Query 033484
Match_columns 118
No_of_seqs 112 out of 985
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.7E-46 5.9E-51 279.5 12.7 112 1-113 9-120 (167)
2 3er0_A Eukaryotic translation 100.0 4.8E-45 1.6E-49 271.7 9.5 111 1-113 11-123 (167)
3 1x6o_A Eukaryotic initiation f 100.0 1.1E-43 3.9E-48 265.8 12.0 112 1-113 9-128 (174)
4 3cpf_A Eukaryotic translation 100.0 2.8E-41 9.7E-46 244.2 11.7 98 16-114 1-98 (138)
5 1iz6_A Initiation factor 5A; S 100.0 4.3E-40 1.5E-44 238.1 12.0 96 17-113 2-97 (138)
6 1bkb_A Translation initiation 100.0 7.9E-40 2.7E-44 235.9 11.7 94 19-113 6-99 (136)
7 2eif_A IF-5A, protein (eukaryo 100.0 6.4E-39 2.2E-43 231.4 12.2 96 17-113 6-101 (136)
8 3a5z_B EF-P, elongation factor 100.0 5E-37 1.7E-41 232.5 11.1 95 17-113 2-96 (191)
9 1ueb_A EF-P, TT0860, elongatio 100.0 1.1E-36 3.8E-41 229.3 11.0 90 22-113 2-91 (184)
10 1yby_A Translation elongation 100.0 9.9E-36 3.4E-40 228.9 10.8 95 17-113 27-121 (215)
11 3tre_A EF-P, elongation factor 100.0 1.9E-35 6.6E-40 223.7 11.7 91 21-113 6-96 (191)
12 3oyy_A EF-P, elongation factor 100.0 7.3E-35 2.5E-39 220.6 11.3 90 21-113 4-93 (191)
13 1khi_A HEX1; membrane sealing, 99.9 9.9E-26 3.4E-30 168.5 10.1 93 11-111 24-125 (176)
14 3r8s_P 50S ribosomal protein L 76.0 9.5 0.00033 26.1 6.3 66 22-89 14-88 (114)
15 3v2d_T 50S ribosomal protein L 74.1 11 0.00037 27.0 6.4 66 22-89 17-91 (146)
16 3qx1_A FAS-associated factor 1 72.5 3.2 0.00011 26.0 3.0 32 52-84 2-33 (84)
17 2ftc_B Mitochondrial ribosomal 71.9 15 0.00052 25.7 6.7 54 26-83 50-111 (136)
18 2zjr_M 50S ribosomal protein L 69.4 9.3 0.00032 27.8 5.3 65 22-88 22-95 (166)
19 2ftc_K 39S ribosomal protein L 65.7 27 0.00091 23.2 6.8 51 26-78 3-60 (98)
20 2fhd_A RAD9 homolog, DNA repai 58.2 12 0.00042 26.9 4.0 54 8-62 46-110 (153)
21 3frn_A Flagellar protein FLGA; 55.1 25 0.00084 27.5 5.7 29 59-87 242-270 (278)
22 2f9h_A PTS system, IIA compone 54.9 12 0.0004 26.0 3.5 21 25-45 53-73 (129)
23 1k0h_A Gpfii; twisted beta-san 54.4 3 0.0001 28.4 0.3 32 24-58 72-103 (117)
24 1rl2_A Protein (ribosomal prot 53.4 15 0.00051 25.8 3.8 61 18-82 41-123 (137)
25 1ed7_A Chitinase A1, (CHBD-CHI 52.6 4.7 0.00016 22.8 0.9 25 26-50 7-31 (45)
26 1at0_A 17-hedgehog; developmen 51.8 21 0.00073 24.4 4.4 31 18-48 83-119 (145)
27 1giy_D 50S ribosomal protein L 50.8 31 0.0011 25.2 5.3 62 18-83 41-124 (178)
28 3isy_A Bsupi, intracellular pr 47.9 62 0.0021 21.9 7.6 56 43-101 9-65 (120)
29 2z14_A EF-hand domain-containi 44.1 21 0.00072 24.7 3.4 26 21-46 83-108 (133)
30 1at0_A 17-hedgehog; developmen 40.3 78 0.0027 21.5 5.9 58 21-84 15-77 (145)
31 1mvg_A Liver basic fatty acid 40.1 67 0.0023 21.5 5.4 38 59-96 46-83 (125)
32 1p6p_A Fatty acid-binding prot 37.5 64 0.0022 21.6 5.0 37 60-96 47-83 (125)
33 3od3_A Blue copper oxidase CUE 37.5 40 0.0014 27.8 4.6 52 28-87 181-232 (488)
34 2pp6_A Gifsy-2 prophage ATP-bi 36.1 75 0.0026 21.2 5.0 37 15-52 50-88 (102)
35 3gs9_A Protein GP18; NP_465809 35.3 63 0.0022 25.2 5.3 53 13-67 34-94 (342)
36 2buj_A Serine/threonine-protei 34.8 84 0.0029 22.5 5.6 41 28-73 19-59 (317)
37 1ifc_A Intestinal fatty acid b 34.6 82 0.0028 21.2 5.2 37 60-96 48-84 (132)
38 3j21_B 50S ribosomal protein L 32.9 45 0.0015 25.5 3.9 62 17-82 67-150 (239)
39 2exd_A NFED short homolog; mem 32.8 55 0.0019 20.4 3.8 28 25-52 25-52 (80)
40 1p9k_A ORF, hypothetical prote 32.7 42 0.0014 20.3 3.1 19 25-43 60-78 (79)
41 1mdc_A Insect fatty acid bindi 31.8 1.1E+02 0.0037 20.6 5.4 37 60-96 49-85 (132)
42 3v2d_D 50S ribosomal protein L 31.7 59 0.002 25.3 4.4 53 26-82 124-184 (276)
43 3ppt_A Sodium-calcium exchange 31.3 1E+02 0.0035 20.8 5.3 36 60-95 49-84 (133)
44 2lcj_A PAB POLC intein; hydrol 30.7 84 0.0029 22.0 4.9 17 20-36 104-120 (185)
45 1o8v_A Fatty acid binding prot 30.7 1.1E+02 0.0037 20.6 5.3 37 60-96 51-87 (134)
46 1b56_A Fatty acid binding prot 30.6 1E+02 0.0036 20.7 5.2 37 60-96 52-88 (135)
47 4a60_A Fatty acid-binding prot 30.1 97 0.0033 21.7 5.1 37 60-96 72-108 (154)
48 2l55_A SILB,silver efflux prot 30.1 86 0.0029 19.6 4.4 30 23-52 44-78 (82)
49 2qo4_A Liver-basic fatty acid 30.1 76 0.0026 21.2 4.4 37 60-96 48-84 (126)
50 1ggl_A Protein (cellular retin 29.2 1.3E+02 0.0045 20.2 6.0 37 60-96 49-87 (134)
51 2f73_A L-FABP, fatty acid-bind 28.9 88 0.003 21.7 4.6 40 59-98 69-109 (149)
52 2rcq_A CRBP-II, retinol-bindin 27.5 1E+02 0.0035 21.0 4.8 36 60-95 53-90 (141)
53 1eal_A Gastrotropin, ileal lip 27.4 1.4E+02 0.0047 19.9 5.4 37 60-96 47-84 (127)
54 2kj6_A Tubulin folding cofacto 27.1 33 0.0011 22.1 2.0 31 52-82 9-40 (97)
55 2k50_A Replication factor A re 26.5 1.3E+02 0.0043 19.1 6.5 51 22-76 8-62 (115)
56 2a0a_A DER F 13; beta barrel, 26.5 1.4E+02 0.0047 20.0 5.2 37 60-96 49-85 (131)
57 3q6l_A Fatty acid-binding prot 26.4 1.2E+02 0.004 21.2 4.9 37 60-96 70-106 (152)
58 1v10_A Laccase; multicopper bl 26.3 1.5E+02 0.0051 24.2 6.3 49 28-84 189-247 (521)
59 1hfu_A Laccase 1; oxidoreducta 25.8 1.6E+02 0.0053 23.9 6.3 48 28-83 163-219 (503)
60 1vyf_A SM14, 14 kDa fatty acid 25.8 1.2E+02 0.0042 20.4 4.9 36 60-95 51-86 (135)
61 1vq8_A 50S ribosomal protein L 25.7 61 0.0021 24.8 3.5 61 18-82 66-148 (240)
62 3rsw_A Fatty acid-binding prot 25.5 1.1E+02 0.0039 21.4 4.8 37 60-96 75-111 (158)
63 3p6d_A Fatty acid-binding prot 25.3 1.3E+02 0.0044 20.5 4.9 36 60-95 57-92 (139)
64 1fdq_A Fatty acid-binding prot 25.3 89 0.003 20.9 4.0 36 60-95 49-84 (131)
65 3vg7_A Fatty acid-binding prot 25.1 1.4E+02 0.0047 20.1 5.0 37 60-96 51-87 (132)
66 3rby_A Uncharacterized protein 25.0 55 0.0019 25.0 3.1 28 19-46 217-244 (245)
67 2g23_A PHS, phenoxazinone synt 24.8 1.5E+02 0.0052 25.0 6.2 43 28-78 252-294 (612)
68 1o9y_A HRCQ2; secretory protei 23.7 1.4E+02 0.0047 18.5 4.6 19 24-42 33-54 (84)
69 1ftp_A Muscle fatty acid bindi 23.4 1.7E+02 0.0059 19.6 6.1 37 60-96 51-87 (133)
70 1crb_A Cellular retinol bindin 23.2 1.3E+02 0.0045 20.2 4.6 37 60-96 49-87 (134)
71 2lba_A BABP protein; ileal bIl 23.0 1.1E+02 0.0038 20.7 4.2 37 60-96 52-89 (136)
72 3r8s_C 50S ribosomal protein L 22.6 86 0.0029 24.4 3.8 53 26-82 122-182 (271)
73 3plu_A Ubiquitin-like modifier 22.6 87 0.003 20.3 3.4 28 54-82 18-45 (93)
74 1o6a_A Putative flagellar moto 22.5 1.2E+02 0.0042 19.2 4.1 19 24-42 37-58 (96)
75 3tqy_A Single-stranded DNA-bin 22.5 1.3E+02 0.0046 20.8 4.6 14 27-40 74-87 (158)
76 2uxt_A Protein SUFI, SUFI; oxi 22.5 1.4E+02 0.0048 23.8 5.3 47 28-82 180-226 (451)
77 1wjn_A Tubulin-folding protein 22.4 86 0.003 19.4 3.3 29 54-82 6-36 (97)
78 1zpu_A Iron transport multicop 22.3 1.5E+02 0.005 24.4 5.5 48 29-84 166-213 (534)
79 1lpj_A Retinol-binding protein 21.7 1.6E+02 0.0056 19.6 4.8 33 60-92 49-83 (133)
80 1rie_A Rieske iron-sulfur prot 21.7 1.3E+02 0.0043 19.9 4.2 27 19-45 6-34 (129)
81 1ix5_A FKBP; ppiase, isomerase 21.3 67 0.0023 22.0 2.8 20 26-45 103-122 (151)
82 4a17_A RPL8; eukaryotic riboso 21.1 1E+02 0.0035 23.8 4.0 64 17-82 73-158 (264)
83 2wsd_A Spore coat protein A; o 21.0 1.7E+02 0.0058 23.7 5.6 49 28-84 228-276 (513)
84 2z0t_A Putative uncharacterize 21.0 88 0.003 20.8 3.2 20 26-45 33-54 (109)
85 3iz5_B 60S ribosomal protein L 20.9 1.1E+02 0.0036 23.7 4.1 54 27-82 96-157 (261)
86 1y43_B Aspergillopepsin II hea 20.8 1.5E+02 0.0052 21.2 4.7 45 20-77 50-94 (173)
87 2kcp_A 30S ribosomal protein S 20.6 1E+02 0.0036 20.4 3.5 33 22-58 53-85 (98)
88 2kl5_A Uncharacterized protein 20.6 65 0.0022 21.8 2.5 23 23-45 3-25 (110)
89 3p02_A Uncharacterized protein 20.4 2.5E+02 0.0086 22.0 6.2 31 39-69 125-160 (317)
90 3vdy_A SSB, single-stranded DN 20.4 1.4E+02 0.0048 19.2 4.1 14 27-40 68-81 (116)
91 4a1y_A Myelin P2 protein; tran 20.3 1.2E+02 0.0039 20.6 3.8 36 60-95 51-86 (133)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-46 Score=279.48 Aligned_cols=112 Identities=75% Similarity=1.153 Sum_probs=94.6
Q ss_pred CCccccccccccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCc
Q 033484 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (118)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ 80 (118)
|||++|+|+ +++||++.|+||++++||+|++|+++|+||+|++++++||||||+|++|+++|||+||+++|.+|+|+++
T Consensus 9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEeeeeEEEeccCCCeeEeecCCChHHH
