BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033485
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08004|BUD20_YEAST Bud site selection protein 20 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD20 PE=1 SV=1
Length = 166
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 13 RYS---HKTARLAKFLRKGDDAVYDELQRSDSAKNPL--PFDEDLPGMGQYYCLHCDRYF 67
RYS +KT R + L D +Y++L +S + L P DE PG+GQ+YC+HC +Y
Sbjct: 3 RYSVKRYKTKRRTRDL----DLIYNDLSTKESVQKLLNQPLDETKPGLGQHYCIHCAKYM 58
Query: 68 AHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGM 108
H K K HK+RVKE+ G P+TQ +D AAG +
Sbjct: 59 ETAIALKTHLKGKVHKRRVKELRGV-PYTQEVSDAAAGYNL 98
>sp|B0BLT0|ZN593_XENTR Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1
Length = 128
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 48 FDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
D LPG Q+YCLHC RYF EHFKTK HK+R+K+ + +P+TQ +A+ AAGMG
Sbjct: 51 IDYQLPGNAQHYCLHCSRYFVDLKTLKEHFKTKVHKRRLKQ-LREEPYTQEEAERAAGMG 109
Query: 108 --MPDNGPKLMPV 118
+P PKL+ V
Sbjct: 110 SYIP---PKLINV 119
>sp|Q9U239|ZN593_CAEEL Zinc finger protein 593 homolog OS=Caenorhabditis elegans
GN=Y56A3A.18 PE=3 SV=1
Length = 128
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 30 DAVYDELQRSDSAKN-PLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKE 88
D ++++L+ +AK D DLPG GQ+YC+ C+R+F E R H KTK HK RVK
Sbjct: 24 DQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIECERHFVDEKTRQLHRKTKLHKNRVK- 82
Query: 89 MMGPKPHTQLDADLAAGMGM 108
+ P+TQ +A+ A G G
Sbjct: 83 TLKEVPYTQAEANAAGGSGF 102
>sp|Q553S1|ZN593_DICDI Zinc finger protein 593 homolog OS=Dictyostelium discoideum
GN=DDB_G0275351 PE=3 SV=1
Length = 141
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 9 VKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAK-NPLPFDEDLPGMGQYYCLHCDRYF 67
KK++Y K AR K K D ++DE+Q K + D DLPGMGQ YC+HC ++F
Sbjct: 12 TKKKQY--KRARSTKNRAKDIDQIFDEIQPETIDKFSKFEVDPDLPGMGQNYCIHCSKHF 69
Query: 68 AHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMPDNGPKL 115
H K K HK RVKE+ KP++ ++ + DNG KL
Sbjct: 70 VTNEDLQSHIKGKPHKIRVKELK-TKPYSLAESQIPV-----DNGVKL 111
>sp|Q9P370|BUD20_SCHPO Zinc finger protein bud20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bud20 PE=3 SV=1
Length = 124
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 30 DAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM 89
D ++++L S+ + LP D DLPG+GQ+YC+ C RYF H K K HK+R+K +
Sbjct: 29 DQIHNDLTESEKF-DKLPIDPDLPGLGQHYCIECARYFDSSQALLVHKKGKVHKRRLKNL 87
Query: 90 MGPKPHTQLDADLAAGMGMP 109
+P+TQ +A+ A +G P
Sbjct: 88 R-EEPYTQEEAEAAVNIGQP 106
>sp|O00488|ZN593_HUMAN Zinc finger protein 593 OS=Homo sapiens GN=ZNF593 PE=1 SV=2
Length = 134
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 7/99 (7%)
Query: 15 SHKTARL--AKFLRKGDDAVYDELQRSDSAK-NPLP---FDEDLPGMGQYYCLHCDRYFA 68
+H AR AK R D ++ EL+ SA+ P P FD DLPG G + CL C RYF
Sbjct: 12 AHSLARQMKAKRRRPDLDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFI 71
Query: 69 HESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
+ HF++K HKKR+K+ + +P++Q +A+ AAGMG
Sbjct: 72 DSTNLKTHFRSKDHKKRLKQ-LSVEPYSQEEAERAAGMG 109
>sp|Q8SWF6|Z231_ENCCU Zinc finger C2H2 protein ECU02_0310 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU02_0310 PE=3 SV=1
Length = 104
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 7 RKVKKRRYSHKTARLAKFLRKGDDAVYDELQRSDSAKNPLPFDEDLPGMGQYYCLHCDRY 66
R+ K R K ARL F K D V ++++ ++ + +D +LPG G +YC CDR+
Sbjct: 11 RRSNKNRLRIKRARL--FGPKDIDQVKEDIE----SQKKIEYDPELPGGGHFYCCECDRH 64
Query: 67 FAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGM 106
F E V EH ++ H++R KE+ H+Q DA+ A G+
Sbjct: 65 FITEKVLMEHKRSNPHRRRAKEVREV-AHSQRDAEWAVGL 103
>sp|Q9DB42|ZN593_MOUSE Zinc finger protein 593 OS=Mus musculus GN=Znf593 PE=2 SV=2
Length = 134
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 49 DEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
