Query 033487
Match_columns 118
No_of_seqs 103 out of 1019
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_M 40S ribosomal protein S 100.0 3.9E-48 1.3E-52 283.0 10.9 118 1-118 1-118 (152)
2 3u5c_S 40S ribosomal protein S 100.0 4.7E-48 1.6E-52 281.0 11.2 118 1-118 1-120 (146)
3 2xzm_M RPS18E; ribosome, trans 100.0 7.2E-47 2.4E-51 277.1 7.1 118 1-118 1-120 (155)
4 3j20_O 30S ribosomal protein S 100.0 1.2E-46 4E-51 274.2 5.9 112 7-118 2-113 (148)
5 2vqe_M 30S ribosomal protein S 100.0 2.1E-29 7.1E-34 179.1 7.2 85 12-118 1-85 (126)
6 3r8n_M 30S ribosomal protein S 99.9 3.9E-28 1.3E-32 170.0 8.4 83 13-118 1-83 (114)
7 3bbn_M Ribosomal protein S13; 99.9 1.6E-24 5.5E-29 156.8 -1.3 67 3-70 31-103 (145)
8 1mu5_A Type II DNA topoisomera 97.3 0.00019 6.5E-09 59.6 4.4 50 24-73 254-303 (471)
9 3u6p_A Formamidopyrimidine-DNA 96.4 0.0038 1.3E-07 48.4 4.8 51 22-72 154-207 (273)
10 1k82_A Formamidopyrimidine-DNA 96.3 0.0042 1.4E-07 48.0 4.7 51 22-72 149-202 (268)
11 1k3x_A Endonuclease VIII; hydr 96.3 0.0042 1.4E-07 47.9 4.6 50 23-72 150-202 (262)
12 1ee8_A MUTM (FPG) protein; bet 96.3 0.0048 1.7E-07 47.7 4.8 52 22-73 142-196 (266)
13 2xzf_A Formamidopyrimidine-DNA 96.2 0.005 1.7E-07 47.6 4.7 51 22-72 152-205 (271)
14 3w0f_A Endonuclease 8-like 3; 96.2 0.0052 1.8E-07 48.4 4.8 51 23-73 174-227 (287)
15 3twl_A Formamidopyrimidine-DNA 96.2 0.0053 1.8E-07 48.6 4.8 51 22-72 167-220 (310)
16 3vk8_A Probable formamidopyrim 96.1 0.006 2.1E-07 47.9 4.5 51 22-72 153-207 (295)
17 3fut_A Dimethyladenosine trans 94.9 0.028 9.6E-07 43.2 4.5 64 7-73 206-269 (271)
18 2zbk_B Type 2 DNA topoisomeras 94.2 0.074 2.5E-06 44.8 5.8 48 26-73 255-302 (530)
19 1kft_A UVRC, excinuclease ABC 94.2 0.024 8.2E-07 35.5 2.2 33 17-49 13-45 (78)
20 1qyr_A KSGA, high level kasuga 93.2 0.096 3.3E-06 39.5 4.3 57 8-72 193-249 (252)
21 2a1j_A DNA repair endonuclease 92.9 0.039 1.3E-06 33.7 1.5 38 28-67 4-41 (63)
22 3uzu_A Ribosomal RNA small sub 92.8 0.038 1.3E-06 42.5 1.7 58 8-73 217-274 (279)
23 1x2i_A HEF helicase/nuclease; 92.5 0.13 4.4E-06 31.2 3.5 51 24-74 10-69 (75)
24 3arc_U Photosystem II 12 kDa e 91.6 0.21 7.1E-06 33.2 3.9 53 21-73 19-74 (97)
25 1z00_A DNA excision repair pro 91.2 0.096 3.3E-06 33.4 1.9 51 24-74 15-74 (89)
26 2a1j_B DNA excision repair pro 91.1 0.11 3.6E-06 33.4 2.0 26 24-49 28-53 (91)
27 3ftd_A Dimethyladenosine trans 90.6 0.24 8.2E-06 37.1 3.9 54 8-73 193-246 (249)
28 3tqs_A Ribosomal RNA small sub 90.6 0.15 5E-06 38.6 2.7 57 8-72 199-255 (255)
29 1s5l_U Photosystem II 12 kDa e 90.4 0.31 1.1E-05 34.4 4.1 63 20-85 55-122 (134)
30 2duy_A Competence protein come 90.0 0.18 6.1E-06 31.1 2.3 49 21-69 20-71 (75)
31 1tdh_A NEI endonuclease VIII-l 89.6 0.033 1.1E-06 45.1 -1.7 40 23-62 158-200 (364)
32 1ixr_A Holliday junction DNA h 87.6 0.088 3E-06 38.9 -0.4 59 15-73 59-129 (191)
33 3gru_A Dimethyladenosine trans 87.4 0.3 1E-05 37.9 2.4 63 9-73 215-287 (295)
34 1cuk_A RUVA protein; DNA repai 85.8 0.13 4.3E-06 38.3 -0.4 59 15-73 60-130 (203)
35 1z00_B DNA repair endonuclease 85.1 0.37 1.2E-05 31.1 1.6 43 23-67 13-55 (84)
36 2ztd_A Holliday junction ATP-d 85.1 0.15 5.1E-06 38.3 -0.3 60 14-73 74-145 (212)
37 2edu_A Kinesin-like protein KI 84.4 1.3 4.4E-05 28.6 4.1 43 27-69 39-88 (98)
38 3fhg_A Mjogg, N-glycosylase/DN 83.7 0.67 2.3E-05 34.0 2.7 43 25-71 114-156 (207)
39 3v76_A Flavoprotein; structura 81.8 1.9 6.4E-05 34.4 4.9 49 22-73 298-346 (417)
40 2nrt_A Uvrabc system protein C 81.7 0.61 2.1E-05 35.2 1.8 39 27-67 167-205 (220)
41 2gqf_A Hypothetical protein HI 81.5 1.8 6.1E-05 34.2 4.6 49 22-73 279-327 (401)
42 3fhf_A Mjogg, N-glycosylase/DN 80.5 0.79 2.7E-05 34.2 2.1 44 25-72 121-165 (214)
43 3n0u_A Probable N-glycosylase/ 80.4 0.9 3.1E-05 34.0 2.4 42 26-71 127-169 (219)
44 1vq8_Y 50S ribosomal protein L 78.4 0.42 1.4E-05 36.4 0.0 38 28-66 15-52 (241)
45 1qam_A ERMC' methyltransferase 78.3 1.2 3.9E-05 32.9 2.4 31 43-73 211-241 (244)
46 3q8k_A Flap endonuclease 1; he 77.7 0.93 3.2E-05 35.9 1.8 34 7-49 220-253 (341)
47 2bgw_A XPF endonuclease; hydro 76.5 1.2 4.1E-05 32.5 2.0 24 26-49 160-183 (219)
48 3vdp_A Recombination protein R 75.6 3.4 0.00012 31.0 4.3 42 24-73 22-63 (212)
49 2ztd_A Holliday junction ATP-d 75.5 1.1 3.9E-05 33.4 1.7 21 28-48 123-143 (212)
50 3b0x_A DNA polymerase beta fam 75.2 1.1 3.7E-05 37.6 1.6 28 24-51 89-116 (575)
51 2eo2_A Adult MALE hypothalamus 72.8 3.7 0.00013 25.8 3.3 37 33-70 23-61 (71)
52 2bcq_A DNA polymerase lambda; 71.8 1.8 6.2E-05 34.1 2.1 30 22-52 90-119 (335)
53 1pu6_A 3-methyladenine DNA gly 71.7 1.6 5.6E-05 32.2 1.7 41 26-70 119-159 (218)
54 1vdd_A Recombination protein R 71.5 5 0.00017 30.5 4.4 42 24-73 8-49 (228)
55 1nd9_A Translation initiation 71.2 1.8 6E-05 23.9 1.4 42 29-71 7-48 (49)
56 3ory_A Flap endonuclease 1; hy 70.8 1.6 5.5E-05 34.8 1.6 34 7-49 238-272 (363)
57 3c65_A Uvrabc system protein C 70.2 0.9 3.1E-05 34.4 0.0 41 25-67 170-210 (226)