Q 033484 81 CDVPHVTRTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 81 ve~~~ve~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
+++|.|++++|||||+|++++|+|||++||||+
T Consensus 88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~ 120 (167)
T 3hks_A 88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKD 120 (167)
T ss_dssp EEEECCEEEEEEEEEECTTSBEEEECTTSCEEC
T ss_pred EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEE
Confidence 999999999999999977666699999999996
No 2
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-45 Score=271.68 Aligned_cols=111 Identities=59% Similarity=0.920 Sum_probs=98.2
Q ss_pred CCccccccccccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCc
Q 033484 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (118)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ 80 (118)
|||++|.|+ +++||++.|+||++++||+|++|+++|+||+|++++++||||||+|++|+++|||+||+++|.+|+|+++
T Consensus 11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 899999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEeeeeEEEeccCCCeeEeec--CCChHHH
Q 033484 81 CDVPHVTRTDYQLIDISEDGFVCSYF--VLSCSFY 113 (118)
Q Consensus 81 ve~~~ve~~~~qyly~d~d~~l~FMd--~etyeq~ 113 (118)
+++|.|++++|||||+||+.| +||| .+|||||
T Consensus 90 ve~~~ver~~~QyLY~dg~~~-~FMD~~~etyeqi 123 (167)
T 3er0_A 90 MEVPVVKRNEYQLLDIDDGFL-SLMNMDGDTKDDV 123 (167)
T ss_dssp EEECCCCEEEEECCCCTTTTC-CCCCSSSCCCSCC
T ss_pred cccceEEEeeEEEEEEcCCEE-EEEeCCCCeeEEE
Confidence 999999999999999998776 9999 8999997
No 3
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=1.1e-43 Score=265.76 Aligned_cols=112 Identities=46% Similarity=0.754 Sum_probs=90.1
Q ss_pred CCcc--ccccccccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCC
Q 033484 1 MSDE--EHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (118)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~ 78 (118)
|||+ +++|+ +++|+++.|+|+++++||+|++|+++|+||+|++++++||||||+|++|+++|||+||+++|.+|+++
T Consensus 9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 6774 44599 99999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CceeecEEEeeeeEEEeccCC------CeeEeecCCChHHH
Q 033484 79 HNCDVPHVTRTDYQLIDISED------GFVCSYFVLSCSFY 113 (118)
Q Consensus 79 ~~ve~~~ve~~~~qyly~d~d------~~l~FMd~etyeq~ 113 (118)
+++++|+|++++|||||+||| ++|+|||+|||||+
T Consensus 88 ~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~ 128 (174)
T 1x6o_A 88 HNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE 128 (174)
T ss_dssp SEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEEC
T ss_pred CEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEE
Confidence 999999999999999999998 46799999999986
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=244.23 Aligned_cols=98 Identities=57% Similarity=0.900 Sum_probs=90.4
Q ss_pred cceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033484 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 16 ~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
++.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.||+|++++++|+|++++|||||
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly 80 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ccCCCeeEeecCCChHHHh
Q 033484 96 ISEDGFVCSYFVLSCSFYL 114 (118)
Q Consensus 96 ~d~d~~l~FMd~etyeq~~ 114 (118)
+||+.| +|||+|||||+-
T Consensus 81 ~dg~~~-~fMD~etyeq~~ 98 (138)
T 3cpf_A 81 IQDGYL-SLLQDSGEVRED 98 (138)
T ss_dssp EETTEE-EEECTTSCEECC
T ss_pred ecCCEE-EEEcCCCCeEee
Confidence 998776 999999999974
No 5
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=4.3e-40 Score=238.14 Aligned_cols=96 Identities=28% Similarity=0.516 Sum_probs=93.5
Q ss_pred ceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.||++++++++|+|+++++||||+
T Consensus 2 ~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~ 81 (138)
T 1iz6_A 2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI 81 (138)
T ss_dssp CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEE
T ss_pred CceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeecCCChHHH
Q 033484 97 SEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 97 d~d~~l~FMd~etyeq~ 113 (118)
||+.| +|||+|||||+
T Consensus 82 dg~~~-~fMD~etyeq~ 97 (138)
T 1iz6_A 82 TPDTV-QIMDMETYETF 97 (138)
T ss_dssp CSSEE-EEECTTTCCEE
T ss_pred CCCEE-EEEeCCCCceE
Confidence 99766 99999999996
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=7.9e-40 Score=235.94 Aligned_cols=94 Identities=33% Similarity=0.556 Sum_probs=91.9
Q ss_pred eeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccC
Q 033484 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE 98 (118)
Q Consensus 19 t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~ 98 (118)
|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.||++++++++|+|+++++||||+||
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999998
Q ss_pred CCeeEeecCCChHHH
Q 033484 99 DGFVCSYFVLSCSFY 113 (118)
Q Consensus 99 d~~l~FMd~etyeq~ 113 (118)
+.| +|||+|||||+
T Consensus 86 ~~~-~fMD~etyeq~ 99 (136)
T 1bkb_A 86 DVI-QLMDMRDYKTI 99 (136)
T ss_dssp SEE-EEEETTTCCEE
T ss_pred CEE-EEEeCCCCeEE
Confidence 776 99999999996
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=6.4e-39 Score=231.40 Aligned_cols=96 Identities=33% Similarity=0.532 Sum_probs=93.2
Q ss_pred ceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.++++++||||+
T Consensus 6 ~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~ 85 (136)
T 2eif_A 6 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAI 85 (136)
T ss_dssp SSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEE
T ss_pred EeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeecCCChHHH
Q 033484 97 SEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 97 d~d~~l~FMd~etyeq~ 113 (118)
||+.| +|||+|||||+
T Consensus 86 dg~~~-~fMD~etyeq~ 101 (136)
T 2eif_A 86 MGDMV-QIMDLQTYETL 101 (136)
T ss_dssp ETTEE-EEEETTTCCEE
T ss_pred cCCEE-EEEeCCCceEE
Confidence 98776 89999999997
No 8
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=5e-37 Score=232.51 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=89.7
Q ss_pred ceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
|..+++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|++++++|.|+|+++++||||.
T Consensus 2 ~~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~ 80 (191)
T 3a5z_B 2 SHMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYN 80 (191)
T ss_dssp ----CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEE
T ss_pred CccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEe
Confidence 344679999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeecCCChHHH
Q 033484 97 SEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 97 d~d~~l~FMd~etyeq~ 113 (118)
|||+| +|||+||||||
T Consensus 81 dgd~~-~FMD~etyeQ~ 96 (191)
T 3a5z_B 81 DGEFW-HFMNNETFEQL 96 (191)
T ss_dssp CSSCE-EEECTTTCCEE
T ss_pred CCCEE-EEeeCCCCeEE
Confidence 99988 99999999997
No 9
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1.1e-36 Score=229.34 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=88.6
Q ss_pred EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCCe
Q 033484 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101 (118)
Q Consensus 22 i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~~ 101 (118)
+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|++++|||||+|||+|
T Consensus 2 i~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~ 80 (184)
T 1ueb_A 2 ISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGEEM 80 (184)
T ss_dssp EEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETTEE
T ss_pred cchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCCEE
Confidence 7899999999999999999999999999999 999999999999999999999999999999999999999999999988
Q ss_pred eEeecCCChHHH
Q 033484 102 VCSYFVLSCSFY 113 (118)
Q Consensus 102 l~FMd~etyeq~ 113 (118)
+|||+||||||
T Consensus 81 -~FMD~etyeq~ 91 (184)
T 1ueb_A 81 -VFMDLETYEQF 91 (184)
T ss_dssp -EEEETTTCCEE
T ss_pred -EEeeCCCceeE
Confidence 99999999997
No 10
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=9.9e-36 Score=228.92 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=87.4
Q ss_pred ceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
.-..++++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|.+|+++++++.|+|++++|||||.