D DLPG G + CL C RYF + HF++K HKKR+K+ + +P++Q +A+ AAGMG
Sbjct: 52 DPDLPGGGLHRCLACARYFIDSANLKTHFRSKDHKKRLKQ-LSVEPYSQEEAERAAGMG 109
>sp|Q9W3Y0|ZN593_DROME Zinc finger protein 593 homolog OS=Drosophila melanogaster
GN=CG3224 PE=2 SV=1
Length = 162
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 48 FDEDLPGMGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMG 107
D D PG Q+YC+HC +YF ++ HF+TK HK+R+K + +P++ +A+ AAG G
Sbjct: 49 VDLDKPGFAQFYCVHCAKYFIDDTAMQAHFRTKVHKRRLK-ALEIEPYSIEEAERAAGRG 107
>sp|Q7PXU6|RU1C_ANOGA U1 small nuclear ribonucleoprotein C OS=Anopheles gambiae
GN=AGAP001584 PE=2 SV=2
Length = 152
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR H ++HK VK
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 35
>sp|E3X5D6|RU1C_ANODA U1 small nuclear ribonucleoprotein C OS=Anopheles darlingi
GN=AND_14095 PE=3 SV=1
Length = 151
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR H ++HK VK
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 35
>sp|E0VI98|RU1C_PEDHC U1 small nuclear ribonucleoprotein C OS=Pediculus humanus subsp.
corporis GN=PHUM222080 PE=3 SV=1
Length = 173
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR H + ++HK VK
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCQGRKHKDNVK 35
>sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C OS=Vitis vinifera
GN=VIT_07s0104g01170 PE=3 SV=1
Length = 213
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
M +YYC +CD Y H+ SVR +H +HK V+
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRS 36
>sp|C5XYW4|RU1C2_SORBI U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor
GN=Sb04g028260 PE=3 SV=1
Length = 228
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR +H +HK V+
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR 35
>sp|C5XZK6|RU1C1_SORBI U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor
GN=Sb04g009880 PE=3 SV=1
Length = 231
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR +H +HK V+
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR 35
>sp|A7SEP9|RU1C_NEMVE U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis
GN=v1g244745 PE=3 SV=1
Length = 138
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK----EMMGPKPHTQLDADLAAGMGM 108
M +YYC +CD + H+ SVR H ++HK+ V+ + M + T +D AA
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQTTAAFQSK 60
Query: 109 PDN 111
P++
Sbjct: 61 PNS 63
>sp|Q5KC16|RU1C_CRYNJ U1 small nuclear ribonucleoprotein C OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC
MYA-565) GN=CNI00630 PE=3 SV=1
Length = 220
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHESV--RDEHFKTKRHKKRVKE 88
MG+YYC +CD Y H+S+ R H + H V++
Sbjct: 1 MGKYYCDYCDIYLTHDSMNARKAHNSGRNHVANVRD 36
>sp|Q16IW3|RU1C_AEDAE U1 small nuclear ribonucleoprotein C OS=Aedes aegypti
GN=AAEL013527 PE=3 SV=1
Length = 154
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR H ++HK VK
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 35
>sp|C3Z1P5|RU1C_BRAFL U1 small nuclear ribonucleoprotein C OS=Branchiostoma floridae
GN=BRAFLDRAFT_69314 PE=3 SV=1
Length = 221
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +Y+C +CD Y H+ SVR H ++HK+ V+
Sbjct: 1 MPKYFCDYCDTYLTHDSPSVRKTHCNGRKHKENVR 35
>sp|Q8JGS0|RU1C_DANRE U1 small nuclear ribonucleoprotein C OS=Danio rerio GN=snrpc PE=2
SV=1
Length = 159
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
M ++YC +CD Y H+ SVR H ++HK+ VK+
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD 36
>sp|Q298E0|RU1C_DROPS U1 small nuclear ribonucleoprotein C OS=Drosophila pseudoobscura
pseudoobscura GN=snRNP-U1-C PE=3 SV=1
Length = 146
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR H ++H+ VK
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVK 35
>sp|Q8BZ94|ZMAT4_MOUSE Zinc finger matrin-type protein 4 OS=Mus musculus GN=Zmat4 PE=2
SV=1
