 165-205 (344)
481 PRK06635 aspartate kinase; Rev 31.3 1.1E+02 0.0025 24.3 4.9 40 32-71 3-42 (404)
482 COG5663 Uncharacterized conser 31.3 33 0.00073 25.1 1.6 19 32-50 8-26 (194)
483 TIGR02260 benz_CoA_red_B benzo 31.3 2.7E+02 0.006 22.6 7.1 23 46-68 363-387 (413)
484 PRK00358 pyrH uridylate kinase 31.2 65 0.0014 23.6 3.3 39 33-71 3-48 (231)
485 KOG2469 IMP-GMP specific 5'-nu 31.2 55 0.0012 27.0 3.0 38 25-64 24-64 (424)
486 COG1737 RpiR Transcriptional r 31.0 59 0.0013 24.8 3.1 27 48-74 190-216 (281)
487 PF00834 Ribul_P_3_epim: Ribul 30.9 1.2E+02 0.0026 22.2 4.6 47 28-82 79-125 (201)
488 COG0252 AnsB L-asparaginase/ar 30.7 1.6E+02 0.0035 23.6 5.6 41 28-72 253-293 (351)
489 KOG4494 Cell surface ATP dipho 30.7 28 0.0006 27.6 1.2 38 6-45 298-337 (352)
490 COG0424 Maf Nucleotide-binding 30.7 30 0.00065 25.5 1.3 22 63-88 3-24 (193)
491 PF06506 PrpR_N: Propionate ca 30.6 1.1E+02 0.0025 21.4 4.4 50 48-106 111-160 (176)
492 cd01781 AF6_RA_repeat2 Ubiquit 30.6 67 0.0015 21.2 2.9 31 60-90 14-44 (100)
493 PRK06395 phosphoribosylamine-- 30.5 3E+02 0.0065 22.4 7.8 80 18-106 54-138 (435)
494 PF06117 DUF957: Enterobacteri 30.5 25 0.00054 21.4 0.8 30 30-59 24-53 (65)
495 PRK13758 anaerobic sulfatase-m 30.5 2.3E+02 0.0049 22.1 6.4 69 19-88 106-187 (370)
496 PRK00366 ispG 4-hydroxy-3-meth 30.2 1.4E+02 0.0031 24.2 5.1 63 49-116 117-179 (360)
497 PF04908 SH3BGR: SH3-binding, 30.2 71 0.0015 20.9 2.9 47 62-110 2-53 (99)
498 TIGR02263 benz_CoA_red_C benzo 30.1 1.3E+02 0.0027 24.1 5.0 13 56-68 345-357 (380)
499 PRK00078 Maf-like protein; Rev 30.1 31 0.00067 25.1 1.3 22 63-88 1-22 (192)
500 PRK04425 Maf-like protein; Rev 29.8 33 0.00072 25.1 1.5 22 63-88 5-26 (196)
No 1
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.84 E-value=9.9e-21 Score=125.39 Aligned_cols=83 Identities=35% Similarity=0.503 Sum_probs=73.6
Q ss_pred EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhccC
Q 033480 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLII 111 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~~ 111 (118)
++||+||||+++..++||+.|+|++|+++|++++++||++ ++.+++.++|+.+|++... +.|+||..++++||++..+
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTT
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999999998 6668899999999999885 9999999999999999888
Q ss_pred CCccc
Q 033480 112 ASSVI 116 (118)
Q Consensus 112 ~~~v~ 116 (118)
+++||
T Consensus 80 ~~~v~ 84 (101)
T PF13344_consen 80 GKKVY 84 (101)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 88876
No 2
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.79 E-value=5e-19 Score=135.12 Aligned_cols=91 Identities=29% Similarity=0.483 Sum_probs=82.9
Q ss_pred HHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHH
Q 033480 23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGE 100 (118)
Q Consensus 23 ~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~ 100 (118)
++.. +|++++||+||||+++..++||+.|+|++|+++|++++++||++ ++...+.++|+. .+++.. ++.|+||+.
T Consensus 3 ~~~~--~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~-~~~i~TS~~ 79 (269)
T COG0647 3 DVMD--KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT-PDDIVTSGD 79 (269)
T ss_pred chhh--hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC-HHHeecHHH
Confidence 3455 89999999999999999999999999999999999999999998 556668999999 777777 599999999
Q ss_pred HHHHHHHhccCCCccc
Q 033480 101 LTHQYLLRLIIASSVI 116 (118)
Q Consensus 101 v~~~~l~~~~~~~~v~ 116 (118)
++++|+++..++++||
T Consensus 80 at~~~l~~~~~~~kv~ 95 (269)
T COG0647 80 ATADYLAKQKPGKKVY 95 (269)
T ss_pred HHHHHHHhhCCCCEEE
Confidence 9999999999988887
No 3
>PLN02645 phosphoglycolate phosphatase
Probab=99.71 E-value=9e-17 Score=124.42 Aligned_cols=99 Identities=25% Similarity=0.391 Sum_probs=88.0
Q ss_pred ccchhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCC
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFA 93 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd 93 (118)
-++...+.+++. +++.++||+||||+++..++||+.|+|++|+++|++++++||++ +....+.++|+.+|+... ++
T Consensus 15 ~~~~~~~~~~~~--~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~-~~ 91 (311)
T PLN02645 15 LLTLENADELID--SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT-EE 91 (311)
T ss_pred cCCHHHHHHHHH--hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC-hh
Confidence 567789999999 99999999999999999999999999999999999999999987 556777889999999988 69
Q ss_pred ceeehHHHHHHHHHhccC--CCccc
Q 033480 94 GAITSGELTHQYLLRLII--ASSVI 116 (118)
Q Consensus 94 ~iits~~v~~~~l~~~~~--~~~v~ 116 (118)
.|++|..+.+.|+++... +++||
T Consensus 92 ~I~ts~~~~~~~l~~~~~~~~~~V~ 116 (311)
T PLN02645 92 EIFSSSFAAAAYLKSINFPKDKKVY 116 (311)
T ss_pred hEeehHHHHHHHHHhhccCCCCEEE
Confidence 999999999999998642 34454
No 4
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.69 E-value=1.9e-16 Score=119.13 Aligned_cols=86 Identities=22% Similarity=0.372 Sum_probs=79.0
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHh
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~ 108 (118)
+++++||+||||+++.+++|++.++|++|+++|++++++||++ |+...+.++|+.+|++.. .|.|++++.+.++||++
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~-~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT-LETVFTASMATADYMND 79 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC-hhhEeeHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999976 778888999999999987 59999999999999999
Q ss_pred ccCCCccc
Q 033480 109 LIIASSVI 116 (118)
Q Consensus 109 ~~~~~~v~ 116 (118)
..+.++|+
T Consensus 80 ~~~~~~v~ 87 (249)
T TIGR01457 80 LKLEKTVY 87 (249)
T ss_pred cCCCCEEE
Confidence 87766664
No 5
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.67 E-value=3.8e-16 Score=116.62 Aligned_cols=84 Identities=33% Similarity=0.563 Sum_probs=76.2
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC-cCCCceeehHH
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSGE 100 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~-~~fd~iits~~ 100 (118)
+++++ +++.++||+|||++++..++||+.|+|++|+++|++++|+||++++...+.+.|+.+|++. + |+.|+++++
T Consensus 2 ~~~~~--~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~-~~~Ii~s~~ 78 (242)
T TIGR01459 2 FDLIN--DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADL-PEMIISSGE 78 (242)
T ss_pred hhhhh--cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccc-cceEEccHH
Confidence 56888 9999999999999999999999999999999999999999998876655668899999997 7 799999999
Q ss_pred HHHHHHHh
Q 033480 101 LTHQYLLR 108 (118)
Q Consensus 101 v~~~~l~~ 108 (118)
+..+++.+
T Consensus 79 ~~~~~l~~ 86 (242)
T TIGR01459 79 IAVQMILE 86 (242)
T ss_pred HHHHHHHh
Confidence 98888764
No 6
>PRK10444 UMP phosphatase; Provisional
Probab=99.67 E-value=3.8e-16 Score=117.86 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=76.5
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHh
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~ 108 (118)
++.++||+||||+++..++||+.++|++|+++|++++++||++ +....+.++|+.+|++... +.++||+.++++||++
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFLRR 79 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-hhEecHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999998 4567888999999998774 9999999999999998
Q ss_pred ccCCCccc
Q 033480 109 LIIASSVI 116 (118)
Q Consensus 109 ~~~~~~v~ 116 (118)
. ++++||
T Consensus 80 ~-~~~~v~ 86 (248)
T PRK10444 80 Q-EGKKAY 86 (248)
T ss_pred C-CCCEEE
Confidence 6 455554
No 7
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.66 E-value=7.2e-16 Score=117.46 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=77.6
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~ 107 (118)
+++.++||+||||+++.+++||+.++|++|+++|++++++||++ ++...+..+|+.+|++... +.+++|+.++++||+
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA-EQLFSSALCAARLLR 79 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEecHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999987 5566777899999998884 999999999999999
Q ss_pred hc-cCCCccc
Q 033480 108 RL-IIASSVI 116 (118)
Q Consensus 108 ~~-~~~~~v~ 116 (118)
+. .++++||
T Consensus 80 ~~~~~~~~v~ 89 (279)
T TIGR01452 80 QPPDAPKAVY 89 (279)
T ss_pred hhCcCCCEEE
Confidence 94 5566665
No 8
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.61 E-value=3.2e-15 Score=113.02 Aligned_cols=80 Identities=26% Similarity=0.349 Sum_probs=73.0
Q ss_pred CcEEEEeccCcccCCCc----cCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 30 FKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~----~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
++.++||+||||+++.. ++|++.++|++|+++|++++++||++ +....+.++|+.+|++.. .+.|+||+.++++
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~-~~~i~ts~~~~~~ 79 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDIS-EDEVFTPAPAARQ 79 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCC-HHHeEcHHHHHHH
Confidence 47899999999999887 99999999999999999999999998 555678899999999987 4999999999999
Q ss_pred HHHhcc
Q 033480 105 YLLRLI 110 (118)
Q Consensus 105 ~l~~~~ 110 (118)
||++..
T Consensus 80 ~l~~~~ 85 (257)
T TIGR01458 80 LLEEKQ 85 (257)
T ss_pred HHHhcC
Confidence 999864
No 9
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=5.3e-15 Score=113.76 Aligned_cols=96 Identities=25% Similarity=0.465 Sum_probs=87.6
Q ss_pred hhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCC-CcCCCce
Q 033480 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD-PSLFAGA 95 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~-~~~fd~i 95 (118)
.+..++++. .++.|+||.|||||.+..++||+.|+++.|++.|..+.++||++ ++++++.++.+.+|+. ... +.|
T Consensus 12 ~~~~~e~l~--~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e-~~i 88 (306)
T KOG2882|consen 12 SEEARELLD--SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKE-ENI 88 (306)
T ss_pred HHHHHHHHh--hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCc-ccc
Confidence 367889999 99999999999999999999999999999999999999999998 6678888999999998 664 899
Q ss_pred eehHHHHHHHHHhcc-CCCccc
Q 033480 96 ITSGELTHQYLLRLI-IASSVI 116 (118)
Q Consensus 96 its~~v~~~~l~~~~-~~~~v~ 116 (118)
+++.-+.+.||++.. .+++||
T Consensus 89 ~ssa~~~a~ylk~~~~~~k~Vy 110 (306)
T KOG2882|consen 89 FSSAYAIADYLKKRKPFGKKVY 110 (306)
T ss_pred cChHHHHHHHHHHhCcCCCeEE
Confidence 999999999998887 667776
No 10
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.58 E-value=7.7e-15 Score=109.57 Aligned_cols=83 Identities=39% Similarity=0.517 Sum_probs=76.0
Q ss_pred EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHHHHHHHHHhcc
Q 033480 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYLLRLI 110 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~v~~~~l~~~~ 110 (118)
++||+||||+++..++|++.++|+.++++|+++.++||++ ++...+.++|.. +|++.. ++.+++|+.++++|+++.+
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~-~~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVS-PDQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCC-HHHeeeHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999998 777888899988 899887 5999999999999999877
Q ss_pred CCCccc
Q 033480 111 IASSVI 116 (118)
Q Consensus 111 ~~~~v~ 116 (118)
++++||
T Consensus 80 ~~~~v~ 85 (236)
T TIGR01460 80 EGEKVY 85 (236)
T ss_pred CCCEEE
Confidence 777665
No 11
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.29 E-value=4e-12 Score=98.20 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=64.9
Q ss_pred CCcEEEEeccCcccCCCcc----CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~----~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
..+.++||+||||+++.+. -||+.|+|++|+++|++++|+||+++.. +...|+.+|+..+ |+.|++++++.+.
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~--v~~~L~~lGLd~Y-FdvIIs~Gdv~~~ 201 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH--VVESMRKVKLDRY-FDIIISGGHKAEE 201 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHcCCCcc-cCEEEECCccccC
Confidence 6889999999999998764 4999999999999999999999987643 5689999999998 7999999998554
Q ss_pred H
Q 033480 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
+
T Consensus 202 k 202 (301)
T TIGR01684 202 Y 202 (301)
T ss_pred C
Confidence 3
No 12
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.28 E-value=8.8e-12 Score=97.03 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=67.4
Q ss_pred EEEEeccCcccCCCccCccHHHHHHHHHHC----CCcEEEEeCCC-CChHHHHHHH-HhCCCCCcCCCceeehHHHHHHH
Q 033480 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSS-RRASTTIDKL-KSLGFDPSLFAGAITSGELTHQY 105 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~----Gi~v~I~TN~~-r~~~~~~~~L-~~~gi~~~~fd~iits~~v~~~~ 105 (118)
+++||+||||+++..++||+.|+++.|+.+ |+++.++||++ ++...+.+.| +.+|++... +.++++..++..|
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~-~~i~~s~~~~~~l 80 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSP-LQVIQSHSPYKSL 80 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCH-HHHHhhhHHHHHH
Confidence 689999999999999999999999999998 99999999987 5556667777 889998874 8999999888888
Q ss_pred HHhc
Q 033480 106 LLRL 109 (118)
Q Consensus 106 l~~~ 109 (118)
+++.
T Consensus 81 l~~~ 84 (321)
T TIGR01456 81 VNKY 84 (321)
T ss_pred HHHc
Confidence 7543
No 13
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.26 E-value=2.4e-11 Score=90.07 Aligned_cols=84 Identities=31% Similarity=0.404 Sum_probs=77.2
Q ss_pred cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l 106 (118)
+.++++++|+-|||+.+..++||+.|+++.|+.++.++-++||.+ .+...+.++|+++|++... +.|+||..++++|+
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e-eei~tsl~aa~~~~ 83 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE-EEIFTSLPAARQYL 83 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH-HHhcCccHHHHHHH
Confidence 478999999999999999999999999999999999999999987 4557788999999999985 89999999999999
Q ss_pred HhccCC
Q 033480 107 LRLIIA 112 (118)
Q Consensus 107 ~~~~~~ 112 (118)
+++...
T Consensus 84 ~~~~lr 89 (262)
T KOG3040|consen 84 EENQLR 89 (262)
T ss_pred HhcCCC
Confidence 998654
No 14
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.17 E-value=4.2e-11 Score=92.64 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=64.9
Q ss_pred CCcEEEEeccCcccCCCcc----CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~----~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
..+.++||+||||...... .|++.++|++|+++|++++|+||+++. .+...|+.+|+..+ |+.++++++...+
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re--~v~~~Le~lgL~~y-FDvII~~g~i~~k 203 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNRE--HVVHSLKETKLEGY-FDIIICGGRKAGE 203 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChH--HHHHHHHHcCCCcc-ccEEEECCCcccc
Confidence 5789999999999988664 599999999999999999999998664 35789999999998 7999999988776
Q ss_pred H
Q 033480 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
.
T Consensus 204 ~ 204 (303)
T PHA03398 204 Y 204 (303)
T ss_pred c
Confidence 5
No 15
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.10 E-value=8.6e-11 Score=80.37 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=53.3
Q ss_pred cEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC-------CCCc
Q 033480 31 KAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-------FDPS 90 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g-------i~~~ 90 (118)
|.+++|+||||+.+. .++||+.++|++|+++|++++++||++.. ......++.++ +..+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~-~~~~~~l~~~~~~~~i~~l~~~ 79 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDP-HVAYELLKIFEDFGIIFPLAEY 79 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCH-HHHHHHHHhccccccchhhHhh
Confidence 578999999999872 15899999999999999999999998322 23446667777 7777
Q ss_pred CCCceeehH
Q 033480 91 LFAGAITSG 99 (118)
Q Consensus 91 ~fd~iits~ 99 (118)
|+.+++++
T Consensus 80 -f~~~~~~~ 87 (128)
T TIGR01681 80 -FDPLTIGY 87 (128)
T ss_pred -hhhhhhcC
Confidence 68888773
No 16
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.08 E-value=4.2e-10 Score=80.28 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=53.9
Q ss_pred hcCCcEEEEeccCcccCCCc-------------cCccHHHHHHHHHHCCCcEEEEeCCCCCh----------HHHHHHHH
Q 033480 27 TRRFKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRA----------STTIDKLK 83 (118)
Q Consensus 27 ~~~~~~~~~D~DGtL~~~~~-------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~----------~~~~~~L~ 83 (118)
+|..+.++||+||||+.... ++||+.++|++|+++|++++|+||++... ..+...|+
T Consensus 10 ~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~ 89 (166)
T TIGR01664 10 KPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLE 89 (166)
T ss_pred CCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHH
Confidence 35789999999999987432 46999999999999999999999986420 13457789
Q ss_pred hCCCCCcCCCceeehH
Q 033480 84 SLGFDPSLFAGAITSG 99 (118)
Q Consensus 84 ~~gi~~~~fd~iits~ 99 (118)
.+|+.. +.+++++
T Consensus 90 ~~gl~~---~~ii~~~ 102 (166)
T TIGR01664 90 KLKVPI---QVLAATH 102 (166)
T ss_pred HcCCCE---EEEEecC
Confidence 999853 3455544
No 17
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.06 E-value=4.8e-10 Score=73.89 Aligned_cols=68 Identities=35% Similarity=0.526 Sum_probs=57.1
Q ss_pred EEEEeccCcccCCC---------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480 32 AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (118)
Q Consensus 32 ~~~~D~DGtL~~~~---------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~ 102 (118)
.++||+||||+... .++|++.++|+.|+++|++++++||+.+ ..+...++.+|+..+ |+.++++....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~~~ 77 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSR--REVLELLEELGLDDY-FDPVITSNGAA 77 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchH--HHHHHHHHHcCCchh-hhheeccchhh
Confidence 37999999999877 7799999999999999999999999764 456788888998766 57888766553
No 18
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.03 E-value=7.2e-10 Score=75.19 Aligned_cols=58 Identities=31% Similarity=0.458 Sum_probs=48.6
Q ss_pred cEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCCCC------hHHHHHHHHhCCCC
Q 033480 31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSRR------ASTTIDKLKSLGFD 88 (118)
Q Consensus 31 ~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~------~~~~~~~L~~~gi~ 88 (118)
|+++||+||||+++ ..++||+.++|++|+++|++++|+||++.. ...+...++.+++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 57999999999963 367999999999999999999999998611 23466788999986
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.02 E-value=7.7e-10 Score=80.59 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=45.7
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
.++||+.++|++|+++|++++|+||+++ ..+...|+.+|+..+ |+.+++++++
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~--~~~~~~l~~~gl~~~-f~~i~~~~~~ 134 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMR--DTVEMGLKLTGLDEF-FDVVITLDDV 134 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCChhc-eeEEEecCcC
Confidence 4789999999999999999999999864 446688999999998 7999987653
No 20
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.99 E-value=1e-09 Score=79.17 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=57.8
Q ss_pred CcEEEEeccCcccCCC---------------------------ccCccHHHHHHHHHHCCCcEEEEeCC-CCChHHHHHH
Q 033480 30 FKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNS-SRRASTTIDK 81 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~---------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~-~r~~~~~~~~ 81 (118)
.+.++||+|+|+|.+. +++||+.++|+.|+++|++++|+||+ ++. .+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--~~~~~ 79 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--WAYEI 79 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH--HHHHH
Confidence 4789999999998751 46899999999999999999999997 443 35678
Q ss_pred HHhCCCC---------CcCCCceeehHHH
Q 033480 82 LKSLGFD---------PSLFAGAITSGEL 101 (118)
Q Consensus 82 L~~~gi~---------~~~fd~iits~~v 101 (118)
|+.+++. .+ |+.+++++++
T Consensus 80 L~~~~l~~~~~~~~~~~~-Fd~iv~~~~~ 107 (174)
T TIGR01685 80 LGTFEITYAGKTVPMHSL-FDDRIEIYKP 107 (174)
T ss_pred HHhCCcCCCCCcccHHHh-ceeeeeccCC
Confidence 8999998 88 7999988764
No 21
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.99 E-value=8.3e-10 Score=81.79 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=45.6
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
.++||+.++|+.|+++|++++|+||+++ ..+...++.+|+..+ ||.+++++++
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~--~~~~~~l~~~~l~~~-fd~iv~s~~~ 145 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHP--HNLAVKLEHTGLDAH-LDLLLSTHTF 145 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCH--HHHHHHHHHCCcHHH-CCEEEEeeeC
Confidence 4689999999999999999999999865 345677899999988 7999988765
No 22
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=80.86 Aligned_cols=56 Identities=32% Similarity=0.494 Sum_probs=48.8
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
.++||+.++|+.|+++|++++++||+++. .+...|+.+|+..+ |+.+++++++.+.
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~--~~~~~L~~~gl~~~-f~~~v~~~dv~~~ 141 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRR--AAERVLARLGLLDY-FDVIVTADDVARG 141 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHH--HHHHHHHHccChhh-cchhccHHHHhcC
Confidence 57899999999999999999999998653 36688899999999 7999999987654
No 23
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.94 E-value=1.7e-09 Score=86.39 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=46.1
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
++||+.++|+.|+++|++++|+||+++ ..+...|+.+|+..+ ||.+++++++
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~--~~~~~~L~~lgL~~y-Fd~Iv~sddv 268 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPR--KTLENAIGSIGIRGF-FSVIVAAEDV 268 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCHHH-ceEEEecCcC
Confidence 478999999999999999999999865 456788999999999 7999999875
No 24
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.94 E-value=3.5e-09 Score=75.59 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=38.1
Q ss_pred cEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 31 ~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
+.+|||.||||..+ ..++||+.++|++|+++|++++|+||++.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 68999999999843 24689999999999999999999999874
No 25
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.93 E-value=4.1e-09 Score=73.28 Aligned_cols=58 Identities=31% Similarity=0.517 Sum_probs=48.0
Q ss_pred cEEEEeccCcccCCC-----------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-------------hHHHHHHHHhCC
Q 033480 31 KAWLLDQFGVLHDGK-----------KPYPGAISTLEMLATTGAKMVVISNSSRR-------------ASTTIDKLKSLG 86 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~-----------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-------------~~~~~~~L~~~g 86 (118)
++++||+||||..+. .++||+.++|+.|+++|++++|+||+++. ...+...++.+|
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 478999999998765 36999999999999999999999998641 123556778899
Q ss_pred CC
Q 033480 87 FD 88 (118)
Q Consensus 87 i~ 88 (118)
+.
T Consensus 81 l~ 82 (147)
T TIGR01656 81 VA 82 (147)
T ss_pred Cc
Confidence 86
No 26
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.91 E-value=7.9e-09 Score=73.87 Aligned_cols=67 Identities=28% Similarity=0.357 Sum_probs=50.7
Q ss_pred CCcEEEEeccCcccCCC----------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-------------hHHHHHHHHhC
Q 033480 29 RFKAWLLDQFGVLHDGK----------KPYPGAISTLEMLATTGAKMVVISNSSRR-------------ASTTIDKLKSL 85 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~----------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-------------~~~~~~~L~~~ 85 (118)
.+|.++||.||||..+. .++||+.++|++|+++|++++|+||+++. ...+...++.+
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADR 81 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc
Confidence 57999999999996543 46899999999999999999999998631 11233456677
Q ss_pred CCCCcCCCceeeh
Q 033480 86 GFDPSLFAGAITS 98 (118)
Q Consensus 86 gi~~~~fd~iits 98 (118)
|+. |+.++++
T Consensus 82 g~~---f~~i~~~ 91 (181)
T PRK08942 82 GGR---LDGIYYC 91 (181)
T ss_pred CCc---cceEEEC
Confidence 763 5666653
No 27
>PRK11587 putative phosphatase; Provisional
Probab=98.90 E-value=8.1e-09 Score=75.64 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=42.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|+.|+++|++++|+||+++. .....++..++. + |+.+++++++
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~--~~~~~l~~~~l~-~-~~~i~~~~~~ 134 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVP--VASARHKAAGLP-A-PEVFVTAERV 134 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCch--HHHHHHHhcCCC-C-ccEEEEHHHh
Confidence 357899999999999999999999998653 345677888884 4 5788887664
No 28
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.89 E-value=3.6e-09 Score=80.33 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=46.1
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
.++||+.++|++|+++|++++|+||+++ ..+...++.+|+..+ |+.+++++++
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~--~~~~~~l~~~gl~~~-Fd~ii~~~d~ 161 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPR--RYLERAIEAVGMEGF-FSVVLAAEDV 161 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCH--HHHHHHHHHcCCHhh-CcEEEecccC
Confidence 3689999999999999999999999865 346688999999998 7999999875
No 29
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.89 E-value=6.4e-09 Score=73.97 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=50.0
Q ss_pred cEEEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCC-------------ChHHHHHHHHhC
Q 033480 31 KAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKLKSL 85 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-------------~~~~~~~~L~~~ 85 (118)
+.+|||.||||.... .++||+.++|++|+++|++++|+||++. ....+...++.+
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 689999999998732 4689999999999999999999999741 122355678999
Q ss_pred CCCCcCCCcee
Q 033480 86 GFDPSLFAGAI 96 (118)
Q Consensus 86 gi~~~~fd~ii 96 (118)
|+. |+.++
T Consensus 82 gl~---fd~ii 89 (161)
T TIGR01261 82 GII---FDDVL 89 (161)
T ss_pred CCc---eeEEE
Confidence 996 46564
No 30
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.88 E-value=6.9e-09 Score=72.91 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=57.1
Q ss_pred CcEEEEeccCcccCCCc-------------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480 30 FKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~-------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii 96 (118)
++.+|||+||||+.+.. ..++ .+|++|+++|++++|+||+++. .+...++.+|+..+ |+...
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~--~~~~~l~~~gi~~~-~~~~~ 75 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAK--LVEDRCKTLGITHL-YQGQS 75 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCH--HHHHHHHHcCCCEE-Eeccc
Confidence 47899999999998422 1122 3799999999999999998654 45688899999887 67766
Q ss_pred ehHHHHHHHHHhcc
Q 033480 97 TSGELTHQYLLRLI 110 (118)
Q Consensus 97 ts~~v~~~~l~~~~ 110 (118)
...+...+++++..
T Consensus 76 ~k~~~~~~~~~~~~ 89 (154)
T TIGR01670 76 NKLIAFSDILEKLA 89 (154)
T ss_pred chHHHHHHHHHHcC
Confidence 66666666666543
No 31
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.88 E-value=6.3e-09 Score=78.11 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=50.0
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
|.+|.+++|+||||++... +.|...++|++|+++|++++++|+++. ..+...++.+++..
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~ 61 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPY--AGVHRYLKELHMEQ 61 (270)
T ss_pred CceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCCh--HHHHHHHHHhCCCC
Confidence 5689999999999998764 668999999999999999999998653 34567777788753
No 32
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.87 E-value=7.2e-09 Score=75.92 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=49.5
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
|.+|.+++|+||||+++.. +.|.+.++|++|+++|++++++|+++. ..+...++.++++.
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~ 61 (230)
T PRK01158 1 MKIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVL--CFARAAAKLIGTSG 61 (230)
T ss_pred CceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCCC
Confidence 4689999999999998766 568999999999999999999998653 34556667788753
No 33
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.86 E-value=5.7e-09 Score=79.09 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=51.8
Q ss_pred cCCcEEEEeccCcccC-CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 28 RRFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~-~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
|.++.+++|+||||++ +....+++.++|++|+++|++++++||++. ..+...++.+|+..+
T Consensus 2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~--~~~~~~~~~l~l~~~ 63 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTA--AEVEVLRKELGLEDP 63 (273)
T ss_pred CcceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCCC
Confidence 5789999999999998 456789999999999999999999998754 456778888888644
No 34
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.84 E-value=1.2e-08 Score=76.43 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=49.5
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
|.+|.+++|+||||+++.. +.|...++|++|+++|+.++++|+++. ..+...++.+++.
T Consensus 1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~--~~~~~~~~~l~~~ 60 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHH--VAIHPFYQALALD 60 (272)
T ss_pred CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCC
Confidence 5689999999999998765 679999999999999999999998653 3456677777765
No 35
>PRK06769 hypothetical protein; Validated
Probab=98.83 E-value=1.2e-08 Score=72.89 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=48.9
Q ss_pred CCcEEEEeccCcccCC--------CccCccHHHHHHHHHHCCCcEEEEeCCCCC------hHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSSRR------ASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~--------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~------~~~~~~~L~~~gi~~~ 90 (118)
+|+++++|.||||... ..++||+.++|++|+++|++++|+||++.. .......++.+|+..+
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~ 78 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDI 78 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEE
Confidence 7999999999999433 246899999999999999999999998631 0124455788887654
No 36
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.83 E-value=6.7e-09 Score=79.25 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=63.4
Q ss_pred CcEEEEeccCcccC-------------CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC-cCCCce
Q 033480 30 FKAWLLDQFGVLHD-------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGA 95 (118)
Q Consensus 30 ~~~~~~D~DGtL~~-------------~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~-~~fd~i 95 (118)
.+.+++|+|||+.. +..++||+.++|++|+++|++++++||++... ....++.+++.. + |+.+
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~--~~~~l~~l~~~~~~-f~~i 234 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC--EEDTVEWLRQTDIW-FDDL 234 (300)
T ss_pred CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh--HHHHHHHHHHcCCc-hhhh
Confidence 57899999999986 44689999999999999999999999987533 456777788875 6 7888
Q ss_pred eehHHHHHHHHHhccCCCc
Q 033480 96 ITSGELTHQYLLRLIIASS 114 (118)
Q Consensus 96 its~~v~~~~l~~~~~~~~ 114 (118)
++... ...||+....+++
T Consensus 235 ~~~~~-~~~~~~~~~~~kp 252 (300)
T PHA02530 235 IGRPP-DMHFQREQGDKRP 252 (300)
T ss_pred hCCcc-hhhhcccCCCCCC
Confidence 88773 5556766554443
No 37
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.82 E-value=1.2e-08 Score=74.82 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
...++||+.++|+.|+++|++++|+||+++ ..+...++.+|+..+ |+.++++++
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~ 143 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASPL--HMLEAVLTMFDLRDY-FDALASAEK 143 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCcH--HHHHHHHHhCcchhc-ccEEEEccc
Confidence 356899999999999999999999999865 346678899999998 799998765
No 38
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.82 E-value=1.8e-08 Score=69.31 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=50.4
Q ss_pred cEEEEeccCcccCCC-------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-hH------------HHHHHHHhCCCCCc
Q 033480 31 KAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNSSRR-AS------------TTIDKLKSLGFDPS 90 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~-------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~------------~~~~~L~~~gi~~~ 90 (118)
|.+++|+||||..+. .+.+++.+.|++|+++|+.++++|+++.. .. ...+.|.+.+++
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip-- 79 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP-- 79 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--
Confidence 689999999998743 25679999999999999999999988632 22 456777888876
Q ss_pred CCCceeeh
Q 033480 91 LFAGAITS 98 (118)
Q Consensus 91 ~fd~iits 98 (118)
||.++..
T Consensus 80 -Yd~l~~~ 86 (126)
T TIGR01689 80 -YDEIYVG 86 (126)
T ss_pred -CceEEeC
Confidence 5666643
No 39
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.79 E-value=1.7e-08 Score=76.10 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=60.4
Q ss_pred ccchhhHHHHHhhcCCc--EEEEeccCcccCCCc-----------------------------------cCccHHHHHHH
Q 033480 15 FQTLNGLRHIAETRRFK--AWLLDQFGVLHDGKK-----------------------------------PYPGAISTLEM 57 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~D~DGtL~~~~~-----------------------------------~~pga~e~L~~ 57 (118)
..+.+.+++=++ +.+ +++||+||||+.... +.+++.|+|++
T Consensus 48 ~~~~~~~~~~~~--~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~ 125 (237)
T TIGR01672 48 WISVAQIENSLE--GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDM 125 (237)
T ss_pred EEEHHHHHHhcC--CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHH
Confidence 344556665555 443 899999999976532 12239999999
Q ss_pred HHHCCCcEEEEeCCCC--ChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 58 LATTGAKMVVISNSSR--RASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 58 Lk~~Gi~v~I~TN~~r--~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
|+++|++++++||+.. ....+...++.+|++.+ |+.+++++.
T Consensus 126 l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~-f~~i~~~d~ 169 (237)
T TIGR01672 126 HQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM-NPVIFAGDK 169 (237)
T ss_pred HHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh-eeEEECCCC
Confidence 9999999999999853 22345566678999988 688888665
No 40
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.77 E-value=3.2e-08 Score=73.00 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=43.7
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit 97 (118)
.++||+.++|++|+++|++++|+||+++ ..+...|+++|+..+ |+.+++
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~--~~~~~~l~~~gl~~~-F~~i~g 137 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPE--RELDILLKALGLADY-FDVIVG 137 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHHHhCCccc-cceEEc
Confidence 3689999999999999999999999865 346788999999999 799998
No 41
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=98.77 E-value=5.9e-08 Score=69.20 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=60.0
Q ss_pred hcCCcEEEEeccCcccCC--CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 27 TRRFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 27 ~~~~~~~~~D~DGtL~~~--~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
..+++.+++|+|||++.. ..++||+.++|++|+++|++++++||++. ...+...++.+|+..+ +...-...+....
T Consensus 22 ~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~-~~~~~~~~~~~gl~~~-~~~~KP~p~~~~~ 99 (170)
T TIGR01668 22 KVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAG-EQRAKAVEKALGIPVL-PHAVKPPGCAFRR 99 (170)
T ss_pred HCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCch-HHHHHHHHHHcCCEEE-cCCCCCChHHHHH
Confidence 358999999999999853 35899999999999999999999999862 1233455577887644 2333444455556
Q ss_pred HHHhcc
Q 033480 105 YLLRLI 110 (118)
Q Consensus 105 ~l~~~~ 110 (118)
.+++..
T Consensus 100 ~l~~~~ 105 (170)
T TIGR01668 100 AHPEMG 105 (170)
T ss_pred HHHHcC
Confidence 666654
No 42
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.76 E-value=2.3e-08 Score=74.38 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=47.4
Q ss_pred EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+++|+||||+++....|++.++|++|+++|++++++|++++ ..+...++.+|+..
T Consensus 2 i~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~--~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 2 IFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTR--AEQEYYREELGVEP 56 (225)
T ss_pred EEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCCC
Confidence 78999999999777889999999999999999999997643 45677888898753
No 43
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.74 E-value=2.2e-08 Score=76.59 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=43.9
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
+++||+.++|++|+++|++++|+||+++ ..+...|+.+|+..+ |+.++++.+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~--~~~~~~L~~~gl~~~-F~~vi~~~~ 193 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSR--QNIEAFLQRQGLRSL-FSVVQAGTP 193 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCChhh-eEEEEecCC
Confidence 4579999999999999999999999865 446688899999988 788877654
No 44
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.74 E-value=2.3e-08 Score=69.75 Aligned_cols=70 Identities=20% Similarity=0.075 Sum_probs=55.5
Q ss_pred CcEEEEeccCcccCCC---------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHH
Q 033480 30 FKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~---------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L 82 (118)
...+++|+||||.+.. .+.||+.|+|++|+ ++++++|+||+++. .+...+
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~--~~~~il 78 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRM--YADPVL 78 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHH--HHHHHH
Confidence 4578999999998741 24899999999998 57999999998654 355778
Q ss_pred HhCCCCCcCCCceeehHHHH
Q 033480 83 KSLGFDPSLFAGAITSGELT 102 (118)
Q Consensus 83 ~~~gi~~~~fd~iits~~v~ 102 (118)
+.+++..++|+.++++++..
T Consensus 79 ~~l~~~~~~f~~i~~~~d~~ 98 (148)
T smart00577 79 DLLDPKKYFGYRRLFRDECV 98 (148)
T ss_pred HHhCcCCCEeeeEEECcccc
Confidence 88988654368899988764
No 45
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.73 E-value=3.6e-08 Score=74.37 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=48.9
Q ss_pred CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+|.+++|+||||++... +.+.+.++|++|+++|++++++|+++ ...+...++.++++.
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRH--VLEMQHILGALSLDA 60 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHcCCCC
Confidence 78999999999998654 67999999999999999999999864 345667788888763
No 46
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.73 E-value=3.2e-08 Score=72.24 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=47.4
Q ss_pred CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+|.+++|+||||+++.. +.|.+.++|++|+++|++++++|+++. ..+...++.+++.
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~--~~~~~~~~~l~~~ 58 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTV--PFARALAVLIGTS 58 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcc--hhHHHHHHHhCCC
Confidence 47899999999998765 669999999999999999999998764 3355666777765
No 47
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.72 E-value=3.1e-08 Score=73.28 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=44.1
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
.++||+.++|+.|+++|++++|+||+++ ......++.+|+..+ |+.+++++++
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~--~~~~~~l~~~~l~~~-f~~i~~~~~~ 147 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPE--YLARLILPQLGWEQR-CAVLIGGDTL 147 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCchhc-ccEEEecCcC
Confidence 4689999999999999999999999864 335578899999988 7888887653
No 48
>PRK10976 putative hydrolase; Provisional
Probab=98.72 E-value=4e-08 Score=73.69 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=48.6
Q ss_pred CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+|.+++|+||||++... +-|.+.++|++|+++|++++++|+++. ..+...++.++++.
