BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033487
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1
SV=1
Length = 152
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 117/118 (99%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2
SV=1
Length = 152
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/118 (74%), Positives = 107/118 (90%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS
Sbjct: 1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR
Sbjct: 61 DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIR 118
>sp|Q8IT98|RS18_ARGIR 40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2
SV=1
Length = 152
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 86/118 (72%), Positives = 107/118 (90%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
M+L+ E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS
Sbjct: 1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR
Sbjct: 61 EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIR 118
>sp|Q8JGS9|RS18_DANRE 40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1
Length = 152
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 104/118 (88%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|P62271|RS18_RAT 40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|P62272|RS18_PIG 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|P62270|RS18_MOUSE 40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=1 SV=3
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|P62269|RS18_HUMAN 40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|A5JST6|RS18_CAPHI 40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|Q3T0R1|RS18_BOVIN 40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3
Length = 152
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1
Length = 152
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/118 (68%), Positives = 104/118 (88%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61 EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118
>sp|P49202|RS18_CHLRE 40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18
PE=2 SV=1
Length = 153
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 101/117 (86%)
Query: 2 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
SLV +DFQHILR+LNTNVDGK KIM+A+T+I+GIGRR +N+VCKKA+VD+ K AGE SA
Sbjct: 3 SLVQGDDFQHILRLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSA 62
Query: 62 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S+ LD +RDDLERLKKIR
Sbjct: 63 DELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTSSQLDTVMRDDLERLKKIR 119
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2
SV=1
Length = 152
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 103/118 (87%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ ++ +++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR
Sbjct: 61 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 118
>sp|O94754|RS18_SCHPO 40S ribosomal protein S18 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps18a PE=1 SV=1
Length = 152
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 100/118 (84%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV ++FQHILR+LNTNVDGK K+MFA+T IKG+GRR ANIVCKKAD+DM+KRAGEL+
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
EL+ ++ ++ NP QFKIP WFLNRQKD DGK Q+++N +D KLR+DLERLKKI+
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQ 118
>sp|Q869U7|RS18_DICDI 40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3
SV=1
Length = 154
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 96/117 (82%)
Query: 2 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
SLV +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAGELS
Sbjct: 4 SLVFQGEFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSK 63