58 2dn0_A Zinc fingers and homeob 70.2 2.1 7.1E-05 26.2 1.7 24 50-73 6-29 (76)
59 2fmp_A DNA polymerase beta; nu 69.8 1.9 6.4E-05 34.0 1.7 26 26-52 96-121 (335)
60 2abk_A Endonuclease III; DNA-r 69.4 1.6 5.6E-05 31.8 1.3 23 26-48 107-129 (211)
61 1ixr_A Holliday junction DNA h 68.6 2.1 7.1E-05 31.4 1.7 22 28-49 107-128 (191)
62 1cuk_A RUVA protein; DNA repai 68.5 2.1 7.1E-05 31.6 1.7 20 29-48 109-128 (203)
63 1kg2_A A/G-specific adenine gl 67.3 2.3 7.7E-05 31.4 1.7 42 26-71 107-148 (225)
64 1kea_A Possible G-T mismatches 67.1 2.3 8E-05 31.3 1.7 42 26-71 113-154 (221)
65 2ihm_A POL MU, DNA polymerase 67.1 2.3 7.7E-05 33.9 1.7 41 27-68 101-145 (360)
66 2h56_A DNA-3-methyladenine gly 67.0 2.1 7.3E-05 31.9 1.5 32 25-56 135-167 (233)
67 2w9m_A Polymerase X; SAXS, DNA 66.7 2.3 7.8E-05 35.7 1.7 27 24-51 93-119 (578)
68 2dmp_A Zinc fingers and homeob 66.3 1.9 6.6E-05 27.5 1.0 19 55-73 16-34 (89)
69 2yg9_A DNA-3-methyladenine gly 66.1 2.3 7.7E-05 31.6 1.5 24 25-48 143-166 (225)
70 4e9f_A Methyl-CPG-binding doma 65.9 2.4 8.2E-05 30.2 1.5 58 9-71 88-145 (161)
71 1kft_A UVRC, excinuclease ABC 65.7 2.9 0.0001 25.6 1.7 20 29-48 57-76 (78)
72 1orn_A Endonuclease III; DNA r 65.7 2.2 7.4E-05 31.7 1.3 25 26-50 111-136 (226)
73 1jms_A Terminal deoxynucleotid 65.6 2.5 8.6E-05 34.0 1.7 25 27-52 120-144 (381)
74 3s6i_A DNA-3-methyladenine gly 65.6 2.4 8E-05 31.6 1.5 33 26-58 137-170 (228)
75 4b21_A Probable DNA-3-methylad 65.2 2.4 8.2E-05 31.7 1.5 24 25-48 147-170 (232)
76 1mpg_A ALKA, 3-methyladenine D 64.9 2.4 8.3E-05 32.2 1.5 24 25-48 204-227 (282)
77 4ecq_A DNA polymerase ETA; tra 64.4 5.4 0.00019 32.2 3.5 37 29-65 254-290 (435)
78 2djn_A Homeobox protein DLX-5; 64.3 2.4 8.3E-05 25.5 1.1 16 58-73 13-28 (70)
79 2jhn_A ALKA, 3-methyladenine D 64.3 2.5 8.7E-05 32.5 1.5 25 25-49 207-232 (295)
80 3i0w_A 8-oxoguanine-DNA-glycos 64.2 2.4 8.1E-05 32.7 1.3 43 25-71 208-251 (290)
81 2cue_A Paired box protein PAX6 63.6 2.5 8.6E-05 26.1 1.1 16 58-73 13-28 (80)
82 2a1j_B DNA excision repair pro 62.8 3.5 0.00012 26.0 1.7 21 29-49 65-85 (91)
83 3a03_A T-cell leukemia homeobo 62.7 2 6.8E-05 24.8 0.5 14 59-72 4-17 (56)
84 2da5_A Zinc fingers and homeob 61.6 3.1 0.0001 25.5 1.2 19 55-73 10-28 (75)
85 2hdd_A Protein (engrailed home 60.7 2.8 9.5E-05 24.5 0.9 16 58-73 9-24 (61)
86 1ul1_X Flap endonuclease-1; pr 60.3 3.1 0.0001 33.2 1.3 34 7-49 220-253 (379)
87 2i5h_A Hypothetical protein AF 60.3 3.9 0.00013 30.6 1.8 31 29-59 133-163 (205)
88 1yz8_P Pituitary homeobox 2; D 60.3 3.3 0.00011 24.7 1.2 17 57-73 8-24 (68)
89 2da1_A Alpha-fetoprotein enhan 60.3 2.3 7.9E-05 25.5 0.5 17 57-73 12-28 (70)
90 2cra_A Homeobox protein HOX-B1 60.0 2.3 7.8E-05 25.6 0.4 16 58-73 13-28 (70)
91 2e1o_A Homeobox protein PRH; D 60.0 2.3 8E-05 25.5 0.5 16 58-73 13-28 (70)
92 2dmu_A Homeobox protein goosec 60.0 2.3 8E-05 25.5 0.5 16 58-73 13-28 (70)
93 2dmq_A LIM/homeobox protein LH 59.9 2.3 8E-05 26.1 0.5 16 58-73 13-28 (80)
94 2da2_A Alpha-fetoprotein enhan 59.8 2.4 8.1E-05 25.4 0.5 16 58-73 13-28 (70)
95 1wh5_A ZF-HD homeobox family p 59.6 2.7 9.1E-05 26.3 0.7 15 59-73 24-38 (80)
96 2dmt_A Homeobox protein BARH-l 58.9 2.5 8.5E-05 26.1 0.5 16 58-73 23-38 (80)
97 3a02_A Homeobox protein arista 58.6 2.6 8.8E-05 24.5 0.5 15 59-73 6-20 (60)
98 2ecb_A Zinc fingers and homeob 58.5 3.2 0.00011 26.8 1.0 19 55-73 14-32 (89)
99 3bqs_A Uncharacterized protein 58.4 9.8 0.00034 24.7 3.3 22 30-52 6-27 (93)
100 2xhi_A N-glycosylase/DNA lyase 58.4 3.4 0.00012 32.9 1.3 23 25-47 250-272 (360)
101 3exc_X Uncharacterized protein 58.2 2.5 8.4E-05 27.4 0.4 53 9-73 1-56 (91)
102 2vi6_A Homeobox protein nanog; 58.0 2.7 9.1E-05 24.6 0.5 16 58-73 9-24 (62)
103 2i0z_A NAD(FAD)-utilizing dehy 57.8 13 0.00044 29.3 4.6 50 22-73 319-368 (447)
104 2da7_A Zinc finger homeobox pr 57.8 1.8 6.2E-05 27.3 -0.3 30 58-88 29-58 (71)
105 2dms_A Homeobox protein OTX2; 57.7 2.7 9.2E-05 25.9 0.5 16 58-73 13-28 (80)
106 1zq9_A Probable dimethyladenos 57.7 10 0.00035 28.4 3.8 33 40-73 247-279 (285)
107 4gfj_A Topoisomerase V; helix- 57.6 4.5 0.00015 34.2 1.9 41 27-67 467-515 (685)
108 1zq3_P PRD-4, homeotic bicoid 57.4 6.4 0.00022 23.4 2.2 16 58-73 8-23 (68)
109 1akh_A Protein (mating-type pr 57.3 2.8 9.6E-05 24.3 0.5 15 59-73 12-26 (61)
110 2e19_A Transcription factor 8; 57.2 6.5 0.00022 23.5 2.2 10 79-88 47-56 (64)
111 1wh7_A ZF-HD homeobox family p 57.0 5 0.00017 25.1 1.7 14 59-72 24-37 (80)
112 1cyi_A Cytochrome C6, cytochro 56.8 2.9 0.0001 25.2 0.5 25 57-83 65-89 (90)
113 1ahd_P Antennapedia protein mu 56.8 2.9 9.8E-05 25.1 0.5 16 58-73 8-23 (68)
114 1ig7_A Homeotic protein MSX-1; 56.4 2.9 0.0001 24.0 0.5 15 59-73 7-21 (58)
115 1bw5_A ISL-1HD, insulin gene e 56.4 4.9 0.00017 23.7 1.5 16 58-73 9-24 (66)
116 3fsp_A A/G-specific adenine gl 56.3 4.5 0.00015 31.8 1.7 23 26-48 116-138 (369)
117 1jgg_A Segmentation protein EV 56.1 3 0.0001 24.2 0.5 15 59-73 8-22 (60)
118 1exn_A 5'-exonuclease, 5'-nucl 55.9 4.2 0.00014 31.6 1.4 18 32-49 207-224 (290)