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~ 60 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHH--VDVGQIRDNLEIKS 60 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCCC
Confidence 68999999999998765 678999999999999999999998653 34566778888753
No 49
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.72 E-value=4.1e-08 Score=74.35 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=49.6
Q ss_pred cCCcEEEEeccCcccCCCccC-ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~-pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+.++.+++|+||||+++...+ +.+.++|++|+++|++++++|+++ ...+...++.+|++
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~~~~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKT--AAEMLPLQQTLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCC--HHHHHHHHHHhCCC
Confidence 378999999999999876654 789999999999999999999865 34566778888874
No 50
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.70 E-value=2.6e-08 Score=77.44 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCcEEEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh----CCCCCcCC
Q 033480 29 RFKAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS----LGFDPSLF 92 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~----~gi~~~~f 92 (118)
.+|.+++|+|+|||.+. .++||+.++|+.|+++|++++|+||+++ ..+...|+. +++..+ |
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~--~~a~~~l~~~~~~~~~~~~-f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDE--DDAKKVFERRKDFILQAED-F 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCH--HHHHHHHHhCccccCcHHH-e
Confidence 46899999999999874 3578999999999999999999999865 446788888 888887 6
Q ss_pred Cceeeh
Q 033480 93 AGAITS 98 (118)
Q Consensus 93 d~iits 98 (118)
+.+..+
T Consensus 79 ~~~~~~ 84 (320)
T TIGR01686 79 DARSIN 84 (320)
T ss_pred eEEEEe
Confidence 776664
No 51
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.68 E-value=1.1e-07 Score=72.88 Aligned_cols=70 Identities=27% Similarity=0.375 Sum_probs=56.1
Q ss_pred CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHH
Q 033480 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTID 80 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~ 80 (118)
+..+++||+|+|++.+ ..++||+.++|+.|+++|++++++||++.. .+....
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~ 153 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK 153 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence 4679999999999632 146899999999999999999999998743 455678
Q ss_pred HHHhCCCCCcCCCceeeh
Q 033480 81 KLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 81 ~L~~~gi~~~~fd~iits 98 (118)
.|+.+|++...++.+++.
T Consensus 154 ~Lkk~Gi~~~~~d~lllr 171 (266)
T TIGR01533 154 NLKRFGFPQADEEHLLLK 171 (266)
T ss_pred HHHHcCcCCCCcceEEeC
Confidence 899999986534677754
No 52
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.68 E-value=6e-08 Score=72.76 Aligned_cols=60 Identities=27% Similarity=0.351 Sum_probs=52.2
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
|.++.+++|+||||++... +-+.+.++|++++++|++++++|+++ ...+...++.+++..
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~--~~~~~~~~~~l~~~~ 61 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRP--LPDVLSILEELGLDG 61 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHcCCCc
Confidence 4789999999999998876 66999999999999999999999864 356778889999874
No 53
>PLN02940 riboflavin kinase
Probab=98.68 E-value=5e-08 Score=77.81 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=44.8
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH-hCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~-~~gi~~~~fd~iits~~v 101 (118)
.++||+.++|+.|+++|++++|+||+++. .+...++ .+|+..+ ||.+++++++
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~--~~~~~l~~~~gl~~~-Fd~ii~~d~v 146 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRA--NIEAKISCHQGWKES-FSVIVGGDEV 146 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHhccChHhh-CCEEEehhhc
Confidence 46899999999999999999999998653 3556776 6899888 7999999875
No 54
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.67 E-value=3.8e-08 Score=81.53 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=57.8
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCCC----------hH
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRR----------AS 76 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~----------~~ 76 (118)
+...+.. ..|.++||+||||.... .++||+.+.|++|+++|++++|+||.+.. ..
T Consensus 160 ~~~~~~~--~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ 237 (526)
T TIGR01663 160 TAAGVKG--QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKA 237 (526)
T ss_pred ecCCcCc--cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHH
Confidence 3444545 68999999999998642 15899999999999999999999998652 02
Q ss_pred HHHHHHHhCCCCCcCCCceeehH
Q 033480 77 TTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 77 ~~~~~L~~~gi~~~~fd~iits~ 99 (118)
.+...|+.+|++ |+.+++++
T Consensus 238 ki~~iL~~lgip---fdviia~~ 257 (526)
T TIGR01663 238 KIEAIVAKLGVP---FQVFIAIG 257 (526)
T ss_pred HHHHHHHHcCCc---eEEEEeCC
Confidence 356778889986 57777654
No 55
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.66 E-value=5.4e-08 Score=69.88 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCcEEEEeccCcccCCCccCcc-----------HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPG-----------AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pg-----------a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit 97 (118)
.++.++||+||||..+.-.+.. =...|+.|+++|++++|+||+++. .+...++.+|+..+ |+.+-.
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~--~~~~~l~~lgi~~~-f~~~kp 82 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSG--AVRHRAEELKIKRF-HEGIKK 82 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcH--HHHHHHHHCCCcEE-EecCCC
Confidence 6999999999999998643311 123789999999999999998653 46689999999987 676654
Q ss_pred hHHHHHHHHHhcc
Q 033480 98 SGELTHQYLLRLI 110 (118)
Q Consensus 98 s~~v~~~~l~~~~ 110 (118)
.-+....++.+..
T Consensus 83 kp~~~~~~~~~l~ 95 (169)
T TIGR02726 83 KTEPYAQMLEEMN 95 (169)
T ss_pred CHHHHHHHHHHcC
Confidence 5555666666654
No 56
>PTZ00174 phosphomannomutase; Provisional
Probab=98.66 E-value=6.3e-08 Score=72.62 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=45.2
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~ 83 (118)
|.++.+++|+||||+++.. +.|...++|++++++|+.++++|+++ ...+...++
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~l~ 57 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSD--YPKIKEQLG 57 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHh
Confidence 7899999999999998875 66899999999999999999999864 334445554
No 57
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=98.66 E-value=5.8e-08 Score=75.98 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=64.5
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHC----CCcEEEEeCCCCCh-HHHHHHHH-hCCCCCcCCCceeehHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRA-STTIDKLK-SLGFDPSLFAGAITSGELT 102 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~----Gi~v~I~TN~~r~~-~~~~~~L~-~~gi~~~~fd~iits~~v~ 102 (118)
+.-+|.||+||||.++.+++||+.++++.|.++ .+|.+++||++... ..-.+.|. .+|..+.. |+++-|+...
T Consensus 34 ~~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~-dqviqSHsP~ 112 (389)
T KOG1618|consen 34 PTFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSA-DQVIQSHSPF 112 (389)
T ss_pred CceeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCH-HHHHhhcChH
Confidence 345799999999999999999999999999888 89999999987432 22335554 48999886 9999999998
Q ss_pred HHHH
Q 033480 103 HQYL 106 (118)
Q Consensus 103 ~~~l 106 (118)
+.+.
T Consensus 113 r~l~ 116 (389)
T KOG1618|consen 113 RLLV 116 (389)
T ss_pred HHHh
Confidence 8877
No 58
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.64 E-value=1.2e-07 Score=68.32 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=57.0
Q ss_pred CCcEEEEeccCcccCC-------Cc-cCccHH---HHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480 29 RFKAWLLDQFGVLHDG-------KK-PYPGAI---STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~-------~~-~~pga~---e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit 97 (118)
.++.+++|+||||+.+ .+ ..+-.. ..++.|+++|++++|+||++. ..+...++.+|+..+ |+..-.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~--~~v~~~l~~lgl~~~-f~g~~~ 96 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKS--KLVEDRMTTLGITHL-YQGQSN 96 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCcee-ecCCCc
Confidence 6999999999999975 22 222222 578999999999999999754 446788899999877 564433
Q ss_pred hHHHHHHHHHhcc
Q 033480 98 SGELTHQYLLRLI 110 (118)
Q Consensus 98 s~~v~~~~l~~~~ 110 (118)
..+....++++..
T Consensus 97 k~~~l~~~~~~~g 109 (183)
T PRK09484 97 KLIAFSDLLEKLA 109 (183)
T ss_pred HHHHHHHHHHHhC
Confidence 3444556566554
No 59
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=98.64 E-value=2.3e-07 Score=66.55 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=65.7
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCc--cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~--~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~ 99 (118)
+.+.+ ++++++++|+|.||..... .-|++.+.+++++..|+++.|+||+++. .+....+.+|++-. +-.---..
T Consensus 21 ~~L~~-~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~--RV~~~~~~l~v~fi-~~A~KP~~ 96 (175)
T COG2179 21 DILKA-HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKES--RVARAAEKLGVPFI-YRAKKPFG 96 (175)
T ss_pred HHHHH-cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHH--HHHhhhhhcCCcee-ecccCccH
Confidence 34444 6899999999999976554 5699999999999999999999998653 36677888998743 34555555
Q ss_pred HHHHHHHHhcc
Q 033480 100 ELTHQYLLRLI 110 (118)
Q Consensus 100 ~v~~~~l~~~~ 110 (118)
...++.|+++.
T Consensus 97 ~~fr~Al~~m~ 107 (175)
T COG2179 97 RAFRRALKEMN 107 (175)
T ss_pred HHHHHHHHHcC
Confidence 66777787776
No 60
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.64 E-value=1.3e-07 Score=71.26 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=57.6
Q ss_pred ccchhhHHHHHhhcCCcEEEEeccCcccCCC-----------------------------------ccCccHHHHHHHHH
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLA 59 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~-----------------------------------~~~pga~e~L~~Lk 59 (118)
..+.+.+++-+.-++.-.+.||+|||++.+. .++||+.++|++|+
T Consensus 48 ~~~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~ 127 (237)
T PRK11009 48 WVSVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHV 127 (237)
T ss_pred EEEHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHH
Confidence 3344455544441123389999999998521 24677999999999
Q ss_pred HCCCcEEEEeCCCCC-hH-HHHHHHHhCCC--CCcCCCceeehH
Q 033480 60 TTGAKMVVISNSSRR-AS-TTIDKLKSLGF--DPSLFAGAITSG 99 (118)
Q Consensus 60 ~~Gi~v~I~TN~~r~-~~-~~~~~L~~~gi--~~~~fd~iits~ 99 (118)
++|++++++||++.. .. .....++.+|+ ..+ |+.+++++
T Consensus 128 ~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~-f~vil~gd 170 (237)
T PRK11009 128 KRGDSIYFITGRTATKTETVSKTLADDFHIPADNM-NPVIFAGD 170 (237)
T ss_pred HCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccc-eeEEEcCC
Confidence 999999999997632 22 33444456999 666 67777766
No 61
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.63 E-value=9e-08 Score=74.31 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=49.6
Q ss_pred CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
+|.||+|+||||++... ..+.+.++|++|+++|++++++|+++ ..++...++.+++..+
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt--~~ev~~l~~~Lgl~~p 60 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRT--RAQLEHLCRQLRLEHP 60 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHhCCCCe
Confidence 47899999999998554 67889999999999999999999864 3557778888998754
No 62
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.63 E-value=1.3e-07 Score=68.69 Aligned_cols=53 Identities=26% Similarity=0.430 Sum_probs=44.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
..++||+.++|+.|+++|++++++||+.. ..+...++.+|+..+ |+.++++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~ 144 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPT--PFVAPLLEALGIADY-FSVVIGGDS 144 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCccC-ccEEEcCCC
Confidence 45789999999999999999999999854 345678889999888 788887654
No 63
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.61 E-value=9.4e-08 Score=72.79 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=44.3
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
..++||+.++|+.|+++|++++|+||+++. .+...++.+++..+ |+.++++++
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~--~~~~~l~~~~i~~~-f~~i~~~d~ 152 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPER--FVAPLLDQMKIGRY-FRWIIGGDT 152 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHH--HHHHHHHHcCcHhh-CeEEEecCC
Confidence 356899999999999999999999998643 35578888999888 798888764
No 64
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.60 E-value=1.3e-07 Score=67.21 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=41.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++|+ .+.|+.|++. ++++|+||+++. .+...|+.+|+..+ ||.+++++++
T Consensus 87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~--~~~~~l~~~~l~~~-fd~i~~~~~~ 138 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESA--IAEALLAHLGLRRY-FDAVVAADDV 138 (188)
T ss_pred CCCccH-HHHHHHHHhC-CCEEEEcCCchH--HHHHHHHhCCcHhH-ceEEEehhhc
Confidence 356674 5888888765 899999997653 46688999999998 7999999875
No 65
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.59 E-value=1.5e-07 Score=70.53 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=46.8
Q ss_pred EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++|+||||+++.. .++.+.++|++|+++|++++++|++ +...+...++.+|+.
T Consensus 2 i~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR--~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSK--TAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCC--CHHHHHHHHHHcCCC
Confidence 78999999999877 7788999999999999999999975 445577888888875
No 66
>PLN02887 hydrolase family protein
Probab=98.59 E-value=1.7e-07 Score=78.45 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=49.9
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++|.+++|+||||+++.. +-+...++|++|+++|+.++++|+++ ...+...++.+++.
T Consensus 306 ~~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~--~~~i~~~l~~L~l~ 365 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKA--RPAVIDILKMVDLA 365 (580)
T ss_pred cCccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHhCcc
Confidence 4899999999999998765 67999999999999999999999864 34466777777764
No 67
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.59 E-value=1.6e-07 Score=66.53 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=41.6
Q ss_pred EEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHHHh
Q 033480 33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKS 84 (118)
Q Consensus 33 ~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L~~ 84 (118)
+++|+||||++.. ...|++.+++++++++|++++++|+++... ......|..
T Consensus 2 VisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 2 VISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred EEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 7899999999875 467999999999999999999999876332 222355555
No 68
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.58 E-value=1.7e-07 Score=68.52 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=45.3
Q ss_pred EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++|+||||+++.. ..+.+.++|++|+++|++++++||++. ..+...++.+++.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~--~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTA--AEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCC
Confidence 78999999998765 566699999999999999999998754 4466777888875
No 69
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.55 E-value=2.8e-07 Score=73.18 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=50.7
Q ss_pred CCcEEEEeccCcccCC------------CccCccHHHHHHHHHHCCCcEEEEeCCCC-------------ChHHHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKLK 83 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-------------~~~~~~~~L~ 83 (118)
+.+.+|||.||||+.. ..++||+.++|++|+++|++++|+||++. ....+...++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 3688999999999875 45799999999999999999999999620 1223456778
Q ss_pred hCCCCCcCCCcee
Q 033480 84 SLGFDPSLFAGAI 96 (118)
Q Consensus 84 ~~gi~~~~fd~ii 96 (118)
.+|+. |+.++
T Consensus 81 ~~gl~---fd~i~ 90 (354)
T PRK05446 81 SQGIK---FDEVL 90 (354)
T ss_pred HcCCc---eeeEE
Confidence 88884 46654
No 70
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.55 E-value=2.2e-07 Score=67.36 Aligned_cols=54 Identities=31% Similarity=0.406 Sum_probs=45.9
Q ss_pred EEEeccCcccCCC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 33 WLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 33 ~~~D~DGtL~~~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++|+||||++.. .+.|...++|++|+++|++++++|++ ....+...++.+++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR--~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGR--SYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSS--THHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccC--cccccccccccccch
Confidence 6899999998755 46799999999999999999999976 445577888888876
No 71
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.54 E-value=4.1e-07 Score=66.19 Aligned_cols=45 Identities=29% Similarity=0.308 Sum_probs=37.0
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA 93 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd 93 (118)
.++||+.++|+.|+++|++++|+||+.+ ..+...++.+|+... |+
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~--~~~~~~l~~~~i~~~-~~ 129 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFD--LFAEHVKDKLGLDAA-FA 129 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCce-Ee
Confidence 4679999999999999999999999754 345677888998776 54
No 72
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.54 E-value=2.9e-07 Score=68.73 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=46.1
Q ss_pred EEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++|+||||+++.. +.+.+.++|++|+++|++++++|+++. ..+...++.+++.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~--~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPY--KEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence 378999999998765 568999999999999999999998753 4466777888875
No 73
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.51 E-value=2.5e-07 Score=67.42 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=44.1
Q ss_pred EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++|+||||+++.. +.|.+.++|++|+++|++++++|+++. ..+...++.+++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~--~~~~~~~~~l~~~ 55 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSV--QFARALAKLIGTP 55 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCC
Confidence 58999999998765 568899999999999999999998653 3455677778754
No 74
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.46 E-value=4.5e-07 Score=64.71 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=39.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii 96 (118)
...++||+.++|+.|+++|++++|+||+.+ ..+...++.+|+... |+..+
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~--~~~~~~l~~~g~~~~-~~~~~ 127 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIM--CLAKKVAEKLNPDYV-YSNEL 127 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcH--HHHHHHHHHhCCCeE-EEEEE
Confidence 346789999999999999999999999854 345677888998765 45444
No 75
>PLN02954 phosphoserine phosphatase
Probab=98.41 E-value=9.4e-07 Score=64.51 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.3
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
++||+.++|+.|+++|++++|+||+.+ ..+...++.+|++
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~--~~i~~~l~~~gi~ 124 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFR--QMIAPVAAILGIP 124 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHhCCC
Confidence 569999999999999999999999865 3466778889986
No 76
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.39 E-value=5.3e-07 Score=67.55 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=48.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
...++||+.++|++|+++|++++|+||+++ ..+...|+++|+..+ |+.+++++++
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~--~~~~~~l~~~gl~~~-Fd~iv~~~~~ 160 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPR--ENAELMISLLGLSDF-FQAVIIGSEC 160 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHHcCChhh-CcEEEecCcC
Confidence 456899999999999999999999999865 446788999999998 7999999874
No 77
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.33 E-value=1.6e-06 Score=63.25 Aligned_cols=51 Identities=25% Similarity=0.291 Sum_probs=40.0
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC-ceeehHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA-GAITSGE 100 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd-~iits~~ 100 (118)
...++||+.++|+.| +++++|+||+++ ..+...|+.+|+..+ |+ .++++.+
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~--~~~~~~l~~~~l~~~-F~~~v~~~~~ 137 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPV--SKMQHSLGKTGMLHY-FPDKLFSGYD 137 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcH--HHHHHHHHhcChHHh-CcceEeeHHh
Confidence 346789999999988 489999999854 346678999999988 76 4666654
No 78
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.32 E-value=1.4e-06 Score=62.59 Aligned_cols=55 Identities=22% Similarity=0.390 Sum_probs=47.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
...++||+.++|++|+++|++++++||++. ..+...++.+|+..+ ||.+++++++
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~ 144 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSP--AMLKSLVKHAGLDDP-FDAVLSADAV 144 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHCCChhh-hheeEehhhc
Confidence 446789999999999999999999999854 446688899999888 7999998875
No 79
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.30 E-value=4.6e-06 Score=60.66 Aligned_cols=66 Identities=33% Similarity=0.449 Sum_probs=50.5
Q ss_pred CCcEEEEeccCcccCCCc----------cCccHHHHHHHHHHCCCcEEEEeCCC---CC----------hHHHHHHHHhC
Q 033480 29 RFKAWLLDQFGVLHDGKK----------PYPGAISTLEMLATTGAKMVVISNSS---RR----------ASTTIDKLKSL 85 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~----------~~pga~e~L~~Lk~~Gi~v~I~TN~~---r~----------~~~~~~~L~~~ 85 (118)
..+.+|+|.||||..+.. +.||+.+++..|++.|++++++||.+ |. +..+...|+..
T Consensus 4 ~~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~ 83 (181)
T COG0241 4 DQKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ 83 (181)
T ss_pred CCcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence 468999999999986543 68999999999999999999999964 21 22355667777
Q ss_pred CCCCcCCCceee
Q 033480 86 GFDPSLFAGAIT 97 (118)
Q Consensus 86 gi~~~~fd~iit 97 (118)
|.. ||.+..
T Consensus 84 gv~---id~i~~ 92 (181)
T COG0241 84 GVK---IDGILY 92 (181)
T ss_pred CCc---cceEEE
Confidence 763 455553
No 80
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.30 E-value=1.8e-06 Score=76.63 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=44.3
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC-CcCCCceeehHHHH
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD-PSLFAGAITSGELT 102 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~-~~~fd~iits~~v~ 102 (118)
++||+.++|++|+++|++++|+||+.+ ..+...|+++|+. .+ ||.+++++++.
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~--~~~~~~L~~~gl~~~~-Fd~iv~~~~~~ 215 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADR--IKVDANLAAAGLPLSM-FDAIVSADAFE 215 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHHHcCCChhH-CCEEEECcccc
Confidence 478999999999999999999999854 3466788999996 66 79999988653
No 81
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.28 E-value=8.9e-07 Score=64.34 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=46.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|++|+++|++++|+||+++. .+...++.+|+..+ ||.+++++++
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~~ 146 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPV--KQWEKLERLGVRDF-FDAVITSEEE 146 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchH--HHHHHHHhCChHHh-ccEEEEeccC
Confidence 468999999999999999999999998643 35678999999998 7999988665
No 82
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.24 E-value=3.2e-06 Score=60.26 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCcEEEEeccCcccCCCccCccHH-----------HHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAI-----------STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~-----------e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit 97 (118)
++|.+++|+||||.++.-.+..-- -.|+.|.+.|++++|+|+. ....+..+.+.+|+... |-.+--
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr--~s~ive~Ra~~LGI~~~-~qG~~d 83 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGR--DSPIVEKRAKDLGIKHL-YQGISD 83 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHcCCcee-eechHh
Confidence 899999999999999863332211 1578889999999999975 44568899999999866 556555
Q ss_pred hHHHHHHHHHhcc
Q 033480 98 SGELTHQYLLRLI 110 (118)
Q Consensus 98 s~~v~~~~l~~~~ 110 (118)
...+..+.+.+..
T Consensus 84 K~~a~~~L~~~~~ 96 (170)
T COG1778 84 KLAAFEELLKKLN 96 (170)
T ss_pred HHHHHHHHHHHhC
Confidence 5555556665543
No 83
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.23 E-value=5.2e-06 Score=59.72 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=35.7
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA 93 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd 93 (118)
+++||+.++|+.|+++ ++++|+||+.+ ..+...++.+|++.+ |+
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~--~~~~~~l~~~gl~~~-f~ 111 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFY--EFAGPLMRQLGWPTL-FC 111 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcH--HHHHHHHHHcCCchh-hc
Confidence 3579999999999999 99999999854 345678888998765 44
No 84
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.23 E-value=4.8e-06 Score=62.62 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=54.2
Q ss_pred CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHH
Q 033480 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID 80 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~ 80 (118)
+..+++||+|.|++.+ .+++|++.++++.|+++|++++++||++. ..+...+
T Consensus 76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~ 155 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLD 155 (229)
T ss_pred CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 5789999999998763 24689999999999999999999999873 2344668
Q ss_pred HHHhCCCCCcCCCceeeh
Q 033480 81 KLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 81 ~L~~~gi~~~~fd~iits 98 (118)
.|...|++.+ +.++..
T Consensus 156 nL~~~G~~~~--~~LiLR 171 (229)
T TIGR01675 156 NLINAGFTGW--KHLILR 171 (229)
T ss_pred HHHHcCCCCc--Ceeeec
Confidence 8999998863 555543
No 85
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.22 E-value=3.3e-06 Score=60.87 Aligned_cols=51 Identities=31% Similarity=0.428 Sum_probs=41.6
Q ss_pred EEEeccCcccCCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480 33 WLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (118)
Q Consensus 33 ~~~D~DGtL~~~~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~ 85 (118)
+++|+||||+... .+-+.+.++|++|+++|++++++|+++. ..+...++.+
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~--~~~~~~~~~~ 54 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSL--AEIKELLKQL 54 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHhC
Confidence 7899999999764 4679999999999999999999998754 3455566553
No 86
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.21 E-value=3.4e-06 Score=71.72 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=48.6
Q ss_pred cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
|..+.+++|+||||++... ..+.+.++|++|+++|++++++|+++. ..+...++.+++.
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~--~~i~~l~~~Lgl~ 473 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTM--GEQDLYRNELGIK 473 (694)
T ss_pred ceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence 4588999999999998654 567889999999999999999998653 4566677778764
No 87
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.20 E-value=1.8e-06 Score=64.47 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
....++||+.++|+.|+++|++++|+||+++ ..+...|+.+|+..++||.+++++++
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~--~~~~~~l~~~gl~~~f~d~ii~~~~~ 152 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTR--EMMDVVAPEAALQGYRPDYNVTTDDV 152 (253)
T ss_pred hcCccCCCHHHHHHHHHHCCCeEEEECCCcH--HHHHHHHHHHHhcCCCCceEEccccC
Confidence 3457899999999999999999999999864 34667889999988734888888764
No 88
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.18 E-value=5.5e-06 Score=59.63 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=40.6
Q ss_pred CcEEEEeccCcccCC--------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480 30 FKAWLLDQFGVLHDG--------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~--------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~ 83 (118)
.+.++||+|+|||.. ..++|++.++|++|+++|++++++|.++.. +.+.+.|+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P-~~A~~~L~ 81 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP-DWARELLK 81 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H-HHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh-HHHHHHHH
Confidence 578999999999862 035899999999999999999999965432 45678899
Q ss_pred hCCCC
Q 033480 84 SLGFD 88 (118)
Q Consensus 84 ~~gi~ 88 (118)
.+++.
T Consensus 82 ~l~i~ 86 (169)
T PF12689_consen 82 LLEID 86 (169)
T ss_dssp HTT-C
T ss_pred hcCCC
Confidence 99998
No 89
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.16 E-value=3.5e-06 Score=60.76 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=46.1
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
..++||+.++|+.|+++|++++|+||+++ ..+...++++|+..+ |+.++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~ 136 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPT--PLARPLLELLGLAKY-FSVLIGGDS 136 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCcHhh-CcEEEecCC
Confidence 46899999999999999999999999855 346688899999988 799998865
No 90
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.15 E-value=3e-06 Score=62.72 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=49.0
Q ss_pred EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
+++|+||||+++...++...+.++ ++++|++++++|++ +...+...++.+++..+ +.+++.+.+
T Consensus 2 i~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaTGR--~~~~v~~~~~~l~l~~~--~~~I~~nGa 65 (236)
T TIGR02471 2 IITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIATGR--SVESAKSRYAKLNLPSP--DVLIARVGT 65 (236)
T ss_pred eEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEeCC--CHHHHHHHHHhCCCCCC--CEEEECCCc
Confidence 789999999987766666667776 68899999999975 55668888888988632 556655544
No 91
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.15 E-value=3.3e-06 Score=61.04 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=46.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
...++||+.++|++|+++|++++|+||+++. .+...++.+|+..+ |+.++++++
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~ 126 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGP--RARSLLEALGLLPL-FDHVIGSDE 126 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHHHcCChhh-eeeEEecCc
Confidence 4578999999999999999999999998653 35678899999988 799998765
No 92
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.14 E-value=1.9e-06 Score=64.52 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=54.1
Q ss_pred CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHH
Q 033480 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTID 80 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~ 80 (118)
+..+++||+|+|++.+ ..++||+.++++.++++|+.|+++||++.. .....+
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~ 150 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK 150 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence 6889999999998653 246899999999999999999999998743 466778
Q ss_pred HHHhCCCCCcCCCcee
Q 033480 81 KLKSLGFDPSLFAGAI 96 (118)
Q Consensus 81 ~L~~~gi~~~~fd~ii 96 (118)
.|+..|+... +.++
T Consensus 151 nL~~~G~~~~--~~l~ 164 (229)
T PF03767_consen 151 NLKKAGFPGW--DHLI 164 (229)
T ss_dssp HHHHHTTSTB--SCGE
T ss_pred HHHHcCCCcc--chhc
Confidence 9999998753 4554
No 93
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.13 E-value=4.8e-06 Score=62.20 Aligned_cols=63 Identities=16% Similarity=0.023 Sum_probs=48.4
Q ss_pred EEEEeccCcccC---CC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480 32 AWLLDQFGVLHD---GK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 32 ~~~~D~DGtL~~---~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits 98 (118)
.++.|+||||++ +. +..|...+.+++++++|+.++++|++ +...+...++.+++..+ +.+|+.
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR--~~~~~~~~~~~~~~~~p--~~~I~~ 69 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGR--SPHSYKELQKQKPLLTP--DIWVTS 69 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCC--CHHHHHHHHhcCCCCCC--CEEEEc
Confidence 578999999995 33 45799999999999999999999975 44556677777887643 445543
No 94
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.12 E-value=6.7e-06 Score=62.59 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=43.1
Q ss_pred CcEEEEeccCcccC------CCccCccHHHHHHHHHH-CCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 30 FKAWLLDQFGVLHD------GKKPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 30 ~~~~~~D~DGtL~~------~~~~~pga~e~L~~Lk~-~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
-..+++|+||||++ ...+.|.+.+.|+.|++ .|+.++|+|+++ ...+.+.++.++
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~--~~~~~~~~~~~~ 75 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRS--MVELDALAKPYR 75 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHhcCccc
Confidence 46899999999998 34567999999999998 799999999864 344555555444
No 95
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.10 E-value=5.4e-06 Score=56.86 Aligned_cols=56 Identities=36% Similarity=0.583 Sum_probs=48.1
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
....++||+.++|+.|+++|++++++||+++ ..+...++.+|+..+ |+.++++++.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~--~~~~~~l~~~~~~~~-f~~i~~~~~~ 129 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR--ERIERVLERLGLDDY-FDEIISSDDV 129 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEH--HHHHHHHHHTTHGGG-CSEEEEGGGS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCc--ccccccccccccccc-cccccccchh
Confidence 4557899999999999999999999999853 456789999999988 7999999843
No 96
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.09 E-value=3.5e-06 Score=59.78 Aligned_cols=59 Identities=34% Similarity=0.464 Sum_probs=41.7
Q ss_pred cEEEEeccCcccCCC------------ccC-ccHHHHHHHHHHCCCcEEEEeCCC---C----C-----hHHHHHHHHhC
Q 033480 31 KAWLLDQFGVLHDGK------------KPY-PGAISTLEMLATTGAKMVVISNSS---R----R-----ASTTIDKLKSL 85 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~------------~~~-pga~e~L~~Lk~~Gi~v~I~TN~~---r----~-----~~~~~~~L~~~ 85 (118)
|.++||+||||.... .++ |++.+.|++|++.|+.++|+||.+ + . ...+...++.+
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l 80 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL 80 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence 568999999997642 234 689999999999999999999974 2 1 12345666778
Q ss_pred CCCC
Q 033480 86 GFDP 89 (118)
Q Consensus 86 gi~~ 89 (118)
+++.
T Consensus 81 ~ip~ 84 (159)
T PF08645_consen 81 GIPI 84 (159)
T ss_dssp TS-E
T ss_pred CCce
Confidence 8764
No 97
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.08 E-value=1.4e-05 Score=61.49 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCcEEEEeccCcccCC----------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHH
Q 033480 29 RFKAWLLDQFGVLHDG----------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTI 79 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~----------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~ 79 (118)
...+++||+|+|++.+ .+++|++.++.+.|+++|++++++||++.. .+...
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 5689999999998721 245899999999999999999999998743 35567
Q ss_pred HHHHhCCCCCcCCCceeeh
Q 033480 80 DKLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 80 ~~L~~~gi~~~~fd~iits 98 (118)
+.|++.|++.+ +.++..
T Consensus 180 ~NL~kaGy~~~--~~LiLR 196 (275)
T TIGR01680 180 ANLKKAGYHTW--EKLILK 196 (275)
T ss_pred HHHHHcCCCCc--ceeeec
Confidence 88899999753 555543
No 98
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.08 E-value=5.3e-06 Score=60.36 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=46.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC--CcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD--PSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~--~~~fd~iits~~v 101 (118)
..++||+.++|+.|+++|++++|+||+++ ..+...|+.+|+. .+ |+.+++++++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~--~~~~~~l~~~~l~~~~~-f~~i~~~~~~ 141 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDR--DTAERLLEKLGWTVGDD-VDAVVCPSDV 141 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHHhhhhhhcc-CCEEEcCCcC
Confidence 36899999999999999999999999865 3466888999998 77 7999998774
No 99
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.08 E-value=8.6e-06 Score=57.42 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=44.3
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|+.|+++|++++|+||+.. ....|+++|+..+ |+.+++++++
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~----~~~~l~~~~l~~~-f~~~~~~~~~ 137 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN----APTVLEKLGLIDY-FDAIVDPAEI 137 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc----HHHHHHhcCcHhh-CcEEEehhhc
Confidence 46899999999999999999999998642 2357899999988 7999988764
No 100
>PRK08238 hypothetical protein; Validated
Probab=98.08 E-value=9.1e-06 Score=66.85 Aligned_cols=49 Identities=22% Similarity=0.301 Sum_probs=40.1
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..||+.|.|++++++|++++++||+++. .+...++.+|+ ||.++++++.
T Consensus 73 ~~pga~e~L~~lk~~G~~v~LaTas~~~--~a~~i~~~lGl----Fd~Vigsd~~ 121 (479)
T PRK08238 73 YNEEVLDYLRAERAAGRKLVLATASDER--LAQAVAAHLGL----FDGVFASDGT 121 (479)
T ss_pred CChhHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHcCC----CCEEEeCCCc
Confidence 3599999999999999999999998653 35577788887 5888887653
No 101
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=57.82 Aligned_cols=55 Identities=11% Similarity=0.191 Sum_probs=36.0
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc---CCCceeehHH
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS---LFAGAITSGE 100 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~---~fd~iits~~ 100 (118)
....++||+.++|++|+++ ++++++||.+.... ...++.+++..+ .|+.++++++
T Consensus 71 ~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~--~~~~~~~~l~~~f~~~f~~i~~~~~ 128 (197)
T PHA02597 71 RYLSAYDDALDVINKLKED-YDFVAVTALGDSID--ALLNRQFNLNALFPGAFSEVLMCGH 128 (197)
T ss_pred HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchh--HHHHhhCCHHHhCCCcccEEEEecc
Confidence 3456899999999999987 56888888754332 234455555432 1566766554
No 102
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.05 E-value=6.4e-06 Score=59.25 Aligned_cols=52 Identities=37% Similarity=0.397 Sum_probs=44.7
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
.++||+.++|+.|+++|++++|+||+++. +...++.+|+..+ ||.+++++++
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~---~~~~l~~~~l~~~-fd~i~~s~~~ 156 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR---LRGLLEALGLLEY-FDFVVTSYEV 156 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHCCcHHh-cceEEeeccc
Confidence 57899999999999999999999997542 4577899999888 7999988764
No 103
>PRK09449 dUMP phosphatase; Provisional
Probab=98.05 E-value=4e-06 Score=61.18 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=45.0
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|+.|+ +|++++|+||+++. .....|+.+|+..+ ||.+++++++
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~ 146 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTE--LQQVRLERTGLRDY-FDLLVISEQV 146 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHH--HHHHHHHhCChHHH-cCEEEEECcc
Confidence 468999999999999 57999999998653 35578899999998 7999998764
No 104
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.04 E-value=1.5e-05 Score=56.52 Aligned_cols=71 Identities=20% Similarity=0.071 Sum_probs=53.3
Q ss_pred CCcEEEEeccCcccCCC------------------------------------ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 29 RFKAWLLDQFGVLHDGK------------------------------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~------------------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
+...+++|+|.||.+.. .+.||+.++|++|.+. +.++|+||++
T Consensus 5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~ 83 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGT 83 (156)
T ss_pred CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCc
Confidence 66778899999887632 1369999999999855 9999999987
Q ss_pred CChHHHHHHHHhCCCCCcCC-CceeehHHHH
Q 033480 73 RRASTTIDKLKSLGFDPSLF-AGAITSGELT 102 (118)
Q Consensus 73 r~~~~~~~~L~~~gi~~~~f-d~iits~~v~ 102 (118)
+.. +...++.++.....| +.+++.++..
T Consensus 84 ~~y--A~~vl~~ldp~~~~F~~ri~~rd~~~ 112 (156)
T TIGR02250 84 RAY--AQAIAKLIDPDGKYFGDRIISRDESG 112 (156)
T ss_pred HHH--HHHHHHHhCcCCCeeccEEEEeccCC
Confidence 643 457788898884227 5677766543
No 105
>PLN02423 phosphomannomutase
Probab=98.03 E-value=7.9e-06 Score=61.44 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=40.2
Q ss_pred cCCcEEE-EeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 28 RRFKAWL-LDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 28 ~~~~~~~-~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
++++.++ +|+||||+++.. +-|...++|++|+++ +.++++|++ ....+...+..
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTGR--~~~~~~~~~~~ 59 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGGS--DLSKISEQLGK 59 (245)
T ss_pred CccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECCc--CHHHHHHHhcc
Confidence 3566555 999999998876 457889999999976 999999976 33334444443
No 106
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.03 E-value=1.6e-05 Score=58.37 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=34.0
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
...+.||+.++|++|+++|++++|+||+.+. .+...|+.+ +.
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~--~i~~il~~~-~~ 113 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDF--FVYPLLQGL-IP 113 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHH--HHHHHHHHh-CC
Confidence 3467899999999999999999999998653 355677776 53
No 107
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.03 E-value=5.7e-06 Score=59.94 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=43.1
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|+.|+++|++++|+||++.........+...++..+ ||.+++|.++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~-fd~v~~s~~~ 148 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMAL-FDAVVESCLE 148 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhh-CCEEEEeeec
Confidence 4679999999999999999999999986432222334455778777 7999988654
No 108
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.01 E-value=1.1e-05 Score=56.86 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=45.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
...++||+.++|+.|+++|++++++||+ ..+...|+.+|+..+ |+.++++++.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~----~~~~~~l~~~~l~~~-f~~v~~~~~~ 138 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS----KNADRILAKLGLTDY-FDAIVDADEV 138 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc----hhHHHHHHHcChHHH-CCEeeehhhC
Confidence 3578999999999999999999999987 235678899999998 7999988754
No 109
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.01 E-value=2.6e-05 Score=56.11 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=48.4
Q ss_pred hcCCcEEEEeccCcccC--CCccCccHHHHHHHHHHCCCc--EEEEeCCCC-----ChHHHHHHHHhCCCCC
Q 033480 27 TRRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATTGAK--MVVISNSSR-----RASTTIDKLKSLGFDP 89 (118)
Q Consensus 27 ~~~~~~~~~D~DGtL~~--~~~~~pga~e~L~~Lk~~Gi~--v~I~TN~~r-----~~~~~~~~L~~~gi~~ 89 (118)
.+++++++||.|.||.. ..++.|...+.++++++.+.. ++|+||+.. ..+.+...-+.+|++.
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence 36899999999999964 445789999999999998765 999999841 1233444446699874
No 110
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.01 E-value=7.1e-06 Score=57.45 Aligned_cols=52 Identities=35% Similarity=0.530 Sum_probs=42.4
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
..++||+.++|+.|+++|++++++||+++.. ...+.++|+..+ |+.++++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~-f~~i~~~~~ 135 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDL-FDVVIFSGD 135 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHH-CCEEEEcCC
Confidence 4678999999999999999999999986533 344455999888 799998754
No 111
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.97 E-value=1.1e-05 Score=65.52 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=47.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|++|+++|++++|+||+++ ..+...++.+|+..+ |+.+++++++
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~--~~~~~~l~~~~l~~~-f~~i~~~d~v 382 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLT--EYLRAIVSYYDLDQW-VTETFSIEQI 382 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCch--HHHHHHHHHCCcHhh-cceeEecCCC
Confidence 46799999999999999999999999865 346788999999998 7999998764
No 112
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.96 E-value=1.1e-05 Score=60.84 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=44.7
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
...++||+.++|+.|+++|++++|+||+++ ..+...++.+++..++||.+++++++
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~--~~~~~~l~~~~l~~~~~d~i~~~~~~ 154 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTR--EMMDVVVPLAAAQGYRPDHVVTTDDV 154 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcH--HHHHHHHHHHhhcCCCceEEEcCCcC
Confidence 346899999999999999999999999865 34557778888776534888888753
No 113
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.95 E-value=1.3e-05 Score=57.75 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=45.1
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
++.+++.++|+.|+++|++++|+||+++ ..+...|+.+|+..+ |+.+++++++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~-f~~~~~~~~~ 158 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPR--KDAAKFLTTHGLEIL-FPVQIWMEDC 158 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHcCchhh-CCEEEeecCC
Confidence 4567789999999999999999999855 446788999999988 7999988764
No 114
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.88 E-value=3.7e-05 Score=58.37 Aligned_cols=62 Identities=34% Similarity=0.462 Sum_probs=51.7
Q ss_pred CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCCh--HHHH
Q 033480 29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTI 79 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~--~~~~ 79 (118)
+.+++++|+|.|++++ ..++||+.||++..-++|..|+.+||+.+.. ....