Length = 229
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 60 CLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGMGMP--DNGP 113
C C+ F V D H++ K H KR+K ++G KP + A + + P D P
Sbjct: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKPPLKTTAAPLSSLKAPRVDTAP 132
>sp|B7Q2M2|RU1C_IXOSC U1 small nuclear ribonucleoprotein C OS=Ixodes scapularis
GN=ISCW020627 PE=3 SV=1
Length = 150
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 58 YYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK----EMMGPKPHTQLDADLAA 104
YYC +CD Y H+ SVR H ++HK+ VK + M + +DA AA
Sbjct: 12 YYCDYCDTYLTHDSPSVRKTHCNGRKHKENVKFYYQKWMEEQAQNLIDATTAA 64
>sp|E3LAN7|RU1C1_PUCGT U1 small nuclear ribonucleoprotein C-1 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_19611 PE=3 SV=1
Length = 190
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
MG+YYC +CD + E SVR H + H V++
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRD 36
>sp|E3KIY6|RU1C2_PUCGT U1 small nuclear ribonucleoprotein C-2 OS=Puccinia graminis f.
sp. tritici (strain CRL 75-36-700-3 / race SCCL)
GN=PGTG_10639 PE=3 SV=1
Length = 188
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
MG+YYC +CD + E SVR H + H V++
Sbjct: 1 MGKYYCDYCDVFLVSESPSVRKAHNSGRNHLTNVRD 36
>sp|Q9VE17|RU1C_DROME U1 small nuclear ribonucleoprotein C OS=Drosophila melanogaster
GN=snRNP-U1-C PE=1 SV=1
Length = 145
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR H ++H+ VK
Sbjct: 1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVK 35
>sp|Q54YA5|RU1C_DICDI U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum
GN=snrpC PE=3 SV=1
Length = 174
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKEMMGPKPHTQLDADLAAGM 106
M +YYC +CD+Y H+ SVR H K+HK V+ + Q +A+ +
Sbjct: 1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLF-----YQQFEAEFTQSL 49
>sp|Q4P2Q5|RU1C_USTMA U1 small nuclear ribonucleoprotein C OS=Ustilago maydis (strain
521 / FGSC 9021) GN=UM05608 PE=3 SV=1
Length = 221
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
MG++YC +CD + H+ SVR H + H + V+E
Sbjct: 1 MGKHYCDYCDVFLTHDSVSVRKAHNSGRNHLQNVRE 36
>sp|F6TFD9|RU1C_MACMU U1 small nuclear ribonucleoprotein C OS=Macaca mulatta GN=SNRPC
PE=3 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1
SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|E2RGI3|RU1C_CANFA U1 small nuclear ribonucleoprotein C OS=Canis familiaris GN=SNRPC
PE=3 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|Q32PA0|RU1C_BOVIN U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2
SV=2
Length = 159
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|E1C6F0|RU1C_CHICK U1 small nuclear ribonucleoprotein C OS=Gallus gallus GN=SNRPC PE=3
SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|D3ZCL3|RU1C_RAT U1 small nuclear ribonucleoprotein C OS=Rattus norvegicus GN=Snrpc
PE=3 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|Q62241|RU1C_MOUSE U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc PE=2
SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|B0JYS7|RU1C_XENTR U1 small nuclear ribonucleoprotein C OS=Xenopus tropicalis GN=snrpc
PE=2 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrpc
PE=2 SV=1
Length = 159
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE----MMGPKPHTQLDADLAA 104
M ++YC +CD Y H+ SVR H ++HK+ VK+ M + + +D AA
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAA 56
>sp|D3B3B7|RU1C_POLPA U1 small nuclear ribonucleoprotein C OS=Polysphondylium pallidum
GN=snrpC PE=3 SV=1
Length = 141
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRV 86
M +YYC +CD+Y H+ SVR H K H++ V
Sbjct: 1 MPKYYCEYCDKYLTHDSPSVRKSHTIGKVHQQAV 34
>sp|Q56XE4|RU1C_ARATH U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana
GN=At4g03120 PE=1 SV=1
Length = 207
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD Y H+ SVR +H +HK V+