T Consensus 27 ~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~ 105 (215)
T 1yby_A 27 KAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYN 105 (215)
T ss_dssp ----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEE
T ss_pred hCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEe
Confidence 344568999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCeeEeecCCChHHH
Q 033484 97 SEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 97 d~d~~l~FMd~etyeq~ 113 (118)
|||.| +|||+||||||
T Consensus 106 Dgd~y-~FMD~ETyEQi 121 (215)
T 1yby_A 106 DGDLY-YFMDTETFEQL 121 (215)
T ss_dssp ETTEE-EEECTTTCCEE
T ss_pred CCCEE-EEccCCCCeeE
Confidence 99987 99999999997
No 11
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=1.9e-35 Score=223.74 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=89.2
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCC
Q 033484 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~ 100 (118)
++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.++++++||||.||+.
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 84 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGEF 84 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSSC
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCCc
Confidence 58999999999999999999999999999999 99999999999999999999999999999999999999999999988
Q ss_pred eeEeecCCChHHH
Q 033484 101 FVCSYFVLSCSFY 113 (118)
Q Consensus 101 ~l~FMd~etyeq~ 113 (118)
| +|||.||||||
T Consensus 85 ~-~FMD~etyEq~ 96 (191)
T 3tre_A 85 W-HFMTSENYEQH 96 (191)
T ss_dssp E-EEEESSSCCEE
T ss_pred E-EEccCCchHhe
Confidence 7 89999999997
No 12
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-35 Score=220.63 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=87.7
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCC
Q 033484 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~ 100 (118)
++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.++++++||||.||+.
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd~ 82 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADPL 82 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSSS
T ss_pred cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCCE
Confidence 68999999999999999999999999999999 78999999999999999999999999999999999999999999988
Q ss_pred eeEeecCCChHHH
Q 033484 101 FVCSYFVLSCSFY 113 (118)
Q Consensus 101 ~l~FMd~etyeq~ 113 (118)
| +||| ||||||
T Consensus 83 ~-~FMD-etyEq~ 93 (191)
T 3oyy_A 83 Y-VFMD-SEFNQY 93 (191)
T ss_dssp E-EEEE-TTCCEE
T ss_pred E-EEEe-cChhhe
Confidence 7 8999 999997
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=99.93 E-value=9.9e-26 Score=168.51 Aligned_cols=93 Identities=28% Similarity=0.513 Sum_probs=86.2
Q ss_pred ccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEEecCC--------Cce
Q 033484 11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC 81 (118)
Q Consensus 11 ~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~-kpGKhG~A~vrik~knl~TG~~~e~t~~s~--------~~v 81 (118)
+++|+++.|+|+++++||+|.+|+|+|+||+|++++++ ||||| |+.+.+||||+++|...+++ +++
T Consensus 24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm 98 (176)
T 1khi_A 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM 98 (176)
T ss_dssp ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence 68999999999999999999999999999999999999 89999 89999999999999999988 899
Q ss_pred eecEEEeeeeEEEeccCCCeeEeecCCChH
Q 033484 82 DVPHVTRTDYQLIDISEDGFVCSYFVLSCS 111 (118)
Q Consensus 82 e~~~ve~~~~qyly~d~d~~l~FMd~etye 111 (118)
++|+|+ +||+|.++ |+|+.+||.++|+
T Consensus 99 ~VPvVk--~yQlldI~-dg~lsLMd~~G~~ 125 (176)
T 1khi_A 99 LGPVFK--QYRVLDMQ-DGSIVAMTETGDV 125 (176)
T ss_dssp EEECCE--EEEEEEEE-TTEEEEECTTCCE
T ss_pred ccceeE--EEEEEEEc-CCeEEEEeCCCCE
Confidence 999996 99999995 5889999998875
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=76.02 E-value=9.5 Score=26.14 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=42.0
Q ss_pred EecccccCceEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEEecCC-CceeecEEEee
Q 033484 22 QQAGTIRKNGYIVI-----KGRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS-HNCDVPHVTRT 89 (118)
Q Consensus 22 i~~~~lkkG~~i~i-----~g~P~~Vve~~~~---kpGKhG~A~vrik~knl~TG~~~e~t~~s~-~~ve~~~ve~~ 89 (118)
.+..++++|+.|.+ +|+...+--++-. +-|+ |-. -.+.+|++..|.-+|.+|+-. -.++.+.|-++
T Consensus 14 ~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G~~-~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 14 QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-GLH-SAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-GGG-CEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-CCC-eEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 45678999998876 4665544333222 1233 322 258899999999999999854 34444544443
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=74.12 E-value=11 Score=26.95 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=41.2
Q ss_pred EecccccCceEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEEecCC-CceeecEEEee
Q 033484 22 QQAGTIRKNGYIVI-----KGRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS-HNCDVPHVTRT 89 (118)
Q Consensus 22 i~~~~lkkG~~i~i-----~g~P~~Vve~~~~---kpGKhG~A~vrik~knl~TG~~~e~t~~s~-~~ve~~~ve~~ 89 (118)
....++++|++|.+ +|....+--++-. +-|+ |-. -.+.+|++..|.-+|.+|+-. -.|+.+.|-++
T Consensus 17 ~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-Gl~-~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 17 TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-GFN-TTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-GGG-CEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred ccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-CCC-eEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 35668999998876 5654444332221 1133 322 258899999999999999854 34444444443
No 16
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=72.55 E-value=3.2 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=24.3
Q ss_pred CCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033484 52 KHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 52 KhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
-|+...+++.+| +-+|+.+..+|++++++..+
T Consensus 2 ~~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~~v 33 (84)
T 3qx1_A 2 SHMEPVSKLRIR-TPSGEFLERRFLASNKLQIV 33 (84)
T ss_dssp --CCCEEEEEEE-CTTSCEEEEEEETTSBHHHH
T ss_pred CCCCCeEEEEEE-CCCCCEEEEEeCCCCCHHHH
Confidence 355667777777 67899999999999998743
No 17
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=71.88 E-value=15 Score=25.70 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=32.1
Q ss_pred cccCceEEEECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEecCCCceee
Q 033484 26 TIRKNGYIVIKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCDV 83 (118)
Q Consensus 26 ~lkkG~~i~i~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~~s~~~ve~ 83 (118)
+++.|+++-+..-| ..|-.++. +||++|+ +..++..| .++..-.++||++.-.+
T Consensus 50 ~i~~GN~lpL~~iP~Gt~IhNIE~-~pG~gg~laRsAGt~a~ii~k---e~~~~~vrLPSGe~r~v 111 (136)
T 2ftc_B 50 AAREGDAHPLGALPVGTLINNVES-EPGRGAQYIRAAGTCGVLLRK---VNGTAIIQLPSKRQMQV 111 (136)
T ss_pred ccCcCcEEEecccCCCCEEEEEec-cCCCCcEEEEeCCCeEEEEEe---cCCEEEEECCCCCeEEE
Confidence 45556655555544 23333433 8898432 45556665 46777788888877654
No 18
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=69.44 E-value=9.3 Score=27.84 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=41.1
Q ss_pred EecccccCceEEEE-----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEEecCC-CceeecEEEe
Q 033484 22 QQAGTIRKNGYIVI-----KGRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS-HNCDVPHVTR 88 (118)
Q Consensus 22 i~~~~lkkG~~i~i-----~g~P~~Vve~~~~---kpGKhG~A~vrik~knl~TG~~~e~t~~s~-~~ve~~~ve~ 88 (118)
....++++|++|.+ +|+...+--++-. +-|+ |-. -.+.+|++..|.-+|.+|+-. -.|+.+.|-+
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~-Gl~-sTFTVRkis~GvGVER~FplhSP~I~kIEVvr 95 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS-GSR-KSFTVRKISFGEGVERVFPFASPLVNQVTIVE 95 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCC-GGG-CEEEEEEEETTEEEEEEEETTCTTEEEEEEEE
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCC-CCC-cEEEEEEecCCeeEEEEEecCCCccceEEEEe
Confidence 45678999999987 5553333222211 2233 322 358999999999999999864 3444444443
No 19
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=65.68 E-value=27 Score=23.21 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=30.6
Q ss_pred cccCceEEEE----CCeeEEEEEeeEe---cCCCCcccEEEEEEEEccCCcEEEEEecCC
Q 033484 26 TIRKNGYIVI----KGRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (118)
Q Consensus 26 ~lkkG~~i~i----~g~P~~Vve~~~~---kpGKhG~A~vrik~knl~TG~~~e~t~~s~ 78 (118)
++++|+.|.+ .|....+--++-. +-|+ |- --.+.+|++..|.-.|.+|+-.
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~-G~-~~tftvRki~~gvGVEr~fpl~ 60 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSGR-GL-GATFILRNVIEGQGVEICFELY 60 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEECC-CC-CcEEEEEEeccCceEEEEEecC
Confidence 5677777655 2333333222211 1133 32 2358999999999999999853
No 20
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=58.19 E-value=12 Score=26.88 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=36.5
Q ss_pred cccccCCCcceeeEEecccccCceEEEECCe---eEEEEEeeEecC--------CCCcccEEEEEE
Q 033484 8 FESKADAGASKTFPQQAGTIRKNGYIVIKGR---PCKVVEVSTSKT--------GKHGHAKCHFVG 62 (118)
Q Consensus 8 ~~~~~~~~~~~t~~i~~~~lkkG~~i~i~g~---P~~Vve~~~~kp--------GKhG~A~vrik~ 62 (118)
|++.... ......+..=+||+|+.|.+++- ||.|+.+.+.-+ --||++.+.++-
T Consensus 46 FdDs~~~-~V~~~~vk~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 46 FDDATMS-TVNSNQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp ETTSCEE-EEETTSEEESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred EcCCCCC-ccChhhceeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 6633222 45556677789999999999974 799998873322 234778776554
No 21
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=55.13 E-value=25 Score=27.49 Aligned_cols=29 Identities=10% Similarity=0.019 Sum_probs=23.4
Q ss_pred EEEEEEccCCcEEEEEecCCCceeecEEE
Q 033484 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVT 87 (118)
Q Consensus 59 rik~knl~TG~~~e~t~~s~~~ve~~~ve 87 (118)
.++.||+.+|+++.-+..++..++++.+.