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~ 157 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI 157 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence 4669999999999875 2579999999999999999999999987443 3567
Q ss_pred HHHHhCCCCCc
Q 033480 80 DKLKSLGFDPS 90 (118)
Q Consensus 80 ~~L~~~gi~~~ 90 (118)
+.|+..|++..
T Consensus 158 ~nLk~~g~~~~ 168 (274)
T COG2503 158 ENLKSEGLPQV 168 (274)
T ss_pred HHHHHcCcccc
Confidence 88888898754
No 115
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.86 E-value=4.4e-05 Score=54.12 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=51.6
Q ss_pred cEEEEeccCcccCCCc-------------------------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480 31 KAWLLDQFGVLHDGKK-------------------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~~-------------------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~ 85 (118)
+.+++|+|+||.+... .=||+.|+|++|.+. +.++|.|++++.. +...++.+
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y--A~~il~~l 78 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY--ADPVLDIL 78 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH--HHHHHHHH
Confidence 5689999999975321 128999999999887 9999999986543 55788888
Q ss_pred CCCC-cCCCceeehHHH
Q 033480 86 GFDP-SLFAGAITSGEL 101 (118)
Q Consensus 86 gi~~-~~fd~iits~~v 101 (118)
+... + |+.+++.+..
T Consensus 79 dp~~~~-f~~~l~r~~~ 94 (162)
T TIGR02251 79 DRGGKV-ISRRLYRESC 94 (162)
T ss_pred CcCCCE-EeEEEEcccc
Confidence 8775 5 6888876654
No 116
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.83 E-value=5.9e-05 Score=53.75 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=46.6
Q ss_pred EEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHHHHHhC-----CCCCcCCCc
Q 033480 33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSL-----GFDPSLFAG 94 (118)
Q Consensus 33 ~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~~L~~~-----gi~~~~fd~ 94 (118)
+++|+||||+..+ ..-||+.++.+.++++||++.-+|+.+- ........|... +++. .-
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~---Gp 78 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD---GP 78 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC---CC
Confidence 7899999999874 2459999999999999999999998762 223444555555 6653 33
Q ss_pred eeeh
Q 033480 95 AITS 98 (118)
Q Consensus 95 iits 98 (118)
++++
T Consensus 79 v~~s 82 (157)
T PF08235_consen 79 VLLS 82 (157)
T ss_pred EEEC
Confidence 4555
No 117
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.79 E-value=4.6e-05 Score=55.96 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=35.8
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA 93 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd 93 (118)
+++||+.++|+.+++++ +++|+||+.+ ..+...++.+|++.. |.
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~--~~~~~il~~lgi~~~-~a 111 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFY--EFSQPLMRQLGFPTL-LC 111 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChH--HHHHHHHHHcCCchh-hc
Confidence 57899999999999975 9999999754 345677889999865 54
No 118
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.78 E-value=6.7e-05 Score=56.52 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
....+|.|+||||+...--...+.+.+.+|+..|++++++|++++ .++...-+.+|++..
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~--aE~~~l~~~l~v~~~ 65 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSSKTR--AEMLYLQKSLGVQGL 65 (274)
T ss_pred cceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEeccchH--HHHHHHHHhcCCCCC
Confidence 467899999999999666667788999999999999999998754 344444466888743
No 119
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.78 E-value=3.5e-05 Score=55.78 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=45.6
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|++|+++ ++++++||+++ ..+...++.+|+..+ ||.++++++.
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~--~~~~~~l~~~~l~~~-fd~i~~~~~~ 148 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVR--ETQYKRLRKSGLFPF-FDDIFVSEDA 148 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCch--HHHHHHHHHCCcHhh-cCEEEEcCcc
Confidence 46899999999999999 99999999864 345678899999998 7999988763
No 120
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.77 E-value=9e-05 Score=58.14 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.6
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
++.||+.++|+.|+++|++++|+||+.... ....++.+|++.
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~--~~~l~~~Lgld~ 222 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYF--ADYLRDKLRLDA 222 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchh--HHHHHHHcCCCe
Confidence 357999999999999999999999976432 335556688753
No 121
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.76 E-value=3.4e-05 Score=56.03 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=46.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT 102 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~ 102 (118)
.+++|++.+.|++|+++ ++++++||+.+. .....|+.+|+..+ ||.+++|+++.
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~--~~~~~l~~~gl~~~-Fd~v~~s~~~g 151 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARP--HQERKLRQLGLLDY-FDAVFISEDVG 151 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChH--HHHHHHHHcCChhh-hheEEEecccc
Confidence 46789999999999988 999999997543 35689999999998 79999999886
No 122
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.74 E-value=2.7e-05 Score=56.15 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=41.3
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh-CCCCCcCCCceeehHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGEL 101 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~-~gi~~~~fd~iits~~v 101 (118)
.++||+.++|+.|+++|++++|+||+++.. +...+.. .++..+ ||.+++|+++
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~--~~~~~~~~~~l~~~-fd~v~~s~~~ 137 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH--TTFWPEEYPEVRAA-ADHIYLSQDL 137 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhh--HHHHHhhchhHHHh-cCEEEEeccc
Confidence 478999999999999999999999986532 2233333 467777 7999998774
No 123
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.69 E-value=9.4e-05 Score=57.25 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=61.5
Q ss_pred CCcEEEEeccCcccCCCc----cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~----~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
....++||+|.||..+.. +.|.+.+.|.+|+++|--+++=|.+++.+ +...|+.+++..+ ||.+++.+....+
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH--V~~sl~~~~L~~~-Fd~ii~~G~~~~~ 197 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH--VRHSLKELKLEGY-FDIIICGGNKAGE 197 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH--HHHHHHHhCCccc-cEEEEeCCccCCc
Confidence 577899999999997754 46999999999999999889998876654 6789999999988 8999988766544
No 124
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.67 E-value=0.00011 Score=51.24 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=50.8
Q ss_pred cEEEEeccCcccCCC-------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480 31 KAWLLDQFGVLHDGK-------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~-------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~ 85 (118)
++++||.|||++... +++|.++++++++++.|+-+..+|=+- .....+.|+.+
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~--~~kA~~aLral 78 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF--EDKAIKALRAL 78 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc--hHHHHHHHHHh
Confidence 368999999998752 357899999999999998776666442 24467899999
Q ss_pred CCCCcCCCceeeh
Q 033480 86 GFDPSLFAGAITS 98 (118)
Q Consensus 86 gi~~~~fd~iits 98 (118)
++..+ |+.++.-
T Consensus 79 ~~~~y-Fhy~Vie 90 (164)
T COG4996 79 DLLQY-FHYIVIE 90 (164)
T ss_pred chhhh-EEEEEec
Confidence 99999 7877654
No 125
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.65 E-value=8.8e-05 Score=52.17 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=43.2
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits 98 (118)
..+.||+.++|+.|+++|++++|+||+.+ ..+...++.+|+..+ |+.++++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGND--FFIDPVLEGIGEKDV-FIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcH--HHHHHHHHHcCChhh-eeEEecc
Confidence 57889999999999999999999999854 345677888999888 7888864
No 126
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.59 E-value=8.3e-05 Score=51.09 Aligned_cols=53 Identities=28% Similarity=0.271 Sum_probs=41.2
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
+...+||+.++|+.|+++|++++|+||+++. .+...++.+ +..+ |+.++++++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~--~~~~~~~~~-l~~~-f~~i~~~~~ 114 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLR--AQKLLLRKH-LGDY-FDLILGSDE 114 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchH--HHHHHHHHH-HHhc-CcEEEecCC
Confidence 3456799999999999999999999998654 345666666 6666 688887664
No 127
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=97.58 E-value=8e-05 Score=59.02 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=48.1
Q ss_pred eccCcccCCC--------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC-C-------CCCcCCCceeehH
Q 033480 36 DQFGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-G-------FDPSLFAGAITSG 99 (118)
Q Consensus 36 D~DGtL~~~~--------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~-g-------i~~~~fd~iits~ 99 (118)
..+|++.+.. .+.||+.++|++|+++|++++|+||+++. .+...|+.+ | +..+ ||.||++.
T Consensus 166 h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~--yt~~im~~l~g~~~~~~~w~~y-FD~IIt~a 242 (343)
T TIGR02244 166 HRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYD--YTDKGMKYLLGPFLGEHDWRDY-FDVVIVDA 242 (343)
T ss_pred cccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHhhCCcccccchHhh-CcEEEeCC
Confidence 3567765432 45899999999999999999999998653 355677775 6 8888 79998876
Q ss_pred H
Q 033480 100 E 100 (118)
Q Consensus 100 ~ 100 (118)
.
T Consensus 243 ~ 243 (343)
T TIGR02244 243 R 243 (343)
T ss_pred C
Confidence 4
No 128
>PLN02811 hydrolase
Probab=97.58 E-value=7.6e-05 Score=54.70 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=41.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHH-HHHhCCCCCcCCCceeehH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~-~L~~~gi~~~~fd~iits~ 99 (118)
...++||+.++|+.|+++|++++|+||+++.. +.. .++..++..+ |+.+++++
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~-f~~i~~~~ 129 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSL-MHHVVTGD 129 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhh-CCEEEECC
Confidence 45679999999999999999999999986532 223 3334567777 79999988
No 129
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00034 Score=51.83 Aligned_cols=43 Identities=30% Similarity=0.342 Sum_probs=34.3
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.||+.+.+++++++|.+++|+|++.. ..+....+.+|++..
T Consensus 77 ~l~~ga~elv~~lk~~G~~v~iiSgg~~--~lv~~ia~~lg~d~~ 119 (212)
T COG0560 77 RLTPGAEELVAALKAAGAKVVIISGGFT--FLVEPIAERLGIDYV 119 (212)
T ss_pred cCCccHHHHHHHHHHCCCEEEEEcCChH--HHHHHHHHHhCCchh
Confidence 4579999999999999999999998743 334556677888755
No 130
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.46 E-value=0.00046 Score=59.21 Aligned_cols=66 Identities=21% Similarity=0.132 Sum_probs=47.3
Q ss_pred hhHHHHHhhcCCcEEEEeccCcccCCC------ccCccHHHHHHHHHH-CCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 19 NGLRHIAETRRFKAWLLDQFGVLHDGK------KPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~-~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
+.+.+-..+.+.+.+++|+||||+... .+-+.+.++|++|.+ .|+.++|+|+++. ..+...+..++
T Consensus 481 ~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~--~~l~~~~~~~~ 553 (726)
T PRK14501 481 EEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDR--DTLERWFGDLP 553 (726)
T ss_pred HHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCH--HHHHHHhCCCC
Confidence 344333333468999999999999732 356899999999999 4999999998643 44555555443
No 131
>PLN03017 trehalose-phosphatase
Probab=97.40 E-value=0.00026 Score=56.58 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=36.2
Q ss_pred CCcEEEEeccCccc---C--CC-ccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 29 RFKAWLLDQFGVLH---D--GK-KPYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 29 ~~~~~~~D~DGtL~---~--~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
+...+|+|+||||. . +. .+.++..++|++|. ++++++|+|+++.
T Consensus 110 k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~ 159 (366)
T PLN03017 110 KQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI 159 (366)
T ss_pred CCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCH
Confidence 45778899999999 3 22 46799999999998 7799999998653
No 132
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.38 E-value=0.00013 Score=51.72 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=43.0
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
...++||+.++|++|+ ++++|+||+++ ..+...++.+|+..+ ||.+++++++
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~--~~~~~~l~~~gl~~~-fd~i~~~~~~ 133 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDR--AHARRALNRLGIEDC-FDGIFCFDTA 133 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCH--HHHHHHHHHcCcHhh-hCeEEEeecc
Confidence 3457899999999997 58999999865 346688899999988 7999988764
No 133
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.28 E-value=0.00023 Score=52.97 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=39.7
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
..++||+.++|++|++. ++++++||++.. ++.+|+..+ ||.+++++++
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-------~~~~gl~~~-fd~i~~~~~~ 159 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-------PELFGLGDY-FEFVLRAGPH 159 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-------HHHCCcHHh-hceeEecccC
Confidence 45789999999999875 999999997542 477899998 7999988764
No 134
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.26 E-value=0.00018 Score=50.05 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=43.8
Q ss_pred cEEEEeccCcccCCCc--------------------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC-CC
Q 033480 31 KAWLLDQFGVLHDGKK--------------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF-DP 89 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~~--------------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi-~~ 89 (118)
+.+++|+||||+.... .=||+.+||+++.+. +.++|.|++++.. +...++.+.. ..
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y--a~~v~~~ldp~~~ 77 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY--AEPVLDALDPNGK 77 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH--HHHHHHHHTTTTS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh--hhHHHHhhhhhcc
Confidence 4789999999976431 249999999999554 9999999986433 4456666665 23
Q ss_pred cCCCceeehHH
Q 033480 90 SLFAGAITSGE 100 (118)
Q Consensus 90 ~~fd~iits~~ 100 (118)
+ |+.++....
T Consensus 78 ~-~~~~~~r~~ 87 (159)
T PF03031_consen 78 L-FSRRLYRDD 87 (159)
T ss_dssp S-EEEEEEGGG
T ss_pred c-ccccccccc
Confidence 3 577775543
No 135
>PLN02151 trehalose-phosphatase
Probab=97.21 E-value=0.00088 Score=53.39 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCcEEEEeccCccc----CC--CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480 29 RFKAWLLDQFGVLH----DG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (118)
Q Consensus 29 ~~~~~~~D~DGtL~----~~--~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~ 83 (118)
+...+|+|+||||. +. ..+.|++.++|+.|.+ +.+++|+|+++. ..+.+.+.
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~--~~l~~~~~ 154 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCR--EKVSSFVK 154 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCH--HHHHHHcC
Confidence 35688899999998 22 2467999999999984 579999998643 34445543
No 136
>PLN02382 probable sucrose-phosphatase
Probab=97.20 E-value=0.0013 Score=53.19 Aligned_cols=67 Identities=10% Similarity=-0.133 Sum_probs=46.0
Q ss_pred CCcEEEEeccCcccCCC--c-cCccH-HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480 29 RFKAWLLDQFGVLHDGK--K-PYPGA-ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~--~-~~pga-~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~ 99 (118)
+.-.++.|+||||+++. + .-+-. .+.+++++++|+.++++|++ +...+...++.+++..+ +.+|++.
T Consensus 8 ~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR--~~~~~~~l~~~~~l~~p--~~~I~~n 78 (413)
T PLN02382 8 PRLMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTGR--SPTLYKELRKEKPLLTP--DITIMSV 78 (413)
T ss_pred CCEEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcCC--CHHHHHHHHHhCCCCCC--CEEEEcC
Confidence 34467889999999763 2 23233 44448899999999999975 44556677777887654 4456553
No 137
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.19 E-value=0.0013 Score=57.65 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=43.2
Q ss_pred cCCcEEEEeccCcccCCC----ccCccHHHHHHHH-HHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 28 RRFKAWLLDQFGVLHDGK----KPYPGAISTLEML-ATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~----~~~pga~e~L~~L-k~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.+.+.+++|+||||.... .+.|+..++|++| +..|..++|+|+.++ ..+.+.+..
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~--~~L~~~f~~ 653 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSR--KTLADWFSP 653 (854)
T ss_pred hcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH--HHHHHHhCC
Confidence 468999999999999654 5668999999998 667999999997643 445555543
No 138
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.16 E-value=0.0009 Score=49.87 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=34.8
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC---CCCCcCCCcee
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL---GFDPSLFAGAI 96 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~---gi~~~~fd~ii 96 (118)
.++||+.++|++|+++|++++|+||+++.. ....++.. ++..+ |+..+
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~--~~~~~~~~~~~~L~~~-f~~~f 145 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPA--QKLLFGHSDAGNLTPY-FSGYF 145 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHhhccccchhhh-cceEE
Confidence 589999999999999999999999986532 33445554 45444 34433
No 139
>PTZ00445 p36-lilke protein; Provisional
Probab=97.12 E-value=0.00085 Score=50.11 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=46.4
Q ss_pred cchhhHHHHHhhcCCcEEEEeccCcccC-----CCc-----------cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 16 QTLNGLRHIAETRRFKAWLLDQFGVLHD-----GKK-----------PYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~D~DGtL~~-----~~~-----------~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
..++.+.+.+.+.+++.+++|+|-||.. ..+ +-|+..+++++|++.|++++|+|=++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd 101 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSD 101 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence 4456777778878999999999999876 222 34778889999999999999999764
No 140
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.12 E-value=0.00037 Score=52.49 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=43.0
Q ss_pred CcEEEEeccCcccCCC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 30 FKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
...++.|+||||+.+. .......+.++...+.++.++++|+ |+...+.+.++..+++.+ |.+|++..
T Consensus 2 ~~ll~sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TG--Rs~~~~~~~~~~~~l~~P--d~~I~svG 69 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTG--RSLESVLRLLREYNLPQP--DYIITSVG 69 (247)
T ss_dssp SEEEEEETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-S--S-HHHHHHHHHHCT-EE---SEEEETTT
T ss_pred CEEEEEECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECC--CCHHHHHHHHHhCCCCCC--CEEEecCC
Confidence 4578999999999322 2233334444423356778888886 466678889999998653 88998854
No 141
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.11 E-value=0.0024 Score=48.18 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=42.9
Q ss_pred CCCccCccHHHHHHHH--HHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480 43 DGKKPYPGAISTLEML--ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 43 ~~~~~~pga~e~L~~L--k~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits 98 (118)
...++.||..++++.+ ++.|..++|+|.+. .-.+...|++.|+... |+.|+|-
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaN--s~fI~~iL~~~gl~~~-f~~I~TN 122 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDAN--SFFIETILEHHGLRDC-FSEIFTN 122 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCc--HhHHHHHHHhCCCccc-cceEEeC
Confidence 3456789999999999 45799999999873 3457789999999987 7888765
No 142
>PLN02580 trehalose-phosphatase
Probab=97.05 E-value=0.0015 Score=52.68 Aligned_cols=54 Identities=20% Similarity=0.099 Sum_probs=40.4
Q ss_pred cCCcEEEEeccCcccCC------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 28 RRFKAWLLDQFGVLHDG------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.+...+|+|+||||..- ..+-|++.++|+.|.+. .+++|+|++++ ..+.+.+..
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~--~~L~~~l~~ 176 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSR--DKVYELVGL 176 (384)
T ss_pred cCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCH--HHHHHHhCC
Confidence 34678899999999642 24579999999999887 58999997643 445555543
No 143
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.03 E-value=0.0012 Score=50.73 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.6
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
.++||+.++|+.|+++|++++|+||+++ ..+...++.++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~--~~~~~~l~~~~ 182 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNE--KAVSKIVNTLL 182 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhc
Confidence 6899999999999999999999999854 33445666553
No 144
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.02 E-value=0.0013 Score=49.19 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=35.0
Q ss_pred CCcEEEEeccCcccCCC------ccCccHHHHHHHHHHC-CCcEEEEeCCC
Q 033480 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATT-GAKMVVISNSS 72 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~-Gi~v~I~TN~~ 72 (118)
+.+.++||+||||..-. .+.|++.+.|+.|.+. +..++|+|+.+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 56789999999998632 3568999999999776 45678999864
No 145
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=96.99 E-value=0.0021 Score=53.52 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=53.4
Q ss_pred cCCcEEEEeccCccc----CCCccCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480 28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii 96 (118)
...+.+++..||++. ....+.||+.++|++|+++| ++++++||.++ ..+...++.+|++.+ |..+.
T Consensus 362 ~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~--~~a~~i~~~lgi~~~-f~~~~ 432 (556)
T TIGR01525 362 QGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNR--SAAEAVAAELGIDEV-HAELL 432 (556)
T ss_pred CCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCH--HHHHHHHHHhCCCee-eccCC
Confidence 356778888888654 35678999999999999999 99999999754 346688899999887 66654
No 146
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.95 E-value=0.0029 Score=48.86 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
...+.||+.+++++|+++|++++|+|++.+ ..+...|+.+|+...
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~--~~Ie~vL~~lgl~~~ 163 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIG--NVLEEVLRQAGVYHP 163 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcH--HHHHHHHHHcCCCCc
Confidence 456789999999999999999999998755 346688888888543
No 147
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=96.79 E-value=0.00054 Score=47.96 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=39.6
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
....++||+.++|+ +++|+||+++. .+...++++|+..+ ||.+++++++
T Consensus 87 ~~~~~~~g~~~~L~-------~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~ 135 (175)
T TIGR01493 87 KNLPPWPDSAAALA-------RVAILSNASHW--AFDQFAQQAGLPWY-FDRAFSVDTV 135 (175)
T ss_pred hcCCCCCchHHHHH-------HHhhhhCCCHH--HHHHHHHHCCCHHH-HhhhccHhhc
Confidence 34568999999998 47999998653 45678899999998 7999988875
No 148
>PRK11590 hypothetical protein; Provisional
Probab=96.78 E-value=0.0033 Score=45.90 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=37.6
Q ss_pred ccCccHHHHH-HHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480 46 KPYPGAISTL-EMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 46 ~~~pga~e~L-~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~ 99 (118)
.++||+.+.| +.++++|++++|+||+++. .+...++.+|+.. .+.++++.
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~--~~~~il~~l~~~~--~~~~i~t~ 145 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQP--LVEQVYFDTPWLP--RVNLIASQ 145 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHH--HHHHHHHHccccc--cCceEEEE
Confidence 5689999999 5788899999999998653 3556778888632 15666554
No 149
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=96.65 E-value=0.004 Score=43.39 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=36.9
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
....+.||+.++++.++++|++++|+|++.+ ..+...++.+|+...
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~--~~i~~~~~~~g~~~~ 115 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFD--FFVEPVAEKLGIDDV 115 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCchh
Confidence 3445679999999999999999999999754 345677788888654
No 150
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=96.56 E-value=0.0047 Score=51.35 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=50.7
Q ss_pred CCcEEEEeccCcc----cCCCccCccHHHHHHHHHHCCC-cEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480 29 RFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (118)
Q Consensus 29 ~~~~~~~D~DGtL----~~~~~~~pga~e~L~~Lk~~Gi-~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit 97 (118)
....+++-.||++ .....+.||+.+.|++|+++|+ +++++||.++ ......++.+|++.+ |..+..
T Consensus 341 ~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~--~~a~~i~~~lgi~~~-f~~~~p 411 (536)
T TIGR01512 341 GKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRR--AVAERVARELGIDEV-HAELLP 411 (536)
T ss_pred CCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCH--HHHHHHHHHcCChhh-hhccCc
Confidence 3455666666644 3456789999999999999999 9999998754 446688899999887 665544
No 151
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.0083 Score=46.13 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=40.3
Q ss_pred cCCcEEEEeccCcccCCC------ccCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHH
Q 033480 28 RRFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLK 83 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~ 83 (118)
.+.+.+|+|+||||.... .+.++..++|++|.++. ..++|+|+. +.+.+...+.
T Consensus 16 a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR--~~~~l~~~~~ 76 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGR--SLAELERLFG 76 (266)
T ss_pred ccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCC--CHHHHHHhcC
Confidence 378999999999997653 35789999999998884 357888864 4444454444
No 152
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.46 E-value=0.013 Score=51.08 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=41.5
Q ss_pred cCCcEEEEeccCcccCC---------CccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHh
Q 033480 28 RRFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.+.+.+|||+||||..- ..+.|++.+.|+.|.+. +..++|+|+. +.+.+.+.+..
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR--~~~~L~~~~~~ 569 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRS--GKDILDKNFGE 569 (797)
T ss_pred ccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCC--CHHHHHHHhCC
Confidence 45689999999999853 23668899999999765 6789999975 44556666654
No 153
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.41 E-value=0.012 Score=52.14 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=42.0
Q ss_pred cCCcEEEEeccCcccCC---------------CccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 28 RRFKAWLLDQFGVLHDG---------------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~---------------~~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
.+.+.+|||+||||..- ..+.|++.+.|+.|.+. +..++|+|+.+ .+.+...+...+
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~--~~~Le~~fg~~~ 661 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD--RSVLDENFGEFD 661 (934)
T ss_pred ccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence 45789999999999752 12558889999999775 67899999764 345666665543
No 154
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=96.37 E-value=0.0039 Score=44.36 Aligned_cols=48 Identities=25% Similarity=0.323 Sum_probs=38.2
Q ss_pred cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 40 VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 40 tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
.+....++.|++.++|+.|+++|++++++|+.++ ..+....+.+|+..
T Consensus 121 ~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~--~~a~~~~~~lgi~~ 168 (215)
T PF00702_consen 121 LFGLRDPLRPGAKEALQELKEAGIKVAILTGDNE--STASAIAKQLGIFD 168 (215)
T ss_dssp EEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEH--HHHHHHHHHTTSCS
T ss_pred EEeecCcchhhhhhhhhhhhccCcceeeeecccc--cccccccccccccc
Confidence 3344567899999999999999999999997533 44667788899853
No 155
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.34 E-value=0.011 Score=43.39 Aligned_cols=56 Identities=23% Similarity=0.120 Sum_probs=43.8
Q ss_pred CCcEEEEeccCcccCCC-------cc-CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 29 RFKAWLLDQFGVLHDGK-------KP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~-------~~-~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
+.+.+++|+|+||.+.. .. =|++.+||+.+.+ .+.++|-|+++... +...+..+++
T Consensus 20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y--a~~~l~~l~~ 83 (195)
T TIGR02245 20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW--IEIKMTELGV 83 (195)
T ss_pred CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH--HHHHHHHhcc
Confidence 67899999999999742 11 3999999999977 59999999876533 4566776664
No 156
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=96.30 E-value=0.0054 Score=43.80 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=35.5
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.++||+.++|+.++++|++++|+||+.+. .+...++.+|++..
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~--~v~~~~~~lg~~~~ 129 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTI--LVKPLARILGIDNA 129 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHcCCcce
Confidence 46899999999999999999999998643 35567788888755
No 157
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=96.27 E-value=0.01 Score=49.66 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=50.5
Q ss_pred CCcEEEEeccCccc----CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480 29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (118)
Q Consensus 29 ~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii 96 (118)
....++++.||++. -...+.||+.++|++|+++|++++++||..+ ..+...++.+|++ + |..+.
T Consensus 384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~--~~a~~ia~~lgi~-~-~~~~~ 451 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNR--KTAKAVAKELGIN-V-RAEVL 451 (562)
T ss_pred CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHcCCc-E-EccCC
Confidence 46778888888663 3567899999999999999999999998754 3466788889997 3 45553
No 158
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=96.13 E-value=0.013 Score=43.07 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.5
Q ss_pred ccCccHHHHHH-HHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 46 KPYPGAISTLE-MLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 46 ~~~pga~e~L~-~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
.++||+.+.|+ .++++|++++|+||+++. .+....+..++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~--~~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQP--LVEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHH--HHHHHHHhccc
Confidence 56899999996 788899999999998643 24455555554
No 159
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.032 Score=41.20 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=30.6
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
.+-||.+++++++++++++++|+|++.... +...+++++
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~f--I~~lfe~iv 111 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPF--IYPLFEGIV 111 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchH--HHHHHHhhc
Confidence 456999999999999999999999875432 455666654
No 160
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.96 E-value=0.01 Score=44.92 Aligned_cols=54 Identities=28% Similarity=0.256 Sum_probs=44.3
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~ 103 (118)
...++..+++++|++.|..+.++||-.+. ....+..+|+..+ ||.++.|.++..
T Consensus 113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r---~~~~l~~~~l~~~-fD~vv~S~e~g~ 166 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKGTILGIISNFDDR---LRLLLLPLGLSAY-FDFVVESCEVGL 166 (237)
T ss_pred eeccHHHHHHHHHHhCCeEEEEecCCcHH---HHHHhhccCHHHh-hhhhhhhhhhcc
Confidence 46788999999999999888999987532 3467788999888 799999998743
No 161
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=95.86 E-value=0.012 Score=44.19 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=36.4
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC-CCCcCCCceee
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-FDPSLFAGAIT 97 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g-i~~~~fd~iit 97 (118)
....++||+.++++.|+.+|++++++||+++.. +...+++++ +-.. |+.++.
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~--~~~k~~~~~~~~~~-f~~~v~ 141 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSAS--FELKISRHEDIFKN-FSHVVL 141 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCccc--HHHHHHHhhHHHHh-cCCCee
Confidence 344678999999999999999999999987543 334455544 2222 455554
No 162
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.82 E-value=0.02 Score=41.80 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=33.6
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
...+.||+.++|+.|+++|++++|+||+.+ ..+...++.++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~--~~i~~il~~~~~ 109 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMD--FFVYPLLEGIVE 109 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcH--HHHHHHHHhhCC
Confidence 457899999999999999999999999854 334556666643
No 163
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=95.80 E-value=0.013 Score=42.33 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=25.5
Q ss_pred CcEEEEeccCcccCCCccCccHHH-HHHHHHHCCCc
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAIS-TLEMLATTGAK 64 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e-~L~~Lk~~Gi~ 64 (118)
+++++||+||||++....+..+.. +.+.+...|.+
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~ 37 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLN 37 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCc
Confidence 689999999999998776654443 44556666654
No 164
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=95.77 E-value=0.013 Score=44.15 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=26.1
Q ss_pred EEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480 65 MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 65 v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~ 99 (118)
.++.||+.+.+ +.+.|+.+||.+- ||.|+.-+
T Consensus 117 k~~FTNa~k~H--A~r~Lk~LGieDc-Fegii~~e 148 (244)
T KOG3109|consen 117 KWIFTNAYKVH--AIRILKKLGIEDC-FEGIICFE 148 (244)
T ss_pred EEEecCCcHHH--HHHHHHHhChHHh-ccceeEee
Confidence 78999987655 5699999999987 78887644
No 165
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=95.77 E-value=0.0078 Score=44.59 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=24.6
Q ss_pred EEeccCcccCCC------ccCccHHHHHHHHHHC-CCcEEEEeCCC
Q 033480 34 LLDQFGVLHDGK------KPYPGAISTLEMLATT-GAKMVVISNSS 72 (118)
Q Consensus 34 ~~D~DGtL~~~~------~~~pga~e~L~~Lk~~-Gi~v~I~TN~~ 72 (118)
|+|+||||..-. .+.+++.+.|++|.+. +..++|+|+.+
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 799999997633 3579999999999776 44699999754
No 166
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.54 E-value=0.046 Score=38.26 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=51.5
Q ss_pred EEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH--HHHHHHhcc
Q 033480 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL--THQYLLRLI 110 (118)
Q Consensus 34 ~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v--~~~~l~~~~ 110 (118)
.-++++|+..+..+++.+.+.|++|+.. +.++|+|+- |. -.+.+.++..|++.+ .++...+. -+..++...
T Consensus 18 ~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgD-r~-gsl~~lae~~gi~~~---rv~a~a~~e~K~~ii~eLk 90 (152)
T COG4087 18 AGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGD-RK-GSLVQLAEFVGIPVE---RVFAGADPEMKAKIIRELK 90 (152)
T ss_pred cceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCC-cc-hHHHHHHHHcCCcee---eeecccCHHHHHHHHHHhc
Confidence 3568899999999999999999999999 999999864 32 235566677898854 45544444 224444443
No 167
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.51 E-value=0.053 Score=45.15 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=35.4
Q ss_pred CCcEEEEeccCcccCCC-----------------ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 29 RFKAWLLDQFGVLHDGK-----------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~-----------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
..|++++|+|+|||.|. +++-.-.+.|..|+++|+-++|+|-+.
T Consensus 221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~ 281 (574)
T COG3882 221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT 281 (574)
T ss_pred ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCc
Confidence 48999999999999874 123335678999999999999999764
No 168
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.39 E-value=0.071 Score=39.66 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=30.3
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+-||+.|+...|+++|..++++|++=+.. +...-..+||+.
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~--i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGGFRQL--IEPVAEQLGIPK 129 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCChHHH--HHHHHHHhCCcH
Confidence 46999999999999999999999864432 233334566653
No 169
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.11 E-value=0.025 Score=42.53 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=16.2
Q ss_pred cCCcEEEEeccCcccCCCc
Q 033480 28 RRFKAWLLDQFGVLHDGKK 46 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~ 46 (118)
|.+++++||+||||++...
T Consensus 2 ~~~k~vIFDlDGTLiDs~~ 20 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGS 20 (267)
T ss_pred CceEEEEEcCCCCeecCCC
Confidence 4589999999999999754
No 170
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=94.96 E-value=0.13 Score=36.00 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=43.3
Q ss_pred cEEEEeccCccc-CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 31 KAWLLDQFGVLH-DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 31 ~~~~~D~DGtL~-~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
-..++|+||.++ -...---...+.++++.+.|.++.|+|--+.....+...-..|+-..|
T Consensus 44 giAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly 104 (138)
T PF04312_consen 44 GIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLY 104 (138)
T ss_pred EEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCccc
Confidence 456799999664 444555677889999999999999999876555555544455665544
No 171
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=94.90 E-value=0.074 Score=46.87 Aligned_cols=71 Identities=18% Similarity=0.376 Sum_probs=53.4
Q ss_pred cCCcEEEEecc---------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480 28 RRFKAWLLDQF---------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 28 ~~~~~~~~D~D---------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits 98 (118)
...+.+.+-.. |.+.-.+++.||+.++|+.|++.|++++++|+-.. ..+....+.+|+..+ ++.++++
T Consensus 501 ~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~--~tA~~ia~~~Gi~~~-~~~~v~g 577 (884)
T TIGR01522 501 AGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQ--ETAVSIARRLGMPSK-TSQSVSG 577 (884)
T ss_pred cCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCCCCC-CCceeEh
Confidence 45777766543 44455678899999999999999999999998643 446677788999876 4666665
Q ss_pred HHH
Q 033480 99 GEL 101 (118)
Q Consensus 99 ~~v 101 (118)
.+.
T Consensus 578 ~~l 580 (884)
T TIGR01522 578 EKL 580 (884)
T ss_pred HHh
Confidence 543
No 172
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=94.88 E-value=0.044 Score=46.93 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCcEEEEeccCcccCCCc---c---------CccHHHHHHHHHHCCCcEEEEeCCC-CC---hHHHHHHHHhCC--CCCc
Q 033480 29 RFKAWLLDQFGVLHDGKK---P---------YPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSLG--FDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~---~---------~pga~e~L~~Lk~~Gi~v~I~TN~~-r~---~~~~~~~L~~~g--i~~~ 90 (118)
+-+.++-|+||||++.+. . --|+.++..+++++||++..+|.++ .. +..+...++.=| |+.-
T Consensus 529 n~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdG 608 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDG 608 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCC
Confidence 678999999999998652 1 3689999999999999999999874 22 223333443323 3322
Q ss_pred CCCceeehHHHHHHHH
Q 033480 91 LFAGAITSGELTHQYL 106 (118)
Q Consensus 91 ~fd~iits~~v~~~~l 106 (118)
-.|++.+....++-
T Consensus 609 --PViLSPd~lf~Al~ 622 (738)
T KOG2116|consen 609 --PVILSPDSLFAALH 622 (738)
T ss_pred --CEEeCCCcchHHHH
Confidence 14555555555543
No 173
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=94.75 E-value=0.04 Score=40.94 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.9
Q ss_pred CcEEEEeccCcccCCCc
Q 033480 30 FKAWLLDQFGVLHDGKK 46 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~ 46 (118)
+++++||+||||++...
T Consensus 2 ~k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGS 18 (253)
T ss_pred ceEEEEeCCCCeecCCC
Confidence 68999999999999743
No 174
>PRK09449 dUMP phosphatase; Provisional
Probab=94.54 E-value=0.028 Score=40.78 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=14.6
Q ss_pred cCCcEEEEeccCcccC
Q 033480 28 RRFKAWLLDQFGVLHD 43 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~ 43 (118)
|.++.++||+||||++
T Consensus 1 m~~k~iiFDlDGTLid 16 (224)
T PRK09449 1 MKYDWILFDADETLFH 16 (224)
T ss_pred CCccEEEEcCCCchhc
Confidence 5689999999999996
No 175
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=94.38 E-value=0.063 Score=43.48 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCcEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCC---C-------hHHHHHHHHhC
Q 033480 29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSR---R-------ASTTIDKLKSL 85 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r---~-------~~~~~~~L~~~ 85 (118)
..+.+.||+||||.... .+.|.+..=|+.|.+.|+.++|.||... . ..-+..++.++
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl 153 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL 153 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence 57889999999998753 2468888889999999999999999742 1 12344566667
Q ss_pred CCCCc
Q 033480 86 GFDPS 90 (118)
Q Consensus 86 gi~~~ 90 (118)
+++..
T Consensus 154 ~vPi~ 158 (422)
T KOG2134|consen 154 GVPIQ 158 (422)
T ss_pred CCceE
Confidence 77654
No 176
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=94.28 E-value=0.17 Score=41.01 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=39.9
Q ss_pred CCcEEEEeccCcccCCCccC---ccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHHHh
Q 033480 29 RFKAWLLDQFGVLHDGKKPY---PGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKS 84 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~---pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L~~ 84 (118)
+.+.+-||-|+|||.+..-+ .-+..-|-.|-++|+.++|+|..+.. ...+.++|..
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~G 205 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHG 205 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 57889999999999776433 33455555677899999999998743 3445555543
No 177
>PRK10671 copA copper exporting ATPase; Provisional
Probab=94.22 E-value=0.15 Score=44.65 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=51.2
Q ss_pred cCCcEEEEeccCcc----cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480 28 RRFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI 96 (118)
Q Consensus 28 ~~~~~~~~D~DGtL----~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii 96 (118)
.....+++-.||.+ .-...+.||+.+.|++|+++|++++++|+.++ ......++.+|++.. |..+.
