Query 033482
Match_columns 118
No_of_seqs 109 out of 679
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_J 40S ribosomal protein S 100.0 4.1E-44 1.4E-48 256.0 5.6 110 8-117 14-127 (128)
2 3u5c_U 40S ribosomal protein S 100.0 1.7E-42 5.7E-47 245.7 9.1 103 15-117 14-120 (121)
3 3j20_L 30S ribosomal protein S 100.0 9.1E-42 3.1E-46 235.5 9.0 97 20-116 1-101 (102)
4 2xzm_J Ribosomal protein S10 c 100.0 1.8E-40 6.2E-45 234.9 12.6 106 12-117 8-118 (120)
5 2zkq_j 40S ribosomal protein S 100.0 2.2E-41 7.7E-46 239.2 5.6 107 11-117 8-118 (119)
6 3r8n_J 30S ribosomal protein S 100.0 1.6E-39 5.6E-44 222.5 4.7 93 22-115 1-98 (98)
7 2vqe_J 30S ribosomal protein S 100.0 1.8E-38 6E-43 219.6 1.7 96 20-116 1-101 (105)
8 3bbn_J Ribosomal protein S10; 100.0 7.6E-37 2.6E-41 231.3 7.9 102 13-115 90-197 (197)
9 3d3c_J 30S ribosomal protein S 99.9 1.4E-25 4.9E-30 150.7 7.1 78 16-115 4-86 (87)
10 3r2c_J Protein NUSE, 30S ribos 99.9 2E-24 6.7E-29 144.1 6.1 76 18-115 1-81 (83)
11 2ln3_A De novo designed protei 55.8 35 0.0012 21.3 5.7 36 22-57 28-63 (83)
12 3bbo_K Ribosomal protein L11; 44.7 11 0.00039 28.5 2.2 37 28-64 185-221 (224)
13 2kl8_A OR15; structural genomi 32.7 91 0.0031 19.4 5.1 37 23-59 42-78 (85)
14 4a17_E RPL9, 60S ribosomal pro 26.1 34 0.0012 24.9 2.1 40 12-51 129-168 (188)
15 1hc8_A Ribosomal protein L11; 24.7 42 0.0015 20.9 2.1 29 27-55 48-76 (76)
16 3iz5_F 60S ribosomal protein L 23.7 41 0.0014 24.5 2.1 40 12-51 130-169 (190)
17 2zkr_e 60S ribosomal protein L 21.6 50 0.0017 24.0 2.3 30 23-52 142-171 (192)
18 2gjh_A Designed protein; oblig 21.1 1.4E+02 0.0047 17.6 4.3 32 20-51 1-32 (62)
19 3u5e_H L8, RP24, YL11, 60S rib 20.9 38 0.0013 24.7 1.5 39 12-50 131-169 (191)
No 1
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-44 Score=256.03 Aligned_cols=110 Identities=84% Similarity=1.223 Sum_probs=103.4
Q ss_pred CCCCCccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEE
Q 033482 8 PTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRV 87 (118)
Q Consensus 8 ~~~~~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~ 87 (118)
..+.|.+..+.+.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||||||||||||+|+
T Consensus 14 ~~~~~~~~~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPTk~~r~TvlRSPhv~gKkSrEqFE~Rt 93 (128)
T 3iz6_J 14 SGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRV 93 (128)
T ss_dssp CSSSCCBCCSSSBCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCCCEEEEEEEEEEECCCCCSSCCSSCCEEEEE
T ss_pred ccccccccccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceecccCCCCceEEEEEEecCCCCCCcchhheEEEE
Confidence 33357777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCC----ceeeecCCCcEEEEEEec
Q 033482 88 HKRVIDLFSSPD----ITSITIEPGVEVEVTIAD 117 (118)
Q Consensus 88 hkR~i~I~~~~~----l~~~~lP~gV~iev~l~~ 117 (118)
|||+|+|.++++ |+++++|+||+|||++++
T Consensus 94 HKRlIdI~~~~~~v~~l~~l~lP~GV~veI~i~~ 127 (128)
T 3iz6_J 94 HKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127 (128)
T ss_dssp EEEEEECCSSCCHHHHHHHHHSCCCSSCEEECCC
T ss_pred EEEEEEEeCcHHHHHHHhCCcCCCCCEEEEEEec
Confidence 999999998866 899999999999999876
No 2
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=100.00 E-value=1.7e-42 Score=245.67 Aligned_cols=103 Identities=57% Similarity=0.923 Sum_probs=97.4