119 2k40_A Homeobox expressed in E 54.9 4.5 0.00016 23.9 1.2 9 79-87 45-53 (67)
120 1nk2_P Homeobox protein VND; h 54.4 3.3 0.00011 25.4 0.5 16 58-73 15-30 (77)
121 2h1k_A IPF-1, pancreatic and d 54.4 3.3 0.00011 24.3 0.5 16 58-73 9-24 (63)
122 1a76_A Flap endonuclease-1 pro 54.3 5.4 0.00019 30.9 1.8 34 7-49 212-245 (326)
123 1b43_A Protein (FEN-1); nuclea 54.2 4.2 0.00015 31.7 1.2 35 7-49 224-258 (340)
124 2kp7_A Crossover junction endo 54.1 5.8 0.0002 25.5 1.6 19 30-48 60-78 (87)
125 1uhs_A HOP, homeodomain only p 54.0 4.7 0.00016 24.3 1.1 14 59-72 8-21 (72)
126 2l7z_A Homeobox protein HOX-A1 54.0 3.3 0.00011 25.2 0.4 16 58-73 13-28 (73)
127 1qa6_A Ribosomal protein L11; 53.2 27 0.00091 21.3 4.5 35 38-72 3-43 (67)
128 2kt0_A Nanog, homeobox protein 52.8 3.6 0.00012 25.4 0.5 16 58-73 28-43 (84)
129 2izo_A FEN1, flap structure-sp 52.8 5.4 0.00018 31.2 1.6 35 7-49 221-255 (346)
130 2hi3_A Homeodomain-only protei 52.5 4.9 0.00017 24.3 1.1 15 58-72 8-22 (73)
131 1k61_A Mating-type protein alp 51.9 4.8 0.00016 23.2 0.9 14 59-72 5-18 (60)
132 1ftt_A TTF-1 HD, thyroid trans 51.9 3.9 0.00013 24.4 0.5 15 59-73 9-23 (68)
133 1mnm_C Protein (MAT alpha-2 tr 51.8 5.3 0.00018 25.0 1.2 18 56-73 31-48 (87)
134 2ecc_A Homeobox and leucine zi 51.2 6.4 0.00022 24.7 1.4 18 56-73 7-24 (76)
135 1rxw_A Flap structure-specific 51.2 5.6 0.00019 30.9 1.4 18 32-49 239-256 (336)
136 2r5y_A Homeotic protein sex co 51.1 5.6 0.00019 24.9 1.2 17 57-73 33-49 (88)
137 1c6r_A Cytochrome C6; electron 50.6 5.7 0.0002 23.7 1.1 17 57-73 66-82 (89)
138 1fjl_A Paired protein; DNA-bin 49.7 4.3 0.00015 25.0 0.5 16 58-73 24-39 (81)
139 1b72_A Protein (homeobox prote 49.2 6.1 0.00021 25.2 1.2 17 57-73 39-55 (97)
140 2da4_A Hypothetical protein DK 49.1 4.3 0.00015 24.9 0.4 16 58-73 14-29 (80)
141 1puf_A HOX-1.7, homeobox prote 49.1 4.5 0.00015 24.7 0.5 16 58-73 19-34 (77)
142 3n5n_X A/G-specific adenine DN 49.0 7.1 0.00024 30.3 1.7 42 27-72 127-169 (287)
143 3a01_A Homeodomain-containing 49.0 4.5 0.00015 25.8 0.5 16 58-73 23-38 (93)
144 3e1s_A Exodeoxyribonuclease V, 48.9 3.9 0.00013 34.2 0.2 26 28-53 44-69 (574)
145 1i4w_A Mitochondrial replicati 48.6 6.2 0.00021 31.3 1.3 61 9-73 271-332 (353)
146 2h1r_A Dimethyladenosine trans 48.3 14 0.00047 27.9 3.2 32 41-73 260-291 (299)
147 1im4_A DBH; DNA polymerase PAL 47.8 10 0.00035 27.8 2.4 28 30-61 186-213 (221)
148 2l9r_A Homeobox protein NKX-3. 47.5 4.9 0.00017 24.6 0.5 15 59-73 11-25 (69)
149 3qe9_Y Exonuclease 1; exonucle 47.3 7.5 0.00025 30.8 1.6 34 7-49 213-246 (352)
150 1b8i_A Ultrabithorax, protein 46.9 5.1 0.00017 24.8 0.5 16 58-73 26-41 (81)
151 1jx4_A DNA polymerase IV (fami 46.6 14 0.00049 28.5 3.2 36 30-66 180-215 (352)
152 2bcq_A DNA polymerase lambda; 45.7 6.5 0.00022 30.9 1.0 41 29-71 58-98 (335)
153 1ci4_A Protein (barrier-TO-aut 45.4 12 0.00039 24.5 2.0 24 28-52 18-41 (89)
154 1puf_B PRE-B-cell leukemia tra 44.6 12 0.00042 22.3 2.0 14 58-71 7-20 (73)
155 2o3f_A Putative HTH-type trans 43.6 12 0.00042 24.4 2.0 23 29-51 44-66 (111)
156 1ls9_A Cytochrome C6; omega lo 43.3 8.6 0.00029 23.1 1.1 17 57-73 68-84 (91)
157 3mfi_A DNA polymerase ETA; DNA 42.9 7.5 0.00026 32.4 1.0 28 29-56 308-335 (520)
158 2ee7_A Sperm flagellar protein 42.7 11 0.00036 26.0 1.6 35 57-94 10-44 (127)
159 2hnh_A DNA polymerase III alph 42.5 20 0.00067 32.0 3.7 47 24-70 829-885 (910)
160 1le8_B Mating-type protein alp 42.3 6.6 0.00022 24.4 0.5 14 59-72 9-22 (83)
161 3k2a_A Homeobox protein MEIS2; 42.1 8.8 0.0003 22.9 1.0 10 79-88 45-54 (67)
162 1hc8_A Ribosomal protein L11; 41.8 31 0.001 21.5 3.6 35 38-72 8-48 (76)
163 2ly9_A Zinc fingers and homeob 41.8 11 0.00039 22.5 1.5 10 79-88 50-59 (74)
164 1x2n_A Homeobox protein pknox1 41.1 15 0.00052 21.9 2.0 16 57-72 12-27 (73)
165 1gks_A Cytochrome C551; haloph 41.0 18 0.00061 21.3 2.3 17 57-73 60-76 (78)
166 3doa_A Fibrinogen binding prot 40.3 16 0.00053 28.0 2.4 27 25-51 189-217 (288)
167 2zkr_i 60S ribosomal protein L 40.2 39 0.0013 24.2 4.4 38 36-73 73-118 (165)
168 2d0s_A Cytochrome C, cytochrom 40.1 21 0.00072 20.8 2.6 17 57-73 61-77 (79)
169 3bq0_A POL IV, DBH, DNA polyme 40.1 14 0.00048 28.6 2.2 35 30-65 181-215 (354)
170 1b72_B Protein (PBX1); homeodo 39.6 14 0.00049 22.7 1.8 10 79-88 48-57 (87)
171 1kx2_A Mono-heme C-type cytoch 39.6 21 0.00072 21.2 2.5 17 57-73 63-79 (81)
172 3iwf_A Transcription regulator 39.2 15 0.00051 24.0 1.9 23 29-51 40-62 (107)
173 4dez_A POL IV 1, DNA polymeras 38.4 14 0.00048 28.6 1.9 36 29-65 179-214 (356)
174 1cc5_A Cytochrome C5; electron 37.9 24 0.00081 21.3 2.6 16 58-73 67-82 (83)
175 3iz5_J 60S ribosomal protein L 37.9 82 0.0028 22.5 5.8 37 37-73 75-119 (166)
176 3nau_A Zinc fingers and homeob 37.7 5.9 0.0002 24.4 -0.3 28 59-87 29-56 (66)
177 2da3_A Alpha-fetoprotein enhan 37.4 6.2 0.00021 24.0 -0.2 28 59-87 42-69 (80)
178 1yub_A Ermam, rRNA methyltrans 37.3 19 0.00064 25.9 2.3 30 44-73 211-240 (245)
