RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033482
(118 letters)
>gnl|CDD|173336 PTZ00039, PTZ00039, 40S ribosomal protein S20; Provisional.
Length = 115
Score = 165 bits (419), Expect = 2e-54
Identities = 78/113 (69%), Positives = 93/113 (82%), Gaps = 4/113 (3%)
Query: 7 KPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHI 66
K K G EE Q ++HKIRITL+SKN+K++EKVC D++ GAK+K L+V GPVRMP K L I
Sbjct: 3 KIKKGGEEEEQNRLHKIRITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTLRI 62
Query: 67 TTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
TTRKSPCGEGTNTWDRFE+R++KRVIDL+SS D ITSI I+PGVEVEV I
Sbjct: 63 TTRKSPCGEGTNTWDRFEMRIYKRVIDLYSSSDVVTQITSINIDPGVEVEVII 115
>gnl|CDD|130118 TIGR01046, S10_Arc_S20_Euk, ribosomal protein
S10(archaeal)/S20(eukaryotic). This model describes the
archaeal ribosomal protein and its equivalents in
eukaryotes [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 99
Score = 119 bits (300), Expect = 2e-36
Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
Query: 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
HK RI L+S NV++LEKVC + R A+ +R+ GPV +PTK L + TRKSP GEG+ TW
Sbjct: 1 HKARIKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGSKTW 60
Query: 81 DRFELRVHKRVIDLFSSPD----ITSITIEPGVEVEVTI 115
DR+E+R+HKR+ID+ + I I++ VE+E+T+
Sbjct: 61 DRWEMRIHKRLIDIEADERALRQIMRISVPEDVEIEITL 99
>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e. This family
includes small ribosomal subunit S10 from prokaryotes
and S20 from eukaryotes.
Length = 97
Score = 108 bits (272), Expect = 3e-32
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 23 IRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDR 82
IRI L S + K LE +V AK ++V GP+ +PTK L +T +SP + + ++
Sbjct: 1 IRIKLKSYDHKLLESYVKFIVEAAKRLGIKVSGPIPLPTKRLRVTVLRSPHVD-KKSREQ 59
Query: 83 FELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
FE+R HKR+ID++ + + I + GV+VE+ +
Sbjct: 60 FEMRTHKRLIDIYDATPETVDQLLRIDLPEGVDVEIKL 97
>gnl|CDD|223129 COG0051, RpsJ, Ribosomal protein S10 [Translation, ribosomal
structure and biogenesis].
Length = 104
Score = 97.3 bits (243), Expect = 9e-28
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
KIRI L S + + L++VC ++V AK VKGP+ +PTK +T +SP GE +
Sbjct: 4 QKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEKD-SR 62
Query: 81 DRFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTIAD 117
++FE+R HKR+ID+ + + + GV+VE+ +
Sbjct: 63 EQFEMRTHKRLIDIVDPTPKTVDALMRLDLPAGVDVEIKLES 104
>gnl|CDD|183392 PRK12271, rps10p, 30S ribosomal protein S10P; Reviewed.
Length = 102
Score = 88.1 bits (219), Expect = 4e-24
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 21 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTW 80
K RI LSS N ++L++VC + A+ + + GP+ +PTK L + TRKSP GEGT TW
Sbjct: 2 QKARIRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATW 61
Query: 81 DRFELRVHKRVIDL 94
D +E+R+HKR+ID+
Sbjct: 62 DHWEMRIHKRLIDI 75
>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated.
Length = 101
Score = 55.8 bits (135), Expect = 2e-11
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 19 QIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTN 78
KIRI L S N + L C ++ A GP+ +PTK +SP +
Sbjct: 5 TNAKIRIKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSP---HVD 61
Query: 79 TWDR--FELRVHKRVIDLFSSPD-----ITSITIEPGVEV 111
R FE+R HKR+ID++ + + + PGV++
Sbjct: 62 KDSREHFEIRTHKRIIDIYYPSSETIDSLMKLDLPPGVDI 101
>gnl|CDD|130121 TIGR01049, rpsJ_bact, ribosomal protein S10, bacterial/organelle.