Query: 62 AELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ L ++ +PRQ+ IP WFLNRQKD KDGKYS ++N +D+K R+DLERLKKIR
Sbjct: 64 DEVERLTTIMNHPRQYNIPTWFLNRQKDIKDGKYSHCLANQIDVKFREDLERLKKIR 120
>sp|P41094|RS18_DROME 40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1
SV=1
Length = 152
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 98/118 (83%)
Query: 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
MSLV E FQHILR++NTN+DGK+K+ A+T+IKG+GRR +NIV KKADVD+ KRAGE +
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 61 AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E+D ++ +++NP Q+K+P+WFLNRQKD DGKY Q+ S+ LD KLRDDLERLKKIR
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIR 118
>sp|P0CX56|RS18B_YEAST 40S ribosomal protein S18-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS18B PE=1 SV=1
Length = 146
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 95/120 (79%), Gaps = 2/120 (1%)
Query: 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGE 58
MSLV E FQHILR+LNTNVDG KI++ALT+IKG+GRR +N+VCKKADVD++KRAGE
Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGE 60
Query: 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L+ EL+ ++ ++ NP +KIP WFLNRQ D DGK ++N ++ KLRDDLERLKKIR
Sbjct: 61 LTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120
>sp|P0CX55|RS18A_YEAST 40S ribosomal protein S18-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS18A PE=1 SV=1
Length = 146
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 95/120 (79%), Gaps = 2/120 (1%)
Query: 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGE 58
MSLV E FQHILR+LNTNVDG KI++ALT+IKG+GRR +N+VCKKADVD++KRAGE
Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGE 60
Query: 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L+ EL+ ++ ++ NP +KIP WFLNRQ D DGK ++N ++ KLRDDLERLKKIR
Sbjct: 61 LTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120
>sp|P48151|RS18_ENTHI 40S ribosomal protein S18 OS=Entamoeba histolytica GN=RPS18 PE=2
SV=1
Length = 155
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
Query: 1 MSLVANE-DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59
M+ V +E +FQH+LRV NTN+DG++K+ +ALT IKG GRR A +VCK+A +D+NKRAG +
Sbjct: 1 MATVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLM 60
Query: 60 SAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ AE++ ++ ++ +KIP WFLNRQKD KDGK SQ+++NA++ +LR+D+E LKK+R
Sbjct: 61 TPAEIEKIVDILTTQLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMR 119
>sp|Q2NFZ3|RS13_METST 30S ribosomal protein S13 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps13 PE=3 SV=1
Length = 153
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 4 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 63
+A ++F+H++R+ +VDG I ALT I+GIG+ A +CK D+D + + G +
Sbjct: 1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIGYIDDES 60
Query: 64 LDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ + V+ NP++F IP+WFLNR+ DY+ G+ ++ + L+M LRDDL R+K IR
Sbjct: 61 VKQIEAVLENPQEFGIPEWFLNRRNDYETGETKHLIESDLNMTLRDDLNRMKMIR 115
>sp|A5UN52|RS13_METS3 30S ribosomal protein S13 OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps13 PE=3 SV=1
Length = 147
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 75/112 (66%)
Query: 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66
+DF+H++R+ +VDG + I ALT IKG+G L+ +C+ D+D + G ++ ++
Sbjct: 3 DDFKHLVRISRKDVDGNKTIEQALTEIKGVGISLSTTMCRTLDLDSEAQIGYIADEDVLK 62
Query: 67 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ ++ NP++F IP+W LNR++DY+ G+ ++ + LDM LRDDL R+KK R
Sbjct: 63 IEEILENPQKFNIPNWMLNRREDYETGENIHLIESDLDMTLRDDLNRMKKTR 114
>sp|O26141|RS13_METTH 30S ribosomal protein S13 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps13 PE=3 SV=1
Length = 149
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 74/112 (66%)
