Query 033482
Match_columns 118
No_of_seqs 109 out of 679
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00039 40S ribosomal protein 100.0 3.9E-41 8.5E-46 237.8 10.7 107 9-115 5-115 (115)
2 COG0051 RpsJ Ribosomal protein 100.0 2.9E-40 6.2E-45 229.3 9.5 98 18-116 1-103 (104)
3 PRK12271 rps10p 30S ribosomal 100.0 6E-40 1.3E-44 227.6 10.7 96 21-116 2-101 (102)
4 TIGR01046 S10_Arc_S20_Euk ribo 100.0 9.9E-40 2.1E-44 225.4 10.2 95 21-115 1-99 (99)
5 PRK00596 rpsJ 30S ribosomal pr 100.0 3.5E-39 7.6E-44 223.5 8.6 97 18-115 1-102 (102)
6 CHL00135 rps10 ribosomal prote 100.0 1.4E-38 3E-43 220.4 8.6 94 17-111 3-101 (101)
7 TIGR01049 rpsJ_bact ribosomal 100.0 3E-38 6.4E-43 217.6 8.6 93 21-114 1-98 (99)
8 PF00338 Ribosomal_S10: Riboso 100.0 1.6E-33 3.4E-38 191.6 10.3 92 23-115 1-97 (97)
9 KOG3321 Mitochondrial ribosoma 99.9 1.8E-26 4E-31 170.6 -3.9 98 17-115 43-148 (175)
10 KOG0900 40S ribosomal protein 99.9 1.2E-24 2.6E-29 154.1 1.3 103 15-117 14-120 (121)
11 KOG4060 Uncharacterized conser 98.6 2.1E-07 4.5E-12 69.0 7.4 97 15-114 47-151 (176)
12 PF09586 YfhO: Bacterial membr 36.2 1E+02 0.0022 27.6 5.9 84 24-115 741-829 (843)
13 COG2061 ACT-domain-containing 32.2 1.2E+02 0.0025 23.0 4.7 37 21-57 130-166 (170)
14 TIGR03653 arch_L6P archaeal ri 31.4 70 0.0015 23.8 3.5 29 24-52 129-157 (170)
15 PTZ00027 60S ribosomal protein 31.4 63 0.0014 24.5 3.3 29 24-52 142-170 (190)
16 PF02399 Herpes_ori_bp: Origin 30.9 28 0.00061 32.3 1.5 25 54-78 35-63 (824)
17 PF00408 PGM_PMM_IV: Phosphogl 29.1 1.4E+02 0.003 18.4 4.1 27 21-47 47-73 (73)
18 PHA00490 terminal protein 28.7 32 0.00069 27.3 1.2 38 24-61 6-47 (266)
19 PRK05518 rpl6p 50S ribosomal p 26.8 90 0.002 23.5 3.4 30 23-52 134-163 (180)
20 COG4784 Putative Zn-dependent 25.1 1.4E+02 0.0029 25.7 4.4 39 30-75 61-99 (479)
21 KOG3257 Mitochondrial/chloropl 23.1 46 0.00099 25.1 1.2 31 32-62 134-164 (168)
22 PF00586 AIRS: AIR synthase re 22.1 2.2E+02 0.0049 18.1 4.3 36 20-55 57-93 (96)
23 KOG4435 Predicted lipid kinase 21.7 1.9E+02 0.004 25.4 4.6 37 45-84 45-81 (535)
24 PTZ00179 60S ribosomal protein 20.2 1.5E+02 0.0032 22.5 3.4 31 22-52 139-169 (189)
No 1
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=100.00 E-value=3.9e-41 Score=237.79 Aligned_cols=107 Identities=72% Similarity=1.156 Sum_probs=99.2
Q ss_pred CCCCccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEE
Q 033482 9 TKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVH 88 (118)
Q Consensus 9 ~~~~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~h 88 (118)
+|-+.++..+++++++|+|+|||+..||.+|++|.+.|++.|+.++||+||||++.+||+||||||+||+||||||+|+|
T Consensus 5 ~~~~~~~~~~~~~kirI~L~S~d~~~Ld~~~~~Ii~~ak~~g~~v~GPipLPtK~~~~tvlrSPhg~~kksreqfE~RiH 84 (115)