179 1bgx_T TAQ DNA polymerase; DNA 36.5 9.5 0.00032 33.6 0.7 18 32-49 195-212 (832)
180 2bgw_A XPF endonuclease; hydro 35.9 15 0.00053 26.4 1.7 21 29-49 195-215 (219)
181 3im1_A Protein SNU246, PRE-mRN 35.8 12 0.00042 28.7 1.2 44 29-73 158-212 (328)
182 1b22_A DNA repair protein RAD5 35.7 19 0.00064 24.1 2.0 20 29-48 59-78 (114)
183 1c75_A Cytochrome C-553; heme, 35.6 28 0.00096 19.9 2.6 21 53-73 49-69 (71)
184 2fmp_A DNA polymerase beta; nu 35.6 15 0.00052 28.7 1.7 21 29-49 58-78 (335)
185 3fgx_A Rbstp2171; structural g 35.3 16 0.00055 24.9 1.6 46 14-59 68-114 (114)
186 3rkq_A Homeobox protein NKX-2. 35.2 7.2 0.00025 22.0 -0.2 29 59-88 27-55 (58)
187 1du6_A PBX1, homeobox protein 34.8 8.7 0.0003 22.4 0.1 29 59-88 31-59 (64)
188 2c8m_A Lipoate-protein ligase 34.8 22 0.00074 26.4 2.4 41 40-84 214-254 (262)
189 3dr0_A Cytochrome C6; photosyn 34.6 13 0.00044 22.0 0.9 17 57-73 70-86 (93)
190 1xmk_A Double-stranded RNA-spe 34.5 14 0.00046 23.3 1.0 25 28-52 15-39 (79)
191 2zxy_A Cytochrome C552, cytoch 34.3 22 0.00076 20.7 2.0 17 57-73 69-85 (87)
192 1c53_A Cytochrome C553; electr 34.0 22 0.00076 20.8 1.9 17 57-73 62-78 (79)
193 2exv_A Cytochrome C-551; alpha 33.8 30 0.001 20.1 2.5 20 54-73 61-80 (82)
194 3osn_A DNA polymerase IOTA; ho 33.7 14 0.00047 29.7 1.2 35 30-65 236-270 (420)
195 2ihm_A POL MU, DNA polymerase 33.6 17 0.00059 28.7 1.7 22 29-50 62-83 (360)
196 1dgs_A DNA ligase; AMP complex 33.2 11 0.00038 32.6 0.6 34 32-65 445-478 (667)
197 2w9m_A Polymerase X; SAXS, DNA 33.0 11 0.00039 31.4 0.6 44 29-73 132-175 (578)
198 3ph2_B Cytochrome C6; photosyn 32.9 30 0.001 20.1 2.4 17 57-73 64-80 (86)
199 3f2b_A DNA-directed DNA polyme 32.6 17 0.00057 33.1 1.6 46 25-70 964-1015(1041)
200 2d5v_A Hepatocyte nuclear fact 32.3 12 0.0004 26.1 0.5 18 56-73 101-118 (164)
201 1ayg_A Cytochrome C-552; elect 31.8 32 0.0011 20.1 2.4 20 54-73 59-78 (80)
202 2dmn_A Homeobox protein TGIF2L 31.6 39 0.0013 20.8 2.8 19 55-73 10-28 (83)
203 2owo_A DNA ligase; protein-DNA 31.5 19 0.00066 31.1 1.8 36 31-66 449-484 (671)
204 3dmi_A Cytochrome C6; electron 31.2 33 0.0011 20.0 2.4 16 58-73 66-81 (88)
205 2zet_C Melanophilin; complex, 30.9 55 0.0019 22.9 3.9 21 53-73 11-31 (153)
206 3ivp_A Putative transposon-rel 30.9 52 0.0018 21.0 3.5 20 34-53 50-69 (126)
207 1mms_A Protein (ribosomal prot 30.5 64 0.0022 22.4 4.1 37 37-73 71-113 (140)
208 2ce0_A Cytochrome C6; chloropl 30.3 11 0.00039 23.1 0.1 17 57-73 77-93 (105)
209 2k9n_A MYB24; R2R3 domain, DNA 30.2 66 0.0022 20.5 3.9 42 37-82 32-75 (107)
210 1a56_A C-551, ferricytochrome 29.9 25 0.00086 20.5 1.7 17 57-73 63-79 (81)
211 1au7_A Protein PIT-1, GHF-1; c 29.7 14 0.00047 25.5 0.5 16 58-73 93-108 (146)
212 1jms_A Terminal deoxynucleotid 29.5 22 0.00076 28.4 1.7 23 29-51 81-103 (381)
213 1cno_A Cytochrome C552; electr 29.4 38 0.0013 20.0 2.5 17 57-73 65-81 (87)
214 1gdv_A Cytochrome C6; RED ALGA 29.2 38 0.0013 19.5 2.4 16 58-73 64-79 (85)
215 1e3o_C Octamer-binding transcr 29.2 14 0.00048 25.7 0.5 16 58-73 107-122 (160)
216 2xsd_C POU domain, class 3, tr 29.1 14 0.00048 26.0 0.5 16 58-73 105-120 (164)
217 3cu4_A Cytochrome C family pro 29.0 38 0.0013 19.8 2.4 16 58-73 67-82 (85)
218 1dd4_C 50S ribosomal protein L 28.9 27 0.00092 19.3 1.5 24 56-81 10-33 (40)
219 1f1f_A Cytochrome C6; heme, pr 28.9 38 0.0013 19.8 2.4 17 57-73 67-83 (89)
220 4f4y_A POL IV, DNA polymerase 28.6 49 0.0017 25.8 3.6 36 29-65 180-215 (362)
221 3d1n_I POU domain, class 6, tr 28.4 28 0.00095 23.8 1.9 17 57-73 98-114 (151)
222 1x41_A Transcriptional adaptor 28.4 58 0.002 18.7 3.1 31 49-82 1-31 (60)
223 2llk_A Cyclin-D-binding MYB-li 28.2 38 0.0013 20.9 2.3 30 49-82 16-45 (73)
224 3psf_A Transcription elongatio 27.8 15 0.00051 33.4 0.5 37 9-47 695-736 (1030)
225 2m0c_A Homeobox protein arista 27.7 12 0.0004 22.4 -0.2 28 60-88 35-62 (75)
226 3eyi_A Z-DNA-binding protein 1 27.5 23 0.00078 22.2 1.2 26 29-54 15-40 (72)
227 1wve_C 4-cresol dehydrogenase 27.4 55 0.0019 19.1 3.0 17 57-73 56-72 (80)
228 3mab_A Uncharacterized protein 26.9 64 0.0022 20.7 3.3 21 30-51 6-26 (93)
229 3b0x_A DNA polymerase beta fam 26.9 28 0.00094 29.0 1.9 43 30-73 130-172 (575)
230 2cuf_A FLJ21616 protein; homeo 26.4 11 0.00038 23.9 -0.5 11 79-89 66-76 (95)
231 1vqz_A Lipoate-protein ligase, 26.3 49 0.0017 25.7 3.2 44 40-88 213-256 (341)
232 4dpp_A DHDPS 2, dihydrodipicol 26.1 1E+02 0.0035 24.4 5.0 60 37-99 295-357 (360)
233 3dp5_A OMCF, cytochrome C fami 26.1 43 0.0015 20.7 2.4 16 58-73 81-96 (99)
234 1jr2_A Uroporphyrinogen-III sy 26.0 56 0.0019 24.1 3.3 31 31-63 115-145 (286)
235 1cch_A Cytochrome C551; electr 25.7 46 0.0016 19.1 2.3 20 54-73 61-80 (82)
236 2da6_A Hepatocyte nuclear fact 25.2 34 0.0012 22.6 1.8 30 38-72 15-44 (102)
237 2zzs_A Cytochrome C554; C-type 25.1 49 0.0017 20.1 2.5 17 57-73 85-101 (103)
238 2hue_C Histone H4; mini beta s 25.1 74 0.0025 19.7 3.3 33 31-66 6-38 (84)