This model describes bacterial 30S ribosomal protein
S10. In species that have a transcription
antitermination complex, or N utilization substance,
with NusA, NusB, NusG, and NusE, this ribosomal protein
is responsible for NusE activity. Included in the family
are one member each from Saccharomyces cerevisiae and
Schizosaccharomyces pombe. These proteins lack an
N-terminal mitochondrial transit peptide but contain
additional sequence C-terminal to the ribosomal S10
protein region [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 99
Score = 48.4 bits (116), Expect = 1e-08
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
KIRI L S + + L++ +V AK +VKGP+ +PTK T +SP + +
Sbjct: 2 KIRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSR-E 60
Query: 82 RFELRVHKRVIDLFSSPDITSITIE--------PGVEVEVTI 115
+FE+R HKR+ID+ D TI+ GV++E+ +
Sbjct: 61 QFEIRTHKRLIDII---DPNPKTIDALMKLDLPAGVDIEIKL 99
>gnl|CDD|179076 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.
Length = 102
Score = 46.7 bits (112), Expect = 5e-08
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
KIRI L + + + L++ +V AK +V+GP+ +PTK T +SP N
Sbjct: 5 KIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSP---HVNKDS 61
Query: 82 R--FELRVHKRVIDLFSSPDITSITIE--------PGVEVEV 113
R FE+R HKR+ID+ D T T++ GV+VE+
Sbjct: 62 REQFEIRTHKRLIDI---VDPTPKTVDALMKLDLPAGVDVEI 100
>gnl|CDD|152726 pfam12291, DUF3623, Protein of unknown function (DUF3623). This
family of proteins is found in bacteria. Proteins in
this family are typically between 261 and 345 amino
acids in length.
Length = 261
Score = 26.9 bits (60), Expect = 2.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 69 RKSPCGEGTNTWDRF 83
R++PC G W+RF
Sbjct: 92 RRTPCPPGARGWERF 106
>gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 26.7 bits (60), Expect = 3.4
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 23 IRITLSSKNVKNLEKVCTDLVRGAK----DKRLRVKGPVRMP 60
+ S+K+ + EK L + V GP P
Sbjct: 585 ALLRASAKDEEKAEKFAQQLAALLPNLLPLLDVEVLGPAPAP 626
>gnl|CDD|232827 TIGR00109, hemH, ferrochelatase. Human ferrochelatase, found at
the mitochondrial inner membrane inner surface, was
shown in an active recombinant form to be a homodimer.
This contrasts to an earlier finding by gel filtration
that overexpressed E. coli ferrochelatase runs as a
monomer [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 322
Score = 26.3 bits (58), Expect = 5.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 2 AYAAMKPTKPGLEEAQEQIHKIRIT 26
Y AM+ +P EEA +++ K +
Sbjct: 95 VYIAMRYGEPFTEEAVKELLKDGVE 119
>gnl|CDD|224103 COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid
metabolism].
Length = 202
Score = 25.7 bits (57), Expect = 6.5
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 54 KGPVRMPT--KVLHITTRKSPCGEGTNTWDRFE--LRVHKRVIDLFSSPDITSITIE 106
GPV + T KVL +T+R EG + D E LR + + D+ + E
Sbjct: 125 NGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLRTILGFLGI---TDVEFVFAE 178
>gnl|CDD|132859 cd07220, Pat_PNPLA2, Patatin-like phospholipase domain containing
protein 2. PNPLA2 plays a key role in hydrolysis of
stored triacylglecerols and is also known as adipose
triglyceride lipase (ATGL). Members of this family
share a patain domain, initially discovered in potato
tubers. ATGL is expressed in white and brown adipose
tissue in high mRNA levels. Mutations in PNPLA2
encoding adipose triglyceride lipase (ATGL) leads to
neutral lipid storage disease (NLSD) which is
characterized by the accumulation of triglycerides in
multiple tissues. ATGL mutations are also commonly
associated with severe forms of skeletal- and
cardio-myopathy. This family includes patatin-like
proteins: TTS-2.2 (transport-secretion protein 2.2),
PNPLA2 (Patatin-like phospholipase domain-containing
protein 2), and iPLA2-zeta (Calcium-independent
phospholipase A2) from Homo sapiens.
Length = 249
Score = 25.5 bits (56), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 35 LEKVCTDLVRGAKDKRLRVKGPV 57
L + ++R AK+ R R GP+
Sbjct: 59 LGECGASVIRVAKEARKRFLGPL 81
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 25.5 bits (57), Expect = 9.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 3 YAAMKPTKPGLEEAQEQIHKIR 24
Y M + GL++A E+I +R
Sbjct: 515 YCGMARNEEGLKKALEKIRALR 536
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,787,996
Number of extensions: 480635
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 20
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)