T Consensus 628 ~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~--~~a~~ia~~lgi~~~-~~~~~ 697 (834)
T PRK10671 628 QGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNP--TTANAIAKEAGIDEV-IAGVL 697 (834)
T ss_pred CCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCCEE-EeCCC
Confidence 34666777777764 45667899999999999999999999998644 345678888999876 55554
No 178
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=93.96 E-value=0.1 Score=36.47 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
|++.++|++++++|++++|+|++++ ..+...++.+|++.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~--~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPD--EIIEPIAERLGIDD 130 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEH--HHHHHHHHHTTSSE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCc
Confidence 6666999999999999999998743 44667778899874
No 179
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=93.92 E-value=0.029 Score=41.90 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=18.1
Q ss_pred hhcCCcEEEEeccCcccCCCcc
Q 033480 26 ETRRFKAWLLDQFGVLHDGKKP 47 (118)
Q Consensus 26 ~~~~~~~~~~D~DGtL~~~~~~ 47 (118)
.++++++++||+||||++....
T Consensus 18 ~~~~~k~viFDlDGTLiDs~~~ 39 (248)
T PLN02770 18 GLAPLEAVLFDVDGTLCDSDPL 39 (248)
T ss_pred ccCccCEEEEcCCCccCcCHHH
Confidence 3347899999999999998654
No 180
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=93.88 E-value=0.05 Score=44.71 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=32.4
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHHHhC------CCCCcCCCceeehHH
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSL------GFDPSLFAGAITSGE 100 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L~~~------gi~~~~fd~iits~~ 100 (118)
-|....+|++|++.|++++++|||+... ..+...+=.- ....+ ||.||+.+.
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dl-FDvVIv~A~ 243 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDL-FDVVIVDAR 243 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGC-ECEEEES--
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhh-eeEEEEcCC
Confidence 5789999999999999999999986432 2233333222 45567 798887764
No 181
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=93.71 E-value=0.24 Score=42.99 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=48.2
Q ss_pred cCCcEEEEeccCcc----cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 28 RRFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 28 ~~~~~~~~D~DGtL----~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
...+.+++-.||++ .-.+++.|++.+.|++|+++|++++++|+..+ ..+....+.+|++.+
T Consensus 546 ~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~--~~a~~ia~~lgi~~~ 610 (741)
T PRK11033 546 AGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNP--RAAAAIAGELGIDFR 610 (741)
T ss_pred CCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCee
Confidence 35677777777754 45668899999999999999999999998643 446677888999754
No 182
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=93.62 E-value=0.061 Score=38.87 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.9
Q ss_pred CcEEEEeccCcccCCCccC
Q 033480 30 FKAWLLDQFGVLHDGKKPY 48 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~ 48 (118)
++.++||+||||.+....+
T Consensus 1 ~k~iiFD~DGTL~ds~~~~ 19 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLV 19 (220)
T ss_pred CcEEEEecCCCeeccCchH
Confidence 5789999999999876544
No 183
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=93.55 E-value=0.061 Score=38.38 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=14.6
Q ss_pred cEEEEeccCcccCCCccC
Q 033480 31 KAWLLDQFGVLHDGKKPY 48 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~~~~ 48 (118)
++++||+||||++.....
T Consensus 1 k~viFDlDGTL~d~~~~~ 18 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPV 18 (203)
T ss_pred CeEEEecCCceeeeCCCH
Confidence 579999999999876443
No 184
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=93.51 E-value=0.053 Score=41.61 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHhhcCCcEEEEeccCcccCCC-ccC
Q 033480 24 IAETRRFKAWLLDQFGVLHDGK-KPY 48 (118)
Q Consensus 24 ~~~~~~~~~~~~D~DGtL~~~~-~~~ 48 (118)
-.++..++.++||+||||++.. ...
T Consensus 34 ~~~~~~~k~VIFDlDGTLvDS~~~~~ 59 (286)
T PLN02779 34 ASASALPEALLFDCDGVLVETERDGH 59 (286)
T ss_pred hccccCCcEEEEeCceeEEccccHHH
Confidence 3344579999999999999987 543
No 185
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=93.33 E-value=0.34 Score=33.70 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=34.1
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
.++.+...|..|+++|+.++++|++..+ +.+.+.|+.+.+..
T Consensus 45 fY~Di~rIL~dLk~~GVtl~~ASRt~ap-~iA~q~L~~fkvk~ 86 (144)
T KOG4549|consen 45 FYDDIRRILVDLKKLGVTLIHASRTMAP-QIASQGLETFKVKQ 86 (144)
T ss_pred eccchhHHHHHHHhcCcEEEEecCCCCH-HHHHHHHHHhccCc
Confidence 4799999999999999999999987533 44567788887753
No 186
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=93.23 E-value=0.62 Score=29.90 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=46.8
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
+.+.+++|+-|+=+-+..-+--..+..++++++|..+.++.=+ ..+.+.|+..|+...
T Consensus 38 ~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 38 PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVS----PAVKRLFELSGLFKI 95 (106)
T ss_pred CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhCCceE
Confidence 5789999999988888777777778888999999999888532 347788999998765
No 187
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=93.23 E-value=0.17 Score=37.95 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=32.7
Q ss_pred CcEEEEeccCcccC-CCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 30 FKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 30 ~~~~~~D~DGtL~~-~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
.-.++||+||||.. .....|...++|+.|++. ..+.++-++
T Consensus 11 ~~l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~~-v~ig~Vggs 52 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPPRQKVTPEMLEFLQKLRKK-VTIGFVGGS 52 (252)
T ss_pred ceEEEEecCCccccccccCCHHHHHHHHHHhhh-eEEEEeecH
Confidence 34788999999975 456789999999998765 677787654
No 188
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=93.20 E-value=0.11 Score=37.18 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=29.3
Q ss_pred ccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCC-----hHHHHHHHHhC
Q 033480 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-----ASTTIDKLKSL 85 (118)
Q Consensus 41 L~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-----~~~~~~~L~~~ 85 (118)
++.+.+++||+.|+|++|.+.|..++++|+++.. .....+-|++.
T Consensus 68 ~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~h 117 (191)
T PF06941_consen 68 FFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERH 117 (191)
T ss_dssp TTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHH
T ss_pred hhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHH
Confidence 4667789999999999999999777777776532 23334555553
No 189
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=93.15 E-value=0.16 Score=39.01 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=50.7
Q ss_pred EEEeccCcccCCC----------------------ccC-cc----HHHHHHHHHHC------CCcEEEEeCCC-CChHHH
Q 033480 33 WLLDQFGVLHDGK----------------------KPY-PG----AISTLEMLATT------GAKMVVISNSS-RRASTT 78 (118)
Q Consensus 33 ~~~D~DGtL~~~~----------------------~~~-pg----a~e~L~~Lk~~------Gi~v~I~TN~~-r~~~~~ 78 (118)
+.||-|+||..+. .|+ +| -.+.|.+|+++ -++++++|..+ ..++.+
T Consensus 124 IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~Rv 203 (264)
T PF06189_consen 124 IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERV 203 (264)
T ss_pred EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHH
Confidence 6799999998763 121 22 23344445443 45789999976 556778
Q ss_pred HHHHHhCCCCCcCCCceeehHHHHHHHHHhcc
Q 033480 79 IDKLKSLGFDPSLFAGAITSGELTHQYLLRLI 110 (118)
Q Consensus 79 ~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~ 110 (118)
..-|+.+|+... +..+.++.....+|+...
T Consensus 204 I~TLr~Wgv~vD--EafFLgG~~K~~vL~~~~ 233 (264)
T PF06189_consen 204 IRTLRSWGVRVD--EAFFLGGLPKGPVLKAFR 233 (264)
T ss_pred HHHHHHcCCcHh--HHHHhCCCchhHHHHhhC
Confidence 899999999865 466666666666666543
No 190
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=92.92 E-value=0.063 Score=39.81 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.9
Q ss_pred CCcEEEEeccCcccCCCccC
Q 033480 29 RFKAWLLDQFGVLHDGKKPY 48 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~ 48 (118)
++++++||+||||++....+
T Consensus 9 ~~k~iiFDlDGTL~D~~~~~ 28 (238)
T PRK10748 9 RISALTFDLDDTLYDNRPVI 28 (238)
T ss_pred CceeEEEcCcccccCChHHH
Confidence 57999999999999986543
No 191
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.33 Score=38.66 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCcEEEEeccCcccCC-------------------CccCccHHHHHHHHHHCC-CcEEEEeCCCCC-hHHHHHHHHhCCC
Q 033480 29 RFKAWLLDQFGVLHDG-------------------KKPYPGAISTLEMLATTG-AKMVVISNSSRR-ASTTIDKLKSLGF 87 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~-------------------~~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~-~~~~~~~L~~~gi 87 (118)
.-=+++-|+|.|+.+. -.++||+-.+.+.|.+.| .+++.+||++.. ...+.+.+..-++
T Consensus 160 a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~ 239 (373)
T COG4850 160 AGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNF 239 (373)
T ss_pred cceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCC
Confidence 3446889999988653 146999999999999888 899999999743 3445555554443
Q ss_pred CCc---------CCCceeehHHH
Q 033480 88 DPS---------LFAGAITSGEL 101 (118)
Q Consensus 88 ~~~---------~fd~iits~~v 101 (118)
+.- .+|.++.|+..
T Consensus 240 P~GPl~L~~~g~~~~~i~~sga~ 262 (373)
T COG4850 240 PYGPLLLRRWGGVLDNIIESGAA 262 (373)
T ss_pred CCCchhHhhcCCcccccccchhh
Confidence 311 13666666654
No 192
>PRK11590 hypothetical protein; Provisional
Probab=92.80 E-value=0.14 Score=37.30 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.1
Q ss_pred CCcEEEEeccCcccCCC
Q 033480 29 RFKAWLLDQFGVLHDGK 45 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~ 45 (118)
..+.++||+||||+...
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56799999999999443
No 193
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=92.70 E-value=0.37 Score=39.91 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.0
Q ss_pred CCcEEEEeccCcccCCCcc------------CccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 29 RFKAWLLDQFGVLHDGKKP------------YPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~------------~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
+.+.+++|+||||...+.+ .-|+..+-.++-++||++.-+|+++
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~ 429 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRS 429 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEeccc
Confidence 6789999999999886532 4678888888989999999999875
No 194
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=92.44 E-value=0.071 Score=37.25 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.5
Q ss_pred CcEEEEeccCcccCCCcc
Q 033480 30 FKAWLLDQFGVLHDGKKP 47 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~ 47 (118)
++.++||+||||++....
T Consensus 1 ~~~iiFD~DGTL~ds~~~ 18 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPL 18 (185)
T ss_pred CCeEEEcCCCcccCChHH
Confidence 578999999999998654
No 195
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=91.94 E-value=0.83 Score=29.45 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+.+.+++|+-|+-+-+..-+.-..++.++++++|..+.++--+ ..+.+.|+..|+..
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~----~~v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIR----PEVAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHhCCCh
Confidence 6789999999988888776677778888899999998888533 34778899999875
No 196
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.92 E-value=0.087 Score=37.86 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CcEEEEeccCcccCCCcc
Q 033480 30 FKAWLLDQFGVLHDGKKP 47 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~ 47 (118)
++.++||+||||.+....
T Consensus 1 ~k~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA 18 (224)
T ss_pred CCEEEEcCcCcccccchH
Confidence 578999999999987654
No 197
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=91.91 E-value=0.084 Score=37.73 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=13.4
Q ss_pred cEEEEeccCcccCCCc
Q 033480 31 KAWLLDQFGVLHDGKK 46 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~~ 46 (118)
++++||+||||++...
T Consensus 1 ~~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 1 QALVLDMDGVMADVSQ 16 (197)
T ss_pred CceEEecCceEEechH
Confidence 3689999999998754
No 198
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=91.12 E-value=1.1 Score=32.39 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=47.4
Q ss_pred HHHhhcCCcEEEEeccCcccC--CCccCccHHHHHHHHHHC-C-CcEEEEeCCCCC-----hHHHHHHHH-hCCCCCc
Q 033480 23 HIAETRRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATT-G-AKMVVISNSSRR-----ASTTIDKLK-SLGFDPS 90 (118)
Q Consensus 23 ~~~~~~~~~~~~~D~DGtL~~--~~~~~pga~e~L~~Lk~~-G-i~v~I~TN~~r~-----~~~~~~~L~-~~gi~~~ 90 (118)
+++....+|++++|=|.|+.- +..+.|.-..-++++++. | ..++++||+... .......|+ ..||++.
T Consensus 36 ~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl 113 (190)
T KOG2961|consen 36 EILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL 113 (190)
T ss_pred chhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE
Confidence 343333799999999998864 445678888888888775 3 679999998532 123345554 4898865
No 199
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=90.71 E-value=1.4 Score=29.14 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=49.2
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.+.+...+.+.+++|+.|+=+-+.--.--...+++.+++.|..++++..++ .+.+.+...|+...
T Consensus 34 ~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p----~v~~~~~~~gl~~~ 100 (117)
T COG1366 34 TLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQP----EVARTLELTGLDKS 100 (117)
T ss_pred HHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCH----HHHHHHHHhCchhh
Confidence 33434443456669999999888777666666777888999999888887542 36788899998865
No 200
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=1.2 Score=35.45 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=60.6
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCC-C--ccCccHHHHHHHHHHCCCcEEEEeCCCCC---hH---HHHHHHHhCCCCCc
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDG-K--KPYPGAISTLEMLATTGAKMVVISNSSRR---AS---TTIDKLKSLGFDPS 90 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~-~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~---~~---~~~~~L~~~gi~~~ 90 (118)
.+...++ ...+++++=...+=.+. . -..+...|.++.+++.|.++++++|...+ .+ .+.+.|..+|.
T Consensus 18 ~l~~ai~-~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv--- 93 (347)
T COG0826 18 DLKAAIA-AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV--- 93 (347)
T ss_pred HHHHHHH-cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC---
Confidence 3344444 23566766544322221 2 34577999999999999999999997522 12 34455555663
Q ss_pred CCCceeehHHHHHHHHHhccCCCcc
Q 033480 91 LFAGAITSGELTHQYLLRLIIASSV 115 (118)
Q Consensus 91 ~fd~iits~~v~~~~l~~~~~~~~v 115 (118)
|.++-++.....++++.+|.-++
T Consensus 94 --Daviv~Dpg~i~l~~e~~p~l~i 116 (347)
T COG0826 94 --DAVIVADPGLIMLARERGPDLPI 116 (347)
T ss_pred --CEEEEcCHHHHHHHHHhCCCCcE
Confidence 78999999999999999977654
No 201
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=90.55 E-value=0.53 Score=30.69 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
++.+++|+.++-.-+..-+.-..++.+.++++|+.++++.- ...+...|...|+...
T Consensus 48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~----~~~v~~~l~~~~~~~~ 104 (117)
T PF01740_consen 48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL----NPDVRRILERSGLIDF 104 (117)
T ss_dssp SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH----HHHHHHHHHHTTGHHH
T ss_pred ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCChh
Confidence 58999999998777777777888899999999999988852 2457788999997644
No 202
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=90.36 E-value=0.26 Score=37.36 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=41.9
Q ss_pred CCCccCccHHHHHHHHHHCCC-cEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480 43 DGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi-~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit 97 (118)
+..+..||..++|+.+++.|- -++|+|-+ +.-.+...|+++|+... |+.|+|
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDa--NsfFIe~~Lea~~~~d~-F~~IfT 133 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDA--NSFFIEEILEAAGIHDL-FSEIFT 133 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecC--chhHHHHHHHHccHHHH-HHHHhc
Confidence 344668999999999999986 78999875 33567799999999887 677765
No 203
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=90.25 E-value=0.13 Score=41.93 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCcEEEEeccCcccCCCccC-ccHHHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKPY-PGAISTLEML 58 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~-pga~e~L~~L 58 (118)
.+++++||+||||++....+ ....++++++
T Consensus 240 m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~ 270 (459)
T PRK06698 240 MLQALIFDMDGTLFQTDKILELSLDDTFDHL 270 (459)
T ss_pred hhhheeEccCCceecchhHHHHHHHHHHHHH
Confidence 47899999999999987653 3334455444
No 204
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=90.21 E-value=0.2 Score=35.48 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=23.2
Q ss_pred CcEEEEeccCcccCCCccC--ccHHHHHHHHHH
Q 033480 30 FKAWLLDQFGVLHDGKKPY--PGAISTLEMLAT 60 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~--pga~e~L~~Lk~ 60 (118)
++.++||.||||+.+...+ ++..++++.+.+
T Consensus 1 i~~i~fDktGTLt~~~~~v~~~~~~~~~~~~~~ 33 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSVAPPSNEAALAIAAA 33 (215)
T ss_dssp ESEEEEECCTTTBESHHEEESCSHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEEEeccHHHHHHHHHH
Confidence 4789999999999887666 666666555544
No 205
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=89.90 E-value=1.1 Score=35.47 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=33.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.|+..++++.++++|+.+.+.||+..-.....+.|...|+.
T Consensus 76 ~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~ 116 (378)
T PRK05301 76 RKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLD 116 (378)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCC
Confidence 48889999999999999999999875455566778777754
No 206
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=89.89 E-value=0.11 Score=36.92 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=14.3
Q ss_pred CcEEEEeccCcccCCCc
Q 033480 30 FKAWLLDQFGVLHDGKK 46 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~ 46 (118)
++.++||+||||++...
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 46899999999998654
No 207
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=89.86 E-value=0.76 Score=40.01 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=50.4
Q ss_pred EEEEeccCc----ccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 32 AWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 32 ~~~~D~DGt----L~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
.+++-.||. +.-.+++-|++.++|++|+++|++++++|+=.+ ......-+.+||+.+ +-++...+.
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~--~~A~~iA~~lGId~v-~AellPedK 588 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNR--RTAEAIAKELGIDEV-RAELLPEDK 588 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcChHhh-eccCCcHHH
Confidence 588888884 345778899999999999999999999997433 345566688999877 455554443
No 208
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=89.74 E-value=0.2 Score=35.21 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.2
Q ss_pred cEEEEeccCcccCCCc
Q 033480 31 KAWLLDQFGVLHDGKK 46 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~~ 46 (118)
..++||+||||++...
T Consensus 1 ~~viFDlDGTL~ds~~ 16 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSA 16 (184)
T ss_pred CeEEEeCCCCCCCCcc
Confidence 3689999999998753
No 209
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=89.38 E-value=0.9 Score=39.29 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=46.5
Q ss_pred cCCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 28 RRFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 28 ~~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
...+.+++-.|+ .+.-.+.+-|++.+.+++|++.|++++++|+-. ...+....+.+|++..
T Consensus 424 ~G~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~--~~ta~~iA~~lGI~~v 488 (675)
T TIGR01497 424 QGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDN--RLTAAAIAAEAGVDDF 488 (675)
T ss_pred CCCeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHcCCCEE
Confidence 356777765554 445566788999999999999999999999753 3446677788998755
No 210
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=89.37 E-value=1.3 Score=34.70 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.9
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.|+..++++.+++.|+.+.+.||+..-..+..+.|...|+.
T Consensus 67 ~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 67 RPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD 107 (358)
T ss_pred cccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence 48899999999999999999999865445566777777654
No 211
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=88.98 E-value=0.35 Score=34.81 Aligned_cols=20 Identities=35% Similarity=0.253 Sum_probs=16.8
Q ss_pred cCCcEEEEeccCcccCCCcc
Q 033480 28 RRFKAWLLDQFGVLHDGKKP 47 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~ 47 (118)
+.++.++||+||||++....
T Consensus 2 ~~~k~i~FD~d~TL~d~~~~ 21 (229)
T COG1011 2 MMIKAILFDLDGTLLDFDSA 21 (229)
T ss_pred CceeEEEEecCCcccccchH
Confidence 47899999999999987543
No 212
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=88.79 E-value=0.28 Score=35.22 Aligned_cols=16 Identities=38% Similarity=0.353 Sum_probs=13.9
Q ss_pred CcEEEEeccCcccCCC
Q 033480 30 FKAWLLDQFGVLHDGK 45 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~ 45 (118)
++.++||+||||....
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 5789999999999863
No 213
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=88.52 E-value=0.82 Score=39.54 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=50.3
Q ss_pred CCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 29 RFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 29 ~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
..+.++.-.|+ .+.-.+.+-|++.+.+++|++.|+++.++|+- +.......-+.+|++.. |.++ +.++ -.+
T Consensus 420 G~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGD--n~~TA~aIA~elGI~~v-~A~~-~Ped-K~~ 494 (673)
T PRK14010 420 GGTPLVVLEDNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGD--NELTAATIAKEAGVDRF-VAEC-KPED-KIN 494 (673)
T ss_pred CCeEEEEEECCEEEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCceE-EcCC-CHHH-HHH
Confidence 45655543343 44556678899999999999999999999974 33445667788999765 4443 3333 334
Q ss_pred HHHh
Q 033480 105 YLLR 108 (118)
Q Consensus 105 ~l~~ 108 (118)
++++
T Consensus 495 iV~~ 498 (673)
T PRK14010 495 VIRE 498 (673)
T ss_pred HHHH
Confidence 4443
No 214
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=88.24 E-value=1.7 Score=38.80 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=42.5
Q ss_pred CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 39 GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
|.+.-.+++-|++.++|++|++.|+++.++|+-. ...+...-+.+|+.... ..++++.+
T Consensus 572 Gli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~--~~tA~~iA~~~GI~~~~-~~vi~G~~ 630 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDN--IDTAKAIARNCGILTFG-GLAMEGKE 630 (941)
T ss_pred EEeeccCCCchhHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHcCCCCCC-ceEeeHHH
Confidence 3444456788999999999999999999999743 34456677889997532 34554443
No 215
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=87.86 E-value=0.91 Score=33.65 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=42.1
Q ss_pred chhhHHHHHhhcCCcEEEE-eccCcccCCCccC--cc-HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 17 TLNGLRHIAETRRFKAWLL-DQFGVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~-D~DGtL~~~~~~~--pg-a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
+.+.+-+.+. +.+.++- .-.|+-..+.+|. ++ +.++++.+++.|+.+++-||+..+.+.+...+..
T Consensus 20 t~eel~~~~~--~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~ 89 (213)
T PRK10076 20 TLDALEREVM--KDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL 89 (213)
T ss_pred CHHHHHHHHH--hhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh
Confidence 3444444444 3444332 2357777777752 43 7899999999999999999986544444444443
No 216
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=87.83 E-value=1 Score=39.99 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
.+++.|++.++|+.|++.|+++.++|+.. ........+.+|+..
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~--~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDN--KETAEAICRRIGIFS 578 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHcCCCC
Confidence 45678999999999999999999999753 344667778899864
No 217
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=87.70 E-value=1.7 Score=37.60 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=51.9
Q ss_pred cCCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480 28 RRFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (118)
Q Consensus 28 ~~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~ 103 (118)
...+.+.+-.|+ .+.-.+.+-||+.|.+++|++.|+++.++|+-. .......-+.+|++.. |.+ .+.++ -.
T Consensus 423 ~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn--~~TA~aIA~elGId~v-~A~-~~Ped-K~ 497 (679)
T PRK01122 423 KGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDN--PLTAAAIAAEAGVDDF-LAE-ATPED-KL 497 (679)
T ss_pred CCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHcCCcEE-Ecc-CCHHH-HH
Confidence 356777765554 445566788999999999999999999999742 2345566788999765 433 33333 33
Q ss_pred HHHHh
Q 033480 104 QYLLR 108 (118)
Q Consensus 104 ~~l~~ 108 (118)
+++++
T Consensus 498 ~iV~~ 502 (679)
T PRK01122 498 ALIRQ 502 (679)
T ss_pred HHHHH
Confidence 44444
No 218
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=87.68 E-value=0.19 Score=34.89 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.6
Q ss_pred EEEEeccCcccCCCc
Q 033480 32 AWLLDQFGVLHDGKK 46 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~ 46 (118)
+++||+||||+....
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 479999999998764
No 219
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=87.49 E-value=2 Score=27.39 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=46.2
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
..+.+++|+.++-+-+..-+--..++.++++++|..+.++.-+ ..+.+.|+..|+..
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~ 94 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGIS----PAVRITLTESGLDK 94 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCC----HHHHHHHHHhCchh
Confidence 4789999999988888877777888899999999998888532 34678888888753
No 220
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=87.44 E-value=0.25 Score=34.40 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=13.4
Q ss_pred EEEEeccCcccCCCcc
Q 033480 32 AWLLDQFGVLHDGKKP 47 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~~ 47 (118)
+++||+||||++....
T Consensus 1 ~iiFD~DGTL~ds~~~ 16 (185)
T TIGR01990 1 AVIFDLDGVITDTAEY 16 (185)
T ss_pred CeEEcCCCccccChHH
Confidence 4799999999987654
No 221
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=87.40 E-value=2.5 Score=26.85 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
..+.+++|+.++-.-+..-+.-..++.++++++|..+.++.-+ ..+.+.++..|+...
T Consensus 42 ~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVS----PRVARLLDITGLLRI 99 (108)
T ss_pred CCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCC----HHHHHHHHHhChhhe
Confidence 6789999999988877776777777888889999988777533 346788888888754
No 222
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=87.04 E-value=1.2 Score=40.07 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=34.9
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++-|++.++|++++++|+++.++|+. +...+....+.+|+.
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd--~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTGD--HPITAKAIAKGVGII 608 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCC
Confidence 466799999999999999999999975 444566777888884
No 223
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=86.75 E-value=1.6 Score=38.88 Aligned_cols=54 Identities=11% Similarity=0.250 Sum_probs=40.8
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
-.+++-|++.++|++|++.|+++.++|+- +.......-+.+|+.. +.++++.+.
T Consensus 547 ~~Dp~R~~a~~aI~~l~~aGI~v~miTGD--~~~tA~~IA~~lGI~~---~~v~~G~el 600 (902)
T PRK10517 547 FLDPPKETTAPALKALKASGVTVKILTGD--SELVAAKVCHEVGLDA---GEVLIGSDI 600 (902)
T ss_pred hhCcchhhHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHcCCCc---cCceeHHHH
Confidence 34577899999999999999999999974 2344566778899952 456665543
No 224
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=86.70 E-value=2.7 Score=25.97 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=45.4
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.+++|+.++=.-+.....-..++.++++++|..+.+..-+ ..+.+.++..|+...
T Consensus 38 ~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~----~~~~~~l~~~gl~~~ 94 (99)
T cd07043 38 PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVS----PAVRRVLELTGLDRL 94 (99)
T ss_pred CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCC----HHHHHHHHHhCccee
Confidence 589999999988888777777888899999999887776432 357788899998754
No 225
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=86.58 E-value=0.76 Score=34.06 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=33.2
Q ss_pred CcEEEEeccCcccCC--------CccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 30 FKAWLLDQFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~--------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
+...+=.+.|-+|.. .+++|.+.++|++.++.|++++|-|+++
T Consensus 79 K~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGS 129 (229)
T COG4229 79 KDTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGS 129 (229)
T ss_pred ccchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCC
Confidence 333444466766542 3679999999999999999999999876
No 226
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=86.54 E-value=0.52 Score=34.58 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.0
Q ss_pred CCcEEEEeccCcccCCCcc
Q 033480 29 RFKAWLLDQFGVLHDGKKP 47 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~ 47 (118)
..+.++||+||||++.+..
T Consensus 4 ~~~la~FDfDgTLt~~ds~ 22 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMF 22 (210)
T ss_pred cCcEEEEcCCCCCccCccH
Confidence 4678999999999998743
No 227
>PRK15452 putative protease; Provisional
Probab=86.27 E-value=3.1 Score=34.27 Aligned_cols=84 Identities=13% Similarity=-0.033 Sum_probs=55.2
Q ss_pred cCCcEEEEeccCcccCC---CccCccHHHHHHHHHHCCCcEEEEeCCCCChH---HHHHHHH---hCCCCCcCCCceeeh
Q 033480 28 RRFKAWLLDQFGVLHDG---KKPYPGAISTLEMLATTGAKMVVISNSSRRAS---TTIDKLK---SLGFDPSLFAGAITS 98 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~---~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~---~~~~~L~---~~gi~~~~fd~iits 98 (118)
...+.+++=.++=-++. .--.+...++++..+++|.++++++|.-.+.. .+.+.++ .+| .|.++-+
T Consensus 22 ~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g-----vDgvIV~ 96 (443)
T PRK15452 22 YGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK-----PDALIMS 96 (443)
T ss_pred CCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC-----CCEEEEc
Confidence 36777777443311111 11236688899999999999999999753322 2333333 444 3788999
Q ss_pred HHHHHHHHHhccCCCccc
Q 033480 99 GELTHQYLLRLIIASSVI 116 (118)
Q Consensus 99 ~~v~~~~l~~~~~~~~v~ 116 (118)
+-....++++.+|+.+|.
T Consensus 97 d~G~l~~~ke~~p~l~ih 114 (443)
T PRK15452 97 DPGLIMMVREHFPEMPIH 114 (443)
T ss_pred CHHHHHHHHHhCCCCeEE
Confidence 988889999988776653
No 228
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=86.07 E-value=0.27 Score=33.37 Aligned_cols=15 Identities=40% Similarity=0.344 Sum_probs=12.6
Q ss_pred EEEEeccCcccCCCc
Q 033480 32 AWLLDQFGVLHDGKK 46 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~ 46 (118)
.++||+||||++...
T Consensus 1 ~iifD~DGTL~d~~~ 15 (154)
T TIGR01549 1 AILFDIDGTLVDSSF 15 (154)
T ss_pred CeEecCCCcccccHH
Confidence 479999999999753
No 229
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=85.94 E-value=0.31 Score=34.77 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.7
Q ss_pred EEEeccCcccCCCc
Q 033480 33 WLLDQFGVLHDGKK 46 (118)
Q Consensus 33 ~~~D~DGtL~~~~~ 46 (118)
++||+||||.+...
T Consensus 1 viFD~DGTL~Ds~~ 14 (213)
T TIGR01449 1 VLFDLDGTLVDSAP 14 (213)
T ss_pred CeecCCCccccCHH
Confidence 58999999998654
No 230
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=85.91 E-value=1.7 Score=34.03 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.1
Q ss_pred cCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480 47 PYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v 101 (118)
++|...|+|+.+++.| ++++|+||++. .+.++.+.. +|.+.-|-++
T Consensus 93 Ly~~L~elI~~~k~~g~~~tflvTNgsl-----pdv~~~L~~----~dql~~sLdA 139 (296)
T COG0731 93 LYPNLGELIEEIKKRGKKTTFLVTNGSL-----PDVLEELKL----PDQLYVSLDA 139 (296)
T ss_pred cccCHHHHHHHHHhcCCceEEEEeCCCh-----HHHHHHhcc----CCEEEEEecc
Confidence 5799999999999999 79999999865 244555542 2556655554
No 231
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=85.49 E-value=1 Score=33.31 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=37.2
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCCcc--CccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~--~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
..+++++ .++..-....|+.+.|.+| .++..++++.|+++|+++.+=||.+
T Consensus 57 ~~~~I~~--~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 57 SADEILA--DIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred CHHHHHH--HHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCC
Confidence 4445555 4444333333777777776 4699999999999999999999986
No 232
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.40 E-value=8.6 Score=33.11 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=45.5
Q ss_pred cEEEEeccCccc-CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 31 KAWLLDQFGVLH-DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 31 ~~~~~D~DGtL~-~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
-..++|+||-++ -.+.---.--+.++.+.+.|.|++|+|.-+.....+...-..||-..|.-+.-++.++
T Consensus 256 giAvldldGevl~~~S~r~~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly~P~~dLsveE 326 (652)
T COG2433 256 GIAVLDLDGEVLDLESRRGIDRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFNAVLYTPDRDLSVEE 326 (652)
T ss_pred eEEEEecCCcEEeeeccccCCHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCcccCCcccCCHHH
Confidence 356799999554 3443333445667777788999999998766556666666668876553234444433
No 233
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=85.16 E-value=1.9 Score=37.56 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=43.6
Q ss_pred cCCcEEEEec---------cCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 28 RRFKAWLLDQ---------FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 28 ~~~~~~~~D~---------DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
..++.+.+=. =|.+.-.+++-|++.++|++|++.|+++.++|+-.. ......-+.+|+.
T Consensus 415 ~G~rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~--~tA~~IA~~lGI~ 482 (755)
T TIGR01647 415 RGYRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHL--AIAKETARRLGLG 482 (755)
T ss_pred CCCEEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCCC
Confidence 3566666543 234445567889999999999999999999997533 3456677889985
No 234
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=84.57 E-value=0.4 Score=33.11 Aligned_cols=15 Identities=47% Similarity=0.468 Sum_probs=12.5
Q ss_pred EEEEeccCcccCCCc
Q 033480 32 AWLLDQFGVLHDGKK 46 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~ 46 (118)
+++||+||||++...
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 479999999998743
No 235
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=84.40 E-value=2.3 Score=32.69 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=33.7
Q ss_pred CCcEEEEecc--------------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQF--------------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~D--------------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+...+.+|+| +...-+.+.+|+..+++++|+++|+++++...-
T Consensus 40 P~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 40 PLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 4788999875 134444567999999999999999999887753
No 236
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=84.31 E-value=0.41 Score=34.23 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=12.4
Q ss_pred EEEeccCcccCCCcc
Q 033480 33 WLLDQFGVLHDGKKP 47 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~ 47 (118)
++||+||||++....
T Consensus 1 iiFDlDGTL~Ds~~~ 15 (205)
T TIGR01454 1 VVFDLDGVLVDSFAV 15 (205)
T ss_pred CeecCcCccccCHHH
Confidence 589999999998543
No 237
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=83.82 E-value=0.59 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=11.8
Q ss_pred EEEeccCcccCCC
Q 033480 33 WLLDQFGVLHDGK 45 (118)
Q Consensus 33 ~~~D~DGtL~~~~ 45 (118)
++||+||||+.+.
T Consensus 2 a~FD~DgTL~~~~ 14 (202)
T TIGR01490 2 AFFDFDGTLTAKD 14 (202)
T ss_pred eEEccCCCCCCCc
Confidence 7999999999875
No 238
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=83.81 E-value=2.4 Score=32.99 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=33.6
Q ss_pred CCcEEEEecc-----C--cccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----G--VLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----G--tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+...+.+|+| | .+.-+.+.+|...+++++|+++|+++++..+
T Consensus 39 P~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 39 PLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred CccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 5788999975 3 4444556789999999999999999887654
No 239
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=83.78 E-value=3.5 Score=29.14 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=39.6
Q ss_pred ccchhhHHHHHhhcCCcEEEEeccCcccCCCcc--CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~--~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
..+.+.+.+.+. ..... +.++.+.+.+| .+...++++.+++.|+.+.+.||... . ...+.+...|
T Consensus 46 ~~~~~~i~~~i~--~~~~~---~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~-~-~~l~~l~~~g 112 (191)
T TIGR02495 46 EIEVEFLLEFLR--SRQGL---IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN-P-RVLEELLEEG 112 (191)
T ss_pred cCCHHHHHHHHH--HhcCC---CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC-H-HHHHHHHhcC
Confidence 455566656655 22111 23333445544 36688999999999999999999863 2 2334444445
No 240
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=83.69 E-value=2.5 Score=37.63 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=39.9
Q ss_pred cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 42 ~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
.-.+++-|++.++|++|++.|+++.++|+- +.......-+.+|+.. +.++++.+
T Consensus 546 ~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD--~~~tA~aIA~~lGI~~---~~vi~G~e 599 (903)
T PRK15122 546 TFLDPPKESAAPAIAALRENGVAVKVLTGD--NPIVTAKICREVGLEP---GEPLLGTE 599 (903)
T ss_pred eccCccHHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCCC---CCccchHh
Confidence 334567899999999999999999999974 3334566778899962 34555444
No 241
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=82.53 E-value=0.82 Score=31.84 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=11.9
Q ss_pred EEEeccCcccCCC
Q 033480 33 WLLDQFGVLHDGK 45 (118)
Q Consensus 33 ~~~D~DGtL~~~~ 45 (118)
++||+||||+.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999887
No 242
>PRK11660 putative transporter; Provisional
Probab=82.33 E-value=3.9 Score=34.42 Aligned_cols=76 Identities=13% Similarity=0.013 Sum_probs=54.5
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcC-CCceeehHHHHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL-FAGAITSGELTHQYLL 107 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~-fd~iits~~v~~~~l~ 107 (118)
+.+.+++|+.++-.-+..-..-..++.+++++ |.+++++.=+ ..+.+.+++.|+.... .+.++.+.+.+.+..+
T Consensus 490 ~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~----~~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~~ 564 (568)
T PRK11660 490 GKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQ----FQPLRTLARAGIQPIPGRLAFYPTLREALADLL 564 (568)
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCC----hHHHHHHHHCCChhhcCcccccCCHHHHHHHHH
Confidence 68899999999888787778888889999999 9998887522 2467888887775410 1356655555555555
Q ss_pred hc
Q 033480 108 RL 109 (118)
Q Consensus 108 ~~ 109 (118)
++
T Consensus 565 ~~ 566 (568)
T PRK11660 565 RN 566 (568)
T ss_pred hh
Confidence 55
No 243
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=82.28 E-value=0.66 Score=32.01 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=11.8
Q ss_pred EEEeccCcccCCCc
Q 033480 33 WLLDQFGVLHDGKK 46 (118)
Q Consensus 33 ~~~D~DGtL~~~~~ 46 (118)
++||+||||.....
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 79999999997653
No 244
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=81.53 E-value=6.2 Score=30.71 Aligned_cols=43 Identities=30% Similarity=0.516 Sum_probs=33.9
Q ss_pred CCcEEEEecc-----------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQF-----------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~D-----------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+...+.+|.| |...-+.+.+|...+++++|+++|+++++..+-
T Consensus 39 P~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 39 PLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred CceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 4778888854 345555667999999999999999999887763
No 245
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=81.51 E-value=5.3 Score=36.40 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred CcEEE--EeccCcccCCCccCccHHHHHHHHHH----CCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480 30 FKAWL--LDQFGVLHDGKKPYPGAISTLEMLAT----TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (118)
Q Consensus 30 ~~~~~--~D~DGtL~~~~~~~pga~e~L~~Lk~----~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~ 103 (118)
.+.++ +|+|+| . ...+...++++.+++ ..+.++++|+ |+...+.+.|+..+++...||.+|++.....
T Consensus 770 ~~~~via~D~d~~--~--~~~~~l~~~~~~~~~~~~~~~igfv~aTG--R~l~~~~~~l~~~~lp~~~PD~lI~~vGTeI 843 (1050)
T TIGR02468 770 KRLFVIAVDCYDD--K--DLLQIIKNIFEAVRKERMEGSSGFILSTS--MTISEIQSFLKSGGLNPTDFDALICNSGSEL 843 (1050)
T ss_pred ceEEEEEeccCCC--C--ChHHHHHHHHHHHhccccCCceEEEEEcC--CCHHHHHHHHHhCCCCCCCCCEEEeCCCcce
Confidence 45555 799998 2 234455666777752 2356678876 4666788999999998422699887766443
Q ss_pred HH
Q 033480 104 QY 105 (118)
Q Consensus 104 ~~ 105 (118)
-|
T Consensus 844 yy 845 (1050)
T TIGR02468 844 YY 845 (1050)
T ss_pred ec
Confidence 33
No 246
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=81.48 E-value=2.9 Score=37.05 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
-.+++-|++.++|++|++.|+++.++|+- +.......-+.+|+.