239 3i5g_C Myosin catalytic light 24.9 47 0.0016 22.1 2.5 16 57-72 1-16 (159)
240 3cp5_A Cytochrome C; electron 24.7 1E+02 0.0036 19.1 4.1 22 52-73 98-119 (124)
241 4hl7_A Naprtase, nicotinate ph 24.4 75 0.0026 26.1 4.0 35 39-73 303-341 (446)
242 1w2l_A Cytochrome oxidase subu 24.4 41 0.0014 20.1 2.0 17 57-73 81-97 (99)
243 1zbd_B Rabphilin-3A; G protein 24.3 41 0.0014 23.0 2.1 22 52-73 3-24 (134)
244 1whz_A Hypothetical protein; a 24.1 37 0.0013 20.0 1.7 17 35-51 47-63 (70)
245 3kkc_A TETR family transcripti 24.1 30 0.001 22.4 1.4 28 32-59 26-53 (177)
246 3apt_A Methylenetetrahydrofola 23.9 15 0.00051 28.4 -0.3 46 1-48 209-261 (310)
247 2lmt_A Calmodulin-related prot 23.8 39 0.0013 21.8 1.9 17 56-72 1-17 (148)
248 2iu5_A DHAS, YCEG, HTH-type dh 23.7 36 0.0012 22.6 1.7 32 33-64 28-60 (195)
249 1x2m_A LAG1 longevity assuranc 23.5 15 0.00052 22.2 -0.2 29 58-87 25-53 (64)
250 2r6f_A Excinuclease ABC subuni 23.2 50 0.0017 29.8 3.0 31 40-70 338-368 (972)
251 2zon_G Cytochrome C551; nitrit 22.9 56 0.0019 19.1 2.4 16 58-73 69-84 (87)
252 3a4c_A DNA replication factor 22.7 37 0.0013 22.8 1.5 41 42-89 37-79 (106)
253 3lfp_A CSP231I C protein; tran 22.4 1.2E+02 0.0042 18.2 4.0 23 35-57 44-66 (98)
254 1qyi_A ZR25, hypothetical prot 22.3 68 0.0023 25.4 3.3 33 40-72 25-60 (384)
255 1t94_A Polymerase (DNA directe 22.3 40 0.0014 27.1 2.0 26 30-59 284-309 (459)
256 3j21_H 50S ribosomal protein L 22.1 1.2E+02 0.004 21.6 4.3 36 38-73 71-112 (164)
257 2d9a_A B-MYB, MYB-related prot 22.1 96 0.0033 17.5 3.2 31 49-82 1-31 (60)
258 3ppb_A Putative TETR family tr 22.1 35 0.0012 22.2 1.4 26 32-57 23-48 (195)
259 3qkx_A Uncharacterized HTH-typ 22.1 35 0.0012 22.1 1.4 28 32-59 22-49 (188)
260 3e7l_A Transcriptional regulat 21.9 51 0.0017 18.9 2.0 24 30-53 38-61 (63)
261 2yfr_A Levansucrase, inulosucr 21.8 41 0.0014 28.6 2.0 60 32-112 32-91 (571)
262 3r8s_Y 50S ribosomal protein L 21.7 37 0.0013 20.3 1.3 51 56-117 6-56 (63)
263 4fxe_A Antitoxin RELB; toxin/a 21.7 27 0.00094 21.8 0.7 15 39-53 14-28 (79)
264 2ve8_A FTSK, DNA translocase F 21.6 41 0.0014 21.0 1.5 24 25-48 25-48 (73)
265 3n8i_A Low molecular weight ph 21.4 91 0.0031 21.4 3.5 28 38-65 56-83 (157)
266 1sgm_A Putative HTH-type trans 21.4 39 0.0013 21.9 1.5 33 32-64 20-54 (191)
267 3jvi_A Protein tyrosine phosph 21.4 92 0.0031 21.4 3.5 31 35-65 49-82 (161)
268 3nrg_A TETR family transcripti 21.3 48 0.0016 22.0 2.0 33 32-64 27-60 (217)
269 2cqx_A LAG1 longevity assuranc 21.2 16 0.00054 22.2 -0.5 28 59-87 34-61 (72)
270 2ftc_G L11MT, MRP-L11, 39S rib 21.2 1.6E+02 0.0055 20.4 4.8 36 37-72 72-113 (145)
271 3m5v_A DHDPS, dihydrodipicolin 21.1 1.4E+02 0.0049 22.4 4.9 37 37-73 255-295 (301)
272 1b0n_A Protein (SINR protein); 21.1 72 0.0025 19.4 2.7 18 36-53 42-59 (111)
273 1jko_C HIN recombinase, DNA-in 21.0 23 0.0008 18.4 0.3 21 30-50 27-47 (52)
274 3pz6_A Leurs, leucyl-tRNA synt 20.8 51 0.0017 26.0 2.3 20 32-51 230-249 (311)
275 1j03_A Putative steroid bindin 20.7 1.2E+02 0.0041 19.5 3.8 31 43-73 56-89 (102)
276 2ziu_A MUS81 protein; helix-ha 20.5 40 0.0014 25.5 1.6 22 28-49 237-258 (311)
277 3os4_A Naprtase, nicotinate ph 20.5 99 0.0034 25.0 4.0 35 39-73 293-331 (407)
278 3qqa_A CMER; alpha-helical, he 20.5 56 0.0019 21.6 2.2 28 33-60 34-61 (216)
279 2din_A Cell division cycle 5-l 20.5 1E+02 0.0034 17.8 3.1 24 50-73 3-26 (66)
280 3fst_A 5,10-methylenetetrahydr 20.2 28 0.00095 27.0 0.6 46 1-48 212-264 (304)
No 1
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.9e-48 Score=283.01 Aligned_cols=118 Identities=86% Similarity=1.306 Sum_probs=115.9
Q ss_pred CCCCCccccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCC
Q 033487 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIP 80 (118)
Q Consensus 1 ~~~~~~~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip 80 (118)
|+++.+|+|+||+||+||+||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++|.+|.+|
T Consensus 1 ~~~~~~~~~~~m~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 1 MSLIAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp CCCCTTCSCCCCCCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred CCcccHHHHHHHHHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998789999
Q ss_pred cchhccccccCCCccceeehhhHHHHHHHHHHHHHhCC
Q 033487 81 DWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118 (118)
Q Consensus 81 ~w~~nr~kd~~tg~~~h~i~~dL~~~~~~dI~rl~~I~ 118 (118)
+||+|||||++||++.|+|++||++++++||+||++|+
T Consensus 81 ~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~ 118 (152)
T 3iz6_M 81 DWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIR 118 (152)
T ss_dssp CCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhh
Confidence 99999999999999999999999999999999999985
No 2
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=4.7e-48 Score=281.03 Aligned_cols=118 Identities=64% Similarity=1.051 Sum_probs=113.9
Q ss_pred CCCCCcc--ccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 033487 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK 78 (118)