T PTZ00039 5 KKGGEEEEQNRLHKIRITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTLRITTRKSPCGEGTNTWDRFEMRIY 84 (115)
T ss_pred ccccchhhhheeeEEEEEEEECCHHHHHHHHHHHHHHHHHcCCEeECCccCCceeEEEEeeeCCCCCCCchHHHheeeee
Confidence 33355566678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCC----ceeeecCCCcEEEEEE
Q 033482 89 KRVIDLFSSPD----ITSITIEPGVEVEVTI 115 (118)
Q Consensus 89 kR~i~I~~~~~----l~~~~lP~gV~iev~l 115 (118)
||+|+|.++++ |+++++|+||+|||.+
T Consensus 85 KRlIdI~~~~~~v~~l~~~~lp~GV~Iei~~ 115 (115)
T PTZ00039 85 KRVIDLYSSSDVVTQITSINIDPGVEVEVII 115 (115)
T ss_pred eEEEEEeCCHHHHHHHhCCCCCCCcEEEEeC
Confidence 99999998755 8999999999999974
No 2
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-40 Score=229.30 Aligned_cols=98 Identities=37% Similarity=0.663 Sum_probs=93.5
Q ss_pred cceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCC
Q 033482 18 EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS 97 (118)
Q Consensus 18 ~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~ 97 (118)
|..++++|+|+|||+..||.+|.+|+++|+.+|+.++||+||||++.+||+|||||||| +||||||||+|||+|+|.+.
T Consensus 1 m~~~kirI~L~s~d~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~k-~s~e~fEmr~HkRlidi~~~ 79 (104)
T COG0051 1 MKKQKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEK-DSREQFEMRTHKRLIDIVDP 79 (104)
T ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCCC-chHHHhhhheeeeEEEeecC
Confidence 35679999999999999999999999999999999999999999999999999999995 69999999999999999988
Q ss_pred CC-----ceeeecCCCcEEEEEEe
Q 033482 98 PD-----ITSITIEPGVEVEVTIA 116 (118)
Q Consensus 98 ~~-----l~~~~lP~gV~iev~l~ 116 (118)
++ ||++++|+||+||+++.
T Consensus 80 ~~~~~~~Lm~i~~p~gV~vei~~~ 103 (104)
T COG0051 80 TPKTVDALMRLDLPAGVDVEIKLE 103 (104)
T ss_pred CHHHHHHHhcccCCCCceEEEEEc
Confidence 77 99999999999999975
No 3
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=100.00 E-value=6e-40 Score=227.59 Aligned_cols=96 Identities=41% Similarity=0.739 Sum_probs=91.8
Q ss_pred eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC-
Q 033482 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD- 99 (118)
Q Consensus 21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~- 99 (118)
++++|+|+|||+..||.+|++|.+.++..|+.++||+||||++.+||+||||||+||+||||||+|+|||+|+|.++++
T Consensus 2 ~~irI~L~S~d~~~Ld~~~~~I~~~~k~~g~~~~GPipLPtk~~~~tv~rSPh~~gk~sreqfE~r~hKRlidi~~~~~~ 81 (102)
T PRK12271 2 QKARIRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATWDHWEMRIHKRLIDIDADERA 81 (102)
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEECCCcCCceeEEEEeeeCCCCCCCcchHHeEEEEeEEEEEeeCCHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999966555
Q ss_pred ---ceeeecCCCcEEEEEEe
Q 033482 100 ---ITSITIEPGVEVEVTIA 116 (118)
Q Consensus 100 ---l~~~~lP~gV~iev~l~ 116 (118)
|+++++|+||+|+|++.