T Consensus 242 ~IRVrNl~SgkiV~G~V~~~G~Vrv~~~~ 270 (278)
T 3frn_A 242 TVRAMNVESRKYVFGRVERGPVLRILEVV 270 (278)
T ss_dssp EEEEEC--CCCEEEEEEETTTEEEECC--
T ss_pred EEEEEECCCCCEEEEEEecCCeEEEEEEE
Confidence 58999999999999999999999988765
No 22
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=54.95 E-value=12 Score=26.02 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=19.3
Q ss_pred ccccCceEEEECCeeEEEEEe
Q 033484 25 GTIRKNGYIVIKGRPCKVVEV 45 (118)
Q Consensus 25 ~~lkkG~~i~i~g~P~~Vve~ 45 (118)
.+|++|+.+.++++-|.|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999865
No 23
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=54.40 E-value=3 Score=28.40 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=25.3
Q ss_pred cccccCceEEEECCeeEEEEEeeEecCCCCcccEE
Q 033484 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKC 58 (118)
Q Consensus 24 ~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~v 58 (118)
+..+++|+.|.++|+.|.|.+ ..|.-+|.+.+
T Consensus 72 ~~~~~~gD~v~i~g~~y~V~~---v~PDg~G~~~L 103 (117)
T 1k0h_A 72 VRQLRRGDTLTIGEENFWVDR---VSPDDGGSCHL 103 (117)
T ss_dssp TTTCCSSCEEEETTTCEEBCC---CCSSSCCCTTC
T ss_pred cCCCCCCCEEEECCeEEEEee---eccCCCCeEEE
Confidence 556799999999999999987 46755576654
No 24
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=53.42 E-value=15 Score=25.76 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred eeeEEecccccCceEEE--------------ECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEe
Q 033484 18 KTFPQQAGTIRKNGYIV--------------IKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIV 75 (118)
Q Consensus 18 ~t~~i~~~~lkkG~~i~--------------i~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~ 75 (118)
..|.+-+..++.|+.|. +..-| ..|-.++ .+||++|+ +..++..| .|+..-.++
T Consensus 41 k~yIlAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~iP~Gt~IhNIE-~~pG~gg~laRsAGt~a~ii~k---e~~~~~vrL 116 (137)
T 1rl2_A 41 KRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIE-LKPGRGGQLVRAAGTSAQVLGK---EGKYVIVRL 116 (137)
T ss_dssp EEEEECCTTCCTTCEECBSTTCCSCTTCEEEGGGSCTTCEEESEE-SSTTSCEEESSSSSCCEEEEEE---ETTEEEEEC
T ss_pred EEEEEecccCccceEEEECCccccccCCEeehhhCCCCCEEEEEE-ccCCCCcEEEEeCCCeEEEEEE---cCCEEEEEC
Confidence 45555555555555554 43333 2233333 38898542 56677777 377777889
Q ss_pred cCCCcee
Q 033484 76 PSSHNCD 82 (118)
Q Consensus 76 ~s~~~ve 82 (118)
||++.-.
T Consensus 117 PSGe~r~ 123 (137)
T 1rl2_A 117 ASGEVRM 123 (137)
T ss_dssp TTSCEEE
T ss_pred CCCCeEE
Confidence 9987654
No 25
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=52.64 E-value=4.7 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.3
Q ss_pred cccCceEEEECCeeEEEEEeeEecC
Q 033484 26 TIRKNGYIVIKGRPCKVVEVSTSKT 50 (118)
Q Consensus 26 ~lkkG~~i~i~g~P~~Vve~~~~kp 50 (118)
.-+.|+.|.++|..|+++....+.|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcC
Confidence 3478999999999999987766644
No 26
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=51.81 E-value=21 Score=24.44 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=23.6
Q ss_pred eeeEEecccccCceEEEE-CC-----eeEEEEEeeEe
Q 033484 18 KTFPQQAGTIRKNGYIVI-KG-----RPCKVVEVSTS 48 (118)
Q Consensus 18 ~t~~i~~~~lkkG~~i~i-~g-----~P~~Vve~~~~ 48 (118)
....+.|++|++|+.|.. +| .|-+|++++..
T Consensus 83 ~~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 83 KLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred cEEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 347789999999998865 44 47778777664
No 27
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=50.82 E-value=31 Score=25.19 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=36.5
Q ss_pred eeeEEecccccCceEEEE--------------CCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEe
Q 033484 18 KTFPQQAGTIRKNGYIVI--------------KGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIV 75 (118)
Q Consensus 18 ~t~~i~~~~lkkG~~i~i--------------~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~ 75 (118)
..|.+-+..|+.|++|.- ...| ..|-.++. +||++|+ +.+++..+ .++..-..+
T Consensus 41 ~~yilAp~gl~~Gd~I~~g~~a~i~~GN~lpL~~iP~Gt~I~NIE~-~pG~gg~laRsAGt~a~ii~k---e~~~~~vrL 116 (178)
T 1giy_D 41 KRYIIAPKNLKVGMEIMSGPDADIKIGNALPLENIPVGTLVHNIEL-KPGRGGQLVRAAGTSAQVLGK---EGKYVIVRL 116 (178)
T ss_pred EEEEECccCCccccEEEECCCCccccCCCcccccCCCCCEEEeEec-cCCCCeEEEEeCCCeEEEEEe---cCCeEEEEC
Confidence 456666666666666654 2222 23333433 7898432 45555665 467777888
Q ss_pred cCCCceee
Q 033484 76 PSSHNCDV 83 (118)
Q Consensus 76 ~s~~~ve~ 83 (118)
+|++.-.+
T Consensus 117 PSGe~r~v 124 (178)
T 1giy_D 117 ASGEVRMI 124 (178)
T ss_pred CCCCEEEE
Confidence 88876543
No 28
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=47.87 E-value=62 Score=21.92 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=37.7
Q ss_pred EEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEE-eeeeEEEeccCCCe
Q 033484 43 VEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVT-RTDYQLIDISEDGF 101 (118)
Q Consensus 43 ve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve-~~~~qyly~d~d~~ 101 (118)
++++-.++| +...+.+.++|.-+-. ++.+|+|+.+.+....+ .-+--|-|.++..|
T Consensus 9 ~~v~~~~~g--~~v~~~ltv~N~s~~~-v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~F 65 (120)
T 3isy_A 9 LSIDAIQEP--EQIKFNMSLKNQSERA-IEFQFSTGQKFELVVYDSEHKERYRYSKEKMF 65 (120)
T ss_dssp EEEEEEECS--SCEEEEEEEEECSSSC-EEEEESSSCCEEEEEECTTCCEEEETTTTCCC
T ss_pred EEEeeccCC--CeEEEEEEEEcCCCCc-EEEEeCCCCEEEEEEECCCCCEEEEccccchh
Confidence 344444443 5678889999986655 77999999999988876 33444555666543
No 29
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=44.07 E-value=21 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=23.7
Q ss_pred EEecccccCceEEEECCeeEEEEEee
Q 033484 21 PQQAGTIRKNGYIVIKGRPCKVVEVS 46 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~ 46 (118)
...+.||..|..|.+-|+.+.|+++.
T Consensus 83 ~~~~~Dl~VG~~v~i~gR~f~I~dcD 108 (133)
T 2z14_A 83 FYTVYHFNVGTEVVFYGRTFKIYDCD 108 (133)
T ss_dssp BCCGGGCCTTCEEEETTEEEEEEEEC
T ss_pred ccCHHHcccCCEEEEecEEEEEEeCC
Confidence 36889999999999999999999965
No 30
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=40.34 E-value=78 Score=21.46 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=32.2
Q ss_pred EEecccccCceEEEE---CCee--EEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033484 21 PQQAGTIRKNGYIVI---KGRP--CKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i---~g~P--~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
.+++.+|+.|+.|+- +|++ ..|+.+-+..|.. -..+++++.. .| ...+....+.+-++
T Consensus 15 ~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~-~~~f~~I~t~---~g--~~L~lTp~H~i~v~ 77 (145)
T 1at0_A 15 RKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQ-MQNFVQLHTD---GG--AVLTVTPAHLVSVW 77 (145)
T ss_dssp EEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEE-EEEEEEEEET---TS--CEEEECTTCEEEEE
T ss_pred EeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCc-ceeEEEEEEC---CC--CEEEEeCCCEEEEe
Confidence 578899999998764 4654 5566555544422 1234444432 34 33445555555443
No 31
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=40.08 E-value=67 Score=21.47 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=26.3
Q ss_pred EEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 59 rik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
.+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 83 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVH 83 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEE
Confidence 35666666777777778888777777776666665555
No 32
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=37.52 E-value=64 Score=21.56 Aligned_cols=37 Identities=5% Similarity=0.059 Sum_probs=23.9
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 47 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 83 (125)
T 1p6p_A 47 FVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQ 83 (125)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEE
Confidence 5555666666777777777777766666655555554
No 33
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=37.51 E-value=40 Score=27.78 Aligned_cols=52 Identities=8% Similarity=-0.070 Sum_probs=36.5
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEE
Q 033484 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVT 87 (118)
Q Consensus 28 kkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve 87 (118)
..|+.+.+||.++-.+. .||+ .+|+++.|.-.-+.+...+..+.++.++-.+
T Consensus 181 ~~gd~~lvNG~~~p~~~----v~g~----~~RlRliNas~~~~~~l~i~dg~~~~vIa~D 232 (488)
T 3od3_A 181 WFGDTLLTNGAIYPQHA----APRG----WLRLRLLNGCNARSLNFATSDNRPLYVIASD 232 (488)
T ss_dssp CCCSEEEETTBSSCEEE----EEEE----EEEEEEEECCSSCCEEEEETTCCCEEEEEET
T ss_pred CCCCEEEEcCCcCccEe----cCCC----EEEEEEEccCCCceeeeeecCCCeEEEEEeC
Confidence 35899999998654443 2444 6899999988888787777656666554433
No 34
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=36.14 E-value=75 Score=21.24 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=24.9
Q ss_pred CcceeeEEecccc--cCceEEEECCeeEEEEEeeEecCCC
Q 033484 15 GASKTFPQQAGTI--RKNGYIVIKGRPCKVVEVSTSKTGK 52 (118)
Q Consensus 15 ~~~~t~~i~~~~l--kkG~~i~i~g~P~~Vve~~~~kpGK 52 (118)
|...|-.+=.+.- |+|+.+.++|+-|.|..+++.. ||
T Consensus 50 G~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vtr~~~~n-gk 88 (102)
T 2pp6_A 50 GNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFN-GK 88 (102)
T ss_dssp --CEEEEECCSSCCCCTTCEEEETTEEEEEEEEEEET-TE
T ss_pred CCceEEEEecCCcccCCCCEEEEcCcEEEEEEEEEEC-Cc
Confidence 3333444434444 5689999999999999998764 44
No 35
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=35.32 E-value=63 Score=25.15 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCCcceeeEEecc--------cccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccC
Q 033484 13 DAGASKTFPQQAG--------TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67 (118)
Q Consensus 13 ~~~~~~t~~i~~~--------~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~T 67 (118)
+.-.+.++.++.. -|.++..|.++|+.|.|..++...-| |...+.+.+++++-
T Consensus 34 Ng~~~LsF~i~~~~~n~~~~~~l~~e~~I~~~~q~YvI~~~~~~~~g--~~~~~~V~A~hi~~ 94 (342)
T 3gs9_A 34 NEMWSIEFXVAQTPKNAHCYSFLDYESSVYFRGQEFVVKQLSHDAVG--KTLSKDIRAPHIYY 94 (342)
T ss_dssp TTEEEEEEEEEEC-----CCCCSSTTCEEEETTEEEECCEECCBC-----CEEEEEEEEBGGG
T ss_pred CCcEEEEEEEecCccchHHHHhhCcCCEEEECCcEEEEEEeEeecCC--CEEEEEEEEEEeee
Confidence 3344455555554 48999999999999999988776544 34677899998864
No 36
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=34.83 E-value=84 Score=22.54 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=27.0
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEE
Q 033484 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLED 73 (118)
Q Consensus 28 kkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~ 73 (118)
..|..+++++.-|++++.- |+++.+.| .++++..+|+.+-.