T Consensus 512 l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD--~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 512 FLDPPKESTKEAIAALFKNGINVKVLTGD--NEIVTARICQEVGID 555 (867)
T ss_pred eeCCCchhHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHcCCC
Confidence 34577899999999999999999999974 334456677889996
No 247
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=81.32 E-value=1 Score=31.53 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=37.5
Q ss_pred ccchhhHHHHHhhcCCcEEEEeccCcccCCCccC-ccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~-pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
..+.+.+.+.+. +... .+.|+...|.+.. +...++++.+++.|+++.+-||..
T Consensus 45 ~lt~eel~~~I~--~~~~---~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 45 KLTPEYLTKTLD--KYRS---LISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CCCHHHHHHHHH--HhCC---CCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 355566666666 4332 2468666666644 668899999999999999999854
No 248
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=80.53 E-value=1.7 Score=35.36 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-|....++++|+++|.+++++||++.+
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPys 268 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYS 268 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchh
Confidence 467888999999999999999999765
No 249
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=80.01 E-value=4.5 Score=30.69 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHHHhCCCC
Q 033480 49 PGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFD 88 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L~~~gi~ 88 (118)
+.+.++|+.|+++|+++.-+|..+.. .....+.|+.+|++
T Consensus 84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 45666899999999999999988733 34567888999987
No 250
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=79.49 E-value=1.3 Score=30.74 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=12.0
Q ss_pred EEEEeccCcccCCC
Q 033480 32 AWLLDQFGVLHDGK 45 (118)
Q Consensus 32 ~~~~D~DGtL~~~~ 45 (118)
.++||+||||+...
T Consensus 3 ~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 3 VVVSDFDGTITLND 16 (188)
T ss_pred EEEEeCCCcccCCC
Confidence 58999999998764
No 251
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=79.33 E-value=3.7 Score=37.28 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=34.5
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++-|++.++|+.|++.|+++.++|+- +.......-+.+|+.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD--~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGD--FPETAKAIAQEVGII 686 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHcCCC
Confidence 467799999999999999999999975 334456777889985
No 252
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=78.49 E-value=13 Score=33.42 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=41.6
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc--eeehHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG--AITSGEL 101 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~--iits~~v 101 (118)
.++|-|++.++|+.|++.|+++.++|+= +.......-+..|+.... +. ++++.+.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD--~~~TA~aIa~~~Gi~~~~-~~~~vi~G~el 601 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGD--HVETAIAIAKECGIEAEA-ESALVIDGAEL 601 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHcCCCCCC-CceeEeehHHh
Confidence 4578899999999999999999999973 334566777889987653 22 5555553
No 253
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=78.40 E-value=12 Score=29.32 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
.|...++++.++++|+.++|.||+..
T Consensus 144 ~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 144 YPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 57899999999999999999999864
No 254
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=78.31 E-value=5.3 Score=34.10 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=54.9
Q ss_pred HHHHhhcCCcEEEEe---ccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480 22 RHIAETRRFKAWLLD---QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D---~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits 98 (118)
.++..+-....++++ +-|+++-.+.+.||.+|-+.+|++.|++.+.+|+-.+.+ ....-+..|++.+. .=.+.
T Consensus 420 ~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~T--Aa~IA~EAGVDdfi--AeatP 495 (681)
T COG2216 420 DEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT--AAAIAAEAGVDDFI--AEATP 495 (681)
T ss_pred HHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHH--HHHHHHHhCchhhh--hcCCh
Confidence 444442234555555 567888888899999999999999999999999854433 33455668887642 33344
Q ss_pred HHHHHHHHHhcc
Q 033480 99 GELTHQYLLRLI 110 (118)
Q Consensus 99 ~~v~~~~l~~~~ 110 (118)
++ ..+.+++..
T Consensus 496 Ed-K~~~I~~eQ 506 (681)
T COG2216 496 ED-KLALIRQEQ 506 (681)
T ss_pred HH-HHHHHHHHH
Confidence 33 334444443
No 255
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.80 E-value=6 Score=30.59 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.9
Q ss_pred CcEEEEecc-----CcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 30 FKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 30 ~~~~~~D~D-----GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
.+.+.+|.+ |...-+.+.+|+..+++++|+++|+++++..+-
T Consensus 46 ~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 46 NGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 678888864 555556667999999999999999998887653
No 256
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=77.78 E-value=4.5 Score=36.60 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=34.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++-|++.++|++|++.|+++.++|+- +.......-+..|+-
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD--~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGD--NPLTAVHVARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCC
Confidence 4567899999999999999999999974 333455666778884
No 257
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=76.93 E-value=8.9 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=49.3
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.+++-+.|....+.++.+...+-|..|+..|++.+|+=+.++ ++.+.|+++|+...
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp---~I~~~l~~~gie~~ 59 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGP---QIDEMLAKLGIEPE 59 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCch---HHHHHHHHcCCCCe
Confidence 46788899999999999999999999999999999988876543 36689999999876
No 258
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=76.79 E-value=4.3 Score=30.71 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.7
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
.++++.++++.|+++|. ++|+||.++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~ 169 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDP 169 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence 48999999999998886 799999764
No 259
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=76.55 E-value=4.5 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=34.0
Q ss_pred EeccCcccCCCcc---CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 35 LDQFGVLHDGKKP---YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 35 ~D~DGtL~~~~~~---~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-..+|+-..+.+| .+.+.++++.+++.|+.+++.||.--.
T Consensus 82 ~~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 82 ESGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred CCCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 3788888888776 589999999999999999999998533
No 260
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=76.49 E-value=6.1 Score=32.44 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=41.5
Q ss_pred CCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 29 RFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 29 ~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
..+.+++=.++ .+.-.+++-|++.+.+++|++.|+++.++|+-.. ......-+.+|+
T Consensus 326 g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~--~~a~~ia~~lgi 386 (499)
T TIGR01494 326 GLRVLAVASKETLLGLLGLEDPLRDDAKETISELREAGIRVIMLTGDNV--LTAKAIAKELGI 386 (499)
T ss_pred CCEEEEEEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCc
Confidence 56666664444 4456678899999999999999999999997543 333444456775
No 261
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=76.01 E-value=1.7 Score=31.00 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=12.5
Q ss_pred cEEEEeccCcccCCC
Q 033480 31 KAWLLDQFGVLHDGK 45 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~ 45 (118)
..++||+||||+...
T Consensus 1 ~~viFDldgvL~d~~ 15 (199)
T PRK09456 1 MLYIFDLGNVIVDID 15 (199)
T ss_pred CEEEEeCCCccccCc
Confidence 368999999999753
No 262
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.30 E-value=6.6 Score=35.28 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=51.5
Q ss_pred cCCcEEEEeccCccc----CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
++...+.+-++|++. -.+.+-|++..+++.|+++|++++++|+-.+ ......-+.+|++.- |.++..++.
T Consensus 701 ~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~--~aA~svA~~VGi~~V-~aev~P~~K 774 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDND--AAARSVAQQVGIDNV-YAEVLPEQK 774 (951)
T ss_pred cCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCH--HHHHHHHHhhCcceE-EeccCchhh
Confidence 467777788888663 4667899999999999999999999997433 334556677997644 455555544
No 263
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=75.26 E-value=8.8 Score=31.27 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=44.3
Q ss_pred eccCcccCCC-cc--CccHHHHHHHHHHCCCcEEEE-eCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480 36 DQFGVLHDGK-KP--YPGAISTLEMLATTGAKMVVI-SNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (118)
Q Consensus 36 D~DGtL~~~~-~~--~pga~e~L~~Lk~~Gi~v~I~-TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l 106 (118)
+.+|+...+. .+ .|...++++.+++.|+++++. ||++ -......+++..+|++...+ .+-+.+...+..+
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~i-Svka~dpe~h~kl 147 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSF-TVFATDPELRREW 147 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEE-ecccCCHHHHHHH
Confidence 3455444443 43 699999999999999999996 9975 32345667777777653312 3333344444433
No 264
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=75.12 E-value=4.6 Score=26.37 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+++.++++.++++|.+++.+|+++.+
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467889999999999999999998643
No 265
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=73.97 E-value=7.9 Score=26.45 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=37.3
Q ss_pred HHHHhhcCCcE-EEEeccC-cccCCC-------ccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 22 RHIAETRRFKA-WLLDQFG-VLHDGK-------KPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 22 ~~~~~~~~~~~-~~~D~DG-tL~~~~-------~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
...+.+|+++. +||=+|| +|.... ..+|-..++++.++++|+++++++-+
T Consensus 26 A~~a~smg~dV~iF~t~dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 26 ATAAASMGYDVTIFFTMDGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred HHHHHhCCCceEEEEEeccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 45556677775 4567999 444421 24688999999999999999999865
No 266
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=73.02 E-value=3.8 Score=30.34 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=27.4
Q ss_pred cCcccCCCcc--Ccc-HHHHHHHHHHCCCcEEEEeCCC
Q 033480 38 FGVLHDGKKP--YPG-AISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 38 DGtL~~~~~~--~pg-a~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
+|+...+.+| .++ ..++++.+++.|+++++.||+.
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4655566665 355 4689999999999999999986
No 267
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=72.98 E-value=18 Score=24.78 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=36.1
Q ss_pred ccCccHHHHHHHHHHC---CCcEEEEeCC---CCChHHHHHHHHhCCCCCcCCCceee---hHHHHHHHHHhcc
Q 033480 46 KPYPGAISTLEMLATT---GAKMVVISNS---SRRASTTIDKLKSLGFDPSLFAGAIT---SGELTHQYLLRLI 110 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~---Gi~v~I~TN~---~r~~~~~~~~L~~~gi~~~~fd~iit---s~~v~~~~l~~~~ 110 (118)
...+.+.++++.|++. ++++++.-+- +.......+.++++| ||.+++ .-+...+|+++..
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G-----~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG-----FDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC-----CCEEECcCCCHHHHHHHHHHHh
Confidence 3456677788888777 4444443322 122455668899999 356666 3444667777654
No 268
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=72.61 E-value=3.9 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=18.8
Q ss_pred cCCcEEEEeccCcccCCCccCccHH
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAI 52 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~ 52 (118)
+++|+++||++|||+.-..+.....
T Consensus 5 ~~iravtfD~~~tLl~~~~~~~~~y 29 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPPVMEVY 29 (237)
T ss_pred cceEEEEEeCCCceeecCCccHHHH
Confidence 5899999999999997554443333
No 269
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=72.42 E-value=5.7 Score=25.97 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=23.4
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
.-+.+.++++.++++|.+++.+|+++.
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 357789999999999999999999754
No 270
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=72.00 E-value=4.9 Score=30.06 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.7
Q ss_pred cCcccCCCcc--CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 38 FGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 38 DGtL~~~~~~--~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
..+...|.+| .++..++++.|++.|+++.+-||++..
T Consensus 74 ~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 74 LHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred CeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 4455566665 378999999999999999999998753
No 271
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=71.82 E-value=8.9 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCcEEEEecc-----CcccCCCccCccH--HHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----GVLHDGKKPYPGA--ISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL~~~~~~~pga--~e~L~~Lk~~Gi~v~I~TN 70 (118)
+...+.+|+| |...-+.+.+|.. .+++++|+++|+++++..+
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 39 PLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred CcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 4777888854 3444445568888 9999999999999887765
No 272
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=71.59 E-value=8.4 Score=30.21 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCcEEEEecc-----CcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+...+.+|+| +...-+.+.+|...+++++|+++|+++++..+
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 39 PYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEec
Confidence 4778888865 23333445789999999999999999887765
No 273
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=70.91 E-value=24 Score=27.45 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=24.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCCh
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRA 75 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~ 75 (118)
.|...++++.++++|..+.+.||+....
T Consensus 86 ~pdl~eiv~~~~~~g~~v~l~TNG~ll~ 113 (318)
T TIGR03470 86 HPEIDEIVRGLVARKKFVYLCTNALLLE 113 (318)
T ss_pred cccHHHHHHHHHHcCCeEEEecCceehH
Confidence 4889999999999999999999986443
No 274
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=70.70 E-value=12 Score=26.70 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=31.3
Q ss_pred CCcEEEEeccC--cccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 29 RFKAWLLDQFG--VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 29 ~~~~~~~D~DG--tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
.-.+.+-|++- -+.++..+.|++.+++++|-+. +.++|+|...
T Consensus 49 ~~~g~i~~il~ep~fFRnL~V~p~aq~v~keLt~~-y~vYivtaam 93 (180)
T COG4502 49 PECGKIYDILKEPHFFRNLGVQPFAQTVLKELTSI-YNVYIVTAAM 93 (180)
T ss_pred ccCCeeeeeccCcchhhhcCccccHHHHHHHHHhh-heEEEEEecc
Confidence 33445555433 3566677899999999999776 8899999874
No 275
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=70.58 E-value=12 Score=27.85 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHH-HhCCCCCc
Q 033480 51 AISTLEMLATTGAKMVVISNSSRR-ASTTIDKL-KSLGFDPS 90 (118)
Q Consensus 51 a~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L-~~~gi~~~ 90 (118)
+.++|..-.++|=.++++|+.++. .+.+...| +.+.|...
T Consensus 119 A~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m 160 (237)
T COG3700 119 ARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNM 160 (237)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCC
Confidence 444666667889999999998743 34455666 44887654
No 276
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=70.51 E-value=9.4 Score=29.71 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=32.0
Q ss_pred CCcEEEEecc-----CcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+...+.+|+| +...-+...+|...+++++|+++|+++.+..+
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~ 85 (317)
T cd06600 39 PYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVD 85 (317)
T ss_pred CcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEee
Confidence 4778888854 34444456789999999999999999876654
No 277
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=70.24 E-value=6.2 Score=35.73 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=35.4
Q ss_pred CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 39 GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
|.+--.+++-||+.++|+.|++.|+++.++|+-. .+.+...-+..|+-
T Consensus 624 G~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~--~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 624 GATAIEDKLQEGVPETIELLRQAGIKIWVLTGDK--VETAINIGYSCRLL 671 (1057)
T ss_pred EEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCc--HHHHHHHHHHhCCC
Confidence 3344456788999999999999999999999743 23445555666664
No 278
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=70.03 E-value=21 Score=27.79 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=43.0
Q ss_pred hhHHHHHhhcCCcEEEEeccCcccCCC------ccCccHHHHHHHHHHCCCcEEEEe---CC-C-CChHHHHHHHHhCCC
Q 033480 19 NGLRHIAETRRFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGAKMVVIS---NS-S-RRASTTIDKLKSLGF 87 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~Gi~v~I~T---N~-~-r~~~~~~~~L~~~gi 87 (118)
+.+.++.+ .++..+.+.+||.-..+. ..+.-+.+.|+.|++.|+++.+.| ++ + .....+.+.+..+|+
T Consensus 114 ~~~~~l~~-~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv 192 (318)
T TIGR03470 114 KKLDKFEP-SPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGV 192 (318)
T ss_pred HHHHHHHh-CCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCC
Confidence 34555554 356778889999532221 235668899999999999876633 22 1 122345566677886
Q ss_pred C
Q 033480 88 D 88 (118)
Q Consensus 88 ~ 88 (118)
+
T Consensus 193 ~ 193 (318)
T TIGR03470 193 D 193 (318)
T ss_pred C
Confidence 3
No 279
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=69.70 E-value=15 Score=28.65 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.7
Q ss_pred ccchhhHHHHHh---hcCCcEEEEeccCcccCCCcc--CccHHHHHHHHHHCCC--cEEEEeCCCCChHHHHHHHHhCCC
Q 033480 15 FQTLNGLRHIAE---TRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGA--KMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 15 ~~~~~~~~~~~~---~~~~~~~~~D~DGtL~~~~~~--~pga~e~L~~Lk~~Gi--~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
.++.+.+..++. ...++.+. +.+.+| .++..++++.+++.+. .+.+.||..... ...+.|...|+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~-------~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~-~~~~~L~~aGl 115 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIR-------LTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA-RFAAELADAGL 115 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEE-------EECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHH-HHHHHHHHcCC
Confidence 456666666554 12233222 234444 3889999999988764 689999975433 35567777776
Q ss_pred C
Q 033480 88 D 88 (118)
Q Consensus 88 ~ 88 (118)
+
T Consensus 116 ~ 116 (329)
T PRK13361 116 K 116 (329)
T ss_pred C
Confidence 4
No 280
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=67.84 E-value=12 Score=28.40 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=33.4
Q ss_pred ccCcccCCCccC--ccH-HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 37 QFGVLHDGKKPY--PGA-ISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 37 ~DGtL~~~~~~~--pga-~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
..|+.+.+.+|. +.. .++++.+++.|+.+.+.||+.-..+.+.+.+..
T Consensus 126 ~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~ 176 (295)
T TIGR02494 126 GGGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPY 176 (295)
T ss_pred CCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhh
Confidence 356666677653 654 699999999999999999986433344444443
No 281
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=67.82 E-value=4.8 Score=29.73 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=21.8
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
+|+..++++.|+++|+++ |+||..+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~ 164 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDR 164 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCE
Confidence 689999999998899997 8899754
No 282
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=67.54 E-value=15 Score=28.95 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=33.3
Q ss_pred CCcEEEEecc-----CcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+.+.+.+|+| +...-+..-+|...+++++|++.|+++++...
T Consensus 39 P~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~ 85 (332)
T cd06601 39 PLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNIT 85 (332)
T ss_pred CCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEec
Confidence 4788999974 44444556789999999999999999877654
No 283
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=67.19 E-value=11 Score=25.90 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=30.2
Q ss_pred CccHHHHHHHHHHCCC-cE-EEEeCC---C-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480 48 YPGAISTLEMLATTGA-KM-VVISNS---S-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi-~v-~I~TN~---~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~ 107 (118)
++...++++.|+++|. .+ +++-+. + .......+.|+++| |+.+++.+....+.+.
T Consensus 64 ~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~G-----v~~vf~pgt~~~~i~~ 124 (128)
T cd02072 64 EIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMG-----FDRVFAPGTPPEEAIA 124 (128)
T ss_pred HHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcC-----CCEEECcCCCHHHHHH
Confidence 4555666667777654 22 333333 1 12233456788888 4677776665555443
No 284
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=67.12 E-value=16 Score=22.71 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=40.4
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
.+.+++|+-++-.-+.....-..++.+.++++|..+.+..=+ ..+.+.+...|+..
T Consensus 41 ~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~g~~~ 96 (107)
T cd07042 41 LKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAGLN----PQVRELLERAGLLD 96 (107)
T ss_pred ceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEecCC----HHHHHHHHHcCcHH
Confidence 378889998876666666666677888888999887777322 24667888888753
No 285
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=66.99 E-value=9.1 Score=25.25 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+.+.++++.++++|.+++.+|++..+
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 577899999999999999999987643
No 286
>PRK08508 biotin synthase; Provisional
Probab=66.86 E-value=55 Score=24.95 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=43.4
Q ss_pred cchhhHHHHHhh---cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 16 QTLNGLRHIAET---RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.+.+.+.+.. ++.+.+.+=-.|.-++ ...++...++++.+++++..+.+.++.+....+..+.|+..|++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~-~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD-DKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC-cccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 455555544431 3455555521222122 2456777889999988765565544444445667888888888655
No 287
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=66.78 E-value=16 Score=26.60 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=29.6
Q ss_pred CcccCCCcc--Ccc-HHHHHHHHHHCCCcEEEEeCCCCC--hHHHHHHHHh
Q 033480 39 GVLHDGKKP--YPG-AISTLEMLATTGAKMVVISNSSRR--ASTTIDKLKS 84 (118)
Q Consensus 39 GtL~~~~~~--~pg-a~e~L~~Lk~~Gi~v~I~TN~~r~--~~~~~~~L~~ 84 (118)
++-+.+.+| .++ ..++++.+++.|+++.+.||+... .+.+.+.++.
T Consensus 68 ~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 68 GVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 333344554 355 568999999999999999998422 3334444443
No 288
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=66.72 E-value=14 Score=29.16 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=34.6
Q ss_pred hHHHHHhhcCCcEEEEe-ccCcccC-C-Cc--cC--ccHHHHHHHH----HHCCCcEEEEeCCCC
Q 033480 20 GLRHIAETRRFKAWLLD-QFGVLHD-G-KK--PY--PGAISTLEML----ATTGAKMVVISNSSR 73 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D-~DGtL~~-~-~~--~~--pga~e~L~~L----k~~Gi~v~I~TN~~r 73 (118)
.+..+.+ +.++++|+| +|+--+. . .. +. .+..+++.+| ++++-.+.|+.|++-
T Consensus 152 rl~~l~~-kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~ 215 (315)
T TIGR01370 152 YLDRVIA-QGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGE 215 (315)
T ss_pred HHHHHHH-cCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCch
Confidence 4566655 689999999 6774321 1 11 11 3445566666 888888999999864
No 289
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=66.54 E-value=16 Score=27.77 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHHCCC-cEEEEeCCCCChHHHHHHHHhCCC
Q 033480 48 YPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi-~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
.++..++++.+++.|+ .+.+.||+... ......|...|+
T Consensus 70 ~~~l~~iv~~l~~~g~~~v~i~TNG~ll-~~~~~~l~~~g~ 109 (302)
T TIGR02668 70 RKDLIEIIRRIKDYGIKDVSMTTNGILL-EKLAKKLKEAGL 109 (302)
T ss_pred ccCHHHHHHHHHhCCCceEEEEcCchHH-HHHHHHHHHCCC
Confidence 4778899999999888 88999997532 334556666665
No 290
>PRK10658 putative alpha-glucosidase; Provisional
Probab=65.31 E-value=11 Score=32.54 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCcEEEEecc-------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQF-------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~D-------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+...+.+|++ +...-+.+-+|...+++++|+++|+++++..+-
T Consensus 298 P~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P 347 (665)
T PRK10658 298 PLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINP 347 (665)
T ss_pred CceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccC
Confidence 3667888864 344444567899999999999999999888764
No 291
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=65.28 E-value=9.1 Score=26.82 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+.+.++++.++++|.+++.+|+++.+
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 466888999999999999999997643
No 292
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=64.85 E-value=27 Score=26.18 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCC---hHHHHHHHHhCCCCCcCCCceeehHHH-----HHHHHHhccCCCccc
Q 033480 51 AISTLEMLATTGAKMVVISNSSRR---ASTTIDKLKSLGFDPSLFAGAITSGEL-----THQYLLRLIIASSVI 116 (118)
Q Consensus 51 a~e~L~~Lk~~Gi~v~I~TN~~r~---~~~~~~~L~~~gi~~~~fd~iits~~v-----~~~~l~~~~~~~~v~ 116 (118)
..++.+.+++.|.+..|+-+-+.. ..++.+.++.+|+... |...+.+-+. ..+|+.. .|++.+
T Consensus 65 ~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~-~P~~~CsL~~~~~p~i~~F~~~--fGkP~~ 135 (217)
T PF02593_consen 65 TYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVE-FPKPFCSLEENGNPQIDEFAEY--FGKPKV 135 (217)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceee-cCccccccCCCCChhHHHHHHH--hCCceE
Confidence 347777788899998887764322 3478899999998876 6777776553 7788777 555443
No 293
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.15 E-value=23 Score=24.42 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=32.8
Q ss_pred CccHHHHHHHHHHCCC--cEEEEeCCC----CChHHHHHHHHhCCCCCcCCCceee---hHHHHHHHHHhc
Q 033480 48 YPGAISTLEMLATTGA--KMVVISNSS----RRASTTIDKLKSLGFDPSLFAGAIT---SGELTHQYLLRL 109 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi--~v~I~TN~~----r~~~~~~~~L~~~gi~~~~fd~iit---s~~v~~~~l~~~ 109 (118)
.+...++++.|+++|. ..+++-++. .......+.|+++| |+.+++ +-+...+|+++.
T Consensus 66 ~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G-----v~~vF~pgt~~~~iv~~l~~~ 131 (134)
T TIGR01501 66 EIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG-----FDRVFAPGTPPEVVIADLKKD 131 (134)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC-----CCEEECcCCCHHHHHHHHHHH
Confidence 4556667777777765 344555432 11222456788899 366776 444455666653
No 294
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=62.71 E-value=5.3 Score=33.40 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.3
Q ss_pred CCcEEEEeccCcccCCC
Q 033480 29 RFKAWLLDQFGVLHDGK 45 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~ 45 (118)
..+.++||+||||++..
T Consensus 21 ~~~~~~FDfDGTLt~~~ 37 (497)
T PLN02177 21 SNQTVAADLDGTLLISR 37 (497)
T ss_pred cccEEEEecCCcccCCC
Confidence 45679999999999855
No 295
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=62.39 E-value=30 Score=24.92 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=40.1
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCC--CccCccHHHHHHHHHHCCCcEEEEe
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~--~~~~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
++.+++. .+|.++|-+=|-.... ..-+||-.+-.++|+++|+..+++-
T Consensus 36 ~~~~l~~--GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 36 NVSSLFK--GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred EhHHhcC--CceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 5688888 9999999999988776 4568999999999999999754443
No 296
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=62.01 E-value=22 Score=26.82 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=32.4
Q ss_pred CCcEEEEecc-----Ccc--cCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQF-----GVL--HDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL--~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+...+.+|.+ |.. .-+..-+|...+++++|+++|+++++.++.
T Consensus 39 P~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 39 PLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeCh
Confidence 4667888843 233 333456899999999999999999998874
No 297
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=61.20 E-value=25 Score=31.08 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=41.2
Q ss_pred CCcEEEEecc-C-----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCC
Q 033480 29 RFKAWLLDQF-G-----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGF 87 (118)
Q Consensus 29 ~~~~~~~D~D-G-----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi 87 (118)
+...|.+|+| . ...-+..-+|..+.++++|+++|+++++.-|-. .....+.+.+...|.
T Consensus 295 P~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy 360 (772)
T COG1501 295 PLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGY 360 (772)
T ss_pred cceEEEEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCe
Confidence 5788999997 1 233344568999999999999999999988743 211234455555554
No 298
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=60.77 E-value=63 Score=23.99 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=54.2
Q ss_pred ccccccCCCCCccchhhHHHHHh---hcCCcEEEEeccCcccCCC--cc-CccHHHHHHHHHHCCC-cEEEEeCCCCC--
Q 033480 4 KCSVQSNDPHLFQTLNGLRHIAE---TRRFKAWLLDQFGVLHDGK--KP-YPGAISTLEMLATTGA-KMVVISNSSRR-- 74 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~DGtL~~~~--~~-~pga~e~L~~Lk~~Gi-~v~I~TN~~r~-- 74 (118)
-||-|+-+.+.+--.+..+++.. +..+++.++=+.|+|-.-. .| --...+.++++.+-.+ -++++||.+-.
T Consensus 71 ICsd~~Rd~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEGe 150 (198)
T COG0353 71 ICSDESRDKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEGE 150 (198)
T ss_pred CcCCcccCCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccch
Confidence 36777777773323344444332 2359999999999885533 33 3557778888877777 89999997522
Q ss_pred -hH-HHHHHHHhCCCC
Q 033480 75 -AS-TTIDKLKSLGFD 88 (118)
Q Consensus 75 -~~-~~~~~L~~~gi~ 88 (118)
+. -+.+.|+.+++.
T Consensus 151 aTA~YI~~~l~~~~ik 166 (198)
T COG0353 151 ATALYIARLLKPLGLK 166 (198)
T ss_pred HHHHHHHHHHhhcCCe
Confidence 22 244666777665
No 299
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=60.59 E-value=22 Score=27.84 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEEecc-----CcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+...+.+|+| +.+.-+.+.+|...+++++|+++|+++.+..+
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~ 85 (339)
T cd06604 39 PCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIID 85 (339)
T ss_pred CcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEe
Confidence 4777888854 33444456789999999999999999876543
No 300
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=60.18 E-value=27 Score=29.46 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=39.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCC-CC---hHHHHHHHHhCCCCCcCCCc
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSLGFDPSLFAG 94 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~---~~~~~~~L~~~gi~~~~fd~ 94 (118)
+.-..|-+.|+|+.+|+.|.|++|+=|+- +. ...+...|+..|+....|+.
T Consensus 89 dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg 143 (509)
T COG0532 89 DDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGG 143 (509)
T ss_pred cCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCC
Confidence 34568999999999999999999999984 22 34567788888887554444
No 301
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=60.05 E-value=13 Score=26.09 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=23.6
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
.-+.+.++++.++++|.+++.+|+++.
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 357899999999999999999998754
No 302
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=60.03 E-value=8 Score=29.06 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=23.6
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
.+++..++++.|++.+++++++||.++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~ 147 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGR 147 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 368899999999999999999999764
No 303
>PRK15447 putative protease; Provisional
Probab=59.54 E-value=75 Score=24.57 Aligned_cols=77 Identities=10% Similarity=-0.052 Sum_probs=45.6
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~ 107 (118)
..+.+.+.....=.+..--.++..++++.+++.|++++++||+- +...+.....+.+... . +.|+-++-....+++
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~--~-~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENG--E-FLVEANDLGAVRLLA 104 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcC--C-CEEEEeCHHHHHHHH
Confidence 46777777433222222235889999999999999999999874 3222222111222221 2 456656665667777
Q ss_pred h
Q 033480 108 R 108 (118)
Q Consensus 108 ~ 108 (118)
+
T Consensus 105 e 105 (301)
T PRK15447 105 E 105 (301)
T ss_pred h
Confidence 6
No 304
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=59.33 E-value=15 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.8
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-.+..+.++.++++|.+++.+|+++.+
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 466888999999999999999987543
No 305
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=59.28 E-value=13 Score=24.40 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.4
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
-+++.++++.++++|.+++.+|+.+
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678889999999999999999754
No 306
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=58.67 E-value=72 Score=23.61 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=48.6
Q ss_pred hhhHHHHHhhcCCcEEEEeccCcccCCCccCc------cHHHHHHHHHHCCCcEEEEeCCC-CC-----hHHHHHHHHhC
Q 033480 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYP------GAISTLEMLATTGAKMVVISNSS-RR-----ASTTIDKLKSL 85 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~p------ga~e~L~~Lk~~Gi~v~I~TN~~-r~-----~~~~~~~L~~~ 85 (118)
.+.+.+++. .-+..+..+.+++.......+ .-.+.++.|+..|+.++-+.||- .. .....+.|+..
T Consensus 27 ~~~v~~~l~--~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~ 104 (250)
T PF09587_consen 27 FEDVKPLLQ--SADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKA 104 (250)
T ss_pred HHHHHHHHh--hCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHC
Confidence 356778888 778999999999976554333 35678899999999987777662 11 22355667777
Q ss_pred CCC
Q 033480 86 GFD 88 (118)
Q Consensus 86 gi~ 88 (118)
|+.
T Consensus 105 gi~ 107 (250)
T PF09587_consen 105 GIP 107 (250)
T ss_pred CCc
Confidence 764
No 307
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=58.60 E-value=22 Score=27.25 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=30.9
Q ss_pred CcEEEEecc-----C--cccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 30 FKAWLLDQF-----G--VLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 30 ~~~~~~D~D-----G--tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
...+.+|.| + ...-+...+|...+++++|+++|+++++..+
T Consensus 40 ~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 40 CDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred eeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 566777752 1 3334456789999999999999999988765
No 308
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=58.40 E-value=16 Score=30.75 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=45.5
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.+++|+.++-.-+..-.....++.++++++|+.+.++--+ ..+.+.+++.|+...
T Consensus 494 ~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~----~~v~~~l~~~gl~~~ 550 (563)
T TIGR00815 494 LQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPN----KAVRSTLKRGGLVEL 550 (563)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCC----hHHHHHHHHCCchhh
Confidence 378999999988778777788888999999999998888532 347788888887543
No 309
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=58.36 E-value=14 Score=25.49 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=23.7
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--+.+.++++.++++|.+++.+|+++.+
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3577889999999999999999987643
No 310
>PRK13937 phosphoheptose isomerase; Provisional
Probab=58.19 E-value=14 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.9
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
.-+.+.++++.++++|.+++.+|+++.+
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4578899999999999999999987543
No 311
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=57.99 E-value=13 Score=24.07 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 49 PGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
+...++++.++++|.+++++|++..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 5688899999999999999999753
No 312
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.76 E-value=49 Score=25.66 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCcEEEEeccC---------cccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQFG---------VLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~DG---------tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+...+.+|.+= ...-+.+.+|...+++++|+++|+++++..+-
T Consensus 44 P~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P 95 (317)
T cd06599 44 PCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKP 95 (317)
T ss_pred CeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 36777777321 12233457899999999999999999876653
No 313
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=57.40 E-value=32 Score=26.81 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=36.1
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
-++.++. +.+++++.-.|.=. .-+...++|+++.++|++++++|...
T Consensus 217 ~l~~~~~--~~~GlVl~~~G~Gn----~~~~~~~~l~~a~~~gipVV~~sr~~ 263 (313)
T PF00710_consen 217 LLDAALA--GAKGLVLEGYGAGN----VPPALLEALARAVERGIPVVVTSRCP 263 (313)
T ss_dssp HHHHHHT--T-SEEEEEEBTTTB----SSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHhc--cCCEEEEeccCCCC----CCHHHHHHHHHHHhcCceEEEecccc
Confidence 4455555 79999999865433 67889999999999999999998754
No 314
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=57.32 E-value=33 Score=26.53 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHH-CCC-cEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 48 YPGAISTLEMLAT-TGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 48 ~pga~e~L~~Lk~-~Gi-~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.++..++++.+++ .|+ .+.+.||.... ....+.|...|+.
T Consensus 73 ~~~l~~li~~i~~~~gi~~v~itTNG~ll-~~~~~~L~~~gl~ 114 (334)
T TIGR02666 73 RKDLVELVARLAALPGIEDIALTTNGLLL-ARHAKDLKEAGLK 114 (334)
T ss_pred cCCHHHHHHHHHhcCCCCeEEEEeCchhH-HHHHHHHHHcCCC
Confidence 4789999999987 578 79999987533 2345666666653
No 315
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=56.84 E-value=31 Score=31.14 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=35.7
Q ss_pred CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
++|=|++.++++.+++.|+++.++|+-.. .......+.+|+...
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~--~TA~AI~r~iGi~~~ 626 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNK--ETAEAIAREIGIFSE 626 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCH--HHHHHHHHHhCCCcC
Confidence 46779999999999999999999997543 345577788888765
No 316
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=56.80 E-value=36 Score=26.91 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=32.5
Q ss_pred HHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
++.+++ .+.+++++.-.|. .+..+...++|+++.++|++++++|-.
T Consensus 228 l~~~~~-~~~~GiVl~~~G~----Gn~p~~~~~~l~~a~~~Gi~VV~~Sq~ 273 (336)
T TIGR00519 228 IRNYLS-KGYKGIVIEGTGL----GHAPQNKLQELQEASDRGVVVVMTTQC 273 (336)
T ss_pred HHHHHh-CCCCEEEEeeECC----CCCCHHHHHHHHHHHHCCCEEEEeCCC
Confidence 455555 3578888887553 222345689999999999999988864
No 317
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=56.77 E-value=1.4 Score=28.69 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHHCC--CcEEEEeCCCCC
Q 033480 49 PGAISTLEMLATTG--AKMVVISNSSRR 74 (118)
Q Consensus 49 pga~e~L~~Lk~~G--i~v~I~TN~~r~ 74 (118)
+...++++.+++++ +.+.+.||....
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 45778888888888 999999997643
No 318
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=56.76 E-value=56 Score=25.74 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=44.7
Q ss_pred chhhHHHHHhhcCCcEEEEeccCcc------cCCCc-cCccHHHHHHHHHHCCCcEEEEeCCC-CC---hHHHHHHHHhC
Q 033480 17 TLNGLRHIAETRRFKAWLLDQFGVL------HDGKK-PYPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSL 85 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~D~DGtL------~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~---~~~~~~~L~~~ 85 (118)
+.+.++.+.+ .....+.+.+||.- .++.. .++.+.+.++.|++.|+++.+.+--+ .+ ..++.+.+..+
T Consensus 103 ~~~~~~~L~~-~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~l 181 (378)
T PRK05301 103 TEARLAALKD-AGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVEL 181 (378)
T ss_pred CHHHHHHHHH-cCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHc
Confidence 3445555555 35788999999952 22332 56778889999999999876544222 12 23445566677
Q ss_pred CCC
Q 033480 86 GFD 88 (118)
Q Consensus 86 gi~ 88 (118)
|+.
T Consensus 182 gv~ 184 (378)
T PRK05301 182 GAD 184 (378)
T ss_pred CCC
Confidence 765
No 319
>PRK00942 acetylglutamate kinase; Provisional
Probab=56.51 E-value=44 Score=25.42 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+.+.+++-+.|.++.+...++...+-|..|++.|.+++|+++.+. ...+.++.+|+..
T Consensus 22 ~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~---~~~~~~~~~g~~~ 79 (283)
T PRK00942 22 MGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGP---QIDELLKKLGIES 79 (283)
T ss_pred cCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChH---HHHHHHHHCCCCc
Confidence 456789999999887777667777778888999999988887543 2445666677664
No 320
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=55.97 E-value=21 Score=31.41 Aligned_cols=54 Identities=20% Similarity=0.127 Sum_probs=37.6
Q ss_pred hhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCC-CcEEEEeCCCCC
Q 033480 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG-AKMVVISNSSRR 74 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~ 74 (118)
+.+..--.+++.+.+++|.|||++...... ....|+.|-... -.++|+++.+|.
T Consensus 492 ~~~i~~y~~s~~rli~ldyd~t~~~~~~~~--~~~~l~~L~~dp~n~v~i~s~~~r~ 546 (732)
T KOG1050|consen 492 EHIVSDYKKSKKRLILLDYDLTLIPPRSIK--AISILKDLCSDPKNIVYIVSGRGRS 546 (732)
T ss_pred hHhhhhhhhccceEEEecccccccCCCCch--HHHHHHHHhcCCCCeEEEEEccCch
Confidence 333344445689999999998887766555 667777776654 457888877664
No 321
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=55.94 E-value=41 Score=27.83 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=54.4
Q ss_pred CCCCCccchhhHHHHHhhcCCcEEEEe-ccCcccCCC---ccCccHHHHHHHHHHCCCcEEEEeCCC----CChHHHHHH
Q 033480 10 NDPHLFQTLNGLRHIAETRRFKAWLLD-QFGVLHDGK---KPYPGAISTLEMLATTGAKMVVISNSS----RRASTTIDK 81 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~D-~DGtL~~~~---~~~pga~e~L~~Lk~~Gi~v~I~TN~~----r~~~~~~~~ 81 (118)
.+|....++|.++++...=.+. -+.| +++|.=++. ..-..+.|+.++|++.|+..+|+|++. |.-..+.+.