Query: 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66
E+F+H++R+ ++DG + + ALTSIKG+G+ L+ + A D+N+R G LS E++
Sbjct: 3 EEFKHMVRIARKDIDGNKTMENALTSIKGVGKALSRAIIMSAGYDLNQRIGYLSDEEIER 62
Query: 67 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L + NP ++ IP W +NR+ DY+ G+ ++ + L+M LR+DL R++K R
Sbjct: 63 LEEAIKNPAKYNIPSWMINRRNDYETGEDKHLIESDLEMCLREDLNRMRKTR 114
>sp|Q8SRP2|RS18_ENCCU 40S ribosomal protein S18 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPS18 PE=1 SV=1
Length = 153
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 70/109 (64%)
Query: 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67
+ Q+I+R+ NTN+DG ++I FALT I+GIG R+A +CK+ +D+ KRAGE+ E+ +
Sbjct: 9 EVQYIVRIHNTNIDGTKRIPFALTKIRGIGIRIATAICKRLGIDLRKRAGEMGEDEMKRI 68
Query: 68 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKK 116
+ +P IP+ ++N Q+D DG S ++ LD LR +ER KK
Sbjct: 69 SDAILDPASVGIPESYMNHQRDIIDGTTSHLIGTRLDADLRMMIERGKK 117
>sp|O74021|RS13_PYRHO 30S ribosomal protein S13 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps13 PE=3 SV=1
Length = 148
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 74/111 (66%)
Query: 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67
DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ +
Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 68 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
++ +P IP W +NR KDY+ GK +++ LDM +R+D+ RL++IR
Sbjct: 63 EEILQDPVSHGIPRWAVNRPKDYETGKDLHLITAKLDMAIREDIMRLRRIR 113
>sp|Q8U0E2|RS13_PYRFU 30S ribosomal protein S13 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps13 PE=1 SV=1
Length = 148
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 75/111 (67%)
Query: 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67
+F+HI+RV ++DG +++ +ALT+IKGIG A +VC+ A +D +AG L+ ++ +
Sbjct: 3 NFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 68 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
++A+P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR
Sbjct: 63 EEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIR 113
>sp|Q9V1A0|RS13_PYRAB 30S ribosomal protein S13 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps13 PE=3 SV=1
Length = 148
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 74/111 (66%)
Query: 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67
DF+HI+RV ++DG +++ +ALT+IKG+G A +VC+ A +D +AG L+ ++ +
Sbjct: 3 DFRHIVRVAGVDLDGNKQLRWALTAIKGVGINFATMVCRVAGLDPFMKAGYLTDEQVKKI 62
Query: 68 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
++ +P IP W +NR KDY+ G+ +++ LDM +R+D+ RL++IR
Sbjct: 63 EEILQDPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIR 113
>sp|Q5JJF1|RS13_PYRKO 30S ribosomal protein S13 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps13 PE=3 SV=1
Length = 149
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 72/113 (63%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
E+F+HI+RV ++DG +++ +ALT IKGIG A +V + A +D +AG L+ ++
Sbjct: 2 TENFRHIVRVAGVDIDGHKQVRWALTGIKGIGINFATMVLRVAGIDPFMKAGYLTDEQVK 61
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ ++A+P IP W +NR KDY+ GK +++ L M R+D+ RL++IR
Sbjct: 62 KIEEILADPVAHGIPAWAVNRPKDYETGKDMHLITAKLVMAWREDVNRLRRIR 114
>sp|A2BK76|RS13_HYPBU 30S ribosomal protein S13 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rps13 PE=3 SV=1
Length = 151
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 73/116 (62%)
Query: 3 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62
+++ + +++I+R+L T++ G K+ + L +KGIG LA +C+ +D NKR G L+ A
Sbjct: 1 MLSEQQYRYIVRILGTDIPGDLKVPYGLALVKGIGVNLAYALCRLLGIDPNKRIGFLTDA 60
Query: 63 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E++ + +ANP IP W LNR+KDY+ GK +V L ++ D+ER K+IR
Sbjct: 61 EIEKIEKAMANPLAIGIPVWMLNRRKDYETGKDLHLVGADLIYYVKRDIEREKRIR 116