T Consensus 19 ~~g~~~~i~~~~y~~~~~l----g~G~~g~V-~~~~~~~~~~~vav 59 (317)
T 2buj_A 19 FQGHMVIIDNKHYLFIQKL----GEGGFSYV-DLVEGLHDGHFYAL 59 (317)
T ss_dssp EEEEEEEETTEEEEEEEEE----EC--CEEE-EEEEETTTCCEEEE
T ss_pred ecccEEEECCeEEEEEEEe----cCCCCeEE-EEEEecCCCcEEEE
Confidence 5688889999999998753 44222333 56777778875543
No 37
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=34.63 E-value=82 Score=21.19 Aligned_cols=37 Identities=8% Similarity=-0.039 Sum_probs=21.8
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 84 (132)
T 1ifc_A 48 FTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWT 84 (132)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 4555556666666667666666665555554444443
No 38
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.90 E-value=45 Score=25.47 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=36.5
Q ss_pred ceeeEEecccccCceEEEE--------------CCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEE
Q 033484 17 SKTFPQQAGTIRKNGYIVI--------------KGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDI 74 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i--------------~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t 74 (118)
+..|.+-+..|+.|++|.. ...| ..|-.++ .+||+.|+ +..++..++ +...-..
T Consensus 67 ek~YIlApeGl~vGd~I~sG~~a~i~~GN~LPL~~iP~GT~I~NIE-~~pG~gg~laRsAGt~A~ii~k~---~~~~~vr 142 (239)
T 3j21_B 67 IEKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIE-GIPGDGGKYVRAGGTYALVVSRE---PDKVIVQ 142 (239)
T ss_dssp CEEEECCBTTCCTTCEEEESSSSCSSTTCEEETTTSCTTCEEESCC-SSSSSCCCSCCSTTCCEEEEEEC---SSCEEEE
T ss_pred CEEEEEccccCccccEEEECCCCCCCcCCEeeccccCCCCEEEeEE-ecCCCceeEEEecCCeEEEEEec---CCEEEEE
Confidence 4455555555555555544 3333 2333343 37888542 566777776 6667778
Q ss_pred ecCCCcee
Q 033484 75 VPSSHNCD 82 (118)
Q Consensus 75 ~~s~~~ve 82 (118)
++|++.-.
T Consensus 143 LPSGe~r~ 150 (239)
T 3j21_B 143 LPSGELKA 150 (239)
T ss_dssp CTTSCEEE
T ss_pred cCCCCEEE
Confidence 89988654
No 39
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=32.81 E-value=55 Score=20.38 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=20.6
Q ss_pred ccccCceEEEECCeeEEEEEeeEecCCC
Q 033484 25 GTIRKNGYIVIKGRPCKVVEVSTSKTGK 52 (118)
Q Consensus 25 ~~lkkG~~i~i~g~P~~Vve~~~~kpGK 52 (118)
.+|.+...|.++|+.|.+..-+...+|.
T Consensus 25 ~~i~~~G~V~i~Ge~W~A~s~~~i~~G~ 52 (80)
T 2exd_A 25 KIAEDHYLVEVEGDKWIAYSDEKLSLGD 52 (80)
T ss_dssp ECCTTCEEEEETTEEEEECCSSCCCTTC
T ss_pred EecCCCEEEEECCEEEEEEECCccCCCC
Confidence 3556667899999999987555556665
No 40
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=32.74 E-value=42 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.9
Q ss_pred ccccCceEEEECCeeEEEE
Q 033484 25 GTIRKNGYIVIKGRPCKVV 43 (118)
Q Consensus 25 ~~lkkG~~i~i~g~P~~Vv 43 (118)
..++.|+.|.++|+|+.|+
T Consensus 60 ~~v~~gd~I~v~~~~~~~~ 78 (79)
T 1p9k_A 60 CKIVAGQTVSFAGHSVQVV 78 (79)
T ss_dssp CCCCSSEEEEETTEEEEEE
T ss_pred CCCCCCCEEEECCEEEEEe
Confidence 3578899999999998775
No 41
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=31.83 E-value=1.1e+02 Score=20.64 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=24.7
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.+|...++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 85 (132)
T 1mdc_A 49 YSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYT 85 (132)
T ss_dssp EEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEE
T ss_pred EEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEE
Confidence 5566666667777777777777776666665555544
No 42
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=31.72 E-value=59 Score=25.35 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=30.9
Q ss_pred cccCceEEEECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEecCCCcee
Q 033484 26 TIRKNGYIVIKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 26 ~lkkG~~i~i~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~~s~~~ve 82 (118)
+|+.|+++-+...| ..|-.++ .+||++|+ +.+++..++ +...-..++|++.-.
T Consensus 124 ~i~~GN~lPL~~IP~GT~IhNIE-~~pG~Gg~laRsAGt~A~ii~k~---~~~~~vrLPSGe~r~ 184 (276)
T 3v2d_D 124 PIQVGNALPLRFIPVGTVVHAVE-LEPKKGAKLARAAGTSAQIQGRE---GDYVILRLPSGELRK 184 (276)
T ss_dssp CSSTTCEEEGGGSCTTCEEESEE-SSTTSCEEESCSTTCCEEEEEEE---TTEEEEECTTSCEEE
T ss_pred CCCCCCeehhhhCCCCCEEEEEE-ecCCCCceEEEeCCCeEEEEEec---CCEEEEECCCCCeEE
Confidence 34444444444333 2333333 37998542 566777776 677778899987643
No 43
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=31.35 E-value=1e+02 Score=20.78 Aligned_cols=36 Identities=6% Similarity=-0.175 Sum_probs=21.3
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
+.++...+.+..+.+|+-++.++...++-+.++-+.
T Consensus 49 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~v 84 (133)
T 3ppt_A 49 WSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTC 84 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEE
T ss_pred EEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEE
Confidence 455555566666667777766666555554444444
No 44
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=30.72 E-value=84 Score=22.01 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=14.6
Q ss_pred eEEecccccCceEEEEC
Q 033484 20 FPQQAGTIRKNGYIVIK 36 (118)
Q Consensus 20 ~~i~~~~lkkG~~i~i~ 36 (118)
..+.|++||+|+.|.+-
T Consensus 104 ~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 104 IEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EEEEGGGCCTTCEEEEC
T ss_pred EEEEHHHCCCCCEEEEc
Confidence 36899999999999873
No 45
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=30.67 E-value=1.1e+02 Score=20.64 Aligned_cols=37 Identities=5% Similarity=-0.190 Sum_probs=23.1
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 87 (134)
T 1o8v_A 51 YKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLIT 87 (134)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 5555666666777777777777666665555554444
No 46
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=30.57 E-value=1e+02 Score=20.72 Aligned_cols=37 Identities=5% Similarity=-0.188 Sum_probs=21.1
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 52 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 88 (135)
T 1b56_A 52 LTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCN 88 (135)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEE
Confidence 4555555566666666666666655555554444443
No 47
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=30.10 E-value=97 Score=21.71 Aligned_cols=37 Identities=3% Similarity=-0.212 Sum_probs=23.3
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.+|+...+-+.++-+..
T Consensus 72 ~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt 108 (154)
T 4a60_A 72 MTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTIT 108 (154)
T ss_dssp EEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEE
Confidence 5556666667777777777777766555555554443
No 48
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=30.07 E-value=86 Score=19.58 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=21.7
Q ss_pred ecccccCceEEEE-----CCeeEEEEEeeEecCCC
Q 033484 23 QAGTIRKNGYIVI-----KGRPCKVVEVSTSKTGK 52 (118)
Q Consensus 23 ~~~~lkkG~~i~i-----~g~P~~Vve~~~~kpGK 52 (118)
....|+.|+.|.+ +|.-|.|++++...|.+
T Consensus 44 ~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~~~~~ 78 (82)
T 2l55_A 44 LPQGLKAGDRVAFSFRLDPHGMATLVTVAPQVQTA 78 (82)
T ss_dssp CCSSCSTTCEEEEEEEEETTTEEEEEEEEECCSSC
T ss_pred HhhcCCCCCEEEEEEEECCCCeEEEEEEEecCCCC
Confidence 3678999998875 33258888888776655
No 49
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=30.05 E-value=76 Score=21.19 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=23.7
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 48 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t 84 (126)
T 2qo4_A 48 FTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVK 84 (126)
T ss_dssp EEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEE
Confidence 4555666666777777777777766666555555554
No 50
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=29.18 E-value=1.3e+02 Score=20.21 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=25.4
Q ss_pred EEEEEccCCcEEEEEecCCCceeecE--EEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~--ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.+++.. ++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt 87 (134)
T 1ggl_A 49 MTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVT 87 (134)
T ss_dssp EEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEE
T ss_pred EEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEE
Confidence 55666666777777788888887776 66666555554
No 51
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=28.88 E-value=88 Score=21.74 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=31.3
Q ss_pred EEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec-cC
Q 033484 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI-SE 98 (118)
Q Consensus 59 rik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~-d~ 98 (118)
.+.++...+.+..+.+|+-++.+++..++-+.++-++. +|
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg 109 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEG 109 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEET
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeC
Confidence 46777888888899999999999888887777776665 44
No 52
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=27.54 E-value=1e+02 Score=21.04 Aligned_cols=36 Identities=6% Similarity=-0.047 Sum_probs=21.7
Q ss_pred EEEEEccCCcEEEEEecCCCceee--cEEEeeeeEEEe
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLID 95 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~--~~ve~~~~qyly 95 (118)
+.++...+.+..+.+|+-++.+++ -.++-+.++-++
T Consensus 53 ~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~v 90 (141)
T 2rcq_A 53 FKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALV 90 (141)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEE
T ss_pred EEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEE
Confidence 455566666677777777777776 555544444433
No 53
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=27.43 E-value=1.4e+02 Score=19.87 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=25.4
Q ss_pred EEEEEc-cCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl-~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++.. .+.+..+.+|+-++.++.-.++-+.++-++.