T Consensus 281 ~Dpn~v~PlD~LreLe~EG~IG-~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~ke 359 (431)
T TIGR01917 281 EDADRVIPVDVLRDLEKEGKIG-ELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKE 359 (431)
T ss_pred cCCCeeeeHHHHHHHHHcCCcc-cccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHH
Confidence 4566678888889987722232 2333 445554443 234578889999999999999999763 333567788
Q ss_pred HHhCCCCC
Q 033480 82 LKSLGFDP 89 (118)
Q Consensus 82 L~~~gi~~ 89 (118)
+++.||+.
T Consensus 360 iE~~GIPv 367 (431)
T TIGR01917 360 IERAGIPV 367 (431)
T ss_pred HHHcCCCE
Confidence 89999874
No 322
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.35 E-value=37 Score=25.32 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=31.2
Q ss_pred ccCcccCCCcc--CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 37 QFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 37 ~DGtL~~~~~~--~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.||++.++..+ .+...++++.+++.|.+.+++-|...+.+.+...++.
T Consensus 102 adgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~ 151 (244)
T PRK13125 102 ADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL 151 (244)
T ss_pred CCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 45555544322 4678889999999999998888754444444444543
No 323
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=55.30 E-value=39 Score=26.51 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=32.0
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+.+++ .+++++++.-.|. .+.-+...++|+++.++|++++++|-.
T Consensus 227 ~~~~~-~g~~GiVl~~~G~----Gn~p~~~~~~l~~a~~~gi~VV~~Sq~ 271 (323)
T cd00411 227 RAFLR-AGYKGIVLAGYGA----GNVPTDLIDELEEAAERGVVVVNSTQC 271 (323)
T ss_pred HHHHh-CCCCEEEEEeECC----CCCCHHHHHHHHHHHHCCCEEEEecCC
Confidence 44444 3578888887553 222347889999999999999998864
No 324
>PLN03190 aminophospholipid translocase; Provisional
Probab=54.84 E-value=23 Score=32.81 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=33.5
Q ss_pred CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 39 GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
|.+.-.+++-+|+.++|+.|++.|+++.++|+-.. +.....-...|+
T Consensus 719 G~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~--~tAi~IA~s~~L 765 (1178)
T PLN03190 719 GASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQ--ETAISIGYSSKL 765 (1178)
T ss_pred EEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHHhCC
Confidence 44444567889999999999999999999997432 233344444444
No 325
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=54.81 E-value=17 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+.+.++++.++++|.+++.+|++..+
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467888999999999999999997543
No 326
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=54.65 E-value=21 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.230 Sum_probs=33.2
Q ss_pred ccCcccCCCcc--Cc--cHHHHHHHHHHC-----CCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 37 QFGVLHDGKKP--YP--GAISTLEMLATT-----GAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 37 ~DGtL~~~~~~--~p--ga~e~L~~Lk~~-----Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
++.+...+..+ .+ ...++++.+++. +..+.+.||.........+.|...|+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~ 112 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVN 112 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCC
Confidence 34444444432 23 467888888777 356778888554445677888888874
No 327
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.99 E-value=87 Score=23.11 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=49.1
Q ss_pred cccccCCCCCccc-hhhHHHHH---hhcCCcEEEEeccCcccCCCcc---CccHHHHHHHHHHCCC-cEEEEeCCCCChH
Q 033480 5 CSVQSNDPHLFQT-LNGLRHIA---ETRRFKAWLLDQFGVLHDGKKP---YPGAISTLEMLATTGA-KMVVISNSSRRAS 76 (118)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~D~DGtL~~~~~~---~pga~e~L~~Lk~~Gi-~v~I~TN~~r~~~ 76 (118)
|+-|+-+.. ++| .+...++. .+..|++.+|=+.|.|-.-... --...+.++++++.++ -++++||.+-.-+
T Consensus 71 C~d~~Rd~~-~iCVVE~~~Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~tvEGe 149 (195)
T TIGR00615 71 CSDERRDNS-VICVVEDPKDVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNPTVEGE 149 (195)
T ss_pred CCCCCCCCC-EEEEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCchHH
Confidence 565665555 333 33333332 2336999999999988654332 2356778888876666 4899999763312
Q ss_pred ----HHHHHHHhCCCC
Q 033480 77 ----TTIDKLKSLGFD 88 (118)
Q Consensus 77 ----~~~~~L~~~gi~ 88 (118)
-+.+.|+.+++.
T Consensus 150 ~Ta~yi~~~lk~~~ik 165 (195)
T TIGR00615 150 ATALYIARLLQPFGVK 165 (195)
T ss_pred HHHHHHHHHhhhcCCc
Confidence 233455555543
No 328
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=53.30 E-value=41 Score=22.89 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=46.3
Q ss_pred CCcEEEEecc-CcccC-CC--c-----cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480 29 RFKAWLLDQF-GVLHD-GK--K-----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 29 ~~~~~~~D~D-GtL~~-~~--~-----~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~ 99 (118)
.....+.|++ |-+.. .. . .......+.+.|+.+|+.+.|+++-++. ....|++.|+..+.-.. -+-+
T Consensus 23 ap~F~Ivd~e~g~i~~vev~~np~~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~---a~~~l~~~GIkv~~~~~-~~V~ 98 (121)
T COG1433 23 APYFTIVDVEDGEIKNVEVIENPAASAEKGAGIRIAELLVDEGVDVVIASNIGPN---AYNALKAAGIKVYVAPG-GTVE 98 (121)
T ss_pred CceEEEEEecCCcEEEEEEeecccccccCcchHHHHHHHHHcCCCEEEECccCHH---HHHHHHHcCcEEEecCC-CCHH
Confidence 5666777876 32211 11 1 1233345677889999999999986543 56899999998764222 4444
Q ss_pred HHHHHHHH
Q 033480 100 ELTHQYLL 107 (118)
Q Consensus 100 ~v~~~~l~ 107 (118)
++..+|+.
T Consensus 99 e~i~~~~~ 106 (121)
T COG1433 99 EAIKAFLE 106 (121)
T ss_pred HHHHHHhc
Confidence 55555543
No 329
>PRK04531 acetylglutamate kinase; Provisional
Probab=53.13 E-value=34 Score=27.82 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=49.1
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC-ceeehHHH
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA-GAITSGEL 101 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd-~iits~~v 101 (118)
+++.+++-+.|.++.+. .+...+-|..|++.|++++|+=+.+. ++.+.|+..|+...+.+ .-+|..++
T Consensus 35 ~~~~~VIKiGG~~l~~~--~~~l~~dla~L~~~G~~~VlVHGggp---qI~~~l~~~gie~~~v~G~RVTd~~t 103 (398)
T PRK04531 35 AERFAVIKVGGAVLRDD--LEALASSLSFLQEVGLTPIVVHGAGP---QLDAELDAAGIEKETVNGLRVTSPEA 103 (398)
T ss_pred CCcEEEEEEChHHhhcC--HHHHHHHHHHHHHCCCcEEEEECCCH---HHHHHHHHcCCCcEEECCEecCCHHH
Confidence 46889999999776532 47778888999999999999987642 36688999999765222 23454444
No 330
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=52.90 E-value=38 Score=27.81 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHC--CCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 49 PGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 49 pga~e~L~~Lk~~--Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+.+.+.|+.+++. |+.++|.||+.... ...+.|..+|++
T Consensus 95 e~~~~~l~~~~~~~~~i~i~lsTNG~~l~-e~i~~L~~~gvd 135 (442)
T TIGR01290 95 GKTFQTLELVARQLPDVKLCLSTNGLMLP-EHVDRLVDLGVG 135 (442)
T ss_pred cccHHHHHHHHHhcCCCeEEEECCCCCCH-HHHHHHHHCCCC
Confidence 4588999999887 89999999986433 345666666654
No 331
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=52.40 E-value=9.3 Score=25.16 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=39.3
Q ss_pred CccHHHHHHHHHHC---CCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH-HHHHHH
Q 033480 48 YPGAISTLEMLATT---GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL-THQYLL 107 (118)
Q Consensus 48 ~pga~e~L~~Lk~~---Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v-~~~~l~ 107 (118)
.|...+.+..+.+. ++++.+.||......+..+.+...|..... -.+-+..+. ..+.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~-~~l~s~~~~~~~~~~~ 121 (166)
T PF04055_consen 59 HPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDRIR-ISLESLDEESVLRIIN 121 (166)
T ss_dssp SCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSEEE-EEEBSSSHHHHHHHHS
T ss_pred chhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccEEe-cccccCCHHHhhhhhc
Confidence 47777778788775 899999999875435677888888854332 244455554 455443
No 332
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=52.34 E-value=20 Score=27.35 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=27.4
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
.+=+|+.++++.|+++++|+.|.|.+ -...+...|+..|.
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAG--lgdvI~~vL~q~~~ 129 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAG--LGDVIEEVLRQAGV 129 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEE--EHHHHHHHHHHTT-
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCC--cHHHHHHHHHHcCC
Confidence 34599999999999999999999965 22345667766654
No 333
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=51.73 E-value=19 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.6
Q ss_pred CccHHHHHHHHHHCCCcEEEEe
Q 033480 48 YPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
-+...++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4778999999999999998888
No 334
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=50.93 E-value=69 Score=24.54 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=45.1
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
-+.+++-+.|.++.+....+...+-|..|++.|++++++=+.+. .....++.+|+...
T Consensus 23 ~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~---~i~~~~~~~g~~~~ 80 (284)
T CHL00202 23 GRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGP---EINFWLKQLNISPK 80 (284)
T ss_pred CCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcH---HHHHHHHHCCCCCE
Confidence 46899999998877666667788888899999999999876542 24567788888754
No 335
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=50.59 E-value=1.1e+02 Score=25.08 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=55.0
Q ss_pred ccchhhHHHHHhhcCCcEEEEecc-CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQF-GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA 93 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~D-GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd 93 (118)
..+...+.+.+. +.+.++.--= |+.. ....-.|+.++.+.+.+.. ..-|+-++ + ....++.+|+... |+
T Consensus 294 p~Ti~~~~~~i~--~akti~wNGP~GvfE-~~~F~~GT~~l~~aia~~~-a~sivGGG--d---t~aa~~~~g~~~~-~s 363 (389)
T PRK00073 294 PKTIELFAEIIK--DAKTIVWNGPMGVFE-FENFAKGTKAVAKAIAEST-AFSIIGGG--D---TAAAVEKLGLADK-FS 363 (389)
T ss_pred HHHHHHHHHHHh--hCCEEEEECCCCccc-cccchHHHHHHHHHHHhcC-CeEEEcCC--H---HHHHHHHcCCCCC-cc
Confidence 345556777777 6666553310 1111 1123478888888887654 45555433 2 2356778999988 79
Q ss_pred ceeehHHHHHHHHHhcc
Q 033480 94 GAITSGELTHQYLLRLI 110 (118)
Q Consensus 94 ~iits~~v~~~~l~~~~ 110 (118)
+|-|++.+..+||.-..
T Consensus 364 hiSTGGGA~Le~LeGk~ 380 (389)
T PRK00073 364 HISTGGGASLEFLEGKE 380 (389)
T ss_pred EEcCCcHHHHHHHcCCC
Confidence 99999999999997443
No 336
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=50.15 E-value=50 Score=26.10 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=32.7
Q ss_pred HHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
++.+++ .+++++++.-.|.=.-. .-+...++|+++.++|++++++|-.
T Consensus 226 l~~~~~-~~~~GiVl~~~G~Gn~p--~~~~~~~~l~~~~~~Gi~VV~~Sr~ 273 (335)
T PRK09461 226 VRNFLR-QPVKALILRSYGVGNAP--QNPALLQELKEASERGIVVVNLTQC 273 (335)
T ss_pred HHHHHh-CCCCEEEEccCCCCCCC--CCHHHHHHHHHHHHCCCEEEEeCCC
Confidence 455554 35788888775532111 1267889999999999999988865
No 337
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=49.87 E-value=56 Score=27.05 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=53.9
Q ss_pred CCCCCccchhhHHHHHhhcCCcEEEEeccCcccCCC---ccCccHHHHHHHHHHCCCcEEEEeCCC----CChHHHHHHH
Q 033480 10 NDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK---KPYPGAISTLEMLATTGAKMVVISNSS----RRASTTIDKL 82 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~---~~~pga~e~L~~Lk~~Gi~v~I~TN~~----r~~~~~~~~L 82 (118)
.+|....++|.++++...=.+..+.=-+++|.=++. ..-.-+.|+.++|++.|+..+|+|++. |.-..+.+.+
T Consensus 281 ~Dpn~v~PlD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~kei 360 (431)
T TIGR01918 281 ADPDRVVPVDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEI 360 (431)
T ss_pred cCCCeeeeHHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHH
Confidence 456667888889998772223332222334443332 234778889999999999999999763 3335677888
Q ss_pred HhCCCCC
Q 033480 83 KSLGFDP 89 (118)
Q Consensus 83 ~~~gi~~ 89 (118)
++.||+.
T Consensus 361 E~~GiPv 367 (431)
T TIGR01918 361 ERAGIPV 367 (431)
T ss_pred HHcCCCE
Confidence 9999874
No 338
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=49.74 E-value=12 Score=31.54 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=13.8
Q ss_pred CCcEEEEeccCcccCC
Q 033480 29 RFKAWLLDQFGVLHDG 44 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~ 44 (118)
..+.+++|+||||+..
T Consensus 7 ~~~~~~fD~DGTLlrs 22 (498)
T PLN02499 7 TSYSVVSELEGTLLKD 22 (498)
T ss_pred ccceEEEecccceecC
Confidence 5678999999999984
No 339
>PRK13938 phosphoheptose isomerase; Provisional
Probab=48.89 E-value=24 Score=25.73 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=23.8
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--+.+.++++.++++|.+++.+|+++.+
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4577899999999999999999987643
No 340
>PLN02512 acetylglutamate kinase
Probab=48.66 E-value=67 Score=24.96 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=43.2
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
+-+.+++-+.|.++.+........+-+..|+..|.+++++=+.+. ...+.++.+|+...
T Consensus 46 ~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~---~i~~~~~~~gi~~~ 104 (309)
T PLN02512 46 RGKTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGP---EINSWLKKVGIEPQ 104 (309)
T ss_pred CCCeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcH---HHHHHHHHcCCCCc
Confidence 347799999998887665555566667788899999888876432 35567788888754
No 341
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=48.34 E-value=59 Score=25.45 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=32.1
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
+.+++ .+.+++++.-.|.= +.-+...++|+++.++|++++++|-..
T Consensus 229 ~~~~~-~~~~GlVl~~~G~G----n~p~~~~~~l~~a~~~gipVV~~sq~~ 274 (323)
T smart00870 229 DALLD-SGAKGLVLEGTGAG----NVPPDLLEALKEALERGIPVVRTSRCL 274 (323)
T ss_pred HHHHh-CCCCEEEEEeeCCC----CCCHHHHHHHHHHHHCCCEEEEeccCC
Confidence 44444 35788877775532 233468899999999999999988643
No 342
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.24 E-value=26 Score=25.23 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=23.8
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--+.+.++++.++++|.+++.+|+.+.+
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4677899999999999999999987543
No 343
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=48.09 E-value=65 Score=26.18 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=54.1
Q ss_pred cchhhHHHHHhhcCCcEEEEeccCcc-cCC-CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480 16 QTLNGLRHIAETRRFKAWLLDQFGVL-HDG-KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA 93 (118)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~D~DGtL-~~~-~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd 93 (118)
.+.+.+.+.+. +.+.+|.- |.+ .-+ ...-.|+.++.+.+.+.+...++. ++ + ....++.+|+... |+
T Consensus 300 ~Ti~~~~~~i~--~aktv~wN--GP~GvfE~~~F~~GT~~l~~aia~~~a~sivG-GG--d---t~~a~~~~g~~~~-~s 368 (384)
T PF00162_consen 300 KTIELFSEIIK--KAKTVFWN--GPMGVFEIENFAEGTRALAKAIAKSGAFSIVG-GG--D---TAAAIKKFGLADK-FS 368 (384)
T ss_dssp HHHHHHHHHHH--T-SEEEEE--S-SS-TTSGGGCHHHHHHHHHHHHHTSEEEEE-SH--H---HHHHHHHTTGGGG-SS
T ss_pred HHHHHHHHHHh--CCCeEEEE--CCcccCchhhhhHHHHHHHHHHHhcCCeEEEc-cc--H---HHHHHHhcCcccc-ee
Confidence 45557788888 77776533 111 111 133578999999998775544444 22 2 3466788999887 79
Q ss_pred ceeehHHHHHHHHH
Q 033480 94 GAITSGELTHQYLL 107 (118)
Q Consensus 94 ~iits~~v~~~~l~ 107 (118)
+|-|++.+..+||.
T Consensus 369 hvSTGGGA~L~~Le 382 (384)
T PF00162_consen 369 HVSTGGGAFLEFLE 382 (384)
T ss_dssp EEESSSHHHHHHHT
T ss_pred EEecCcHHHHHHhc
Confidence 99999999999985
No 344
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=48.06 E-value=30 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=24.7
Q ss_pred ccCcccCCCccC-----ccHHHHHHHHHHC-CCcEEEEeCC
Q 033480 37 QFGVLHDGKKPY-----PGAISTLEMLATT-GAKMVVISNS 71 (118)
Q Consensus 37 ~DGtL~~~~~~~-----pga~e~L~~Lk~~-Gi~v~I~TN~ 71 (118)
+.|+...|.+|+ +...++++.+++. +.+.++.||+
T Consensus 64 ~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG 104 (154)
T TIGR02491 64 IDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTG 104 (154)
T ss_pred cCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeC
Confidence 367667777764 4677888888876 6676777765
No 345
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=47.92 E-value=59 Score=25.96 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=29.0
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+++++++.-.|. .+.-+...+.|+++.++|++++++|-.
T Consensus 262 g~~GlVl~g~G~----Gn~p~~~~~al~~a~~~GipVV~~Sr~ 300 (349)
T TIGR00520 262 GAKGIVLAGVGN----GSLSAAGLKVNETAAKLGVPIVRSSRV 300 (349)
T ss_pred CCCEEEEEeECC----CCCCHHHHHHHHHHHHCCCEEEEEccC
Confidence 477777776442 233357888999999999999999864
No 346
>PF13466 STAS_2: STAS domain
Probab=47.12 E-value=58 Score=19.32 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+.+.+. .-+.+.+|+-++=.-+..-+--..++.+.++++|.++.+. |-+ ..+.+.++.+|++
T Consensus 19 l~~~~~--~~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~-~~~---~~~~~ll~~~gld 80 (80)
T PF13466_consen 19 LQALLA--SGRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLT-GPS---PALRRLLELLGLD 80 (80)
T ss_pred HHHHHc--CCCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEE-cCC---HHHHHHHHHhCcC
Confidence 344444 4478999997766655544444556666777788777664 422 2366777777763
No 347
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.94 E-value=39 Score=20.86 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHHHHHHHHHCCCcEEEEeCC
Q 033480 51 AISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 51 a~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
..++++.|++.|+++...|++
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~ 75 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDD 75 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCC
Confidence 566777777777776666654
No 348
>PRK11096 ansB L-asparaginase II; Provisional
Probab=46.85 E-value=59 Score=25.95 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=33.5
Q ss_pred HHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
++.+++ .+.+++++.-.|.= +.-+...++|+++.++|++++++|-..
T Consensus 249 l~~~l~-~~~~GiVl~g~G~G----n~~~~~~~~l~~a~~~GipVV~~Sqc~ 295 (347)
T PRK11096 249 AKALVD-AGYDGIVSAGVGNG----NLYKTVFDTLATAAKNGVAVVRSSRVP 295 (347)
T ss_pred HHHHHh-ccCCEEEEEeECCC----CCCHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 455554 35788887765533 234578899999999999999988653
No 349
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=46.52 E-value=63 Score=24.12 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=28.9
Q ss_pred ccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (118)
Q Consensus 37 ~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~ 83 (118)
.||.+..+.+ ++...++++.+++.|.+.+++-|-..+.+.+...++
T Consensus 105 ~~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~ 150 (242)
T cd04724 105 VDGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAE 150 (242)
T ss_pred CcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh
Confidence 3555555543 467888999999999987765543233344444555
No 350
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=46.25 E-value=79 Score=24.65 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=33.5
Q ss_pred EEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEE---EeCCC-CC---hHHHHHHHHhCCCCCc
Q 033480 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVV---ISNSS-RR---ASTTIDKLKSLGFDPS 90 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I---~TN~~-r~---~~~~~~~L~~~gi~~~ 90 (118)
.+.+-+|+. +...+.+.+.++++.|++.|+++.+ ++... .+ ...+.+.+..+|+..+
T Consensus 199 ~v~i~l~~~--h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 199 TVYVALHAN--HARELTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred cEEEEecCC--ChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeE
Confidence 345555552 1223468899999999999987733 33221 22 2344556666787644
No 351
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.01 E-value=60 Score=23.89 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHhhcCCcEEEEecc---Cc--ccCCCccCccHHHHHHHHHHCCC-cEEEEeCCCCC------hHHHHHHHHhCCCC
Q 033480 21 LRHIAETRRFKAWLLDQF---GV--LHDGKKPYPGAISTLEMLATTGA-KMVVISNSSRR------ASTTIDKLKSLGFD 88 (118)
Q Consensus 21 ~~~~~~~~~~~~~~~D~D---Gt--L~~~~~~~pga~e~L~~Lk~~Gi-~v~I~TN~~r~------~~~~~~~L~~~gi~ 88 (118)
++.+.. .++..+++|.+ +. -.....-..++..+++.|.++|+ +++++++.... ...+.+.++..|+.
T Consensus 72 ~~~l~~-~~iPvV~i~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~ 150 (269)
T cd06287 72 VARLRQ-RGIPVVSIGRPPGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALIVGSARRNSYLEAEAAYRAFAAEHGMP 150 (269)
T ss_pred HHHHHH-cCCCEEEeCCCCCCCCCCCeEeeCcHHHHHHHHHHHHHcCCCcEEEEeCCcccccHHHHHHHHHHHHHHcCCC
Confidence 444433 46788888753 11 01111235678889999999887 67788654321 12344556667765
No 352
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=45.93 E-value=42 Score=18.91 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=26.8
Q ss_pred CcEEEEeccCcccCCCccCccHH---HHHHHHHHCCCcEEEEe
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAI---STLEMLATTGAKMVVIS 69 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~---e~L~~Lk~~Gi~v~I~T 69 (118)
-..+++++||+.++......... +....+...|..+.++.
T Consensus 37 ~~~~~ie~kg~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 79 (80)
T cd01037 37 SAKLVIELKGTFHDGLLRKLRTSEKQERIAFLEADGKKVLRFW 79 (80)
T ss_pred CCCEEEEEECccccCchhhhhhcchHHHHHHHHHCCCEEEEEe
Confidence 35677889998887655433322 56677778888777664
No 353
>PLN02591 tryptophan synthase
Probab=45.77 E-value=56 Score=24.83 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=23.7
Q ss_pred ccCcccCCCccCccHHHHHHHHHHCCCcEEEEe
Q 033480 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 37 ~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
+||+|..+. ++++..++.+.+++.|+..+++-
T Consensus 107 v~GviipDL-P~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 107 VHGLVVPDL-PLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEEe
Confidence 677777665 35888899999999998764444
No 354
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.50 E-value=59 Score=24.86 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=23.4
Q ss_pred ccCcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 37 ~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+||++..+. ++++..++++.+++.|+..+.+-+
T Consensus 120 vdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 120 VKGLIIPDL-PYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred CeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 566666554 457888899999999987655543
No 355
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=45.25 E-value=49 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=28.9
Q ss_pred EEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 34 ~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
++-+-|+.+.+.+.+....+.|..+++.|.+++++++.
T Consensus 3 ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg 40 (239)
T cd04246 3 VQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSA 40 (239)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 44566766666566777888888888889998888874
No 356
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.23 E-value=75 Score=20.92 Aligned_cols=57 Identities=25% Similarity=0.195 Sum_probs=29.6
Q ss_pred cCccHHHHHHHHHHCCC-cE-EEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480 47 PYPGAISTLEMLATTGA-KM-VVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi-~v-~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~ 107 (118)
..+.+.+.++.|++.|. .+ +++-++.. ....+.+..+|++.. | ..=++-+....|++
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~~~--~~~~~~~~~~G~d~~-~-~~~~~~~~~~~~~~ 121 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGIIP--PEDYELLKEMGVAEI-F-GPGTSIEEIIDKIR 121 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCCC--HHHHHHHHHCCCCEE-E-CCCCCHHHHHHHHh
Confidence 44566777888877744 22 33332222 233567778886654 3 23333333444443
No 357
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=45.22 E-value=41 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+.+.+|...+++++|+++|+++++...-
T Consensus 66 d~~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 66 DPERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred ChhhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 3446899999999999999998876653
No 358
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=44.71 E-value=61 Score=24.98 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.7
Q ss_pred CccHHHHHHHHHHC--CCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 48 YPGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 48 ~pga~e~L~~Lk~~--Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
.++..++++.+++. ...+.+.||.... ....+.|...|+
T Consensus 79 ~~~l~~li~~i~~~~~~~~i~itTNG~ll-~~~~~~L~~agl 119 (331)
T PRK00164 79 RKDLEDIIAALAALPGIRDLALTTNGYLL-ARRAAALKDAGL 119 (331)
T ss_pred ccCHHHHHHHHHhcCCCceEEEEcCchhH-HHHHHHHHHcCC
Confidence 37899999999886 3578899987532 234455655555
No 359
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=44.69 E-value=1.1e+02 Score=24.52 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=47.5
Q ss_pred ccccCCCCCccchhhHHHHHhhcCCcEEEEeccCccc--CC-------CccCccHHHHHHHHHHCCCcEEEE---eCCC-
Q 033480 6 SVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLH--DG-------KKPYPGAISTLEMLATTGAKMVVI---SNSS- 72 (118)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~DGtL~--~~-------~~~~pga~e~L~~Lk~~Gi~v~I~---TN~~- 72 (118)
++++|+- +..+...+++...+. .+-+-+||.=. +. ...+..+.+.|+.|++.|+.+.+. |...
T Consensus 105 ~i~TNG~---ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i~~vv~~~n~ 180 (412)
T PRK13745 105 CIQTNGT---LLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVNDFNA 180 (412)
T ss_pred EEeecCE---eCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEEEEEEcCCcc
Confidence 4556653 333455555552333 56678999621 21 123556888999999999986554 3332
Q ss_pred CChHHHHHHHHhCCCC
Q 033480 73 RRASTTIDKLKSLGFD 88 (118)
Q Consensus 73 r~~~~~~~~L~~~gi~ 88 (118)
....++.+.+..+|+.
T Consensus 181 ~~~~e~~~~~~~lg~~ 196 (412)
T PRK13745 181 DYPLDFYHFFKELDCH 196 (412)
T ss_pred ccHHHHHHHHHHcCCC
Confidence 2345677788888875
No 360
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=44.64 E-value=29 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+++.++++.++++|.+++.+||...+
T Consensus 105 T~e~i~al~~ak~~Ga~~I~IT~~~~S 131 (340)
T PRK11382 105 TEEVIKALELGRACGALTAAFTKRADS 131 (340)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467889999999999999999998654
No 361
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=44.59 E-value=45 Score=29.20 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=37.0
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCc------cCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKK------PYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~------~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
++.+. +.+-+++-+-|+.+.+.. .+....+.|.+|+++|+.++++||.
T Consensus 9 ~~~~~--~~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSg 62 (718)
T PLN02418 9 RAFLR--DVKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSG 62 (718)
T ss_pred hhHHh--hCCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34455 567889999887766544 4666778888899999999999987
No 362
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=44.28 E-value=1.2e+02 Score=24.19 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=6.9
Q ss_pred HHHHHCCCcEEEE
Q 033480 56 EMLATTGAKMVVI 68 (118)
Q Consensus 56 ~~Lk~~Gi~v~I~ 68 (118)
+.+++.|+|+..+
T Consensus 337 ~~l~e~GIP~L~i 349 (377)
T TIGR03190 337 RHLEANGIPTLFL 349 (377)
T ss_pred HHHHHCCCCEEEE
Confidence 3445566665444
No 363
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=43.61 E-value=1.3e+02 Score=22.21 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=35.4
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
+.+.+.++. +..+...++|+++|+.|.+..++-|-..+.+.+...++..+
T Consensus 81 gad~i~~H~--------Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D 130 (220)
T PRK08883 81 GASMITFHV--------EASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVD 130 (220)
T ss_pred CCCEEEEcc--------cCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 445555555 33456789999999999999999986555556666666554
No 364
>PLN02282 phosphoglycerate kinase
Probab=43.44 E-value=1.4e+02 Score=24.47 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=55.4
Q ss_pred ccchhhHHHHHhhcCCcEEEEeccCcccCCC------c-cCccHHHHHHHHHH---CCCcEEEEeCCCCChHHHHHHHHh
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGK------K-PYPGAISTLEMLAT---TGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~------~-~~pga~e~L~~Lk~---~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
..+...+++++. +.+.+| |++- + .-.|+.++.+.+.+ .|- .-|+-++ + ....++.
T Consensus 302 p~Ti~~~~~~i~--~aktI~-------wNGP~GvfE~~~F~~GT~~l~~aia~~t~~~a-~sivGGG--d---t~aA~~~ 366 (401)
T PLN02282 302 PDSIKTFSEALD--TTKTII-------WNGPMGVFEFEKFAAGTEAIAKKLAELSGKGV-TTIIGGG--D---SVAAVEK 366 (401)
T ss_pred HHHHHHHHHHHh--hCCEEE-------EECCcCCccCcchhHHHHHHHHHHHHhhcCCC-EEEEeCc--H---HHHHHHH
Confidence 344556777777 666655 4432 2 34788888888766 333 4455432 2 3456778
Q ss_pred CCCCCcCCCceeehHHHHHHHHHhcc-CCCcc
Q 033480 85 LGFDPSLFAGAITSGELTHQYLLRLI-IASSV 115 (118)
Q Consensus 85 ~gi~~~~fd~iits~~v~~~~l~~~~-~~~~v 115 (118)
+|+... |++|-|++.+..+||.-.. |+-.+
T Consensus 367 ~g~~~~-~shvSTGGGA~Le~LeGk~LPgi~a 397 (401)
T PLN02282 367 VGLADK-MSHISTGGGASLELLEGKPLPGVLA 397 (401)
T ss_pred cCCcCC-ceEEeCchHHHHHHHcCCCcchHHH
Confidence 999887 6999999999999997544 44433
No 365
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=43.41 E-value=52 Score=23.85 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=42.8
Q ss_pred cCCCCCcc----chhhHHHHHhhcCC--cEEEEeccC-cccCCCccCcc-HHHHHHHHHHCCCcEEEEeCCCCChHHHHH
Q 033480 9 SNDPHLFQ----TLNGLRHIAETRRF--KAWLLDQFG-VLHDGKKPYPG-AISTLEMLATTGAKMVVISNSSRRASTTID 80 (118)
Q Consensus 9 ~~~~~~~~----~~~~~~~~~~~~~~--~~~~~D~DG-tL~~~~~~~pg-a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~ 80 (118)
||.|= .- |++.+.+++. +. +.+=+.|.= -|+......|+ ..+.|+.|.+.|+++.+.+- .+...
T Consensus 81 SwSPC-~~~~~~Ca~~i~~FL~--~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~iM~~-----~df~~ 152 (188)
T PF08210_consen 81 SWSPC-PESDHCCAEKIAEFLK--KHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEIMSY-----KDFEY 152 (188)
T ss_dssp SSS---CC----HHHHHHHHHC--CC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE-SH-----HHHHH
T ss_pred ecCCC-cchhhHHHHHHHHHHH--HhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEEcCH-----HHHHH
Confidence 67776 66 9999999999 66 555555422 33333333332 78999999999999999963 23445
Q ss_pred HHHhC
Q 033480 81 KLKSL 85 (118)
Q Consensus 81 ~L~~~ 85 (118)
.++.+
T Consensus 153 cw~~F 157 (188)
T PF08210_consen 153 CWDNF 157 (188)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 55554
No 366
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=43.34 E-value=51 Score=30.10 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCcEEEEecc-----CcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~D-----GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+.+.+.+|+| ++..-+...+|.-.+++++|+++|++++...+
T Consensus 216 P~DvIwlDidYm~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iid 262 (978)
T PLN02763 216 PCDVVWMDIDYMDGFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLD 262 (978)
T ss_pred CceEEEEehhhhcCCCceeECcccCCCHHHHHHHHHHCCCEEEEEEc
Confidence 4677888866 35555566789999999999999999866654
No 367
>PRK13936 phosphoheptose isomerase; Provisional
Probab=43.21 E-value=35 Score=24.64 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
-+.+.++++.++++|.+++.+|+.+.
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 56788999999999999999998654
No 368
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.16 E-value=30 Score=25.95 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=23.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
.+.+.++++.++++|.+++.+|+++.+
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 566888999999999999999998644
No 369
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.10 E-value=66 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
-+|...+++++|+++|+++++..+
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~ 106 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQI 106 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEec
Confidence 468899999999999999976544
No 370
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=42.89 E-value=1.3e+02 Score=22.64 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=50.2
Q ss_pred ccccccCCCCCccchhhHHHHHhhcCCcEEEEeccCcccCC-C------ccCccHHHHHHHHHHCCCcEEEEeCCCCCh-
Q 033480 4 KCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDG-K------KPYPGAISTLEMLATTGAKMVVISNSSRRA- 75 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~-~------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~- 75 (118)
+|++.+|+ + .......+++.+ .....+-+-+||.-... . ..+..+.+.++.+++.|+.+.+.++-++..
T Consensus 96 ~~~~~TnG-~-~~~~~~~~~l~~-~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~~~n~ 172 (347)
T COG0535 96 RVSLSTNG-T-LLTEEVLEKLKE-AGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVTKINY 172 (347)
T ss_pred EEEEeCCC-c-cCCHHHHHHHHh-cCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEecCcH
Confidence 45666676 3 244455555554 56888888888855332 1 245678889999999998755555444332
Q ss_pred ---HHHHHHHHhCCC
Q 033480 76 ---STTIDKLKSLGF 87 (118)
Q Consensus 76 ---~~~~~~L~~~gi 87 (118)
..+.+.+..+|+
T Consensus 173 ~~l~~~~~~~~~~g~ 187 (347)
T COG0535 173 DELPEIADLAAELGV 187 (347)
T ss_pred HHHHHHHHHHHHcCC
Confidence 345566666775
No 371
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=42.75 E-value=55 Score=21.70 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCCccchhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 11 DPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.+.+...-+.++++++ . -.+++|. ...+.+.+.++.+.++|+++++.|.+- ..+..+.++.
T Consensus 51 ~~~~~~v~~~l~~~~~--~-~DVvIDf--------T~p~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~l~~ 111 (124)
T PF01113_consen 51 GPLGVPVTDDLEELLE--E-ADVVIDF--------TNPDAVYDNLEYALKHGVPLVIGTTGF--SDEQIDELEE 111 (124)
T ss_dssp ST-SSBEBS-HHHHTT--H--SEEEEE--------S-HHHHHHHHHHHHHHT-EEEEE-SSS--HHHHHHHHHH
T ss_pred CCcccccchhHHHhcc--c-CCEEEEc--------CChHHhHHHHHHHHhCCCCEEEECCCC--CHHHHHHHHH
Confidence 3555555678888888 4 4466666 234667788888889999999988642 2233455554
No 372
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=42.14 E-value=77 Score=25.89 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+.+++ ..++++++.-.|.= +.-+...+.|+++.++|++++++|-.
T Consensus 293 ~~~~~-~g~~GiVleg~G~G----~vp~~~~~~l~~a~~~GipVV~tSqc 337 (404)
T TIGR02153 293 EFLVD-KGYKGIVIEGTGLG----HVSEDWIPSIKRATDDGVPVVMTSQC 337 (404)
T ss_pred HHHHh-CCCCEEEEeeECCC----CCCHHHHHHHHHHHHCCCEEEEeCCC
Confidence 44444 35788888875532 22356888999999999998888754
No 373
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=42.07 E-value=78 Score=25.59 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=44.4
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
+-+.+++-+.|.++.+... +...+-|..|++.|++++++-+.+. .+.+.++.+|+...
T Consensus 16 ~~~~~ViK~GG~~~~~~~~-~~~~~~i~~l~~~g~~~vlVHGgg~---~i~~~~~~~g~~~~ 73 (429)
T TIGR01890 16 RGKTFVVGLGGELVEGGNL-GNIVADIALLHSLGVRLVLVHGARP---QIERILAARGRTPH 73 (429)
T ss_pred CCCEEEEEEChhhccCccH-HHHHHHHHHHHHCCCcEEEEcCCCH---HHHHHHHHcCCCce
Confidence 3478999999977754333 5677778888999999999987653 36688889999865
No 374
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=42.00 E-value=47 Score=25.32 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=34.7
Q ss_pred cCCcEEEEeccCcccCCCc-------cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKK-------PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~-------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
+.++-+++.+-|-.+.+.. .+....+.|+++...|+.++|+++++.-
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni 56 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNI 56 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHH
Confidence 4678899999995555432 2445566788888889999999987643
No 375
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=41.96 E-value=44 Score=22.09 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEE-EeCCCCCh---HHHHHHHHhCCCCCc
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVV-ISNSSRRA---STTIDKLKSLGFDPS 90 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I-~TN~~r~~---~~~~~~L~~~gi~~~ 90 (118)
+....+-|.++.|+.|+.-.-+++| ++|.+... -++...|. +++++
T Consensus 16 kTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs--~ipV~ 65 (100)
T COG1911 16 KTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLS--DIPVY 65 (100)
T ss_pred hcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHc--CCcEE
Confidence 4456678899999999876566554 55544221 12333444 66665
No 376
>PRK15482 transcriptional regulator MurR; Provisional
Probab=41.73 E-value=35 Score=25.79 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.8
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
.-+.+.++++.++++|.+++.+|++..+
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s 221 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLADS 221 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3577889999999999999999997644
No 377
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=41.73 E-value=68 Score=23.23 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=47.0
Q ss_pred ccccCCCCCccchhhHHHHHhhcCCcEEEEeccCcccCCC-----ccCccHHHHHHHHHHCCCcEEEEeCC------C-C
Q 033480 6 SVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK-----KPYPGAISTLEMLATTGAKMVVISNS------S-R 73 (118)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~-----~~~pga~e~L~~Lk~~Gi~v~I~TN~------~-r 73 (118)
++.+|+ +.+...+...++++ ....+.+++|+.--... ..+..+.+.++.|++.|+++.+.+.- + .