Q Consensus 1 ~~~~~~~--~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ 78 (118)
|+++..+ +|+||+||+||+||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++|.+|.
T Consensus 1 ~~~~~~~~~~~~~~~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ 80 (146)
T 3u5c_S 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYK 80 (146)
T ss_dssp -CCCCCCCSCCCSSBCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTT
T ss_pred CCccCCCHHHhhhhhhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccC
Confidence 7888666 89999999999999999999999999999999999999999999999999999999999999999987899
Q ss_pred CCcchhccccccCCCccceeehhhHHHHHHHHHHHHHhCC
Q 033487 79 IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118 (118)
Q Consensus 79 ip~w~~nr~kd~~tg~~~h~i~~dL~~~~~~dI~rl~~I~ 118 (118)
||+||+|||||++||++.|+||+||++++++||+||++|+
T Consensus 81 iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~ 120 (146)
T 3u5c_S 81 IPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120 (146)
T ss_dssp CCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhc
Confidence 9999999999999999999999999999999999999985
No 3
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=7.2e-47 Score=277.08 Aligned_cols=118 Identities=52% Similarity=0.852 Sum_probs=114.6
Q ss_pred CCCCCcc--ccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCcc
Q 033487 1 MSLVANE--DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFK 78 (118)
Q Consensus 1 ~~~~~~~--~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ 78 (118)
|+++.++ +|+||+||+||+||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|+++|++|.+|.
T Consensus 1 m~~~~~~~~~f~~m~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~ 80 (155)
T 2xzm_M 1 MSFVIEKESDFKYIHRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHG 80 (155)
T ss_dssp CCCCSSTTTSSCSCCEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHC
T ss_pred CCccccchHhhhhhHheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccC
Confidence 7888666 89999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CCcchhccccccCCCccceeehhhHHHHHHHHHHHHHhCC
Q 033487 79 IPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118 (118)
Q Consensus 79 ip~w~~nr~kd~~tg~~~h~i~~dL~~~~~~dI~rl~~I~ 118 (118)
+|+||+|||||++||++.|+||+||++++++||+||++|+
T Consensus 81 iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~ 120 (155)
T 2xzm_M 81 IPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIK 120 (155)
T ss_dssp CCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhc
Confidence 9999999999999999999999999999999999999985
No 4
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-46 Score=274.18 Aligned_cols=112 Identities=38% Similarity=0.760 Sum_probs=109.2
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcchhcc
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNR 86 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr 86 (118)
|||+||+||+||+||++|+|.+|||+|||||+++|..||+++||||++++++||++|+++|+++|++|.+|.+|+||+||
T Consensus 2 ~~~~~m~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr 81 (148)
T 3j20_O 2 ANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNR 81 (148)
T ss_dssp CCBCSCEECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSE
T ss_pred hhhhHhHHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999987668899999999
Q ss_pred ccccCCCccceeehhhHHHHHHHHHHHHHhCC
Q 033487 87 QKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118 (118)
Q Consensus 87 ~kd~~tg~~~h~i~~dL~~~~~~dI~rl~~I~ 118 (118)
|||++||++.|+||+||++++++||+||++|+
T Consensus 82 ~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~ 113 (148)
T 3j20_O 82 PKDYETGRDLHLITAKLDMAIREDIMRLRRIR 113 (148)
T ss_dssp EEETTTEEEECCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCceeEEechHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999986
No 5
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=99.96 E-value=2.1e-29 Score=179.06 Aligned_cols=85 Identities=25% Similarity=0.388 Sum_probs=82.0
Q ss_pred chhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcchhccccccC
Q 033487 12 ILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYK 91 (118)
Q Consensus 12 mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~kd~~ 91 (118)
|+||+||+||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|++ +|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~--~~-------------- 64 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TW-------------- 64 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT--TS--------------
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH--hC--------------
Confidence 89999999999999999999999999999999999999999999999999999999999997 57
Q ss_pred CCccceeehhhHHHHHHHHHHHHHhCC
Q 033487 92 DGKYSQVVSNALDMKLRDDLERLKKIR 118 (118)
Q Consensus 92 tg~~~h~i~~dL~~~~~~dI~rl~~I~ 118 (118)
+||+||++++++||+||++|+
T Consensus 65 ------~ve~dLrr~~~~nIkRL~~I~ 85 (126)