T Consensus 82 ~~~l~~~~lp~gV~iei~~~ 101 (102)
T PRK12271 82 LRQLMRIRVPEDVQIEIELI 101 (102)
T ss_pred HHHHhCCCCCCCcEEEEEEc
Confidence 89999999999999975
No 4
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=100.00 E-value=9.9e-40 Score=225.39 Aligned_cols=95 Identities=51% Similarity=0.882 Sum_probs=91.1
Q ss_pred eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC-
Q 033482 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD- 99 (118)
Q Consensus 21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~- 99 (118)
++++|+|+|||+..||.+|++|.+.|++.|+.++||+||||++.+||++|||||+|++||||||+|+|||+|+|.++++
T Consensus 1 ~~irI~L~S~d~~~Ld~~~~~I~~~ak~~g~~~~GPipLPtk~~~~tv~rsPh~~~~ks~e~fE~r~hKRlidi~~~~~~ 80 (99)
T TIGR01046 1 HKARIKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGSKTWDRWEMRIHKRLIDIEADERA 80 (99)
T ss_pred CcEEEEEEECCHHHHHHHHHHHHHHHHHcCCEEECCccCCcceEEEEeeeCCCCCCCcchHheEEEEEEEEEEEECCHHH
Confidence 3699999999999999999999999999999999999999999999999999999889999999999999999998865
Q ss_pred ---ceeeecCCCcEEEEEE
Q 033482 100 ---ITSITIEPGVEVEVTI 115 (118)
Q Consensus 100 ---l~~~~lP~gV~iev~l 115 (118)
|+++++|+||+||+++
T Consensus 81 ~~~l~~~~lp~gV~vei~~ 99 (99)
T TIGR01046 81 LRQIMRISVPEDVEIEITL 99 (99)
T ss_pred HHHHhCCCCCCCcEEEEEC
Confidence 8999999999999975
No 5
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=100.00 E-value=3.5e-39 Score=223.45 Aligned_cols=97 Identities=31% Similarity=0.561 Sum_probs=92.7
Q ss_pred cceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCC
Q 033482 18 EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS 97 (118)
Q Consensus 18 ~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~ 97 (118)
+.+++++|+|+|||+..||++|.+|.++|+.+|+.++||+||||++++||+||||||| |+||||||+|+|+|+|+|++.
T Consensus 1 ~~~~~irI~l~S~d~~~L~~~~~~i~~~a~~~~i~v~GpipLPtk~~r~tvlrSPhv~-KksreqfE~r~hkR~i~i~~~ 79 (102)
T PRK00596 1 MAKQKIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVN-KDSREQFEIRTHKRLIDIVDP 79 (102)
T ss_pred CCCcEEEEEEEECCHHHHHHHHHHHHHHHHHcCCeEECCcCCCcEEEEEEEeeCCCCC-CCHHHHhhhhhheEEEEEECC
Confidence 3567999999999999999999999999999999999999999999999999999999 899999999999999999988
Q ss_pred CC-----ceeeecCCCcEEEEEE
Q 033482 98 PD-----ITSITIEPGVEVEVTI 115 (118)
Q Consensus 98 ~~-----l~~~~lP~gV~iev~l 115 (118)
++ |+++++|+||+|+|++
T Consensus 80 ~~~~~~~l~~~~lp~gV~iev~~ 102 (102)
T PRK00596 80 TPKTVDALMKLDLPAGVDVEIKL 102 (102)
T ss_pred CHHHHHHHhcCCCCCCcEEEEEC
Confidence 85 8899999999999974
No 6
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=100.00 E-value=1.4e-38 Score=220.38 Aligned_cols=94 Identities=30% Similarity=0.541 Sum_probs=90.0