T Consensus 98 ~i~TNG-~~~~~~~~~~~ll~--~~d~v~isl~~~~~~~~~~~~g~~~~~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ 174 (235)
T TIGR02493 98 CLDTSG-FLGGCTEAADELLE--YTDLVLLDIKHFNPEKYKKLTGVSLQPTLDFAKYLAKRNKPIWIRYVLVPGYTDSEE 174 (235)
T ss_pred EEEcCC-CCCccHHHHHHHHH--hCCEEEEeCCCCCHHHHHHHHCCCcHHHHHHHHHHHhCCCcEEEEEeeeCCcCCCHH
Confidence 344555 32223456788888 67889999998521111 13456889999999999876433221 1 1
Q ss_pred ChHHHHHHHHhCCC
Q 033480 74 RASTTIDKLKSLGF 87 (118)
Q Consensus 74 ~~~~~~~~L~~~gi 87 (118)
....+.+.+..+|.
T Consensus 175 ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 175 DIEALAEFVKTLPN 188 (235)
T ss_pred HHHHHHHHHHhCCC
Confidence 23345566666663
No 378
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=41.68 E-value=1.5e+02 Score=22.98 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=43.1
Q ss_pred hhhHHHHHhhcCCcEEEEeccCccc------CCC-ccCccHHHHHHHHHHCCCcEEEEeCCC-CC---hHHHHHHHHhCC
Q 033480 18 LNGLRHIAETRRFKAWLLDQFGVLH------DGK-KPYPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSLG 86 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~D~DGtL~------~~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~---~~~~~~~L~~~g 86 (118)
.+.++.+.+ .+...+.+.+||.-. .+. ..+..+.+.++.|++.|+++.+.+.-+ .+ ..++.+.+..+|
T Consensus 95 ~e~~~~L~~-~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg 173 (358)
T TIGR02109 95 EARLDALAD-AGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELG 173 (358)
T ss_pred HHHHHHHHh-CCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcC
Confidence 344555554 457889999999642 121 235667888999999998875544222 12 234456666777
Q ss_pred CC
Q 033480 87 FD 88 (118)
Q Consensus 87 i~ 88 (118)
+.
T Consensus 174 ~~ 175 (358)
T TIGR02109 174 AD 175 (358)
T ss_pred CC
Confidence 64
No 379
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=41.67 E-value=87 Score=23.35 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=35.1
Q ss_pred cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
.+...+.|+.. ..+...++|+++|+.|++..++=|-..+.+.+...+..+.
T Consensus 84 ~gad~I~~H~E--------a~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD 134 (223)
T PRK08745 84 AGATTISFHPE--------ASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELD 134 (223)
T ss_pred hCCCEEEEccc--------CcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcC
Confidence 34555555553 2355789999999999999999986555555556665544
No 380
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=41.62 E-value=36 Score=26.05 Aligned_cols=27 Identities=4% Similarity=0.025 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+.+.++++.++++|.+++.+|+.+.+
T Consensus 102 t~~~~~~~~~ak~~g~~vI~iT~~~~s 128 (321)
T PRK11543 102 AKELDLIIPRLEDKSIALLAMTGKPTS 128 (321)
T ss_pred cHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 466889999999999999999997644
No 381
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=41.48 E-value=37 Score=24.76 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.6
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--+.+.++++.++++|.+++.+|+.+.+
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3567899999999999999999987543
No 382
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.45 E-value=82 Score=19.19 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=38.5
Q ss_pred hhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHC--CCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~--Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
+.....+.+..+..+++|++ .. --...++++.|++. +.+++++|+... .......-..|...+
T Consensus 33 ~~~~~~~~~~~~d~iiid~~----~~---~~~~~~~~~~i~~~~~~~~ii~~t~~~~--~~~~~~~~~~g~~~~ 97 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLE----LP---DGDGLELLEQIRQINPSIPIIVVTDEDD--SDEVQEALRAGADDY 97 (112)
T ss_dssp HHHHHHHHHSTESEEEEESS----SS---SSBHHHHHHHHHHHTTTSEEEEEESSTS--HHHHHHHHHTTESEE
T ss_pred HHHHHHhcccCceEEEEEee----ec---cccccccccccccccccccEEEecCCCC--HHHHHHHHHCCCCEE
Confidence 34455556567888999861 11 13456788888775 478999996543 223344446775543
No 383
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=41.24 E-value=74 Score=27.63 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeCCC-CC---hHHHHHHHHhCCCCC
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSLGFDP 89 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~---~~~~~~~L~~~gi~~ 89 (118)
-++-++|-+.|+|+..++.+.+++|+=|.. ++ .+.+++.|-..|+..
T Consensus 234 adDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~ 284 (683)
T KOG1145|consen 234 ADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVV 284 (683)
T ss_pred ccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccH
Confidence 455678999999999999999999999985 22 345677777777764
No 384
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=40.88 E-value=51 Score=26.15 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 50 ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
--..++++|+++|+.+.|.+- ....+.+.|+.+|++
T Consensus 15 fFk~~I~eL~~~GheV~it~R---~~~~~~~LL~~yg~~ 50 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITAR---DKDETEELLDLYGID 50 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEe---ccchHHHHHHHcCCC
Confidence 345678899999999887763 344567888888876
No 385
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=40.86 E-value=61 Score=19.78 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=21.2
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcE-EEEeCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKM-VVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v-~I~TN~ 71 (118)
+++.+.+|... ...+.|..|+++|.++ |-++-+
T Consensus 26 ~~~v~~iD~~~----------~~~~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 26 DVDVVVIDLFD----------FSKEEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp S-SEEEE-SBS------------HHHHHHHHHTT-EEEEEEESS
T ss_pred CCCEEEECCcc----------CCHHHHHHHHHCCCEEEEEEeCc
Confidence 78888888743 5588899999999765 555544
No 386
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=40.81 E-value=49 Score=21.88 Aligned_cols=59 Identities=25% Similarity=0.082 Sum_probs=35.2
Q ss_pred CCCccCccHHHHHHHHHHCCCcEEEEeC-CCCC-hHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480 43 DGKKPYPGAISTLEMLATTGAKMVVISN-SSRR-ASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (118)
Q Consensus 43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN-~~r~-~~~~~~~L~~~gi~~~~fd~iits~~v~~ 103 (118)
+...+.-|..+.++.+++...+++|+.+ .+.. ...+....+..+++.+. ...++.+...
T Consensus 22 raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~--~~~t~~eLG~ 82 (108)
T PTZ00106 22 KSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHH--YAGNNNDLGT 82 (108)
T ss_pred HhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEE--eCCCHHHHHH
Confidence 4456788999999999876666555554 4432 23444555667877531 2345554443
No 387
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=40.74 E-value=54 Score=26.99 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=40.1
Q ss_pred ccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHHHhCCCCCcC
Q 033480 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFDPSL 91 (118)
Q Consensus 41 L~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L~~~gi~~~~ 91 (118)
+.-..++.+.+.-+++.|++.|-.+.+++.++.+ ...+...|...|++.+.
T Consensus 51 i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a 102 (425)
T PRK05476 51 IAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFA 102 (425)
T ss_pred EEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEe
Confidence 3444567788999999999999999999877743 45678888888988754
No 388
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=40.69 E-value=95 Score=23.43 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHCCCcE----EEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhccCC-Ccc
Q 033480 53 STLEMLATTGAKM----VVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIA-SSV 115 (118)
Q Consensus 53 e~L~~Lk~~Gi~v----~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~~~-~~v 115 (118)
.+.+.|++.|+.. +..-|..+....+...++.+.-.. +|-|++.+..+..++.+...+ .+|
T Consensus 19 gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~--~DlIi~~gt~aa~~~~~~~~~~iPV 84 (294)
T PF04392_consen 19 GFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQK--PDLIIAIGTPAAQALAKHLKDDIPV 84 (294)
T ss_dssp HHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS---SEEEEESHHHHHHHHHH-SS-S-E
T ss_pred HHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEeCcHHHHHHHHhcCCCcEE
Confidence 3556677777763 323333344445556666543332 488888888777777766555 443
No 389
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=40.60 E-value=40 Score=24.94 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=19.8
Q ss_pred cCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 47 PYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+.|-..+..++|.+. |+..+|+||+...+ ...+.-+.++..
T Consensus 39 P~~ls~~~~~~l~a~ggv~~IvLTn~dHvR-~A~~ya~~~~a~ 80 (199)
T PF14597_consen 39 PPPLSAHDWKHLDALGGVAWIVLTNRDHVR-AAEDYAEQTGAK 80 (199)
T ss_dssp -----HHHHHHHHHTT--SEEE-SSGGG-T-THHHHHHHS--E
T ss_pred CccccHHHHHHHHhcCCceEEEEeCChhHh-HHHHHHHHhCCe
Confidence 577788889999885 67889999986322 122333445543
No 390
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=40.54 E-value=60 Score=26.11 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=20.4
Q ss_pred HCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 60 TTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 60 ~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
..++.+.|.||+..-.+++.+.|+..++
T Consensus 99 ~~~i~~~i~TNG~ll~~e~~~~l~~~~~ 126 (412)
T PRK13745 99 GRQIDNCIQTNGTLLTDEWCEFFRENNF 126 (412)
T ss_pred CCceEEEEeecCEeCCHHHHHHHHHcCe
Confidence 3466788999987555667788877664
No 391
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=40.48 E-value=48 Score=21.36 Aligned_cols=29 Identities=3% Similarity=0.149 Sum_probs=24.0
Q ss_pred CCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 62 GAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 62 Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
-|+-+++||..+....+.+.|+.++++..
T Consensus 17 ~YKSIlltsqDktP~VI~ral~Khnl~~~ 45 (87)
T cd00153 17 LYKSILLTSQDKAPQVIRRAMEKHNLESE 45 (87)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHhCCCcC
Confidence 36789999998877788899999998754
No 392
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=40.07 E-value=66 Score=23.73 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=29.3
Q ss_pred EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+++-+-|+.+.+.+.+....+.|..+++.|.+++++++.
T Consensus 2 iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg 40 (239)
T cd04261 2 IVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSA 40 (239)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 345566766666566777888888888899988888876
No 393
>PF11181 YflT: Heat induced stress protein YflT
Probab=39.98 E-value=53 Score=21.13 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHCCCc---EEEEeCC
Q 033480 49 PGAISTLEMLATTGAK---MVVISNS 71 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~---v~I~TN~ 71 (118)
..+.+.|+.|+++|+. ++|+|..
T Consensus 10 ~E~~~~I~~L~~~Gy~~ddI~Vva~d 35 (103)
T PF11181_consen 10 EEALSAIEELKAQGYSEDDIYVVAKD 35 (103)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEcC
Confidence 4578899999999995 8999964
No 394
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=39.73 E-value=52 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=33.6
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
.+++..+..+++++++|+|+----+....++..++|+++++.|++++....
T Consensus 84 ~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~ 134 (584)
T TIGR00705 84 AIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGT 134 (584)
T ss_pred HHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 334555544599999999842111112356788899999999999865544
No 395
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.68 E-value=86 Score=23.73 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=27.8
Q ss_pred ccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 37 ~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.||++.++. +++...++++.+++.|...+++=|-..+.+.+...++.
T Consensus 116 vdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~ 162 (256)
T TIGR00262 116 VDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK 162 (256)
T ss_pred CCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh
Confidence 355555543 45788899999999998866444322222333444443
No 396
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=39.66 E-value=1.2e+02 Score=20.53 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCcEEEEeccCcccCCCccC-----ccHHHHHHH-HHHCCCcEEEEe-----CCCCCh-----HHHHHHH-HhCCCCCcC
Q 033480 29 RFKAWLLDQFGVLHDGKKPY-----PGAISTLEM-LATTGAKMVVIS-----NSSRRA-----STTIDKL-KSLGFDPSL 91 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~-----pga~e~L~~-Lk~~Gi~v~I~T-----N~~r~~-----~~~~~~L-~~~gi~~~~ 91 (118)
++-.++.|..|.+......+ ....+.|.+ +++.++.-+|+- |++.+. ....+.| +.++++...
T Consensus 9 riGvA~~d~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~ 88 (130)
T TIGR00250 9 SIGVAGQDITGWTAQGIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVL 88 (130)
T ss_pred eEEEEEECCCCCEEeceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34455666666555433211 122333333 355566666665 443221 1344555 336888777
Q ss_pred CCceeehHHHHHHHHH
Q 033480 92 FAGAITSGELTHQYLL 107 (118)
Q Consensus 92 fd~iits~~v~~~~l~ 107 (118)
+|+-.|+..+...+..
T Consensus 89 ~DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 89 WDERLSTVEAESGLFA 104 (130)
T ss_pred EcCCcCHHHHHHHHHH
Confidence 8888888876665544
No 397
>PRK02947 hypothetical protein; Provisional
Probab=39.57 E-value=34 Score=25.67 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
--+.+.++++.++++|.+++.+|+..
T Consensus 118 ~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 118 RNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 35778999999999999999999975
No 398
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=39.45 E-value=89 Score=25.66 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 22 ~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+.+++ .+++++++.-.|.= +.-+...+.|+++.++|++++++|-.
T Consensus 306 ~~~~~-~g~~GiVleg~G~G----nvp~~~~~~l~~a~~~Gi~VV~tSqc 350 (419)
T PRK04183 306 DFYVD-KGYKGIVIEGTGLG----HVSTDLIPSIKRATDDGIPVVMTSQC 350 (419)
T ss_pred HHHHh-CCCCEEEEEeECCC----CCCHHHHHHHHHHHHCCCEEEEeCCC
Confidence 34444 35788888875532 23346888999999999998888754
No 399
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=39.44 E-value=51 Score=26.69 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=33.9
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+|+.++-...|.+.-...=+.-..++|++|+++|+.++.+|=
T Consensus 186 rYQTVyA~~~GSVAAPTAGLHFT~~ll~~L~~kGv~~a~vTL 227 (366)
T PRK01424 186 RYQTVYSQIEGSVAAPTAGLHFTKDILDKLKAKGIQTAFLTL 227 (366)
T ss_pred hceeeecCCCCceecCCCcCCCCHHHHHHHHHCCCeEEEEEE
Confidence 688888888776665555567788999999999999988883
No 400
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=39.41 E-value=25 Score=25.52 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=38.4
Q ss_pred EEEEeccCcccCCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 32 AWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 32 ~~~~D~DGtL~~~~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+++-+.|.+..+. . ++...+.|..+.+.|.+++|+++.+. .....++.+|+...
T Consensus 2 ~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~---~~~~~~~~~~~~~~ 58 (242)
T PF00696_consen 2 TIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGS---FTDELLEKYGIEPK 58 (242)
T ss_dssp EEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHH---HHHHHHHHCTHTTS
T ss_pred eEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChh---hcCchHHhccCCcc
Confidence 45666777777665 5 77778888888899999999997542 24456666776643
No 401
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=39.36 E-value=28 Score=27.36 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
.+.+++++++|++.|++.+|+|+..
T Consensus 166 ~eda~~a~~~lhq~~v~~vVITS~~ 190 (308)
T KOG2599|consen 166 EEDAKRAVEKLHQKGVKTVVITSFD 190 (308)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeee
Confidence 4678899999999999999999863
No 402
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=39.32 E-value=44 Score=24.98 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCcEEE--EeCCCCC-hHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 51 AISTLEMLATTGAKMVV--ISNSSRR-ASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 51 a~e~L~~Lk~~Gi~v~I--~TN~~r~-~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
..+++++|.+.|..++| +||+++. +..+.+.++..|+... |=+.+..+.
T Consensus 84 l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vl-FIEsic~D~ 135 (222)
T PF01591_consen 84 LEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVL-FIESICDDP 135 (222)
T ss_dssp HHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEE-EEEEE---H
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEE-EEEEEeCCH
Confidence 34577777766666666 5776632 3566777788887766 344444444
No 403
>PRK13844 recombination protein RecR; Provisional
Probab=39.24 E-value=1.6e+02 Score=21.85 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=41.6
Q ss_pred cccccCCCCCccc-hhhHHHH---HhhcCCcEEEEeccCcccCCCc--c-CccHHHHHHHHHHCCC-cEEEEeCCC
Q 033480 5 CSVQSNDPHLFQT-LNGLRHI---AETRRFKAWLLDQFGVLHDGKK--P-YPGAISTLEMLATTGA-KMVVISNSS 72 (118)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~D~DGtL~~~~~--~-~pga~e~L~~Lk~~Gi-~v~I~TN~~ 72 (118)
|+-++-+.+ .+| .++..++ =.+..|++.+|=+.|.|-.-.. | --...+.++++++.++ -++++||.+
T Consensus 75 C~d~~Rd~~-~iCVVE~~~Dv~aiE~t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~~~~v~EVIlAt~~t 149 (200)
T PRK13844 75 CSNTNRDDT-KLCIIESMLDMIAIEEAGIYRGKYFVLNGRISPLDGIGPSELKLDILQQIIADRKIDEVILAISPT 149 (200)
T ss_pred CCCCCCCCC-EEEEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCC
Confidence 666666554 333 2333332 2333699999999998854333 3 2356677777776555 489999976
No 404
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=39.20 E-value=25 Score=27.06 Aligned_cols=18 Identities=22% Similarity=0.063 Sum_probs=15.7
Q ss_pred CCcEEEEeccCcccCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKK 46 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~ 46 (118)
+.+.+++|+|+||.+...
T Consensus 88 ~kk~lVLDLDeTLvHss~ 105 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSSL 105 (262)
T ss_pred CCceEEEeCCCccccccc
Confidence 789999999999988763
No 405
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=39.16 E-value=89 Score=19.45 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=34.1
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCC-CCC-hHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNS-SRR-ASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~-~r~-~~~~~~~L~~~gi~~~~fd~iits~~v~~ 103 (118)
..++.-|..+.++.+++...+++|+.+. +.. ...+....+..+++.. .+.+..+...
T Consensus 9 agkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~---~~~s~~eLG~ 67 (82)
T PRK13602 9 AKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVS---KVDSMKKLGK 67 (82)
T ss_pred cCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEE---EECCHHHHHH
Confidence 3457789999999998766666555544 332 2334444566787743 2445544443
No 406
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=39.11 E-value=28 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.5
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
--|.+.+++++.+++|.+++-+|+
T Consensus 115 ~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 115 NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 357889999999999999988884
No 407
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.99 E-value=39 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=38.3
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEe
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
+..+.++ +++.++||+..+=.+--..+--..-+++.+.++|++++|+=
T Consensus 71 Pt~~mL~--~vDvlvfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLD 118 (365)
T PF07075_consen 71 PTPEMLK--GVDVLVFDIQDVGVRFYTYISTLYYVMEAAAENGKPVVVLD 118 (365)
T ss_pred CCHHHHh--CCCEEEEeCccCCchHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4478888 99999999976655554556667778889999999999985
No 408
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=38.93 E-value=42 Score=24.81 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
-+.+.++++.++++|.+++.+|++..
T Consensus 60 t~~~~~~~~~a~~~g~~ii~iT~~~~ 85 (268)
T TIGR00393 60 SLELLNLIPHLKRLSHKIIAFTGSPN 85 (268)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 46788999999999999999998753
No 409
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=38.91 E-value=89 Score=19.33 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=38.9
Q ss_pred CCcEEEEeccCc---ccC-CCcc-Cc----cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGV---LHD-GKKP-YP----GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGt---L~~-~~~~-~p----ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.....++|+++- ... -..+ .. +-....+.|.+.|..++|+.+-+.. ....|+..|+..+
T Consensus 21 a~~f~i~d~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~~~v~~vi~~~iG~~---~~~~l~~~gI~v~ 88 (103)
T cd00851 21 APYFLIYDVETGKIKNVEVIENPAAHATGGAGGKAAEFLADEGVDVVIVGGIGPR---ALNKLRNAGIKVY 88 (103)
T ss_pred CCEEEEEEccCCcEeEEEEecCCCccccCCCchHHHHHHHHcCCCEEEeCCCCcC---HHHHHHHCCCEEE
Confidence 567788888763 111 1111 11 2356778888899999999876543 4578899998765
No 410
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=38.85 E-value=21 Score=23.56 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=25.5
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHC--CCcEEEEeCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~--Gi~v~I~TN~ 71 (118)
++.++++|+| ........++++.++++ ++|++++++.
T Consensus 38 ~i~avvi~~d------~~~~~~~~~ll~~i~~~~~~iPVFl~~~~ 76 (115)
T PF03709_consen 38 DIAAVVISWD------GEEEDEAQELLDKIRERNFGIPVFLLAER 76 (115)
T ss_dssp TEEEEEEECH------HHHHHHHHHHHHHHHHHSTT-EEEEEESC
T ss_pred CeeEEEEEcc------cccchhHHHHHHHHHHhCCCCCEEEEecC
Confidence 5888888887 22234456677777655 6799999985
No 411
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=38.66 E-value=26 Score=25.66 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=38.4
Q ss_pred cccccccCCCCCccchhhHHHHHhh-cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 3 AKCSVQSNDPHLFQTLNGLRHIAET-RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
|-.|++|-+|. ++..++++..... ......+..+ ...+| -.+..+|.+|.+.|....|+|-|
T Consensus 9 AGiS~~SGIP~-fR~~~Glw~~~~~~~~~~~~~~~~-----~~~~P-n~~H~~La~l~~~g~~~~viTQN 71 (206)
T cd01410 9 AGISTSAGIPD-FRGPNGVWTLLPEDKGRRRFSWRF-----RRAEP-TLTHMALVELERAGLLKFVISQN 71 (206)
T ss_pred CcccHhhCCCc-ccCcCCCcccCCccccChHHHhhh-----hcCCC-CHHHHHHHHHHHCCCCceEEecC
Confidence 45789999999 9998887765330 0011111111 11222 23678999999888887788765
No 412
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.62 E-value=1.4e+02 Score=21.54 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=43.8
Q ss_pred chhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC--CC-ChHHHHHHHHhCCCCCc
Q 033480 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS--SR-RASTTIDKLKSLGFDPS 90 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~--~r-~~~~~~~~L~~~gi~~~ 90 (118)
..+..+..++.+++....+++++. .........+.|++++++|+. +++++. +. ....+.+..+++|+...
T Consensus 46 ~~e~~~~~A~~lgipl~~i~~~~~---~e~~~~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~~~~~~gl~~~ 118 (194)
T cd01994 46 NHELLELQAEAMGIPLIRIEISGE---EEDEVEDLKELLRKLKEEGVD-AVVFGAILSEYQRTRVERVCERLGLEPL 118 (194)
T ss_pred CHHHHHHHHHHcCCcEEEEeCCCC---chHHHHHHHHHHHHHHHcCCC-EEEECccccHHHHHHHHHHHHHcCCEEE
Confidence 456667777877899999998662 222335566677777777766 344433 32 22345567788888643
No 413
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=38.42 E-value=2.2e+02 Score=23.30 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=55.2
Q ss_pred cchhhHHHHHhhcCCcEEEEeccCcc-cCCC-ccCccHHHHHHHHHH---CCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 16 QTLNGLRHIAETRRFKAWLLDQFGVL-HDGK-KPYPGAISTLEMLAT---TGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~D~DGtL-~~~~-~~~pga~e~L~~Lk~---~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+...+++++. +.+.+|.-- -+ .-+. ..-.|+.++++.+.+ .+ ..-|+-++ + ....++.+|+...
T Consensus 300 ~Ti~~~~~~i~--~aktI~wNG--P~GvfE~~~F~~GT~~l~~aia~~~~~~-a~sivGGG--d---t~aa~~~~g~~~~ 369 (397)
T cd00318 300 KTIELFAEVIR--KAKTIVWNG--PMGVFEFPAFAKGTKAIADAIAAATKAG-AFSIIGGG--D---TAAAAEKFGLADK 369 (397)
T ss_pred HHHHHHHHHHh--hCCEEEEEC--CCcCccCCcccHHHHHHHHHHHHhccCC-CEEEEeCc--H---HHHHHHHcCCCCC
Confidence 44556777777 666655321 00 0111 234788888887765 33 35566443 2 2356677899887
Q ss_pred CCCceeehHHHHHHHHHhcc-CCCcc
Q 033480 91 LFAGAITSGELTHQYLLRLI-IASSV 115 (118)
Q Consensus 91 ~fd~iits~~v~~~~l~~~~-~~~~v 115 (118)
|++|-|++.+..+||.-.. |+-..
T Consensus 370 -~shvSTGGGA~Le~LeGk~LPgi~a 394 (397)
T cd00318 370 -ISHVSTGGGASLELLEGKELPGVAA 394 (397)
T ss_pred -ceEEcCchHHHHHHHcCCCCchHHh
Confidence 6999999999999998544 44433
No 414
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=38.05 E-value=45 Score=25.21 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.2
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--|.+.++++.++++|.+++.+|+++.+
T Consensus 130 ~T~~vi~al~~Ak~~Ga~~I~It~~~~s 157 (257)
T cd05007 130 RTPYVLGALRYARARGALTIGIACNPGS 157 (257)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4677999999999999999999987643
No 415
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=37.98 E-value=49 Score=25.13 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCcEEEEeccCcccCCC------ccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+.+-+++-+-|+.+.+. ..+..+.+.|.+++.+|++++++++.
T Consensus 8 ~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 8 NAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred hCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 45678888988776522 34677777888888999999998764
No 416
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=37.94 E-value=1.2e+02 Score=20.15 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHC--CCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 49 PGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 49 pga~e~L~~Lk~~--Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+...++++++++. ++++.+.||.........+.|...|..
T Consensus 59 ~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~ 100 (204)
T cd01335 59 PELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLD 100 (204)
T ss_pred HhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCc
Confidence 3788999999998 899999999764234556777666654
No 417
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=37.92 E-value=73 Score=23.29 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=33.8
Q ss_pred EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+++-+.|+++.+. +....+-|..|++.|.+++++++.+. .....++.+|+..
T Consensus 2 ~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~---~~~~~~~~~~~~~ 53 (231)
T TIGR00761 2 IVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGP---EINELLEALGIPP 53 (231)
T ss_pred EEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcH---HHHHHHHHcCCCC
Confidence 3455667666543 55666777778889999888876532 2335566777643
No 418
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=37.91 E-value=1.1e+02 Score=22.45 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=32.0
Q ss_pred hhhHHHHHhhcCCcEEEEeccCcccCCCcc-----CccHHHHHHHHHHCCCcEEE
Q 033480 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKP-----YPGAISTLEMLATTGAKMVV 67 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~-----~pga~e~L~~Lk~~Gi~v~I 67 (118)
.+.+++++. ..+.+.+|+|+.--..... ...+.+.++.|++.|+++.+
T Consensus 114 ~~~~~~ll~--~~d~v~islk~~~~e~~~~~~g~~~~~~l~~i~~l~~~g~~v~i 166 (246)
T PRK11145 114 DPVIDELLD--VTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLAKRNQKTWI 166 (246)
T ss_pred hHHHHHHHH--hCCEEEECCCcCChhhcccccCCChHHHHHHHHHHHhCCCcEEE
Confidence 356677777 6788999999965321111 23466777888888887644
No 419
>PRK06256 biotin synthase; Validated
Probab=37.81 E-value=1e+02 Score=23.81 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=27.8
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
++...++++.+++. ..+-+.++.+....+..+.|+..|+..+
T Consensus 125 ~~~~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 125 VDQVVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAGVDRY 166 (336)
T ss_pred HHHHHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhCCCEE
Confidence 45788888888876 4444444444344567788999997644
No 420
>PLN02825 amino-acid N-acetyltransferase
Probab=37.77 E-value=1.2e+02 Score=25.70 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=45.1
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
+-+.+++-+.|-...+. .++....-|..|+..|++++++=+. ++ ++.+.|+..|+...
T Consensus 16 rgktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVHGg-gp--qI~~~l~~~gi~~~ 73 (515)
T PLN02825 16 RGSTFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVPGT-HV--QIDKLLAERGREPK 73 (515)
T ss_pred CCCEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEcCC-CH--HHHHHHHHcCCCce
Confidence 46778888999666544 4677777888899999999999765 32 46789999999876
No 421
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=37.64 E-value=74 Score=26.73 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=40.1
Q ss_pred cEEEEeccCcccCCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCC----hHHHHHHH-HhCCCCCcC
Q 033480 31 KAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRR----ASTTIDKL-KSLGFDPSL 91 (118)
Q Consensus 31 ~~~~~D~DGtL~~~~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~----~~~~~~~L-~~~gi~~~~ 91 (118)
=+++.--||++..=. ...+--.+.+++|++-|+|.+|+=|+.++ +..+...| +.++.++.+
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlp 214 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLP 214 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 355566788775433 23455566999999999999999998644 23344555 347766543
No 422
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=37.35 E-value=5.7 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=11.3
Q ss_pred cEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 64 KMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 64 ~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
.+.+.|++.+-.+.+...|..+|+..
T Consensus 23 ~i~~~~~s~~ll~~v~~lL~~lGi~~ 48 (77)
T PF14528_consen 23 RISISSKSKELLEDVQKLLLRLGIKA 48 (77)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--E
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCee
Confidence 34444443233345555666666653
No 423
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=37.32 E-value=65 Score=21.37 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=27.8
Q ss_pred CccHHHHHHHHHHCCCcEE-EEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480 48 YPGAISTLEMLATTGAKMV-VISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~-I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~ 99 (118)
.+...++|++..++|.+++ ++|+. ..|...|+.... ..|+++.
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~--------~~La~aGll~~~-~gv~~~~ 124 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGS--------DLLEAAGIPLED-PGVVTAD 124 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchH--------HHHHHcCCCCCC-CcEEEec
Confidence 3567788888888888774 44321 355667774333 5888885
No 424
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=37.30 E-value=57 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
+..+-+.-.+.++.|++.|+.++|+.+
T Consensus 72 ~~~ls~~Q~~~~~~l~~~G~~v~V~~~ 98 (100)
T PF08774_consen 72 GDRLSPNQKEWIDKLREAGFRVAVCRS 98 (100)
T ss_pred CCCcCHHHHHHHHHHHHCCCEEEEEEc
Confidence 356789999999999999999999875
No 425
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=37.29 E-value=55 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.054 Sum_probs=36.9
Q ss_pred cCCCccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHHHHHhCCCCCc
Q 033480 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPS 90 (118)
Q Consensus 42 ~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~~L~~~gi~~~ 90 (118)
.-..++-+.+.-.++.|++.|-.+.++++++- ....+...|...|+..+
T Consensus 36 ~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 36 AACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVF 85 (406)
T ss_pred EEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEE
Confidence 33445567788888899999999988888874 34567788888888765
No 426
>PRK15108 biotin synthase; Provisional
Probab=37.24 E-value=2.1e+02 Score=22.61 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=31.3
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.++...++++.+++.++.++ +|++..+ .+..+.|+..|++
T Consensus 109 ~~e~i~~~i~~ik~~~i~v~-~s~G~ls-~e~l~~LkeAGld 148 (345)
T PRK15108 109 DMPYLEQMVQGVKAMGLETC-MTLGTLS-ESQAQRLANAGLD 148 (345)
T ss_pred hHHHHHHHHHHHHhCCCEEE-EeCCcCC-HHHHHHHHHcCCC
Confidence 46788899999998888764 7776544 5678899999987
No 427
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=37.07 E-value=23 Score=25.66 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=15.0
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++++|+|+|. .+.|+.+|++
T Consensus 3 ~~lILAS~SprR----~elL~~~g~~ 24 (183)
T TIGR00172 3 KELILASQSPRR----KELLEELGIS 24 (183)
T ss_pred CCEEEeCCCHHH----HHHHHHCCCC
Confidence 468888887653 3567777764
No 428
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=37.06 E-value=1.5e+02 Score=24.94 Aligned_cols=48 Identities=21% Similarity=0.108 Sum_probs=33.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHH
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~ 105 (118)
-.++.+.+++|+++|+.++|.... ..+.-+.+|+.. ..++|++...+.
T Consensus 131 ~~e~~~~~~~l~~~G~~~viG~~~------~~~~A~~~gl~~----ili~s~esi~~a 178 (526)
T TIGR02329 131 EEDARSCVNDLRARGIGAVVGAGL------ITDLAEQAGLHG----VFLYSADSVRQA 178 (526)
T ss_pred HHHHHHHHHHHHHCCCCEEECChH------HHHHHHHcCCce----EEEecHHHHHHH
Confidence 357788999999999999987532 335567889874 345666654443
No 429
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=37.04 E-value=46 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
.+.+.++++.++++|.+++.+|++..+
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 466889999999999999999997643
No 430
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=36.73 E-value=57 Score=22.24 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=37.8
Q ss_pred hHHHHHhhcCCc--EEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 20 GLRHIAETRRFK--AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 20 ~~~~~~~~~~~~--~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
.+..+.. +-+ .+.||.|-.-.....+.-...++-+.|+++|..+.+++=.+...+.+.+.|.+.|
T Consensus 60 ~L~~~~~--~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~KGiDD~l~~~G 126 (130)
T PF12965_consen 60 ELAKLAK--PGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGKGIDDLLAAKG 126 (130)
T ss_pred hHHHhcc--CCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCCHhHHHHhcC
Confidence 3445543 333 3457887433333445556677777788899999888744333334555555544
No 431
>PRK14368 Maf-like protein; Provisional
Probab=36.63 E-value=23 Score=25.92 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=15.8
Q ss_pred CCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 62 GAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 62 Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
..+++++|+|+|. .+.|+.+|++
T Consensus 4 ~~~lILAS~SprR----~eLL~~~g~~ 26 (193)
T PRK14368 4 NSPIVLASASPRR----SELLASAGIE 26 (193)
T ss_pred CCcEEEeCCCHHH----HHHHHHCCCC
Confidence 3578889887653 2567777764
No 432
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=36.56 E-value=46 Score=25.55 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+.+.++++.++++|.+++.+|+++.+
T Consensus 107 t~~~~~~~~~ak~~g~~vi~iT~~~~s 133 (326)
T PRK10892 107 SSEILALIPVLKRLHVPLICITGRPES 133 (326)
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 477899999999999999999998643
No 433
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=36.51 E-value=29 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=18.5
Q ss_pred HHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 54 TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 54 ~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
.|++--....+++|+||+......+.+.|..+++..
T Consensus 27 ~Ir~~I~nakkIvV~t~N~kKf~vi~~il~~~~~~~ 62 (154)
T PF11576_consen 27 AIREYILNAKKIVVATNNEKKFKVINDILSKFNLPE 62 (154)
T ss_dssp HHHHHHHH-S-EEE----HHHHHHHHHHHHHTT---
T ss_pred HHHHHHhcCceEEEecCCchHhHHHHHHHHHhcCCc
Confidence 344443445799999998666667778888888753
No 434
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=36.48 E-value=32 Score=31.88 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=32.1
Q ss_pred cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 42 ~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
..++++=+|+.|.|+.|++.|+++.++|+= ..+.+.+.--..++
T Consensus 647 AIEDkLQdgVPetI~~L~~AGIKIWVLTGD--K~ETAiNIg~sC~L 690 (1151)
T KOG0206|consen 647 AIEDKLQDGVPETIAKLAQAGIKIWVLTGD--KQETAINIGYSCRL 690 (1151)
T ss_pred eeechhccCchHHHHHHHHcCCEEEEEcCc--HHHHHHHHHHhhcC
Confidence 345567799999999999999999999973 23445555544444
No 435
>PRK01441 Maf-like protein; Reviewed
Probab=36.37 E-value=24 Score=26.02 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=15.8
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++++|+|+|. .+.|+.+|+.
T Consensus 5 ~~iILAS~SprR----~elL~~~Gi~ 26 (207)
T PRK01441 5 PKLVLASGSPRR----VELLNQAGIE 26 (207)
T ss_pred CcEEEeCCCHHH----HHHHHhcCCC
Confidence 568999987653 3667878874
No 436
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=36.37 E-value=52 Score=26.44 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=32.1
Q ss_pred CCcEEEEeccCcccCCC------ccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+++-+++-+-|..+.+. ..+....+.|.+|+++|++++++++.
T Consensus 4 ~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSG 52 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSG 52 (368)
T ss_pred CCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678888888655432 23556677888999999999999986
No 437
>PLN02621 nicotinamidase
Probab=36.32 E-value=56 Score=23.40 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=11.3
Q ss_pred HHHHHHHCCCcEEEEeCCC
Q 033480 54 TLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 54 ~L~~Lk~~Gi~v~I~TN~~ 72 (118)
....+.++|+.+++++...
T Consensus 144 Ta~~a~~~gy~v~v~~Da~ 162 (197)
T PLN02621 144 TAREAFVRGFRVFFSTDAT 162 (197)
T ss_pred HHHHHHHCCCEEEEecccc
Confidence 4455556666666666653
No 438
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=36.31 E-value=79 Score=19.82 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=28.1
Q ss_pred EEEEeccCcccCCC------ccCccHHHHHHHHHHCC-CcEEEEeC
Q 033480 32 AWLLDQFGVLHDGK------KPYPGAISTLEMLATTG-AKMVVISN 70 (118)
Q Consensus 32 ~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~G-i~v~I~TN 70 (118)
.++|--+|+.+-.. .-.+...+.+++|.+.| .++.+|..
T Consensus 38 ~v~~~g~gv~~~~~~~~~~~~~~~~~~~~l~~l~~~g~v~i~~C~~ 83 (122)
T PF02635_consen 38 VVFFHGDGVKLALKDQKPNPEGDPPLQELLKELKEAGGVKIYVCET 83 (122)
T ss_dssp EEEE-GGGGGGGBTTCHCGGCTSHCHHHHHHHHHHTTT-EEEEEHH
T ss_pred EEEEEchHHHHHHhcccccccccccHHHHHHHHHhcCCcEEEEcHH
Confidence 37788889664332 23678999999999997 99999974
No 439
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=36.27 E-value=96 Score=24.96 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhccCCCccc
Q 033480 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVI 116 (118)
Q Consensus 50 ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~~~~~v~ 116 (118)
.+.++++..+++|+++=|-.|++.-. .+.++.+|-+.. +.++-|..-..+++++..+.+=|+
T Consensus 109 ~v~~vv~~ak~~~ipIRIGVN~GSL~---~~~~~kyg~~t~--eamveSAl~~v~~le~~~F~divi 170 (346)
T TIGR00612 109 RVRDVVEKARDHGKAMRIGVNHGSLE---RRLLEKYGDATA--EAMVQSALEEAAILEKLGFRNVVL 170 (346)
T ss_pred HHHHHHHHHHHCCCCEEEecCCCCCc---HHHHHHcCCCCH--HHHHHHHHHHHHHHHHCCCCcEEE
Confidence 47779999999999999999975322 256677774432 577877777777888777665444
No 440
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.08 E-value=96 Score=23.59 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=24.6
Q ss_pred ccCcccCCCccCccHHHHHHHHHHCCCcEEE-EeCCC
Q 033480 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVV-ISNSS 72 (118)
Q Consensus 37 ~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I-~TN~~ 72 (118)
+||+|..+. ++++..++++.+++.|+..++ +|.++
T Consensus 118 vdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 118 VDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 566666554 457888899999999986654 66554
No 441
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=36.01 E-value=28 Score=19.49 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84 (118)
Q Consensus 52 ~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~ 84 (118)
.|..++|++.|++..=+|.++|. .+..+|..