T Consensus 47 ~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 84 (127)
T 1eal_A 47 FTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQ 84 (127)
T ss_dssp EEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCE
T ss_pred EEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 555566 6666777788888887777777666665555
No 54
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=27.09 E-value=33 Score=22.05 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=24.3
Q ss_pred CCcccEEEEEEEE-ccCCcEEEEEecCCCcee
Q 033484 52 KHGHAKCHFVGID-IFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 52 KhG~A~vrik~kn-l~TG~~~e~t~~s~~~ve 82 (118)
.||.+.|++.++. ...++..|.+++.+++|.
T Consensus 9 ~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~ 40 (97)
T 2kj6_A 9 SHGDDSVHLHITHANLKSFSADARFSPQMSVE 40 (97)
T ss_dssp CCCCCCEEEEEEETTSSCCCEEEEECTTCCHH
T ss_pred cCCCceEEEEEEECCCCceEEEEEeCCCChHH
Confidence 3588899988886 444568999999988876
No 55
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=26.54 E-value=1.3e+02 Score=19.11 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=31.5
Q ss_pred EecccccCceEEEECCeeEEEEEeeEec--CCCCc--ccEEEEEEEEccCCcEEEEEec
Q 033484 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSK--TGKHG--HAKCHFVGIDIFNGKKLEDIVP 76 (118)
Q Consensus 22 i~~~~lkkG~~i~i~g~P~~Vve~~~~k--pGKhG--~A~vrik~knl~TG~~~e~t~~ 76 (118)
.+.++|++|..+.+ .++|.+....+ ..|.| ..+..+.+.| .||.+.=.-|.
T Consensus 8 ~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~ 62 (115)
T 2k50_A 8 DTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWT 62 (115)
T ss_dssp CCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEET
T ss_pred EEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeC
Confidence 46889999998755 56676662222 12225 4677788888 68854433444
No 56
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=26.49 E-value=1.4e+02 Score=20.01 Aligned_cols=37 Identities=5% Similarity=-0.045 Sum_probs=24.8
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t 85 (131)
T 2a0a_A 49 YIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQ 85 (131)
T ss_dssp EEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 5566666677777777777777776666555555444
No 57
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=26.41 E-value=1.2e+02 Score=21.19 Aligned_cols=37 Identities=8% Similarity=-0.208 Sum_probs=24.0
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.+|+-..+-+.++-+..
T Consensus 70 ~tikt~st~kt~~~~F~lGeEfee~t~dGrk~Ks~vt 106 (152)
T 3q6l_A 70 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTIT 106 (152)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEEE
Confidence 5566666667777777777777766656555554443
No 58
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=26.27 E-value=1.5e+02 Score=24.17 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=33.7
Q ss_pred cCceEEEECCeeE----------EEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033484 28 RKNGYIVIKGRPC----------KVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 28 kkG~~i~i~g~P~----------~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
..++.+.+||.+. -.+ ..+||+ .+|+++.|.-.-..+...+. ++++.++
T Consensus 189 ~~~d~~liNG~~~~~~~~~~~~~~~~---~v~~G~----~~RlRliNa~~~~~~~~~i~-gh~~~vi 247 (521)
T 1v10_A 189 PAPDTTLINGLGRNSANPSAGQLAVV---SVQSGK----RYRFRIVSTSCFPNYAFSID-GHRMTVI 247 (521)
T ss_dssp SCCSEEEETTBCCCSSCGGGSCCCEE---EECTTC----EEEEEEEECCSSCCEEEEET-TCCEEEE
T ss_pred CCCCEEEECCcccCCCCCCCCCceEE---EECCCC----EEEEEEEecCCcccEEEEEC-CCeEEEE
Confidence 4588999999754 334 347888 78999999887776666653 4455443
No 59
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=25.81 E-value=1.6e+02 Score=23.90 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=32.8
Q ss_pred cCceEEEECCeeE---------EEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceee
Q 033484 28 RKNGYIVIKGRPC---------KVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83 (118)
Q Consensus 28 kkG~~i~i~g~P~---------~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~ 83 (118)
..++.+++||... -.+ ..+||+ .+|+++.|.-.-..+...+. ++++.+
T Consensus 163 ~~~d~~liNG~~~~~~~~~~~~~~~---~v~~g~----~~RlRliN~~~~~~~~~~i~-gh~~~v 219 (503)
T 1hfu_A 163 AQPDATLINGKGRYVGGPAAELSIV---NVEQGK----KYRMRLISLSCDPNWQFSID-GHELTI 219 (503)
T ss_dssp -CCSEEEETTBCCBTTCCCCCCCEE---EECTTC----EEEEEEEECCSSCCEEEEET-TCCEEE
T ss_pred CCCCEEEECcccccCCCCCCcceEE---EEcCCC----EEEEEEEecCCcccEEEEEc-CceEEE
Confidence 3588999999754 334 347887 78999999887776666663 444444
No 60
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=25.75 E-value=1.2e+02 Score=20.35 Aligned_cols=36 Identities=8% Similarity=-0.061 Sum_probs=19.0
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
+.++..-+.+..+.+|+-++.++...++-+.++-++
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~ 86 (135)
T 1vyf_A 51 MTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVV 86 (135)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEE
T ss_pred EEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEE
Confidence 444455555556666666666655555544444333
No 61
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=25.75 E-value=61 Score=24.75 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=35.5
Q ss_pred eeeEEecccccCceEEE--------------ECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEe
Q 033484 18 KTFPQQAGTIRKNGYIV--------------IKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIV 75 (118)
Q Consensus 18 ~t~~i~~~~lkkG~~i~--------------i~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~ 75 (118)
..|.+-+..|+.|++|. +...| ..|-.++. +||+.|+ +.+++..+ .++..-..+
T Consensus 66 k~yIlAp~gl~vGd~I~sg~~a~i~~GN~lPL~~IP~GT~IhNIE~-~pG~Gg~laRsAGt~A~ii~k---e~~~~~vrL 141 (240)
T 1vq8_A 66 RRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVES-SPGDGGKFARASGVNAQLLTH---DRNVAVVKL 141 (240)
T ss_dssp EEEECCBTTCBTTCEEEBSTTCCSCTTCEEEGGGSCTTCEEESBCS-STTSCCCBSCSTTCCEEEEEC---CSSCEEEEC
T ss_pred EEEEEecCCCccCeEEEECCCccccccccccccCCCCCCEEEeEec-cCCCCceEEEeCCCeEEEEEe---cCCEEEEEC
Confidence 44555555555555554 33333 23333433 7888542 56667776 466777888
Q ss_pred cCCCcee
Q 033484 76 PSSHNCD 82 (118)
Q Consensus 76 ~s~~~ve 82 (118)
+|++.-.
T Consensus 142 PSGe~r~ 148 (240)
T 1vq8_A 142 PSGEMKR 148 (240)
T ss_dssp TTSCEEE
T ss_pred CCCCEEE
Confidence 8887654
No 62
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular chaperone, heart fatty acid binding type 2 diabetes, atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB: 1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Probab=25.49 E-value=1.1e+02 Score=21.43 Aligned_cols=37 Identities=11% Similarity=-0.142 Sum_probs=22.9
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.+|+-..+-+.++-+..
T Consensus 75 ~tikt~St~kt~~~~F~lGeEfee~t~DGrk~Ks~vt 111 (158)
T 3rsw_A 75 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVT 111 (158)
T ss_dssp EEEEEECSSCEECCEEETTBCEEEECSSCCEEEEEEE
T ss_pred EEEEEEccCceEEEEEEcCCcEEeecCCCCEEEEEEE
Confidence 4455666666677777777777766555555554443
No 63
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=25.28 E-value=1.3e+02 Score=20.49 Aligned_cols=36 Identities=8% Similarity=-0.208 Sum_probs=19.8
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
+.++...+.+..+.+|+-++.+|....+-+.++-+.
T Consensus 57 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~v 92 (139)
T 3p6d_A 57 ITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTI 92 (139)
T ss_dssp EEEEEECSSCCEEEEECTTCCEEEECTTCCEEEEEE
T ss_pred EEEEEEeccccEEEEEEcCCcEEeecCCCCEEEEEE
Confidence 444555555566666666666665555544444443
No 64
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=25.26 E-value=89 Score=20.95 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=17.3
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~ 84 (131)
T 1fdq_A 49 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVV 84 (131)
T ss_dssp EEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEE
T ss_pred EEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEE
Confidence 334444444555555555555555444444443333
No 65
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=25.09 E-value=1.4e+02 Score=20.13 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=24.4
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-+..
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt 87 (132)
T 3vg7_A 51 FKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQ 87 (132)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEECTTSCEEEEECE
T ss_pred EEEEEEEcCceEEEEEECCCcEEeECCCCCEEEEEEE
Confidence 4555566666677777777777776666666665554
No 66
>3rby_A Uncharacterized protein YLR301W; beta-barrel, unknown function; HET: PGE; 2.30A {Saccharomyces cerevisiae}
Probab=25.03 E-value=55 Score=25.04 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.0
Q ss_pred eeEEecccccCceEEEECCeeEEEEEee
Q 033484 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVS 46 (118)
Q Consensus 19 t~~i~~~~lkkG~~i~i~g~P~~Vve~~ 46 (118)
-+|.....+++|+.|.++|..|+|+|..
T Consensus 217 ~fP~~~~~l~~g~~v~v~g~~W~viE~~ 244 (245)
T 3rby_A 217 KIPQSYENLKKGSTVTSNGLNWEVIEYH 244 (245)
T ss_dssp GSCCCCTTCCTTCEEEETTEEEEEEEEE
T ss_pred hCCccccccccCCEEEECCeEEEEEEec
Confidence 3666677799999999999999999863
No 67
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=24.84 E-value=1.5e+02 Score=25.04 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCC
Q 033484 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (118)
Q Consensus 28 kkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~ 78 (118)
..|+.+++||.+.-.+++ +|| .+|+++.|.-.-+.+...+...