>sp|A3DMQ3|RS13_STAMF 30S ribosomal protein S13 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps13 PE=3 SV=1
Length = 151
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 70/116 (60%)
Query: 3 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62
+ + ++++I+R+ T++DG K ++ L IKG+G LA +C++ +D R G L+
Sbjct: 1 MSSARNYRYIVRIAGTDIDGSLKTVYGLAEIKGVGVNLAYGICRRLGIDPEMRIGYLTDE 60
Query: 63 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
E+ + +++NP + IP W LNR+KDY GK ++ L ++ D+ER KKI+
Sbjct: 61 EIKRIEDLLSNPSAYDIPSWMLNRRKDYVTGKDMHLIGAELIFYVKQDIEREKKIK 116
>sp|Q8TVC1|RS13_METKA 30S ribosomal protein S13 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps13 PE=3 SV=1
Length = 151
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 4 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 63
+A+++ + I+R+ + ++DG +K+ +ALT IKGIG R+A +C++ +D K+ GELS E
Sbjct: 1 MADDEVKPIVRIADVDLDGHKKVPYALTGIKGIGIRMAYAICRELGLDEEKKLGELSDEE 60
Query: 64 LDNLMVVVA--NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
++ + + + + IP W NRQKDY+ G+ +V L+M ++ D++RLKKIR
Sbjct: 61 IERIEEEIKKLSEGESNIPSWMYNRQKDYETGEDMHLVGAELEMTVKQDIDRLKKIR 117
>sp|Q6KZP8|RS13_PICTO 30S ribosomal protein S13 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps13
PE=3 SV=1
Length = 158
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 71/113 (62%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
NE+FQ+I+R+ N +++G++ + AL +KGIG RL+ + KK D+D ++R GEL +++
Sbjct: 8 NENFQYIVRIANKDLNGERPLKLALADLKGIGLRLSETIAKKLDLDPDQRIGELGEDKIE 67
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L + IP W N ++D GK +VSN LD+++ DD+ +KK+R
Sbjct: 68 ELRKYIEGKVYDGIPYWMYNHRRDITTGKDFNLVSNDLDLQINDDINLMKKMR 120
>sp|P54019|RS13_METJA 30S ribosomal protein S13 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps13 PE=3 SV=2
Length = 150
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 73/113 (64%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
N +F++++RV T++DG +K++ AL I G+G +A + + A +D NK AG L+ E+
Sbjct: 3 NSEFKYLIRVSRTDLDGNKKLIMALQDIYGVGEAMARAIVRVAKLDPNKLAGYLTEEEVK 62
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ V+A+P +F IP W NR+KDY G+ V+ + L + ++D+ RLK+IR
Sbjct: 63 KIEEVLADPAKFGIPSWMFNRRKDYVTGEDKHVIESDLMIIKQEDINRLKRIR 115
>sp|Q3IQT9|RS13_NATPD 30S ribosomal protein S13 OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps13 PE=3 SV=1
Length = 170
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
+ED Q+ +R+ T++DG + + ALT + GIGRR+A I+ +KA+VD G L ++D
Sbjct: 12 DEDLQYFVRIGQTDLDGTKSVERALTDMNGIGRRVARIIAEKAEVDRRDVLGALDEEKID 71
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKI 117
+++ V ++P+W N QKD+ G+ + + N L M R D+ R+KKI
Sbjct: 72 DVVAAVEEYGD-EVPEWLTNHQKDFFTGETTHEIGNDLQMSRRQDINRMKKI 122
>sp|P95986|RS13_SULSO 30S ribosomal protein S13 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps13 PE=3 SV=1
Length = 165
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 69/113 (61%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
++ F++++R+ +VDG K+ +AL +KGIG A + +K +D N R GELS AE+
Sbjct: 2 SQQFKYVVRIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVK 61
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ V+++ +P W NR+KDY+ G +V++ L +R+D+ER KK R
Sbjct: 62 KVESVISDHTIKGLPSWLYNRRKDYESGLDLHLVTSDLIFYVRNDIEREKKSR 114
>sp|Q97B96|RS13_THEVO 30S ribosomal protein S13 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps13 PE=3 SV=1
Length = 171
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
N+DFQ+I+R+ N +++G++ I AL+ +KGIG RL + ++ ++ K+ GEL E++
Sbjct: 25 NKDFQYIVRIANKDLNGERPIPLALSDLKGIGLRLGYAIAERLNLQPTKKIGELKEDEIE 84
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L V N +++ +PDW LN +++ GK +V+ LD+++++D+ +KKIR
Sbjct: 85 KLKEYVEN-KEYDLPDWLLNHRREPVTGKNLNLVTTDLDVQVQEDINLMKKIR 136
>sp|A0B9L1|RS13_METTP 30S ribosomal protein S13 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps13 PE=3 SV=1