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~--vy~kkL~~ 39 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRK--LYEKKLRK 39 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHH--HHHHHHHH
Confidence 46667788888887777766553 35555544
No 442
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=36.01 E-value=89 Score=23.68 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=42.0
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
-+.+++-+.|++..+........+-+..|++.|.+++++-+.+. ...+.++++|+..
T Consensus 14 ~~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~---~~~~~l~~~g~~~ 70 (279)
T cd04250 14 GKTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGP---EINEMLKKLGIES 70 (279)
T ss_pred CCEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcH---HHHHHHHHCCCCC
Confidence 36789999998887766666677777788888988877776532 3457778888764
No 443
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=35.84 E-value=1.9e+02 Score=21.78 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=32.4
Q ss_pred ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
+.-+...+.|+++|+.|.+..++=|-..+-+.+...|..+.
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD 133 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVD 133 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCC
Confidence 45678899999999999999999985555566667777654
No 444
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=35.53 E-value=1.1e+02 Score=19.07 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 50 ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
|+.++.++|.+.|+. .++|.+ ..+.|+..|++
T Consensus 1 e~~~~a~~l~~lG~~-i~AT~g------Ta~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFE-IYATEG------TAKFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSE-EEEEHH------HHHHHHHTT--
T ss_pred CHHHHHHHHHHCCCE-EEEChH------HHHHHHHcCCC
Confidence 456778888888866 456532 44777888887
No 445
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=35.45 E-value=1.1e+02 Score=19.78 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=35.2
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCC-CC-hHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSS-RR-ASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~-~~~~~~~L~~~gi~~~~fd~iits~~v~~~ 104 (118)
...+.-|..+.++.+++...+++|+++.. .. ...+....+..+++.+. ...+..+...+
T Consensus 14 agkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~--~~~tk~eLG~a 74 (99)
T PRK01018 14 TGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYE--YEGSSVELGTL 74 (99)
T ss_pred cCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEE--ECCCHHHHHHH
Confidence 34677899999999988777776666553 22 23344444667887531 12355444433
No 446
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=35.35 E-value=48 Score=24.94 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHH
Q 033480 51 AISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (118)
Q Consensus 51 a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L 82 (118)
..++|.+|++. +.++|+|++.. ....++|
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~--~k~~eQl 29 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDL--PKIQEQL 29 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-H--HHHHHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhH--HHHHHHH
Confidence 36789999765 99999998743 3344555
No 447
>PRK14363 Maf-like protein; Provisional
Probab=35.26 E-value=22 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=13.6
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
++++++|+|+|. .+.|+.+|++
T Consensus 1 ~~iILAS~SprR----~elL~~~G~~ 22 (204)
T PRK14363 1 MRIILASSSPRR----RQLMELLGIE 22 (204)
T ss_pred CcEEEeCCCHHH----HHHHHhCCCC
Confidence 357778776643 2556767664
No 448
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.09 E-value=86 Score=24.24 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=32.8
Q ss_pred cccC-CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480 40 VLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (118)
Q Consensus 40 tL~~-~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi 87 (118)
+++. .+...||-..+=+.|++.|+|.+|+|..+... ..+.|+.-|+
T Consensus 64 ~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K--~~d~l~~~g~ 110 (277)
T PRK00994 64 VIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK--VKDAMEEQGL 110 (277)
T ss_pred EEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc--hHHHHHhcCC
Confidence 3443 34457888888888889999999999876433 3477777664
No 449
>PRK06683 hypothetical protein; Provisional
Probab=34.88 E-value=94 Score=19.43 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=35.0
Q ss_pred CCccCccHHHHHHHHHHCCCcE-EEEeCCCCC-hHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480 44 GKKPYPGAISTLEMLATTGAKM-VVISNSSRR-ASTTIDKLKSLGFDPSLFAGAITSGELTH 103 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v-~I~TN~~r~-~~~~~~~L~~~gi~~~~fd~iits~~v~~ 103 (118)
..+..-|..+.++.+++...++ +|+.+.+.. .+.+.+..+..+++.. .+.+..+...
T Consensus 9 agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~---~~~t~~eLG~ 67 (82)
T PRK06683 9 AENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPIT---KVESVRKLGK 67 (82)
T ss_pred CCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEE---EECCHHHHHH
Confidence 3456789999999998665554 566665532 3444555577888754 2335555433
No 450
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=34.79 E-value=65 Score=26.39 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=36.4
Q ss_pred CCccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHHHhCCCCCcC
Q 033480 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFDPSL 91 (118)
Q Consensus 44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L~~~gi~~~~ 91 (118)
..++-+.+.-.++.|++.|-.+.++++|+-+ ...+...|...|+..+.
T Consensus 42 ~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a 90 (413)
T cd00401 42 CLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFA 90 (413)
T ss_pred EEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEE
Confidence 3455677888889999999999999887743 45677888888887653
No 451
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=34.75 E-value=56 Score=19.58 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=18.1
Q ss_pred EEEEeccCcccCCCccCccHHHHHHHHHHCCCcE
Q 033480 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKM 65 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v 65 (118)
.|++|++| . .+...++|+.|++....+
T Consensus 44 ~Ffvd~~~---~----~~~~~~~l~~L~~~~~~~ 70 (74)
T cd04904 44 EFFVDCEV---D----RGDLDQLISSLRRVVADV 70 (74)
T ss_pred EEEEEEEc---C----hHHHHHHHHHHHHhcCeE
Confidence 57899998 1 134688888887754433
No 452
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=34.73 E-value=1.3e+02 Score=22.53 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=40.5
Q ss_pred EEEeccCcccC---CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 33 WLLDQFGVLHD---GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 33 ~~~D~DGtL~~---~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+||+|.-+.- +.-++-+.-++-+.+++.++.++++|=.+.+.+.+.++|-..|+.
T Consensus 114 ~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVk 172 (211)
T COG2344 114 AAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADRLVKAGVK 172 (211)
T ss_pred EEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHHHHHHcCCc
Confidence 35898875332 124667777877888888999999997656667778888776653
No 453
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=34.72 E-value=77 Score=22.96 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=38.5
Q ss_pred hHHHHHhhcCCcEEEEeccCcccCCCc--cCccH-----HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480 20 GLRHIAETRRFKAWLLDQFGVLHDGKK--PYPGA-----ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (118)
Q Consensus 20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~--~~pga-----~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~ 89 (118)
+++.++. ..-+.-.+.+..+.-++- .-||+ ..+...|..+|+..++.|... .+.+.+.++|++.
T Consensus 69 piE~~l~--~~~g~~v~R~~IvEvGnLAs~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~----~lr~~~~rlgl~~ 139 (179)
T PF12261_consen 69 PIEQLLS--RRFGRPVSRSQIVEVGNLASFSPGAARLLFAALAQLLAQQGFEWVVFTATR----QLRNLFRRLGLPP 139 (179)
T ss_pred cHHHHHH--hhcCCCcchhheeEeechhhcCcccHHHHHHHHHHHHHHCCCCEEEEeCCH----HHHHHHHHcCCCc
Confidence 5566665 433333444444444332 12332 334556788999999999753 4778899999874
No 454
>PRK08005 epimerase; Validated
Probab=34.55 E-value=1.9e+02 Score=21.38 Aligned_cols=51 Identities=14% Similarity=-0.038 Sum_probs=34.6
Q ss_pred cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG 86 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g 86 (118)
.+...+.++.. .-+...++|+++|+.|.+..++=|-..+.+.+...+..+.
T Consensus 80 ~gad~It~H~E--------a~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD 130 (210)
T PRK08005 80 IRPGWIFIHAE--------SVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLD 130 (210)
T ss_pred hCCCEEEEccc--------CccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcC
Confidence 34555556553 2345778999999999999999986545455555555444
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.50 E-value=56 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN 70 (118)
|+.+.++||= =|=.-+-+...++.+.++.|.+.|..++++|.
T Consensus 153 M~P~vmLFDE-PTSALDPElv~EVL~vm~~LA~eGmTMivVTH 194 (240)
T COG1126 153 MDPKVMLFDE-PTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194 (240)
T ss_pred CCCCEEeecC-CcccCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5888888883 01112224467788999999999999999995
No 456
>PLN00094 aconitate hydratase 2; Provisional
Probab=34.35 E-value=1.1e+02 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=31.1
Q ss_pred CCcEEEEeccCcccCCC----------------------ccCcc---HHHHHHHHHHCCCcEEEEe
Q 033480 29 RFKAWLLDQFGVLHDGK----------------------KPYPG---AISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~----------------------~~~pg---a~e~L~~Lk~~Gi~v~I~T 69 (118)
.++..+|-++|-...++ ...|| ..+.|++|+++|++++++-
T Consensus 234 ~i~~~vfkv~ge~ntddlspa~~a~sr~diplha~~m~~~~~~~~~~~~~~i~~lk~~g~~iivvG 299 (938)
T PLN00094 234 KITVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNPREGIQGPIAQIEELKKKGHPLAYVG 299 (938)
T ss_pred eeEEEEEEecCcCccccCCCcccccCCCCchhHHHHHhcCCCCCcccHHHHHHHHHHcCCceEEEC
Confidence 57888999999443321 24566 8889999999999998763
No 457
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=34.27 E-value=54 Score=25.39 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.1
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--|.+.++++.++++|.+++.+|+++.+
T Consensus 138 ~T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 138 RTPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3577999999999999999999987653
No 458
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=34.26 E-value=80 Score=25.97 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=39.6
Q ss_pred hhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r 73 (118)
..+.+++. ++ -.|.++|++......-....+++.-+.+.++|+..+||+-+
T Consensus 326 ~dlkei~~--~f--~~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~ 376 (407)
T COG1419 326 EDLKEIIK--QF--SLFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQR 376 (407)
T ss_pred HHHHHHHH--Hh--ccCCcceeEEEcccccCchhHHHHHHHHhCCCeEEEeCCCC
Confidence 35667776 43 45788898887777667777888899999999999999744
No 459
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=34.25 E-value=98 Score=19.07 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=9.5
Q ss_pred HHHHHHHHHCCCcEEEEe
Q 033480 52 ISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 52 ~e~L~~Lk~~Gi~v~I~T 69 (118)
.++++.|.+.|++++ +|
T Consensus 3 ~~~~~~l~~lG~~i~-AT 19 (90)
T smart00851 3 VELAKRLAELGFELV-AT 19 (90)
T ss_pred HHHHHHHHHCCCEEE-Ec
Confidence 455566666666653 44
No 460
>PRK12353 putative amino acid kinase; Reviewed
Probab=34.20 E-value=72 Score=24.97 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=28.9
Q ss_pred cEEEEeccCcc-cCCCcc-------CccHHHHHHHHHHCCCcEEEEeCC
Q 033480 31 KAWLLDQFGVL-HDGKKP-------YPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 31 ~~~~~D~DGtL-~~~~~~-------~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+-+++-+.|-+ ...... +....+.|..|.+.|++++|++++
T Consensus 3 ~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg 51 (314)
T PRK12353 3 KKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGN 51 (314)
T ss_pred cEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45667777743 333322 456777888899999999999987
No 461
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=34.16 E-value=38 Score=27.85 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH-----HHHHHHHHhccCCCccc
Q 033480 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG-----ELTHQYLLRLIIASSVI 116 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~-----~v~~~~l~~~~~~~~v~ 116 (118)
+.+..+..++.++|++++|.=+.+-. ...+.. ..+++++ ..+.+|+++.+|..+++
T Consensus 141 ~YVr~lv~~a~~~G~r~VVfN~RG~~---------g~~LtT---pr~f~ag~t~Dl~~~v~~i~~~~P~a~l~ 201 (409)
T KOG1838|consen 141 SYVRHLVHEAQRKGYRVVVFNHRGLG---------GSKLTT---PRLFTAGWTEDLREVVNHIKKRYPQAPLF 201 (409)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCC---------CCccCC---CceeecCCHHHHHHHHHHHHHhCCCCceE
Confidence 45777899999999888777554311 111110 1222222 22557888888887765
No 462
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=34.10 E-value=53 Score=25.49 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.1
Q ss_pred cCccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
--|.+.++++.++++|.+++.+||++.+
T Consensus 143 ~T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 143 RTPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4677999999999999999999987643
No 463
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=34.06 E-value=97 Score=20.63 Aligned_cols=82 Identities=23% Similarity=0.209 Sum_probs=43.7
Q ss_pred CCcEEEEeccCcccCCCc---cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH-HHH
Q 033480 29 RFKAWLLDQFGVLHDGKK---PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL-THQ 104 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~---~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v-~~~ 104 (118)
+.+.+++-+...-..+.. +.+-- ++.|.+.+++-+++|+. ...++.-+|+--|++.... .+...-+. ...
T Consensus 20 ~~~~~~~~lNd~~aDG~DvSWiWDvd---FE~L~~~~i~~viv~G~--Ra~DmalRLkyAGv~~~~i-~v~~d~~~a~~~ 93 (113)
T PF08353_consen 20 GPKSVLIALNDNYADGRDVSWIWDVD---FEKLADPNIKQVIVSGT--RAEDMALRLKYAGVDEEKI-IVEEDLEEALDA 93 (113)
T ss_pred CCceEEEEecCCCCCCccceEEeecC---HHHHhcCCCCEEEEEee--eHHHHHhHeeecCcchHHe-EecCCHHHHHHH
Confidence 566677655443333322 12333 34566777888888764 3467788888889874211 12322222 333
Q ss_pred HHHhccCCCccc
Q 033480 105 YLLRLIIASSVI 116 (118)
Q Consensus 105 ~l~~~~~~~~v~ 116 (118)
++....+..++|
T Consensus 94 ~~~~~~~~~~~y 105 (113)
T PF08353_consen 94 FLIKSDPTDKVY 105 (113)
T ss_pred HHHhcCCCCcEE
Confidence 344555555543
No 464
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=33.79 E-value=1.2e+02 Score=22.90 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=36.1
Q ss_pred CccchhhHHHHHhhcCCcEEEEeccCccc------CCCccCccHHHHHHHHHHCCCcEEEEe
Q 033480 14 LFQTLNGLRHIAETRRFKAWLLDQFGVLH------DGKKPYPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~D~DGtL~------~~~~~~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
|+...+.+.+++. ..+.+.+|+||.-- .+ .-..-+.+.|+.|.+.|.++.|-+
T Consensus 163 G~~~~~~~~~ll~--~~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~ 221 (295)
T TIGR02494 163 GFTPWETIEKVLP--YVDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRI 221 (295)
T ss_pred CCCCHHHHHHHHh--hCCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEe
Confidence 3444566778877 67888899998521 11 123557788999999888876655
No 465
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=33.43 E-value=2.2e+02 Score=23.34 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=29.0
Q ss_pred ccchhhHHHHHhhcCCcEEEEeccCcccCCC---ccCc-cHHHHHHHHHHCCCcEEEE-eCCC
Q 033480 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGK---KPYP-GAISTLEMLATTGAKMVVI-SNSS 72 (118)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~---~~~p-ga~e~L~~Lk~~Gi~v~I~-TN~~ 72 (118)
..+.+.+.+++... +.||+++... +.+. +..++=+.+++.|+|+..+ |.-+
T Consensus 347 ~~R~~~l~~li~e~-------~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~ 402 (430)
T TIGR03191 347 RIKSEMMLNIARDW-------NVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMG 402 (430)
T ss_pred hHHHHHHHHHHHHH-------CCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCC
Confidence 34666667777622 3466655443 4443 4444335567789997666 5543
No 466
>PRK02141 Maf-like protein; Reviewed
Probab=33.34 E-value=26 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=16.5
Q ss_pred CCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 62 GAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 62 Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
..+++++|+|+|. .+.|+.+|++
T Consensus 8 ~~~iILAS~SprR----~elL~~~G~~ 30 (207)
T PRK02141 8 PPRLILASSSRYR----RELLERLRLP 30 (207)
T ss_pred CCCEEEeCCCHHH----HHHHHHCCCC
Confidence 3678999988753 3567778775
No 467
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=32.85 E-value=1.1e+02 Score=18.56 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=42.8
Q ss_pred CCcEEEEeccC---cccCCC--c---cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480 29 RFKAWLLDQFG---VLHDGK--K---PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (118)
Q Consensus 29 ~~~~~~~D~DG---tL~~~~--~---~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~ 100 (118)
....+++|+++ ++.... . .-.+...+.+.|...|..+.|+.+-+ ......|+..|+..+. ..--+-.+
T Consensus 12 a~~f~I~d~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~v~~li~~~iG---~~~~~~L~~~gI~v~~-~~~~~i~~ 87 (94)
T PF02579_consen 12 APYFLIYDVEDGEIKFVENRNPACNEGGGGGDKIAKFLAEEGVDVLICGGIG---EGAFRALKEAGIKVYQ-GAGGDIEE 87 (94)
T ss_dssp -SEEEEEEEESSCEEEEEEEECECCCSSCHSTHHHHHHHHTTESEEEESCSC---HHHHHHHHHTTSEEEE-STSSBHHH
T ss_pred CCEEEEEEEeCCeEEEEEeeccccccccccchhHHHHHHHcCCCEEEEeCCC---HHHHHHHHHCCCEEEE-cCCCCHHH
Confidence 45677888874 222211 1 11223445666777889988887653 3467899999998762 33333344
Q ss_pred HHHHHH
Q 033480 101 LTHQYL 106 (118)
Q Consensus 101 v~~~~l 106 (118)
+..+|+
T Consensus 88 ~l~~~~ 93 (94)
T PF02579_consen 88 ALEAYL 93 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444544
No 468
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=32.42 E-value=1.9e+02 Score=20.80 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhc
Q 033480 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRL 109 (118)
Q Consensus 52 ~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~ 109 (118)
.+.++.|.+.|+.+.++.+..-....+.+.|+..|+..- -+.++.....+|++..
T Consensus 106 ~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~g~~~v---lveGG~~l~~~fl~~~ 160 (217)
T PRK05625 106 SEKVEELEKKGAEVIVAGGERVDLPDLLEDLYERGIKRL---MVEGGGTLIWSMFKEG 160 (217)
T ss_pred HHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHCCCCEE---EEecCHHHHHHHHHCC
Confidence 455677888888875443222234556777777776532 2557778888888764
No 469
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=32.42 E-value=1.1e+02 Score=24.16 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=40.9
Q ss_pred CcEEEEeccCcccCCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480 30 FKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~ 107 (118)
+=+.|||-+|...... ...-|+ -|+.|++....++|+.+. +..+.+...|+ ..+ .+.+||.+..+...|+
T Consensus 247 i~g~ffD~~G~~~~~~ln~r~igl--~L~~l~~ip~vI~vAgG~-~K~~AI~aaL~----gg~-~n~LITDe~tA~~lL~ 318 (321)
T COG2390 247 ILGRFFDANGQPVDTPLNDRVIGL--SLDDLRQIPKVIAVAGGE-SKAEAILAALR----GGY-INVLITDEATAEALLE 318 (321)
T ss_pred cccceecCCCCCccccccCceecC--CHHHHhcCCcEEEEeCCc-ccHHHHHHHHh----CCC-CCEEEeCHHHHHHHHh
Confidence 5566899998554332 121111 256777766667777654 33333444444 233 3788988888777765
Q ss_pred h
Q 033480 108 R 108 (118)
Q Consensus 108 ~ 108 (118)
.
T Consensus 319 ~ 319 (321)
T COG2390 319 A 319 (321)
T ss_pred c
Confidence 4
No 470
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=32.34 E-value=1.5e+02 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=24.1
Q ss_pred ccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 37 QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 37 ~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
.||+..++... +...+.++.+++.|..+.+.++.
T Consensus 81 ~dgv~vh~~~~-~~~~~~~~~~~~~~~~~g~~~~~ 114 (211)
T cd00429 81 ADIITFHAEAT-DHLHRTIQLIKELGMKAGVALNP 114 (211)
T ss_pred CCEEEECccch-hhHHHHHHHHHHCCCeEEEEecC
Confidence 45554444332 66778899999999998888754
No 471
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=32.20 E-value=2.9e+02 Score=22.75 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=54.9
Q ss_pred chhhHHHHHhhcCCcEEEEec-cCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCce
Q 033480 17 TLNGLRHIAETRRFKAWLLDQ-FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGA 95 (118)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~D~-DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~i 95 (118)
+...+++++. +-+.++..- =|+.. -...-.|+.++.+.+.+....+-|+-+. + ....++.+|+... |++|
T Consensus 298 Ti~~~~~~i~--~AktivwNGP~GVfE-~~~Fa~GT~~v~~aia~~~~a~SiiGGG--d---t~aAi~~~G~~d~-~shI 368 (395)
T COG0126 298 TIELFAEIIK--GAKTIVWNGPMGVFE-FENFAKGTEEVAKAIAKSSGAFSIIGGG--D---TAAAIDKLGLADK-ISHI 368 (395)
T ss_pred HHHHHHHHHh--hCCEEEEeCCcccee-cchhhhhHHHHHHHHHhcCCCeEEECCc--H---HHHHHHHcCcccc-CceE
Confidence 4446677777 666665331 01111 1123478888888887753445555433 2 3356788999887 7999
Q ss_pred eehHHHHHHHHHhcc
Q 033480 96 ITSGELTHQYLLRLI 110 (118)
Q Consensus 96 its~~v~~~~l~~~~ 110 (118)
=|.+.+..+||.-..
T Consensus 369 STGGGAsLe~leGk~ 383 (395)
T COG0126 369 STGGGASLEFLEGKE 383 (395)
T ss_pred ecCchHHHHHhcCCC
Confidence 999999999997554
No 472
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=32.19 E-value=49 Score=19.42 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHHCCCcEEEEe
Q 033480 49 PGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~v~I~T 69 (118)
|.-.+.|+.|.+.|.+|.|.|
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 345788999999999999987
No 473
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.00 E-value=1.6e+02 Score=19.89 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=20.8
Q ss_pred CccHHHHHHHHHHCCC-c-EEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 48 YPGAISTLEMLATTGA-K-MVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi-~-v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
.+.+.++++.|+++|. . .+++-+... . +-.+.++.+|++..
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~-~-~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIP-P-QDFDELKEMGVAEI 109 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCC-h-HhHHHHHHCCCCEE
Confidence 3456667777777654 2 233322222 1 22355777886543
No 474
>PRK00234 Maf-like protein; Reviewed
Probab=31.72 E-value=27 Score=25.42 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=14.2
Q ss_pred cEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 64 KMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 64 ~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
+++++|+|+|. .+.|+.+|++
T Consensus 3 ~iILAS~SprR----~elL~~~gi~ 23 (192)
T PRK00234 3 PLLLASSSPYR----RELLARLRLP 23 (192)
T ss_pred CEEEecCCHHH----HHHHHHCCCC
Confidence 57888887653 3567777765
No 475
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=31.71 E-value=79 Score=20.49 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 52 ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 52 ~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
..+-++|+++|+.+.++|+.. +.+.++..|++
T Consensus 16 lala~~L~~rGh~V~~~~~~~-----~~~~v~~~Gl~ 47 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPD-----FRERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGG-----GHHHHHHTT-E
T ss_pred HHHHHHHhccCCeEEEeeccc-----ceecccccCce
Confidence 356789999999999999742 34556788876
No 476
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.53 E-value=72 Score=22.29 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=20.0
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++++||+......+.+.|.++++.
T Consensus 37 ~r~vV~t~N~~K~~aindvlrrf~l~ 62 (156)
T COG4019 37 KRIVVATNNQKKFKAINDVLRRFCLA 62 (156)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhccc
Confidence 58899999865556677888888875
No 477
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=31.46 E-value=92 Score=25.07 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=26.5
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEe
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
|+.++----|.+.-...=+....++|++|+++|+.++++|
T Consensus 167 YQTVYak~~GsvAAPTAGLHFt~~LL~kLk~kGv~~afvT 206 (348)
T COG0809 167 YQTVYAKEPGSVAAPTAGLHFTEELLEKLKAKGVEIAFVT 206 (348)
T ss_pred ceeeeecCCCccccCcCCCCCCHHHHHHHHHCCceEEEEE
Confidence 4444444444333322235667899999999999998887
No 478
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=76 Score=22.56 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=24.6
Q ss_pred CcEEEEeccCccc---CCCccCccHHHHHHHHHHC
Q 033480 30 FKAWLLDQFGVLH---DGKKPYPGAISTLEMLATT 61 (118)
Q Consensus 30 ~~~~~~D~DGtL~---~~~~~~pga~e~L~~Lk~~ 61 (118)
-..+++|=||++. ....+.+.+.++++.|++.
T Consensus 121 R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 121 RSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4578899999873 4556788899999888763
No 479
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=31.37 E-value=91 Score=27.05 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=28.6
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
+.+.+++|==+.+......-.....+++.+.++|..++|+||.+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 56667776333333222223456678888999899999988865
No 480
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=31.34 E-value=72 Score=25.63 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=29.7
Q ss_pred CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEe
Q 033480 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS 69 (118)
Q Consensus 29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~T 69 (118)
+|+.++=...|.+.-..-=..-..++|++|+++|+.++.+|
T Consensus 165 rYQTVyA~~~GSVAAPTAGLHFt~~ll~~l~~kGv~~a~vT 205 (344)
T TIGR00113 165 RYQTVYSKKPGAVAAPTAGLHFSEELLEKLKAKGVQYAFIT 205 (344)
T ss_pred hccccccCCCCceecCCCccCCCHHHHHHHHHCCCeEEEEE
Confidence 46666666666554433335667889999999999998887
No 481
>PRK06635 aspartate kinase; Reviewed
Probab=31.29 E-value=1.1e+02 Score=24.27 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=31.6
Q ss_pred EEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
-+++-+-|+.+.+...+....+.|..+++.|.+++++.+.
T Consensus 3 ~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg 42 (404)
T PRK06635 3 LIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSA 42 (404)
T ss_pred eEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 4667788888877677788888888888889888777764
No 482
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=33 Score=25.11 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=14.0
Q ss_pred EEEEeccCcccCCCccCcc
Q 033480 32 AWLLDQFGVLHDGKKPYPG 50 (118)
Q Consensus 32 ~~~~D~DGtL~~~~~~~pg 50 (118)
-+-+|+|||+.......|.
T Consensus 8 ~~ciDIDGtit~~~t~~~~ 26 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPY 26 (194)
T ss_pred heeeccCCceecCcccchh
Confidence 3678999999887655443
No 483
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=31.26 E-value=2.7e+02 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=11.9
Q ss_pred ccCcc-HHHHHHHHHH-CCCcEEEE
Q 033480 46 KPYPG-AISTLEMLAT-TGAKMVVI 68 (118)
Q Consensus 46 ~~~pg-a~e~L~~Lk~-~Gi~v~I~ 68 (118)
+++.+ ...+.+.+.+ .|+|+..+
T Consensus 363 ~~~~~e~~~~~~~l~e~~GIP~L~i 387 (413)
T TIGR02260 363 NSFSAGQLLMMREIEKRTGKPAAFI 387 (413)
T ss_pred CcchhhhHHHHHHHHHHcCCCEEEE
Confidence 34444 4445555654 57765444
No 484
>PRK00358 pyrH uridylate kinase; Provisional
Probab=31.16 E-value=65 Score=23.57 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.1
Q ss_pred EEEeccCcccCCC-------ccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480 33 WLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNS 71 (118)
Q Consensus 33 ~~~D~DGtL~~~~-------~~~pga~e~L~~Lk~~Gi~v~I~TN~ 71 (118)
+++-+-|.+..+. ..+....+.|.++++.|.+++|++++
T Consensus 3 iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gG 48 (231)
T PRK00358 3 VLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG 48 (231)
T ss_pred EEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4556667555422 23455666777788889999999985
No 485
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=31.16 E-value=55 Score=27.02 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=0.0
Q ss_pred HhhcCCcEEEEeccCcccCCCccCccHHH---HHHHHHHCCCc
Q 033480 25 AETRRFKAWLLDQFGVLHDGKKPYPGAIS---TLEMLATTGAK 64 (118)
Q Consensus 25 ~~~~~~~~~~~D~DGtL~~~~~~~pga~e---~L~~Lk~~Gi~ 64 (118)
++ ++..+.||+|+||.+-..+-.+... ....++..|++
T Consensus 24 l~--~i~~~GfdmDyTL~~Y~~~~~esLay~~~~~~l~~~Gyp 64 (424)
T KOG2469|consen 24 LE--NIGIVGFDMDYTLARYNLPEMESLAYDLAQFLLKDKGYP 64 (424)
T ss_pred hh--cCcEEeeccccchhhhcccchHHHHHHHHHHHHHhcCCh
No 486
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.97 E-value=59 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.6
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~ 74 (118)
-+.+.+.++.++++|.+++.+|++..+
T Consensus 190 t~e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 190 TREIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred cHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 466888899999999999999998543
No 487
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.88 E-value=1.2e+02 Score=22.16 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=30.1
Q ss_pred cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHH
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L 82 (118)
.+...+.|... ..+...++|+.+++.|.+..++=|-..+.+.+...+
T Consensus 79 ~g~~~i~~H~E--------~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l 125 (201)
T PF00834_consen 79 AGADYITFHAE--------ATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYL 125 (201)
T ss_dssp HT-SEEEEEGG--------GTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG
T ss_pred cCCCEEEEccc--------chhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHh
Confidence 34556666663 456788999999999999999987544333333333
No 488
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=30.74 E-value=1.6e+02 Score=23.59 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.5
Q ss_pred cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (118)
Q Consensus 28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~ 72 (118)
..++++++--.|.= +.-+...+.|+++.++|++++..|-..
T Consensus 253 ~g~~GiVie~~G~G----~~~~~~~~~i~~~~~~gi~VV~sSr~~ 293 (351)
T COG0252 253 SGAKGLVLEGTGSG----NVTPALIESIERASKRGIPVVYSSRCL 293 (351)
T ss_pred cCCCEEEEEEECCC----CCChHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999998876543 677889999999999999988888543
No 489
>KOG4494 consensus Cell surface ATP diphosphohydrolase Apyrase [Nucleotide transport and metabolism]
Probab=30.69 E-value=28 Score=27.57 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=24.7
Q ss_pred ccccCCCCCccchhhHHHHHhhcCCc--EEEEeccCcccCCC
Q 033480 6 SVQSNDPHLFQTLNGLRHIAETRRFK--AWLLDQFGVLHDGK 45 (118)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~DGtL~~~~ 45 (118)
-||++++| ++-+-+.+|+-. ++.- .-+||+||+++-..
T Consensus 298 FvPgT~d~-iIVALKseE~~g-kp~At~itvF~idG~viL~e 337 (352)
T KOG4494|consen 298 FVPGTDDQ-IIVALKSEEIPG-KPVATYITVFDIDGTVILPE 337 (352)
T ss_pred ecCCCCCe-EEEEEeccccCC-CcceEEEEEEEecCeEEcch
Confidence 37899988 666677777744 1122 34599999665443
No 490
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=30.66 E-value=30 Score=25.50 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=16.4
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++++|+|++. .+.|+.+|++
T Consensus 3 ~~LiLAS~SPrR----~elL~~~gi~ 24 (193)
T COG0424 3 PRLILASSSPRR----RELLEQLGIP 24 (193)
T ss_pred ccEEEecCCHHH----HHHHHHCCCC
Confidence 478899988753 3678888874
No 491
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.61 E-value=1.1e+02 Score=21.37 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=28.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (118)
Q Consensus 48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l 106 (118)
..++.+.++++++.|+.++|.... ..+..+.+|++.. -+-++.+..+..+
T Consensus 111 ~~e~~~~i~~~~~~G~~viVGg~~------~~~~A~~~gl~~v---~i~sg~esi~~Al 160 (176)
T PF06506_consen 111 EEEIEAAIKQAKAEGVDVIVGGGV------VCRLARKLGLPGV---LIESGEESIRRAL 160 (176)
T ss_dssp HHHHHHHHHHHHHTT--EEEESHH------HHHHHHHTTSEEE---ESS--HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEECCHH------HHHHHHHcCCcEE---EEEecHHHHHHHH
Confidence 345677888888888887777531 3455577887643 2444455544443
No 492
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=30.56 E-value=67 Score=21.20 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred HCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480 60 TTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (118)
Q Consensus 60 ~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~ 90 (118)
...|+-+++|+++.....+.+.|+++|++..
T Consensus 14 ~~~YKSIlvt~~~~a~~vV~eALeKygL~~e 44 (100)
T cd01781 14 TRPYKTILLSINDNADRIVGEALEKYGLEKS 44 (100)
T ss_pred CCCeEEEEecCCccHHHHHHHHHHHhCCCcc
Confidence 3457889999887666778899999999754
No 493
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=30.55 E-value=3e+02 Score=22.43 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=41.0
Q ss_pred hhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC----CChHHHHHHHHhCCCCCc-CC
Q 033480 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS----RRASTTIDKLKSLGFDPS-LF 92 (118)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~----r~~~~~~~~L~~~gi~~~-~f 92 (118)
.+.+.++..+.++++++.-.|+ ++ +.....++.+.|++++.-|-.. ++.....+.|++.|++.. .|
T Consensus 54 ~e~l~~~~~~~~id~Vi~~~d~-------~l--~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~ 124 (435)
T PRK06395 54 YDLIEDFALKNNVDIVFVGPDP-------VL--ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF 124 (435)
T ss_pred HHHHHHHHHHhCCCEEEECCCh-------HH--HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc
Confidence 3455556664444444433332 22 3355667778888755433221 122345778899999863 23
Q ss_pred CceeehHHHHHHHH
Q 033480 93 AGAITSGELTHQYL 106 (118)
Q Consensus 93 d~iits~~v~~~~l 106 (118)
....+..++...+.
T Consensus 125 ~~~~~~~e~~~~~~ 138 (435)
T PRK06395 125 NACFSEKDAARDYI 138 (435)
T ss_pred ceeCChHHHHHHHH
Confidence 33334444444443
No 494
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=30.52 E-value=25 Score=21.38 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=23.0
Q ss_pred CcEEEEeccCcccCCCccCccHHHHHHHHH
Q 033480 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLA 59 (118)
Q Consensus 30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk 59 (118)
-..++||.|+.-....-++|-+..+.+.++
T Consensus 24 es~iiFDNded~tdSa~llp~ie~a~~~~r 53 (65)
T PF06117_consen 24 ESDIIFDNDEDKTDSAALLPAIEQARADVR 53 (65)
T ss_pred CCCeeecCCCcccchHHHHHHHHHHHHHHH
Confidence 467999999988888777777766666554
No 495
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=30.50 E-value=2.3e+02 Score=22.10 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=39.2
Q ss_pred hhHHHHHhhcCCcEEEEeccCcc--cCC-------CccCccHHHHHHHHHHCCCcEEEEeCCC----CChHHHHHHHHhC
Q 033480 19 NGLRHIAETRRFKAWLLDQFGVL--HDG-------KKPYPGAISTLEMLATTGAKMVVISNSS----RRASTTIDKLKSL 85 (118)
Q Consensus 19 ~~~~~~~~~~~~~~~~~D~DGtL--~~~-------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~----r~~~~~~~~L~~~ 85 (118)
+...+.+..... .+-+-+||.= +.. ...++-+.+.|+.|++.|+++.+.+.-. ....++.+.+..+
T Consensus 106 ~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~ 184 (370)
T PRK13758 106 ESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEK 184 (370)
T ss_pred HHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHc
Confidence 344444442233 6678899942 111 1234557888999999888765544322 2224455666667
Q ss_pred CCC
Q 033480 86 GFD 88 (118)
Q Consensus 86 gi~ 88 (118)
|+.
T Consensus 185 g~~ 187 (370)
T PRK13758 185 DFK 187 (370)
T ss_pred CCC
Confidence 764
No 496
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=30.21 E-value=1.4e+02 Score=24.18 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhccCCCccc
Q 033480 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVI 116 (118)
Q Consensus 49 pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~~~~~v~ 116 (118)
+...++++..+++|+++=|-.|++.-. .+.++++|-+.. +.++-|..-..+++++..+.+=|+
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GSL~---~~~~~~yg~~t~--eamveSAl~~~~~le~~~f~~ivi 179 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGSLE---KDLLEKYGEPTP--EALVESALRHAKILEELGFDDIKI 179 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCccCh---HHHHHHcCCCCH--HHHHHHHHHHHHHHHHCCCCcEEE
Confidence 346778899999999999999976432 355666664322 567777777777777776655443
No 497
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=30.17 E-value=71 Score=20.86 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=27.8
Q ss_pred CCcEEEEeCCCCC-----hHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhcc
Q 033480 62 GAKMVVISNSSRR-----ASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLI 110 (118)
Q Consensus 62 Gi~v~I~TN~~r~-----~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~ 110 (118)
.+++++.|.++.. ...+...|+..+|+-. ..=|+.++..+++++++.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe--~vDIa~~e~~r~~mr~~~ 53 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFE--EVDIAMDEEARQWMRENA 53 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EE--EEETTT-HHHHHHHHHHT
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcE--EEeCcCCHHHHHHHHHhc
Confidence 3566665554321 3457788899998732 244666888999999887
No 498
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=30.14 E-value=1.3e+02 Score=24.11 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=7.1
Q ss_pred HHHHHCCCcEEEE
Q 033480 56 EMLATTGAKMVVI 68 (118)
Q Consensus 56 ~~Lk~~Gi~v~I~ 68 (118)
+.+++.|+|+..+
T Consensus 345 ~~l~e~GIP~L~i 357 (380)
T TIGR02263 345 ARCKEHGIPQIAF 357 (380)
T ss_pred HHHHHCCCCEEEE
Confidence 3445567775443
No 499
>PRK00078 Maf-like protein; Reviewed
Probab=30.06 E-value=31 Score=25.13 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=14.3
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
++++++|+|+|.. +.|+.+|++
T Consensus 1 ~~iILAS~SprR~----elL~~~g~~ 22 (192)
T PRK00078 1 MKIILASASERRQ----ELLKRILED 22 (192)
T ss_pred CcEEEeCCCHHHH----HHHHhCCCC
Confidence 3578888876532 556666664
No 500
>PRK04425 Maf-like protein; Reviewed
Probab=29.80 E-value=33 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=14.9
Q ss_pred CcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480 63 AKMVVISNSSRRASTTIDKLKSLGFD 88 (118)
Q Consensus 63 i~v~I~TN~~r~~~~~~~~L~~~gi~ 88 (118)
.+++++|+|+|. .+.|+.+|++
T Consensus 5 ~~iILAS~SprR----~elL~~~g~~ 26 (196)
T PRK04425 5 LPLVLGTSSVFR----REQMERLGIA 26 (196)
T ss_pred CcEEEeCCCHHH----HHHHHHCCCC
Confidence 568888887653 3567777764
Done!