T 2vqe_M 65 ------KLEGELRAEVAANIKRLMDIG 85 (126)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTT
T ss_pred ------cchhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999985
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=99.95 E-value=3.9e-28 Score=169.97 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=79.9
Q ss_pred hhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcchhccccccCC
Q 033487 13 LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKD 92 (118)
Q Consensus 13 vrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~kd~~t 92 (118)
.||+||+||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|+++|+ +|
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~---~~--------------- 62 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA---KF--------------- 62 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHS---SS---------------
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHH---Hh---------------
Confidence 489999999999999999999999999999999999999999999999999999999995 48
Q ss_pred CccceeehhhHHHHHHHHHHHHHhCC
Q 033487 93 GKYSQVVSNALDMKLRDDLERLKKIR 118 (118)
Q Consensus 93 g~~~h~i~~dL~~~~~~dI~rl~~I~ 118 (118)
.|++||++++++||+||++|+
T Consensus 63 -----~ie~dLr~~~~~dI~RL~~I~ 83 (114)
T 3r8n_M 63 -----VVEGDLRREISMSIKRLMDLG 83 (114)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHT
T ss_pred -----cchHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999985
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.88 E-value=1.6e-24 Score=156.79 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCCccccc------cchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033487 3 LVANEDFQ------HILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVV 70 (118)
Q Consensus 3 ~~~~~~~~------~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~ 70 (118)
....++|+ ||+||+|||||++|.|.+|||+|||||+.+|.+||+++|| +++++++||++|+++|+++
T Consensus 31 ~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 31 APKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp ----------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS
T ss_pred cCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH
Confidence 33446788 8999999999999999999999999999999999999999 7999999999999999865
No 8
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=97.30 E-value=0.00019 Score=59.64 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=45.9
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
....|....+.+||..+|.+||+.+|++|++++++|+.+|+.+|.+++.+
T Consensus 254 ~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (471)
T 1mu5_A 254 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 303 (471)
T ss_dssp BHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHH
T ss_pred chHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHh
Confidence 44556667899999999999999999999999999999999999999996
No 9
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=96.38 E-value=0.0038 Score=48.43 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=46.4
Q ss_pred CCeehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|.+.+.
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMV 207 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 477788777 579999999999999999999999999999999999988875
No 10
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.31 E-value=0.0042 Score=48.04 Aligned_cols=51 Identities=27% Similarity=0.229 Sum_probs=45.8
Q ss_pred CCeehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..+.++||++|+.+|.+.+.
T Consensus 149 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (268)
T 1k82_A 149 KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIK 202 (268)
T ss_dssp CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 467788777 578999999999999999999999999999999998877765
No 11
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=96.30 E-value=0.0042 Score=47.86 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=44.6
Q ss_pred Ceehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 23 ~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
+.+|..+| +-|-|||.-.|.++|=.+||+|..+.++||++|+.+|.+.+.
T Consensus 150 ~~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (262)
T 1k3x_A 150 NRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALL 202 (262)
T ss_dssp TSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 46777777 456999999999999999999999999999999999887775
No 12
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=96.26 E-value=0.0048 Score=47.69 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=46.0
Q ss_pred CCeehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..+.++||++|+++|.+.+.+
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 456788777 5789999999999999999999999999999999988777653
No 13
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=96.23 E-value=0.005 Score=47.64 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=45.5