Q ss_pred ccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEe
Q 033482 15 EAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL 94 (118)
Q Consensus 15 ~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I 94 (118)
..+.+.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||||||||||||+|+|+|+|+|
T Consensus 14 ~~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI 93 (121)
T 3u5c_U 14 QQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDL 93 (121)
T ss_dssp -CCCCCCCEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEE
T ss_pred cccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEe
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC----ceeeecCCCcEEEEEEec
Q 033482 95 FSSPD----ITSITIEPGVEVEVTIAD 117 (118)
Q Consensus 95 ~~~~~----l~~~~lP~gV~iev~l~~ 117 (118)
.+++. |+++++|+||+|+|++++
T Consensus 94 ~~~~~~v~~l~~~~lp~GV~vei~i~~ 120 (121)
T 3u5c_U 94 EAPVQIVKRITQITIEPGVDVEVVVAS 120 (121)
T ss_dssp CCCHHHHHHHHHSSCCTTCEEEECCSC
T ss_pred cCCHHHHHHHHcCcCCCCCEEEEEEcC
Confidence 97654 899999999999999875
No 3
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.1e-42 Score=235.54 Aligned_cols=97 Identities=42% Similarity=0.730 Sum_probs=92.1
Q ss_pred eeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC
Q 033482 20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD 99 (118)
Q Consensus 20 ~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~ 99 (118)
|++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||||||||||||+|+|+|+|+|..+++
T Consensus 1 ~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi~~~~~ 80 (102)
T 3j20_L 1 MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADER 80 (102)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEEEECHH
T ss_pred CcEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEEeCCHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999954433
Q ss_pred ----ceeeecCCCcEEEEEEe
Q 033482 100 ----ITSITIEPGVEVEVTIA 116 (118)
Q Consensus 100 ----l~~~~lP~gV~iev~l~ 116 (118)
++++++|+||+|||++.
T Consensus 81 ~v~~l~~~~lp~GV~vei~~~ 101 (102)
T 3j20_L 81 AMRQIMRIRVPEDVTIEIELI 101 (102)
T ss_dssp HHHHHTTSCCCSSCEEEEEEE
T ss_pred HHHHHhcCcCCCCcEEEEEEe
Confidence 89999999999999985
No 4
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Probab=100.00 E-value=1.8e-40 Score=234.87 Aligned_cols=106 Identities=52% Similarity=0.877 Sum_probs=95.2
Q ss_pred CccccccceeEEEEEEeecCchhHHHHHHHHHHHHhh-cCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEE
Q 033482 12 GLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKD-KRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKR 90 (118)
Q Consensus 12 ~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~-~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR 90 (118)
+.+..+++.++++|+|+|||+..||++|.+|.++|++ +|+.++||+||||++.+|||||||||.||+||||||+|+|+|
T Consensus 8 ~~~~~~~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~~g~~v~GPipLPtk~~~~TvlRSPhgv~kksreqFE~RthKR 87 (120)
T 2xzm_J 8 KKGEEEVKKVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTWDRFEMRIYKR 87 (120)
T ss_dssp ------CCCEEEEEEEEESCHHHHHHHHHHHHHHHHTSTTCEEEEEEECCCEEEEEEEECSSSSCSSCCEEEEEEEEEEE
T ss_pred CcccccccceEEEEEEEECCHHHHHHHHHHHHHHHHHhcCCeeecCcCCCceeEEEEEEeCCCCCCCcchHheEEEEEEE