Q ss_pred ccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeC
Q 033482 17 QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFS 96 (118)
Q Consensus 17 ~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~ 96 (118)
.|..++++|+|+|||+..||++|++|.++|+.+|+.++||+||||++++|||||||||| ||||||||+|+|||+|+|.+
T Consensus 3 ~~~~~kirI~LkS~d~~~L~~~~~~I~~~~k~~~~~~~GpipLPtk~~~~TvlrSPhv~-KkSrEqfE~r~hKRlI~i~~ 81 (101)
T CHL00135 3 IMTNAKIRIKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVD-KDSREHFEIRTHKRIIDIYY 81 (101)
T ss_pred CCccCeEEEEEEECCHHHHHHHHHHHHHHHHHcCCeEeCCcCCCcEEEEEEEecCCCCC-CchHHhhhheeeeEEEEEeC
Confidence 46678999999999999999999999999999999999999999999999999999999 89999999999999999998
Q ss_pred CCC-----ceeeecCCCcEE
Q 033482 97 SPD-----ITSITIEPGVEV 111 (118)
Q Consensus 97 ~~~-----l~~~~lP~gV~i 111 (118)
.++ |+++++|+||+|
T Consensus 82 ~~~~~i~~l~~~~lp~gV~i 101 (101)
T CHL00135 82 PSSETIDSLMKLDLPPGVDI 101 (101)
T ss_pred CCHHHHHHHHcCCCCCCCcC
Confidence 885 899999999985
No 7
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=100.00 E-value=3e-38 Score=217.61 Aligned_cols=93 Identities=33% Similarity=0.591 Sum_probs=89.8
Q ss_pred eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC-
Q 033482 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD- 99 (118)
Q Consensus 21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~- 99 (118)
++++|+|+|||+..||.+|++|.++|+.+|+.++||+||||++.+||+||||||| ||||||||+|+|+|+|+|++.++
T Consensus 1 ~~irI~l~s~d~~~L~~~~~~i~~~a~~~gi~~~gpi~LPtk~~~~tvlrSPhv~-kksreqfE~r~hkR~i~i~~~~~~ 79 (99)
T TIGR01049 1 QKIRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVN-KDSREQFEIRTHKRLIDIIDPNPK 79 (99)
T ss_pred CeEEEEEEECCHHHHHHHHHHHHHHHHHcCCceecccCCCCEEEEEEEeeCCCCC-CCHHHHhhhhhheEEEEEeCCCHH
Confidence 4799999999999999999999999999999999999999999999999999999 79999999999999999998886
Q ss_pred ----ceeeecCCCcEEEEE
Q 033482 100 ----ITSITIEPGVEVEVT 114 (118)
Q Consensus 100 ----l~~~~lP~gV~iev~ 114 (118)
++++++|+||+|+|+
T Consensus 80 ~~~~l~~~~lp~gV~iei~ 98 (99)
T TIGR01049 80 TIDALMKLDLPAGVDIEIK 98 (99)
T ss_pred HHHHHHcCCCCCCcEEEEE
Confidence 889999999999986
No 8
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....
Probab=100.00 E-value=1.6e-33 Score=191.55 Aligned_cols=92 Identities=34% Similarity=0.532 Sum_probs=87.3
Q ss_pred EEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC---
Q 033482 23 IRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD--- 99 (118)
Q Consensus 23 i~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~--- 99 (118)
++|+|+|||+..||.+|.+|.++|+.+|+.++||++|||++.+||+||||||| |+||||||+++|+|.|+|.+.+.