T Consensus 252 ~~gd~~lVNG~~~p~~~V---~~g-----~yRlRliNas~~r~~~l~i~~h 294 (612)
T 2g23_A 252 FFGPYTTVNGRIWPYADV---DDG-----WYRLRLVNASNARIYNLVLIDE 294 (612)
T ss_dssp CCCSEEEETTEESCEEEE---ESS-----EEEEEEEECCSSCCEEEEEECT
T ss_pred CcCCEEEECCccCCeEEe---cCC-----eEEEEEEecCCCeEEEEEEcCC
Confidence 468999999998766654 454 4899999999988888888765
No 68
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=23.67 E-value=1.4e+02 Score=18.48 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=14.9
Q ss_pred cccccCceEEEEC---CeeEEE
Q 033484 24 AGTIRKNGYIVIK---GRPCKV 42 (118)
Q Consensus 24 ~~~lkkG~~i~i~---g~P~~V 42 (118)
.-+|++|++|.++ ++|..|
T Consensus 33 ll~L~~GdVi~Ld~~~~e~v~i 54 (84)
T 1o9y_A 33 LRRLDAGTILEVTGISPGHATL 54 (84)
T ss_dssp HHTCCTTCEEEECSSCTTEEEE
T ss_pred HhcCCCCCEEEeCCCCCCCEEE
Confidence 4578999999998 567655
No 69
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=23.38 E-value=1.7e+02 Score=19.55 Aligned_cols=37 Identities=11% Similarity=-0.109 Sum_probs=22.6
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++...++-+.++-++.
T Consensus 51 ~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t 87 (133)
T 1ftp_A 51 FKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTIT 87 (133)
T ss_dssp EEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEE
T ss_pred EEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEE
Confidence 5555666666667777777777666665555554444
No 70
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=23.16 E-value=1.3e+02 Score=20.21 Aligned_cols=37 Identities=0% Similarity=-0.163 Sum_probs=22.4
Q ss_pred EEEEEccCCcEEEEEecCCCceee--cEEEeeeeEEEec
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~--~~ve~~~~qyly~ 96 (118)
+.++...+.+..+.+|+-++.++. -.++-+.++-++.
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt 87 (134)
T 1crb_A 49 MIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVS 87 (134)
T ss_dssp EEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEE
T ss_pred EEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEE
Confidence 455566666667777777777776 5555554444433
No 71
>2lba_A BABP protein; ileal bIle acid binding protein, lipid binding protein; HET: CHO; NMR {Gallus gallus}
Probab=23.05 E-value=1.1e+02 Score=20.73 Aligned_cols=37 Identities=8% Similarity=0.111 Sum_probs=22.3
Q ss_pred EEEEEc-cCCcEEEEEecCCCceeecEEEeeeeEEEec
Q 033484 60 FVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (118)
Q Consensus 60 ik~knl-~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~ 96 (118)
+.++.. .+.+..+.+|+-++.++.-.++-+.++-++.
T Consensus 52 ~tikt~~s~~kt~~~~F~lGeEfee~t~dgrk~ks~vt 89 (136)
T 2lba_A 52 FTWTQHFPGGRTTTNSFTIDKEADMETMGGRKFKATVK 89 (136)
T ss_dssp EEEEEECTTSCCEEEEEETTEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEeCCCceEEEEEeCCCcEEEECCCCCEeeEEEE
Confidence 445555 5556666677777777666666555554444
No 72
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=22.57 E-value=86 Score=24.36 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=32.6
Q ss_pred cccCceEEEECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEecCCCcee
Q 033484 26 TIRKNGYIVIKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 26 ~lkkG~~i~i~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~~s~~~ve 82 (118)
+|+.|+++-+...| ..|-.++ .+||++|+ +.+++..+ .+...-..++|++.-.
T Consensus 122 ~i~~GN~lPL~~IP~GT~IhNIE-~~pG~Gg~laRsAGt~A~ii~k---~~~~~~vrLPSGe~r~ 182 (271)
T 3r8s_C 122 AIKPGNTLPMRNIPVGSTVHNVE-MKPGKGGQLARSAGTYVQIVAR---DGAYVTLRLRSGEMRK 182 (271)
T ss_dssp CSSTTCEEEGGGSCTTCEEESCC-SSTTTCCCSCCSTTCCEEEEEC---STTEEEEECTTSCEEE
T ss_pred CCCcCcEeehhhCCCCCEEEEEE-ecCCCCceEEEeCCCeEEEEEe---cCCEEEEECCCCCeEE
Confidence 45566666665554 2333444 37888542 45566665 5777778899988654
No 73
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=22.56 E-value=87 Score=20.30 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=22.6
Q ss_pred cccEEEEEEEEccCCcEEEEEecCCCcee
Q 033484 54 GHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 54 G~A~vrik~knl~TG~~~e~t~~s~~~ve 82 (118)
+.+.+++.+|++ +|+++...+.++++|.
T Consensus 18 ~~~mIqI~Vk~~-~Gkk~~v~v~p~DTI~ 45 (93)
T 3plu_A 18 GSHMIEVVVNDR-LGKKVRVKCLGEDSVG 45 (93)
T ss_dssp --CEEEEEEECT-TSCEEEEEEETTSBHH
T ss_pred CCceEEEEEECC-CCCEEEEEECCcCHHH
Confidence 568888888885 9999999999988876
No 74
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=22.53 E-value=1.2e+02 Score=19.19 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.0
Q ss_pred cccccCceEEEEC---CeeEEE
Q 033484 24 AGTIRKNGYIVIK---GRPCKV 42 (118)
Q Consensus 24 ~~~lkkG~~i~i~---g~P~~V 42 (118)
.-+|++|++|.++ ++|..|
T Consensus 37 ll~L~~GdVI~Ld~~~~~~v~v 58 (96)
T 1o6a_A 37 VLEMIHGSIIELDKLTGEPVDI 58 (96)
T ss_dssp HHHCCTTCEEEEEEETTCCEEE
T ss_pred HhCCCCCCEEEeCCCCCCcEEE
Confidence 4578999999998 567666
No 75
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=22.52 E-value=1.3e+02 Score=20.77 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=9.0
Q ss_pred ccCceEEEECCeeE
Q 033484 27 IRKNGYIVIKGRPC 40 (118)
Q Consensus 27 lkkG~~i~i~g~P~ 40 (118)
|+||+.|.++|.+-
T Consensus 74 l~KG~~V~VeG~L~ 87 (158)
T 3tqy_A 74 LRKGSKIYIEGSLR 87 (158)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred cCCCCEEEEEEEEE
Confidence 66666666666643
No 76
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=22.51 E-value=1.4e+02 Score=23.81 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCcee
Q 033484 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 28 kkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve 82 (118)
..|+.+.+||.+.-.+++ +|| .+|+++.|.-.-..+...+.-+.++.
T Consensus 180 ~~~d~~liNG~~~p~~~v---~~g-----~~RlRliNa~~~~~~~~~i~dg~~~~ 226 (451)
T 2uxt_A 180 FVGDTLLVNGVQSPYVEV---SRG-----WVRLRLLNASNSRRYQLQMNDGRPLH 226 (451)
T ss_dssp CCCSEEEETTEESCEEEE---CSS-----EEEEEEEECCSSCCEEEEETTSCCEE
T ss_pred CcCCEEEECCcccceEEe---cCC-----EEEEEEEccCCceeEEEEECCCCeEE
Confidence 358899999998766543 443 58999999988777766664344444
No 77
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.41 E-value=86 Score=19.44 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=21.9
Q ss_pred cccEEEEEEE--EccCCcEEEEEecCCCcee
Q 033484 54 GHAKCHFVGI--DIFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 54 G~A~vrik~k--nl~TG~~~e~t~~s~~~ve 82 (118)
++..+++.++ +..+|+..|.+++.+..|.
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~ 36 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQ 36 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHH
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHH
Confidence 4556777666 5689999999998876664
No 78
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=22.34 E-value=1.5e+02 Score=24.37 Aligned_cols=48 Identities=6% Similarity=-0.065 Sum_probs=33.1
Q ss_pred CceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033484 29 KNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 29 kG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
.++.+++||...-+++ .+||| .+|+++.|.-.-..+...+. ++++.++
T Consensus 166 ~~d~~liNG~~~~~~~---v~~g~----~~RlRliNa~~~~~~~~~i~-gh~~~vi 213 (534)
T 1zpu_A 166 IPQNLIVNNTMNLTWE---VQPDT----TYLLRIVNVGGFVSQYFWIE-DHEMTVV 213 (534)
T ss_dssp CCSEEEETTBSSCEEE---CCSSC----EEEEEEEECCSSCCEEEEET-TBCEEEE
T ss_pred CCceEEECCCCceEEE---EECCC----EEEEEEEeccCCceEEEEEc-CCeeEEE
Confidence 4788999998765443 47888 68999999887766655553 3444443
No 79
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=21.71 E-value=1.6e+02 Score=19.62 Aligned_cols=33 Identities=6% Similarity=-0.079 Sum_probs=18.1
Q ss_pred EEEEEccCCcEEEEEecCCCceeecE--EEeeeeE
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQ 92 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~--ve~~~~q 92 (118)
+.++...+.+..+.+|+-++.++.-. ++-+.++
T Consensus 49 ~~ikt~s~~k~~~~~F~lGeefee~t~~~dgrk~k 83 (133)
T 1lpj_A 49 FTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCK 83 (133)
T ss_dssp EEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEE
T ss_pred EEEEEEeCCceeEEEeeCCCceEEEccCCCCCEEE
Confidence 44555555556666666666666544 4444433
No 80
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=21.71 E-value=1.3e+02 Score=19.90 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=20.8
Q ss_pred eeEEecccccCceEE--EECCeeEEEEEe
Q 033484 19 TFPQQAGTIRKNGYI--VIKGRPCKVVEV 45 (118)
Q Consensus 19 t~~i~~~~lkkG~~i--~i~g~P~~Vve~ 45 (118)
+..+.+++|.+|..+ .+.|.|..|+..