Confidence 3445567778999999999999999999999999999 999999999999999999999999944599999999999999
Q ss_pred EEEeeCCCC----ceeeecCCCcEEEEEEec
Q 033482 91 VIDLFSSPD----ITSITIEPGVEVEVTIAD 117 (118)
Q Consensus 91 ~i~I~~~~~----l~~~~lP~gV~iev~l~~ 117 (118)
+|+|.+.++ |+++++|+||+|||++.+
T Consensus 88 lIdI~~~~~tv~~l~~l~lp~GV~ieI~i~~ 118 (120)
T 2xzm_J 88 IIDLTCNVPDVKTITNFRIDPGVEIELTMTA 118 (120)
T ss_dssp EEEEEECHHHHHHHSCSCCCSSEEEEEEEEC
T ss_pred EEEEeCCcHHHHHHHcCcCCCCCEEEEEEec
Confidence 999998877 889999999999999975
No 5
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.2e-41 Score=239.23 Aligned_cols=107 Identities=71% Similarity=1.149 Sum_probs=90.4
Q ss_pred CCccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEE
Q 033482 11 PGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKR 90 (118)
Q Consensus 11 ~~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR 90 (118)
.+.+..+++.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++.+|||||||||+|||||||||+|+|+|
T Consensus 8 ~~~~~~~~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhg~~KksreqFE~RthKR 87 (119)
T 2zkq_j 8 KTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKR 87 (119)
T ss_dssp -----------CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCC
T ss_pred cccccccccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccCCcCCCCeeEEEEEEcCCCCCCCcchHheEeEEEEE
Confidence 34445567889999999999999999999999999999999999999999999999999999987799999999999999
Q ss_pred EEEeeCCCC----ceeeecCCCcEEEEEEec
Q 033482 91 VIDLFSSPD----ITSITIEPGVEVEVTIAD 117 (118)
Q Consensus 91 ~i~I~~~~~----l~~~~lP~gV~iev~l~~ 117 (118)
+|+|.++++ |+++++|+||+|+|++.+
T Consensus 88 lIdI~~~~~~v~~l~~~~lp~GV~ieI~i~~ 118 (119)
T 2zkq_j 88 LIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118 (119)
T ss_dssp CCCBCSCTHHHHHHHHCCCCSSEEEEEC---
T ss_pred EEEEeChHHHHHHHHcCcCCCCCEEEEEEec
Confidence 999998765 889999999999999864
No 6
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=100.00 E-value=1.6e-39 Score=222.45 Aligned_cols=93 Identities=26% Similarity=0.567 Sum_probs=89.0
Q ss_pred EEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC--
Q 033482 22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD-- 99 (118)
Q Consensus 22 ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~-- 99 (118)
+++|+|+|||+..||++|.+|.++|+.+|+.++||+||||++.+||+||||||| ||||||||+|+|+|+|+|.+.++
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~v~Gpi~lPtk~~~~tvlrSPh~~-kksreqfE~rthkRlIdi~~~~~~~ 79 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVN-KDARDQYEIRTHLRLVDIVEPTEKT 79 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCCEEEEEECCSSSSC-TTCCEEEEEECBCCCCCBSCCCTTT
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeccccCCCCeEEEEEEecCCCCC-CchhHhEEEEEEEEEEEEeCCCHHH
Confidence 478999999999999999999999999999999999999999999999999999 68999999999999999998875
Q ss_pred ---ceeeecCCCcEEEEEE
Q 033482 100 ---ITSITIEPGVEVEVTI 115 (118)
Q Consensus 100 ---l~~~~lP~gV~iev~l 115 (118)
++++++|+||+|+|++
T Consensus 80 v~~l~~~~lp~GV~vev~~ 98 (98)
T 3r8n_J 80 VDALMRLDLAAGVDVQISL 98 (98)
T ss_dssp TTTTTTCCCCTTCEEECCC
T ss_pred HHHHHcCcCCCCcEEEEEC
Confidence 8999999999999864
No 7
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...