Length = 159
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67
+ +HI+R+ NT++DGK+++ ALT IKG+GRRLA + KA VD G+L +++ L
Sbjct: 11 ELRHIVRIYNTDLDGKKQVQMALTGIKGVGRRLARVFAVKAGVDPCATLGKLPEEQIEAL 70
Query: 68 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
V+ + R IP W +NR+KD G V+ + LR+DL+ +KK R
Sbjct: 71 KNVIESVRD-NIPAWMMNRRKDIITGVDKHVMGAEVLTTLREDLDIMKKTR 120
>sp|Q9HJD6|RS13_THEAC 30S ribosomal protein S13 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps13 PE=3 SV=1
Length = 171
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
N+DFQ+I+R+ N +++G++ + AL+ +KGIG RL ++ ++ D+ ++K+ GEL +L+
Sbjct: 25 NKDFQYIVRIANKDLNGERLLPLALSDLKGIGERLGYVIAERLDLPIDKKIGELKEEQLE 84
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L V +++ +P+W LN +++ GK +VS L++++++D+ +KKIR
Sbjct: 85 KLREYVE-AKEYDLPEWLLNHRREPVTGKNLNLVSTDLEIQVQEDINLMKKIR 136
>sp|Q0W1V6|RS13_UNCMA 30S ribosomal protein S13 OS=Uncultured methanogenic archaeon RC-I
GN=rps13 PE=3 SV=1
Length = 224
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66
++ ++I+R+ NT++DG Q + FALT IKGIG R++ I+ ++A VD + G L ++D
Sbjct: 67 DEIKYIVRIANTDLDGTQTVEFALTGIKGIGNRISKIIARQAQVDPHATMGYLPPEQVDK 126
Query: 67 LMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L V+ N + +P W LNR++D G+ + L M +++D+ +KKIR
Sbjct: 127 LRAVIDN-LEANVPVWMLNRRRDIYTGEDKHLYGVDLTMAVKEDINIMKKIR 177
>sp|Q8TRR2|RS13_METAC 30S ribosomal protein S13 OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps13 PE=3
SV=2
Length = 162
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
NE+ +H++R++NT++ G + + +ALT + G+GRR A ++ K A VD + G L E+
Sbjct: 17 NEELRHLVRIMNTDLQGAKPVQYALTGLPGVGRRTAKLIAKGAGVDPSAILGYLPEEEVA 76
Query: 66 NLMVVVANPRQFK--IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L + +F+ +P W LNRQKD G+ ++ + + R+D+ LKK+R
Sbjct: 77 KLDTAIG---KFEDIVPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVR 128
>sp|Q8PV19|RS13_METMA 30S ribosomal protein S13 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps13 PE=3 SV=1
Length = 162
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+
Sbjct: 17 NEELRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVA 76
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L + + +P W LNRQKD G+ ++ + + R+D+ LKK+R
Sbjct: 77 KLDAAIGKFEEI-VPSWMLNRQKDLTTGQDKHLLGTDILLTFREDINNLKKVR 128
>sp|Q46GC7|RS13_METBF 30S ribosomal protein S13 OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rps13 PE=3 SV=1
Length = 162
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
NE+ +H++R++NT++ G + + +ALT + GIGRR A ++ K A VD G L E+
Sbjct: 17 NEEIRHLVRIMNTDLKGAKPVEYALTGLPGIGRRTAILIAKGAGVDPTATLGYLPDEEVA 76
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
L + N +P W LNRQKD G+ ++ + + R+D+ LKK+R
Sbjct: 77 KLDRAIGNFEGI-VPSWMLNRQKDLATGQDKHLLGTDILLTFREDINNLKKVR 128
>sp|Q96YV7|RS13_SULTO 30S ribosomal protein S13 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rps13 PE=3 SV=1
Length = 172
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 70/116 (60%)
Query: 3 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62
+ + F++I+R+ +VDG K+ +AL +KGIG A + K +D ++R GELS
Sbjct: 1 MSQQQQFKYIVRLFGQDVDGTMKVPYALAMVKGIGYNTARAIVFKLGLDKDRRLGELSDE 60
Query: 63 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
++ + + + + ++P+W NR+KDY+ G +V++ L +R+D+ER KKI+
Sbjct: 61 DIKKIENYLTDKKILEVPNWMYNRRKDYESGIDMHLVTSDLIFYVRNDIEREKKIK 116
>sp|Q9YB60|RS13_AERPE 30S ribosomal protein S13 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps13p PE=3
SV=2
Length = 150
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 3 LVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62
+ F++I+R+ ++DG K+ + L SIKGIG A V + +D K+ G L+
Sbjct: 1 MAGETSFKYIVRIAGVDIDGDLKLPYGLASIKGIGYTTAMAVIRMLGLDPEKKVGFLTEE 60
