RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033482
         (118 letters)



>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli
           [TaxId: 562]}
          Length = 98

 Score =  100 bits (250), Expect = 2e-29
 Identities = 24/99 (24%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           +IRI L + + + +++   ++V  AK    +V+GP+ +PT+    T   SP     +  D
Sbjct: 1   RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHV-NKDARD 59

Query: 82  RFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEVTI 115
           ++E+R H R++D+    +     +  + +  GV+V++++
Sbjct: 60  QYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 98


>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score = 99.4 bits (248), Expect = 3e-29
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWD 81
           KIRI L   + K L+     +V  A+    +V GP+ +PT+V   T  + P  +  ++ +
Sbjct: 1   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPF-KHKDSRE 59

Query: 82  RFELRVHKRVIDLFSSPD-----ITSITIEPGVEVEV 113
            FELR H R++D+ +        + ++ +  GVE+E+
Sbjct: 60  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEI 96


>d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White
           mustard (Sinapis alba) [TaxId: 3728]}
          Length = 499

 Score = 27.5 bits (60), Expect = 0.41
 Identities = 9/29 (31%), Positives = 11/29 (37%)

Query: 74  GEGTNTWDRFELRVHKRVIDLFSSPDITS 102
           G G N WD F  R   +      + D T 
Sbjct: 43  GRGLNIWDGFTHRYPNKSGPDHGNGDTTC 71


>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
           bicolor [TaxId: 4558]}
          Length = 484

 Score = 25.6 bits (55), Expect = 1.7
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 74  GEGTNTWDRFELRVHKRVIDLFSSPDITS 102
           G+G +TWD F     + ++D  S+ D+ +
Sbjct: 36  GKGPSTWDHFCHNFPEWIVD-RSNGDVAA 63


>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping
           white clover (Trifolium repens) [TaxId: 3899]}
          Length = 490

 Score = 25.1 bits (54), Expect = 2.7
 Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 74  GEGTNTWDRFELRVHKRVIDLFSSPDITS 102
           G+G + WD F  +  +++ D  ++ D+  
Sbjct: 42  GKGPSIWDTFTHKYPEKIKD-RTNGDVAI 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,955
Number of extensions: 17993
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 14
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)