Probab=100.00 E-value=1.8e-38 Score=219.57 Aligned_cols=96 Identities=29% Similarity=0.588 Sum_probs=89.9
Q ss_pred eeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCCCC
Q 033482 20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD 99 (118)
Q Consensus 20 ~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~~~ 99 (118)
+++++|+|+|||+..||++|.+|.++|+.+|+.++||+||||++.+||||||||++ ||||||||+|+|+|+|+|.+.++
T Consensus 1 ~~kirI~Lks~d~~~Ld~~~~~i~~~ak~~g~~v~gpi~LPtk~~~~tvlrSPhv~-kksreqfE~r~hkR~I~i~~~~~ 79 (105)
T 2vqe_J 1 MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKH-KDSREHFELRTHNRLVDIINPNR 79 (105)
T ss_dssp --CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCCCCCCBCCEEECCSSSSSC-TTCCCEEECCBEEECCCBSSCCT
T ss_pred CcEEEEEEEEcCHHHHHHHHHHHHHHHHHhCCcccCccCCCCEEEEEEEEcCCCCC-CChHHhEEeEEEEEEEEEeCCCH
Confidence 36899999999999999999999999999999999999999999999999999998 89999999999999999987665
Q ss_pred -----ceeeecCCCcEEEEEEe
Q 033482 100 -----ITSITIEPGVEVEVTIA 116 (118)
Q Consensus 100 -----l~~~~lP~gV~iev~l~ 116 (118)
++++++|+||+|+|++.
T Consensus 80 ~~~~~l~~~~lp~GV~iei~~~ 101 (105)
T 2vqe_J 80 KTIEQLMTLDLPTGVEIEIKTV 101 (105)
T ss_dssp THHHHSSSCCCCSSCEEEECC-
T ss_pred HHHHHHHhCcCCCCCEEEEEEE
Confidence 88999999999999874
No 8
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.6e-37 Score=231.28 Aligned_cols=102 Identities=31% Similarity=0.506 Sum_probs=91.1
Q ss_pred cccccc-ceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEE
Q 033482 13 LEEAQE-QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRV 91 (118)
Q Consensus 13 ~~~~~~-~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~ 91 (118)
.|+..| +.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++++||+|||||+| ||||||||+|+|||+
T Consensus 90 ~e~~~m~~~~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~-KKSREQFEmRtHKRl 168 (197)
T 3bbn_J 90 ADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVH-KDARFHFEIRTHQRL 168 (197)
T ss_dssp ---------CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSC-CSSCCCEEEEEEEEE
T ss_pred CcccccccCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCC-CCcceeEEEEEEEEE
Confidence 343333 447999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred EEeeCCCC-----ceeeecCCCcEEEEEE
Q 033482 92 IDLFSSPD-----ITSITIEPGVEVEVTI 115 (118)
Q Consensus 92 i~I~~~~~-----l~~~~lP~gV~iev~l 115 (118)
|+|.+.++ ++++++|+||+|||++
T Consensus 169 IdI~~~t~~tvd~lm~l~LP~GV~IEIkl 197 (197)
T 3bbn_J 169 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 197 (197)
T ss_dssp EEESSCCHHHHHHHTTCCCCSSCEEEEEC
T ss_pred EEEECCCHHHHHHHHcCcCCCCCEEEEeC
Confidence 99998885 8999999999999975
No 9
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=99.92 E-value=1.4e-25 Score=150.69 Aligned_cols=78 Identities=26% Similarity=0.583 Sum_probs=73.1
Q ss_pred cccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEee
Q 033482 16 AQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLF 95 (118)
Q Consensus 16 ~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~ 95 (118)
.+|+.++++|+|+|||+..||++|.+|.++|+++|+.++||+||||++ |+|||+|+|+
T Consensus 4 ~~m~~~kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~----------------------R~HKRlIdi~ 61 (87)