T Consensus 1 i~I~l~s~d~~~l~~~~~~i~~~~~~~~~~~~~~~~lPtk~~~~tvlrSPhv~-kks~eqfe~~~~kr~i~i~~~~~~~~ 79 (97)
T PF00338_consen 1 IRIKLKSYDKKLLESYVKFIHKLAKNLGIKVSGPIPLPTKKKRFTVLRSPHVD-KKSREQFEIRTHKRLIQIKNLNSELA 79 (97)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHCTSSCEEEEEEEEEEEEEEEEESSSSSS-TTSEEEEEEEEEEEEEEESSSSHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCccEEEEEEeecCcCC-cchhhheeeeeeEEEEEEeCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999976665
Q ss_pred --ceeeecCCCcEEEEEE
Q 033482 100 --ITSITIEPGVEVEVTI 115 (118)
Q Consensus 100 --l~~~~lP~gV~iev~l 115 (118)
++.+++|+||+|+|++
T Consensus 80 ~~~l~~~~p~gV~i~i~i 97 (97)
T PF00338_consen 80 DKLLYIQLPEGVQIEIKI 97 (97)
T ss_dssp HHHHHSSTSSSSEEEEEE
T ss_pred HHHhCcCCCCCCEEEEEC
Confidence 5578889999999986
No 9
>KOG3321 consensus Mitochondrial ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.8e-26 Score=170.65 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=92.3
Q ss_pred ccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeC
Q 033482 17 QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFS 96 (118)
Q Consensus 17 ~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~ 96 (118)
...+..+.|.++|+|..+||+|..||+++|+.+||.++||-|||+++++||+|||||++ |||++|||+|||.|+|++++
T Consensus 43 dkly~~~ai~lrg~D~avLdsYt~Fi~~ta~~LgIp~~~~~plp~~~Er~TlLrS~fIh-KK~k~~yE~rTH~R~i~l~~ 121 (175)
T KOG3321|consen 43 DKLYSLVAIELRGHDKAVLDSYTDFICRTAYYLGIPIKGPEPLPKKRERWTLLRSPFIH-KKSKENYERRTHSRLIELYS 121 (175)
T ss_pred hhhcceeeEEeccCchHHHHHHHHHHHHHHHHhCCccCCCCCCchhhhhhhhhhchhhh-hHHhhhHHHHHHHHHHHHhh
Confidence 34456788999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCC--------ceeeecCCCcEEEEEE
Q 033482 97 SPD--------ITSITIEPGVEVEVTI 115 (118)
Q Consensus 97 ~~~--------l~~~~lP~gV~iev~l 115 (118)
.++ +++.++|+||.|+++.
T Consensus 122 ~tgsTl~tfleYI~rn~pegV~mq~~~ 148 (175)
T KOG3321|consen 122 VTGSTLDTFLEYIQRNLPEGVGMQAKF 148 (175)
T ss_pred cCchHHHHHHHHHHhhChhhhcceece
Confidence 887 6889999999999875
No 10
>KOG0900 consensus 40S ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.2e-24 Score=154.11 Aligned_cols=103 Identities=75% Similarity=1.194 Sum_probs=96.8
Q ss_pred ccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEe
Q 033482 15 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL 94 (118)
Q Consensus 15 ~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I 94 (118)
...++..+++|++.|.+...|+++|..|.+.|++.+++++||++|||+.+++|++|+||+.|++.|++|+||+|+|+|++
T Consensus 14 ~~~~~~~~~~it~~~~~~kslekvC~dl~~~ak~~nl~~kg~vr~Ptk~~~itt~k~p~g~g~k~w~~f~mRiH~R~idl 93 (121)
T KOG0900|consen 14 LSTPEIHKIRITLTSQKVKSLEKVCADLVRGAKEKNLKVKGPVRLPTKVLKITTRKTPCGEGSKTWDRFEMRVHKRLIDL 93 (121)
T ss_pred cchhhhhccceeeeHHHHHHHHHHHHHHHHHHhhcCCcccCcccCCceeEEEEEeecCCcCCccHHHHHHHHHHHHHhcc
Confidence 45666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC----ceeeecCCCcEEEEEEec
Q 033482 95 FSSPD----ITSITIEPGVEVEVTIAD 117 (118)