Query: 63 ELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKI 117
E+ L V+ + Q +P W NR+KDY+ GK ++ + L R D+ER KI
Sbjct: 61 EIRRLDEVLRDITQLGLPKWLYNRRKDYETGKDLHLIGSELIFYARRDIEREMKI 115
>sp|Q6LXN1|RS13_METMP 30S ribosomal protein S13 OS=Methanococcus maripaludis (strain S2 /
LL) GN=rps13 PE=3 SV=1
Length = 149
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 67/115 (58%)
Query: 4 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 63
+ +F+H +R+ T+++GK + +AL +KGIGR +A V + ++D ++AG L+ +
Sbjct: 1 MTQTEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADED 60
Query: 64 LDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ + V+ +P IP W NR+KD G ++ L + +++D+ +KKIR
Sbjct: 61 VLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIR 115
>sp|Q2FT96|RS13_METHJ 30S ribosomal protein S13 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps13 PE=3 SV=1
Length = 151
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 6 NEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65
+++ + +RV NT++DG + ++ +LT IKG+GR A + + A V+ N G+L A +D
Sbjct: 5 DQEINYFVRVHNTDLDGTKPVLISLTGIKGVGRHTAKFIAETAGVEKNVLMGKLDEASVD 64
Query: 66 NLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ VV+N +IP W NR KD G ++ + M + DD+ LKKIR
Sbjct: 65 RIREVVSNYAD-RIPVWMSNRPKDVYTGVKRHLLGADVTMTVDDDINLLKKIR 116
>sp|P39470|RS13_SULAC 30S ribosomal protein S13 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps13 PE=3 SV=2
Length = 170
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 67/108 (62%)
Query: 4 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 63
++ + F++I+R+ +VDG K+ +AL IKGIG A I+ +K ++D +KR GE+S +
Sbjct: 1 MSQQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDED 60
Query: 64 LDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDL 111
+ + ++ N + P+W NRQKDY+ G +V++ L +R+D+
Sbjct: 61 IKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDI 108
>sp|Q12ZR6|RS13_METBU 30S ribosomal protein S13 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps13 PE=3 SV=1
Length = 148
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 4 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 63
+A+E+ +H++R++NT++ GK+ + +ALT I+GIG R + ++ +D N G LS +
Sbjct: 1 MADEEIRHLVRIMNTDLQGKKPVKYALTGIRGIGLRTSRVIVDSTGIDPNAVIGYLSDED 60
Query: 64 LDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ L + + + ++P W LNRQ D G+ ++ + + L++DL LKK R
Sbjct: 61 IKKLDSTI-DKFEEQLPKWMLNRQFDPLTGENKHLLGQDIILTLKEDLNDLKKSR 114
>sp|O27999|RS13_ARCFU 30S ribosomal protein S13 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps13 PE=3 SV=1
Length = 146
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLM 68
F+HI+R+ +T++DG + +MFALT IKGIG R A + + VD + GEL ++ +
Sbjct: 3 FKHIVRIADTDLDGNKSLMFALTGIKGIGLRAARCIVNELGVDGRAKLGELDDETIEKVK 62
Query: 69 VVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
V + +P W LNR+KD G+ ++S +D D+ERL K++
Sbjct: 63 KFVEEEIE-SLPSWLLNRRKDPYSGQDLHLLSKDVDFARMLDIERLIKMK 111
>sp|A1RWT9|RS13_THEPD 30S ribosomal protein S13 OS=Thermofilum pendens (strain Hrk 5)
GN=rps13 PE=3 SV=1
Length = 157
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 65/111 (58%)
Query: 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67
+F++I+RV ++ G + +++AL IKGIG A V KK +D + G LS E++ L
Sbjct: 4 EFRYIVRVAGVDLPGDKALVYALADIKGIGVSTAQAVAKKLGLDPYRLLGTLSEEEVEKL 63
Query: 68 MVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
+ + +P W LNR+KD G ++++ L + +R+D+E +KKI+
Sbjct: 64 SAALREIEKLGLPPWMLNRRKDPFLGVDRHLITSDLLITVRNDIEFMKKIK 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,688,625
Number of Sequences: 539616
Number of extensions: 1318914
Number of successful extensions: 4761
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4231
Number of HSP's gapped (non-prelim): 526
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)