T 3d3c_J 4 GSMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS----------------------RTHLRLVDIV 61 (87)
T ss_dssp CCCSSCEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET----------------------TEEEEEEEEE
T ss_pred ccccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCccCCCCCCCCCC----------------------ceEEEEEEEe
Confidence 346668999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCC-----ceeeecCCCcEEEEEE
Q 033482 96 SSPD-----ITSITIEPGVEVEVTI 115 (118)
Q Consensus 96 ~~~~-----l~~~~lP~gV~iev~l 115 (118)
++++ ++++++|+||+|||++
T Consensus 62 ~~~~~~v~~l~~l~lp~GV~ieI~i 86 (87)
T 3d3c_J 62 EPTEKTVDDLMRLDLAAGVDVQISL 86 (87)
T ss_dssp SCCHHHHHHHHHCCCCTTEEEEEEE
T ss_pred CCCHHHHHHHHcCCCCCCceEEEEE
Confidence 8765 8999999999999986
No 10
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=99.90 E-value=2e-24 Score=144.06 Aligned_cols=76 Identities=28% Similarity=0.501 Sum_probs=71.3
Q ss_pred cceeEEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeEEEEEecCCCCCCCCccceeEEEEEEEEEEeeCC
Q 033482 18 EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS 97 (118)
Q Consensus 18 ~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~~~TvlRSPhv~gKkSreqfE~r~hkR~i~I~~~ 97 (118)
|..++++|+|+|||+..||.+|.+|.+.|+++|+.++||+||||++.+| ||+|+|+++
T Consensus 1 ~~~~kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~~~~----------------------KRlIdi~~~ 58 (83)
T 3r2c_J 1 MEQEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEF----------------------SRILDIIRF 58 (83)
T ss_dssp --CCCEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEE----------------------EEEEEEEEC
T ss_pred CCCcEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCCcCCCCcceEE----------------------EEEEEEcCC
Confidence 3468999999999999999999999999999999999999999999999 999999988
Q ss_pred CC-----ceeeecCCCcEEEEEE
Q 033482 98 PD-----ITSITIEPGVEVEVTI 115 (118)
Q Consensus 98 ~~-----l~~~~lP~gV~iev~l 115 (118)
++ ||++++|+||++||++
T Consensus 59 ~~~~v~~l~~l~lp~GV~vei~~ 81 (83)
T 3r2c_J 59 TPQTIEALMEISLPAGVDVEVKM 81 (83)
T ss_dssp CHHHHHHHHTCCCCTTCEEEEEC
T ss_pred CHHHHHHHhCCCCCCCcEEEEEE
Confidence 66 8999999999999987
No 11
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=55.76 E-value=35 Score=21.30 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=32.1
Q ss_pred EEEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeee
Q 033482 22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPV 57 (118)
Q Consensus 22 ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi 57 (118)
-+.+.+.|.|-..++.+......+|+..|+++....
T Consensus 28 dlevefdstddkeieeferdmedlakktgvqiqkqw 63 (83)
T 2ln3_A 28 DLEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQKQW 63 (83)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ceEEEecCCChHHHHHHHhHHHHHHHhhchhHHHHh
Confidence 467889999999999999999999999999987653
No 12
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=44.73 E-value=11 Score=28.52 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=23.9
Q ss_pred eecCchhHHHHHHHHHHHHhhcCCeeeeeecCCceeE
Q 033482 28 SSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64 (118)
Q Consensus 28 kS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~LPtk~~ 64 (118)
.-.+...|+.+|+.|.-.|+..|+.+.|++|-|.++.