Q Consensus 95 ~~~~~----l~~~~lP~gV~iev~l~~ 117 (118)
..++. ++++.++|||++++.+.+
T Consensus 94 ~s~se~vkqitsi~~epgVevev~i~~ 120 (121)
T KOG0900|consen 94 HSPSEIVKQITSISIEPGVEVEVTIAN 120 (121)
T ss_pred CChHHHHHHhhhhccCCCceEEEEecc
Confidence 88887 778888999999999875
No 11
>KOG4060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.1e-07 Score=69.00 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=86.1
Q ss_pred ccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEe
Q 033482 15 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL 94 (118)
Q Consensus 15 ~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I 94 (118)
-...++..+.+++++||.-.|++|..++-.+|+.+++.+.--..+|+++..+-.|| | +|+.+-..+.+.||-|.+.+
T Consensus 47 re~~ey~~lNV~i~gyD~~~lEsYq~yvH~la~~l~~~V~dsYA~p~qt~~v~~l~-p--~stv~ese~~ltTyeRvvql 123 (176)
T KOG4060|consen 47 REINEYGVLNVHITGYDMTLLESYQQYVHNLANSLSIKVEDSYAMPTQTIEVLQLQ-P--QSTVMESESVLTTYERVVQL 123 (176)
T ss_pred hcccccceEEEEEEecccchHHHHHHHHHHHHHHcCceeEeeeccCccceeEEEec-C--Cceeeehhhhhhhhhheeee
Confidence 34457778999999999999999999999999999999999999999998877776 3 34677789999999999999
Q ss_pred eCCCC--------ceeeecCCCcEEEEE
Q 033482 95 FSSPD--------ITSITIEPGVEVEVT 114 (118)
Q Consensus 95 ~~~~~--------l~~~~lP~gV~iev~ 114 (118)
.+.+. |++-.+|+||.+.|+
T Consensus 124 s~v~Ap~~~~Fl~iiqa~lPeGV~l~Vk 151 (176)
T KOG4060|consen 124 SGVSAPFAEIFLEIIQASLPEGVRLSVK 151 (176)
T ss_pred cccCchhHHHHHHHHHHhCCcceEEEee
Confidence 98887 778899999999886
No 12
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=36.17 E-value=1e+02 Score=27.58 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=63.1
Q ss_pred EEEEeecCchhHHHHHHHHHH----HHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC
Q 033482 24 RITLSSKNVKNLEKVCTDLVR----GAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD 99 (118)
Q Consensus 24 ~I~LkS~d~~~L~~~~~~i~~----~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~ 99 (118)
.+.+-+.|...+++.++.+.+ ..+..+-.++|-+..+ ++..+-++-=|.-.| |...+=-+-.++...+.
T Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~l~~sipy~~G------W~~~vdGk~~~~~~~~~ 813 (843)
T PF09586_consen 741 NIQLYTLDYDALEKAVNQLKKNGLKNTKYSNNHISGTITAT-SKDGYLVLSIPYDKG------WKAYVDGKKVEIEKVNG 813 (843)
T ss_pred CCEEEEcCHHHHHHHHHhhhhcCcEEEEEeCCEEEEEEEec-CCCcEEEEEeccCCC------CEEEECCEEccHhhhcC
Confidence 356778888888888888887 2233566788988887 666666777788777 78888778888777666
Q ss_pred -ceeeecCCCcEEEEEE
Q 033482 100 -ITSITIEPGVEVEVTI 115 (118)
Q Consensus 100 -l~~~~lP~gV~iev~l 115 (118)
++-..+|+|-+ +|++
T Consensus 814 ~f~g~~l~~G~h-~i~~ 829 (843)
T PF09586_consen 814 GFMGVPLPKGEH-QIEL 829 (843)
T ss_pred eEEEEEEcCCce-EEEE
Confidence 88899999876 4544
No 13
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=32.22 E-value=1.2e+02 Score=22.98 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=32.4
Q ss_pred eEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeee
Q 033482 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPV 57 (118)
Q Consensus 21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi 57 (118)
..+.|++..-++..|+.++..|.+.|.+.++-+..|+
T Consensus 130 SsA~iti~a~~~e~l~ea~~~l~ev~~eK~Ll~I~pV 166 (170)
T COG2061 130 SSARITIIAVGKEKLDEALRRLKEVAMEKDLLLISPV 166 (170)
T ss_pred cceeEEEEEcChhHHHHHHHHHHHHHhhcCcEEEEee
Confidence 3577899889999999999999999999998777665
No 14
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=31.41 E-value=70 Score=23.81 Aligned_cols=29 Identities=3% Similarity=0.189 Sum_probs=25.6
Q ss_pred EEEEeecCchhHHHHHHHHHHHHhhcCCe
Q 033482 24 RITLSSKNVKNLEKVCTDLVRGAKDKRLR 52 (118)
Q Consensus 24 ~I~LkS~d~~~L~~~~~~i~~~~~~~~i~ 52 (118)
+|.++|.|+..+-.+|..|.++|+-.+-+
T Consensus 129 ~I~i~G~DKq~Vgq~AA~Ir~~~~~~~~d 157 (170)
T TIGR03653 129 EVIVTGIDKEDVGQTAANIEQATRIKGRD 157 (170)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhhcccCCC
Confidence 69999999999999999999998765543
No 15
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=31.37 E-value=63 Score=24.52 Aligned_cols=29 Identities=3% Similarity=0.106 Sum_probs=25.6
Q ss_pred EEEEeecCchhHHHHHHHHHHHHhhcCCe
Q 033482 24 RITLSSKNVKNLEKVCTDLVRGAKDKRLR 52 (118)
Q Consensus 24 ~I~LkS~d~~~L~~~~~~i~~~~~~~~i~ 52 (118)
.|.++|.|...+-.+|..|.++|+-.+-+
T Consensus 142 ~I~i~G~DKq~Vgq~AA~I~~~~~~~~~d 170 (190)
T PTZ00027 142 EIIVTGADLELVSRSAALIHQSTLVRNKD 170 (190)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhcccCCC
Confidence 69999999999999999999998765543
No 16
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=30.86 E-value=28 Score=32.28 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=20.7
Q ss_pred eeeecCCc----eeEEEEEecCCCCCCCC
Q 033482 54 KGPVRMPT----KVLHITTRKSPCGEGTN 78 (118)
Q Consensus 54 ~Gpi~LPt----k~~~~TvlRSPhv~gKk 78 (118)
.+||.+|. ....++++|||.|-||-
T Consensus 35 ~~pV~~p~p~~~~~~~V~vVRSpMGTGKT 63 (824)
T PF02399_consen 35 DGPVSFPSPFSPQKRGVLVVRSPMGTGKT 63 (824)
T ss_pred CCceecCCCCcCCCCCeEEEECCCCCCcH
Confidence 57887765 68899999999999954
No 17
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=29.12 E-value=1.4e+02 Score=18.45 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.5
Q ss_pred eEEEEEEeecCchhHHHHHHHHHHHHh
Q 033482 21 HKIRITLSSKNVKNLEKVCTDLVRGAK 47 (118)
Q Consensus 21 ~ki~I~LkS~d~~~L~~~~~~i~~~~~ 47 (118)
..+||.+.|.+...++..+..+....+
T Consensus 47 P~iRv~~Ea~~~~~~~~~~~~i~~~ik 73 (73)
T PF00408_consen 47 PKIRVYVEAPDEEELEEIAEEIAEAIK 73 (73)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 469999999999999999999887653
No 18
>PHA00490 terminal protein
Probab=28.69 E-value=32 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=28.4
Q ss_pred EEEEeecCchhHH----HHHHHHHHHHhhcCCeeeeeecCCc
Q 033482 24 RITLSSKNVKNLE----KVCTDLVRGAKDKRLRVKGPVRMPT 61 (118)
Q Consensus 24 ~I~LkS~d~~~L~----~~~~~i~~~~~~~~i~~~Gpi~LPt 61 (118)
+|+|+-.|....- +.-.+|.+.-++.|+.+.|.|.+|.