T Consensus 6 ~~~v~~s~l~~G~~~~v~~~g~pv~v~r~ 34 (129)
T 1rie_A 6 KIEIKLSDIPEGKNMAFKWRGKPLFVRHR 34 (129)
T ss_dssp SEEEEGGGSCTTCEEEEEETTEEEEEEEC
T ss_pred ceEeeHHHCCCCCEEEEEECCeEEEEEEC
Confidence 456699999999854 458999888753
No 81
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=21.29 E-value=67 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.2
Q ss_pred cccCceEEEECCeeEEEEEe
Q 033484 26 TIRKNGYIVIKGRPCKVVEV 45 (118)
Q Consensus 26 ~lkkG~~i~i~g~P~~Vve~ 45 (118)
.+++|+.+.+.+.|+.|+++
T Consensus 103 ~~~~G~~~~~~~~~~~V~~v 122 (151)
T 1ix5_A 103 EPEEGMVILAEGIPATITEV 122 (151)
T ss_dssp CCCTTEEEESSSCEEEEEEE
T ss_pred cccccCEEEECCeEEEEEEE
Confidence 57889999999999998774
No 82
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=21.12 E-value=1e+02 Score=23.82 Aligned_cols=64 Identities=22% Similarity=0.263 Sum_probs=36.4
Q ss_pred ceeeEEecccccCceEEEE--------------CCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEE
Q 033484 17 SKTFPQQAGTIRKNGYIVI--------------KGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDI 74 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i--------------~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t 74 (118)
...|.+-+..|+.|++|.. ...| ..|-.++ .+||+.|+ +..++..++- .++..-..
T Consensus 73 ~k~YIlApeGl~vGd~I~sg~~a~i~~GN~LPL~~IP~GT~IhNIE-~~pG~Gg~laRsAGt~A~ii~k~~-e~~~~~vr 150 (264)
T 4a17_A 73 NKEHFIAAEGQYSGQYVYCGLKAQIAVGNVLPINRIPEGTVVCNVE-EKVGDRGTFSRASGCYATIIGHSE-DGDKTRIR 150 (264)
T ss_dssp EEEEEECBTTCBTTCEEEEESSCCCCTTCEEEGGGSCTTCEEESBC-SSTTCSCCBCCSTTCCEEEEEECS-SSCEEEEE
T ss_pred eEEEEEeecCCccccEEEECCCCCCCcCCcccHhhCCCCCEEEEEE-ecCCCcceEEEeCCCeEEEEEEcc-CCCEEEEE
Confidence 3456666666666666654 2222 2333344 37888542 4556666653 34556677
Q ss_pred ecCCCcee
Q 033484 75 VPSSHNCD 82 (118)
Q Consensus 75 ~~s~~~ve 82 (118)
++|++.-.
T Consensus 151 LPSGe~r~ 158 (264)
T 4a17_A 151 LPSGARKT 158 (264)
T ss_dssp CTTSCEEE
T ss_pred CCCCCEEE
Confidence 88887644
No 83
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=21.05 E-value=1.7e+02 Score=23.72 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.9
Q ss_pred cCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033484 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 28 kkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
..|+.+++||.+.-.+++ +|| ++|+++.|.-.-..+...+..+.++.++
T Consensus 228 ~~~d~~liNG~~~p~~~v---~~~-----~~RlRliNa~~~~~~~~~i~~~~~~~vi 276 (513)
T 2wsd_A 228 FCGETILVNGKVWPYLEV---EPR-----KYRFRVINASNTRTYNLSLDNGGDFIQI 276 (513)
T ss_dssp CCCSEEEETTEESCEEEC---CSS-----EEEEEEEECCSSCCEEEEETTCCCEEEE
T ss_pred cccceEEECCcccceEEe---cCC-----EEEEEEEccCCcceEEEEECCCCeEEEE
Confidence 358999999998766543 332 5899999988777666666554355443
No 84
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=21.02 E-value=88 Score=20.82 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=13.9
Q ss_pred cccCceEEEECCe--eEEEEEe
Q 033484 26 TIRKNGYIVIKGR--PCKVVEV 45 (118)
Q Consensus 26 ~lkkG~~i~i~g~--P~~Vve~ 45 (118)
.|++|+.|.++|+ .++|+++
T Consensus 33 ~ikvGD~I~f~~~~l~~~V~~v 54 (109)
T 2z0t_A 33 QIKPGDIIIFEGGKLKVKVKGI 54 (109)
T ss_dssp GCCTTCEEEEGGGTEEEEEEEE
T ss_pred cCCCCCEEEECCCEEEEEEEEE
Confidence 4689999999764 3444544
No 85
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=20.93 E-value=1.1e+02 Score=23.70 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=29.8
Q ss_pred ccCceEEEECCee--EEEEEeeEecCCCCcc------cEEEEEEEEccCCcEEEEEecCCCcee
Q 033484 27 IRKNGYIVIKGRP--CKVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (118)
Q Consensus 27 lkkG~~i~i~g~P--~~Vve~~~~kpGKhG~------A~vrik~knl~TG~~~e~t~~s~~~ve 82 (118)
|+.|+++-+...| ..|-.++ .+||+.|+ +.+++..++-. +...-..++|++.-.
T Consensus 96 i~~GN~LPL~~IP~GT~IhNIE-~~pG~Gg~laRsAGt~A~ii~k~~e-~~~~~vrLPSGe~r~ 157 (261)
T 3iz5_B 96 LSIGNVLPIRSVPEGAVVCNVE-HHVGDRGVFARASGDYAIVISHNPD-NGTSRIKLPSGAKKI 157 (261)
T ss_dssp SCTTCEEEGGGSCTTEEEESBC-SSTTSCCCBSCSTTCCEEEEECSSC-SSCEEEECTTSCEEE
T ss_pred CCCCCEeccccCCCCCEEEEEE-ecCCCcceEEEecCCeEEEEEeccC-CCEEEEECCCCCEEE
Confidence 4444444443333 3334444 37888542 45566666543 455567888887654
No 86
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=20.83 E-value=1.5e+02 Score=21.22 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=31.0
Q ss_pred eEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecC
Q 033484 20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (118)
Q Consensus 20 ~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s 77 (118)
+.++.-.+++|+.|... +....+++ | .+.+.|+-+|+.+.+++.+
T Consensus 50 ~~~~~~~v~~GD~i~~t--------V~~~s~~~-g----~~tleN~ttg~~~t~t~t~ 94 (173)
T 1y43_B 50 YDFSDITISEGDSIKVT--------VEATSKSS-G----SATVENLTTGQSVTHTFSG 94 (173)
T ss_dssp EEETTCCCCTTCEEEEE--------EEEEETTE-E----EEEEEETTTTEEEEEEECS
T ss_pred cccccceeCCCCEEEEE--------EEEcCCCc-E----EEEEEECCCCEEEEEEEcC
Confidence 34444557888887764 22333333 3 6889999999999999976
No 87
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=20.65 E-value=1e+02 Score=20.36 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=23.6
Q ss_pred EecccccCceEEEECCeeEEEEEeeEecCCCCcccEE
Q 033484 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKC 58 (118)
Q Consensus 22 i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~v 58 (118)
+..+-|-||.+|++|..-.. -.+.||+.|.+..
T Consensus 53 vR~n~ltKGaII~~d~GkA~----VTSRPGQdG~vna 85 (98)
T 2kcp_A 53 VRRNIITRGAVVETNLGNVR----VTSRPGQDGVING 85 (98)
T ss_dssp CCSSCCCTTCEEEESSSEEE----ECSCTTGGGSCEE
T ss_pred eecccEEeeeEEEecCcEEE----EecCCCCccEEEE
Confidence 34566999999999855433 3569999887543
No 88
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein northeast structural genom consortium (NESG), target SR232, PSI-2; NMR {Bacillus subtilis}
Probab=20.60 E-value=65 Score=21.83 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=17.7
Q ss_pred ecccccCceEEEECCeeEEEEEe
Q 033484 23 QAGTIRKNGYIVIKGRPCKVVEV 45 (118)
Q Consensus 23 ~~~~lkkG~~i~i~g~P~~Vve~ 45 (118)
..++-|-+..|.++|.+|.+++-
T Consensus 3 ~~~~~~~~~~i~i~~~~yelv~n 25 (110)
T 2kl5_A 3 GMSEKRGEIMILIQNAEFELVHN 25 (110)
T ss_dssp TTTCCCCSCEEEETTEEEEEEEE
T ss_pred ccccccCCCEEEECCEEEEEEeh
Confidence 34555656689999999999974
No 89
>3p02_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.55A {Bacteroides ovatus}
Probab=20.45 E-value=2.5e+02 Score=22.04 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=22.7
Q ss_pred eEEEEEeeE----ecCCCC-cccEEEEEEEEccCCc
Q 033484 39 PCKVVEVST----SKTGKH-GHAKCHFVGIDIFNGK 69 (118)
Q Consensus 39 P~~Vve~~~----~kpGKh-G~A~vrik~knl~TG~ 69 (118)
|.+|.+... ..|.|+ ..|.+|++.+|=.+|.
T Consensus 125 Pl~I~s~s~~~y~~np~K~y~~~L~~i~~~NdYsG~ 160 (317)
T 3p02_A 125 PLKVCEDANGTYAVNPRKYYRTAVLRPILFNEFSGR 160 (317)
T ss_dssp EEEEEEC-CGGGGSSTTTTTCEEEEEEEEECTTCEE
T ss_pred EEEEEecCCCceEeccccCcceEEEEEEEecccCcc
Confidence 778877644 245664 5699999999999885
No 90
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=20.36 E-value=1.4e+02 Score=19.19 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=8.6
Q ss_pred ccCceEEEECCeeE
Q 033484 27 IRKNGYIVIKGRPC 40 (118)
Q Consensus 27 lkkG~~i~i~g~P~ 40 (118)
|+||+.|.+.|.+-
T Consensus 68 l~KG~~V~V~G~l~ 81 (116)
T 3vdy_A 68 CQKGSLVGVSGRIQ 81 (116)
T ss_dssp CCTTCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEE
Confidence 56666666666554
No 91
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=20.34 E-value=1.2e+02 Score=20.57 Aligned_cols=36 Identities=8% Similarity=-0.145 Sum_probs=18.8
Q ss_pred EEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033484 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 60 ik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
+.++...+.+..+.+|+-++.+++-..+-+.++-++
T Consensus 51 ~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~v 86 (133)
T 4a1y_A 51 ITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIV 86 (133)
T ss_dssp EEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEE
T ss_pred EEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEE
Confidence 334444455555556666666655555555544444
Done!