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR 35
>sp|F7ARS3|RU1C_MONDO U1 small nuclear ribonucleoprotein C OS=Monodelphis domestica
GN=SNRPC PE=3 SV=1
Length = 138
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVKE 88
M ++YC +CD Y H+ SVR H ++HK+ V++
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVRD 36
>sp|Q1RLC9|RU1C_CIOIN U1 small nuclear ribonucleoprotein C OS=Ciona intestinalis PE=2
SV=1
Length = 122
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +Y+C +CD Y H+ SVR H ++HK VK
Sbjct: 1 MPKYFCDYCDTYLTHDSPSVRKTHCSGRKHKDNVK 35
>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1
Length = 363
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 55 MGQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPKPHTQ 97
+GQ C C+ E + H K+H++RV E+ G K TQ
Sbjct: 48 LGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQ 90
>sp|A8XW44|RU1C_CAEBR U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae
GN=CBG19656 PE=3 SV=1
Length = 142
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD + H+ SVR H ++HK V+
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVR 35
>sp|Q9H898|ZMAT4_HUMAN Zinc finger matrin-type protein 4 OS=Homo sapiens GN=ZMAT4 PE=2
SV=1
Length = 229
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 60 CLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPK 93
C C+ F V D H++ K H KR+K ++G K
Sbjct: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEK 110
>sp|Q0VD35|ZMAT4_BOVIN Zinc finger matrin-type protein 4 OS=Bos taurus GN=ZMAT4 PE=2 SV=1
Length = 229
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 60 CLHCDRYFAHESVRDEHFKTKRHKKRVKEMMGPK 93
C C+ F V D H++ K H KR+K ++G K
Sbjct: 77 CTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEK 110
>sp|P90815|RU1C_CAEEL U1 small nuclear ribonucleoprotein C OS=Caenorhabditis elegans
GN=F08B4.7 PE=3 SV=1
Length = 142
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHE--SVRDEHFKTKRHKKRVK 87
M +YYC +CD + H+ SVR H ++HK V+
Sbjct: 1 MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVR 35
>sp|O59706|SAP61_SCHPO Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sap61 PE=1 SV=1
Length = 492
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 58 YYCLHCDRYFAHESVRDEHFKTKRHKKRVKEM 89
+YC C ++F +V + H K+K H K VK M
Sbjct: 243 FYCEVCQKFFGKITVFEAHKKSKAHNKAVKRM 274
>sp|D0NHA2|RU1C_PHYIT U1 small nuclear ribonucleoprotein C OS=Phytophthora infestans
(strain T30-4) GN=PITG_10871 PE=3 SV=1
Length = 138
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 55 MGQYYCLHCDRYFAHESV--RDEHFKTKRHKKRVK 87
M +YYC +CD Y H+S R +H + +H++ VK
Sbjct: 1 MPRYYCDYCDTYLTHDSQAGRKQHNRGWKHRENVK 35
>sp|O54836|ZMAT3_MOUSE Zinc finger matrin-type protein 3 OS=Mus musculus GN=Zmat3 PE=2
SV=1
Length = 290
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 56 GQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKE 88
GQ+YC C+ E +H ++K+HK +V E
Sbjct: 244 GQFYCSMCNVGAGEEVEFRQHLESKQHKSKVSE 276
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 59 YCLHCDRYFAHESVRDEHFKTKRHKKRVK 87
YC CD F+ +V H++ K H KR++
Sbjct: 149 YCKLCDASFSSPAVAQAHYQGKNHAKRLR 177
>sp|O08781|ZMAT3_RAT Zinc finger matrin-type protein 3 OS=Rattus norvegicus GN=Zmat3
PE=2 SV=1
Length = 289
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 56 GQYYCLHCDRYFAHESVRDEHFKTKRHKKRVKE 88
GQ+YC C+ E +H ++K+HK +V E
Sbjct: 243 GQFYCSMCNVGAGEEVEFRQHLESKQHKSKVSE 275
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 59 YCLHCDRYFAHESVRDEHFKTKRHKKRVK 87
YC CD F+ +V H++ K H KR++
Sbjct: 148 YCKLCDASFSSPAVAQAHYQGKNHAKRLR 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,481,340
Number of Sequences: 539616
Number of extensions: 1894572
Number of successful extensions: 5894
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 5779
Number of HSP's gapped (non-prelim): 156
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)