T Consensus 185 ~dl~a~~Le~avK~IlGTArSMGi~V~g~~p~~~~~~ 221 (224)
T 3bbo_K 185 PDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKE 221 (224)
T ss_dssp TTSCCSSHHHHHHHHHHHHTTTTEEEC----------
T ss_pred hhhcCcCHHHHHHHHHHHHHhCeeEEeCCCCChhhcc
Confidence 3456678999999999999999999999988777654
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=32.71 E-value=91 Score=19.42 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=27.1
Q ss_pred EEEEEeecCchhHHHHHHHHHHHHhhcCCeeeeeecC
Q 033482 23 IRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 59 (118)
Q Consensus 23 i~I~LkS~d~~~L~~~~~~i~~~~~~~~i~~~Gpi~L 59 (118)
+.|++.+--..+-...++...++++.+++.+.-.++|
T Consensus 42 leiritgvpeqvrkelakeaerlakefnitvtytirl 78 (85)
T 2kl8_A 42 LEIRITGVPEQVRKELAKEAERLAKEFNITVTYTIRL 78 (85)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred eEEEEecChHHHHHHHHHHHHHHHHhcCeEEEEEEEe
Confidence 5577777777777777788888888888877665555
No 14
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=26.09 E-value=34 Score=24.87 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=29.8
Q ss_pred CccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCC
Q 033482 12 GLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRL 51 (118)
Q Consensus 12 ~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i 51 (118)
|+...-+..++-.|.|++.|...+-.++..|.+++.-.|-
T Consensus 129 gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~~vk~k 168 (188)
T 4a17_E 129 GVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEK 168 (188)
T ss_dssp TCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHTCCCSS
T ss_pred CeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhcccCCC
Confidence 4444434434457999999999999999999998865443
No 15
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=24.70 E-value=42 Score=20.93 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=23.4
Q ss_pred EeecCchhHHHHHHHHHHHHhhcCCeeee
Q 033482 27 LSSKNVKNLEKVCTDLVRGAKDKRLRVKG 55 (118)
Q Consensus 27 LkS~d~~~L~~~~~~i~~~~~~~~i~~~G 55 (118)
..-.+...|+.+|+.|.-.|++.|+.+.|
T Consensus 48 ~~dl~a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 48 MPDLNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp GGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence 33456778999999999999999988764
No 16
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=23.71 E-value=41 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=29.2
Q ss_pred CccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcCC
Q 033482 12 GLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRL 51 (118)
Q Consensus 12 ~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i 51 (118)
|+...-+..++-+|.|++.|...+-.++..|.+++.-.|-
T Consensus 130 GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq~~~vk~k 169 (190)
T 3iz5_F 130 GVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNK 169 (190)
T ss_dssp SCEEEECCTTTCEEEEEESCHHHHHHHHHHHHHHTCCCSS
T ss_pred CeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHhhccccCC
Confidence 4443333333456999999999999999999998865443
No 17
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.63 E-value=50 Score=24.02 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=25.4
Q ss_pred EEEEEeecCchhHHHHHHHHHHHHhhcCCe
Q 033482 23 IRITLSSKNVKNLEKVCTDLVRGAKDKRLR 52 (118)
Q Consensus 23 i~I~LkS~d~~~L~~~~~~i~~~~~~~~i~ 52 (118)
-+|.|+|.|...+-.++..|..+++-.+-+
T Consensus 142 t~I~v~GiDKq~Vgq~AA~IR~~~~vk~kD 171 (192)
T 2zkr_e 142 DELILEGNDIELVSNSAALIQQATTVKNKD 171 (192)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCCSSSC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhhCcCCCCC
Confidence 469999999999999999999988654433
No 18
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=21.07 E-value=1.4e+02 Score=17.57 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=25.4
Q ss_pred eeEEEEEEeecCchhHHHHHHHHHHHHhhcCC
Q 033482 20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRL 51 (118)
Q Consensus 20 ~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~i 51 (118)
+.+++|.+.....+.-++++..+......+|.
T Consensus 1 mervrisitartkkeaekfaailikvfaelgy 32 (62)
T 2gjh_A 1 MERVRISITARTKKEAEKFAAILIKVFAELGY 32 (62)
T ss_dssp -CEEEEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEecchhHHHHHHHHHHHHHHHhCc
Confidence 35789999999999999988887776666664
No 19
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=20.89 E-value=38 Score=24.70 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred CccccccceeEEEEEEeecCchhHHHHHHHHHHHHhhcC
Q 033482 12 GLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKR 50 (118)
Q Consensus 12 ~~~~~~~~~~ki~I~LkS~d~~~L~~~~~~i~~~~~~~~ 50 (118)
|+...-+..++-+|.|++.|...+-.++..|.+++.-.+
T Consensus 131 Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~~vk~ 169 (191)
T 3u5e_H 131 GVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRN 169 (191)
T ss_dssp TEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTTCCCS
T ss_pred CEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhcccCC
Confidence 444333333345799999999999999999999886444
Done!