T Consensus 6 riRit~ndkaeyakLvkntKAKitRtkKkYG~Dlt~eI~~p~ 47 (266)
T PHA00490 6 RIRITKNDKAEYAKLVKNTKAKITRTKKKYGQDLTGEISPPS 47 (266)
T ss_pred ceeeccccHHHHHHHHHhhHHHHHHHHHHhccccccccCCCC
Confidence 5666666665444 4445777888999999999999885
No 19
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=26.82 E-value=90 Score=23.51 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=26.2
Q ss_pred EEEEEeecCchhHHHHHHHHHHHHhhcCCe
Q 033482 23 IRITLSSKNVKNLEKVCTDLVRGAKDKRLR 52 (118)
Q Consensus 23 i~I~LkS~d~~~L~~~~~~i~~~~~~~~i~ 52 (118)
.+|.++|.|+..+-.+|..|.+.|+-.+-+
T Consensus 134 t~I~i~GiDKq~Vgq~AA~Ir~~~~~~~kd 163 (180)
T PRK05518 134 EDVIVEGIDKEDVGQTAANIEQATKIKGFD 163 (180)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhhcccCCC
Confidence 469999999999999999999998765544
No 20
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=25.08 E-value=1.4e+02 Score=25.71 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=29.3
Q ss_pred cCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCC
Q 033482 30 KNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGE 75 (118)
Q Consensus 30 ~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~ 75 (118)
|+-..|+.++..|....-.. ---|+..-++|+|-||.+|
T Consensus 61 Y~D~Kler~Vari~g~lt~~-------S~~p~q~YriTilnSP~IN 99 (479)
T COG4784 61 YRDPKLERMVARIVGALTAV-------SENPQQTYRITILNSPNIN 99 (479)
T ss_pred cCCHHHHHHHHHHHhHhhhh-------ccCCCceEEEEEecCCCcc
Confidence 45677888888887743221 1358889999999999998
No 21
>KOG3257 consensus Mitochondrial/chloroplast ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=23.07 E-value=46 Score=25.11 Aligned_cols=31 Identities=26% Similarity=0.572 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHhhcCCeeeeeecCCce
Q 033482 32 VKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 62 (118)
Q Consensus 32 ~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk 62 (118)
.--|++.|.-|.-.|++.||++.-|+--|.+
T Consensus 134 ~~~lesi~rsiigtA~smGIkVvp~ile~q~ 164 (168)
T KOG3257|consen 134 CTTLESICRSIIGTARSMGIKVVPPILEPQK 164 (168)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhchhh
Confidence 3478999999999999999998776544443
No 22
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=22.06 E-value=2.2e+02 Score=18.14 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=27.1
Q ss_pred eeEEEEEEee-cCchhHHHHHHHHHHHHhhcCCeeee
Q 033482 20 IHKIRITLSS-KNVKNLEKVCTDLVRGAKDKRLRVKG 55 (118)
Q Consensus 20 ~~ki~I~LkS-~d~~~L~~~~~~i~~~~~~~~i~~~G 55 (118)
.-...+.+.. .+...|+..++-|.+.|+..|+.+.|
T Consensus 57 ~~~~~l~~~~~~~~~~l~~~~~Gi~~~~~~~g~~ivG 93 (96)
T PF00586_consen 57 AILDSLGLPNPESPEELKEIVKGIAEACREFGIPIVG 93 (96)
T ss_dssp EEEEEEEESTTSBHHHHHHHHHHHHHHHHHHT-EEEE
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCcEeC
Confidence 3445566644 46778999999999999999998765
No 23
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=21.71 E-value=1.9e+02 Score=25.37 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeE
Q 033482 45 GAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE 84 (118)
Q Consensus 45 ~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE 84 (118)
.|...|... +|--|+-++++|+--|-+|.-+-|+||+
T Consensus 45 ~aq~~g~t~---vpp~~~~Kkv~V~~Np~ank~~~r~~f~ 81 (535)
T KOG4435|consen 45 IAQKYGETT---VPPETRPKKVFVLVNPEANKRGCRDQFN 81 (535)
T ss_pred HHHHhcccc---CCcccccceEEEEechhhccchhhhhhh
Confidence 334444443 3345677999999999999546999998
No 24
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=20.18 E-value=1.5e+02 Score=22.51 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=26.6
Q ss_pred EEEEEEeecCchhHHHHHHHHHHHHhhcCCe
Q 033482 22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLR 52 (118)
Q Consensus 22 ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~ 52 (118)
+-.|.|+|.|...+-.+|..|.++|+-.+-+
T Consensus 139 k~~i~i~G~DKq~Vgq~AA~i~~~~~~~~~d 169 (189)
T PTZ00179 139 KDELVLEGNDLEQVSREAAVMHQLCLVKKKD 169 (189)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhhcccCCC
Confidence 3479999999999999999999998765544
Done!