Q ss_pred CCeehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.+.+|.-+| +-|-|||.-.|.++|=.+||+|..+.++||++|+.+|.+.+.
T Consensus 152 ~~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 205 (271)
T 2xzf_A 152 STKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSII 205 (271)
T ss_dssp CCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHH
T ss_pred CCccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 467788777 578999999999999999999999999999999998877665
No 14
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=96.22 E-value=0.0052 Score=48.39 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=46.4
Q ss_pred Ceehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 23 ~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+.+|..+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|.+++.+
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~ 227 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRD 227 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHH
Confidence 45677777 5799999999999999999999999999999999999999874
No 15
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=96.21 E-value=0.0053 Score=48.57 Aligned_cols=51 Identities=27% Similarity=0.277 Sum_probs=44.9
Q ss_pred CCeehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 22 GKQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 22 ~~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.+.+|..+| +-|-|||.-.|.++|=.+||+|..++++||++|+++|.+.+.
T Consensus 167 ~~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~ 220 (310)
T 3twl_A 167 KKITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIK 220 (310)
T ss_dssp CCSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 467787777 468999999999999999999999999999999998866653
No 16
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=96.08 E-value=0.006 Score=47.89 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=45.7
Q ss_pred CCeehhhhh---hh-hcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 22 GKQKIMFAL---TS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 22 ~~K~v~~aL---t~-IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.+.+|.-+| +- |-|||.-.|.++|=.+||+|..++++||++|+++|.+.+.
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK 207 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 567787777 35 8999999999999999999999999999999999888765
No 17
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=94.89 E-value=0.028 Score=43.20 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=51.5
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+.|.++++.+ .....|++..+|..+ |.+...+.++++.+||+++.|+.+||-+|..+|.+++++
T Consensus 206 ~~~~~~v~~~--F~~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 206 PGLFRLVEAA--FGKRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHHHH--TSSTTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHH--HhcCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 3466666642 445689999999775 456778889999999999999999999999999999874
No 18
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=94.22 E-value=0.074 Score=44.76 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=44.0
Q ss_pred hhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
..|.-..+-++|.++|..||+.+|+++++++++|+.+++..|..++.+
T Consensus 255 ~~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~ 302 (530)
T 2zbk_B 255 KEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 302 (530)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHH
T ss_pred HhhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHh
Confidence 356667899999999999999999999999999999999999999985
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.19 E-value=0.024 Score=35.49 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.8
Q ss_pred cccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 17 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 17 g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
|.-+..++.....|..|.|||+.+|..|++.+|
T Consensus 13 ~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 13 GLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp ----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 445666777888999999999999999999976
No 20
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=93.17 E-value=0.096 Score=39.55 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=45.5
Q ss_pred ccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 8 ~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.|..+++.+ .-.-.|++..+|..+++ .++++.+|++|+.|+.+||-+|..+|.+.++
T Consensus 193 ~~~~~v~~~--F~~rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 193 VLSRITTEA--FNQRRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp HHHHHHHHH--HHTTTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhCCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 355555543 34578899999987654 5678999999999999999999999999885
No 21
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.90 E-value=0.039 Score=33.65 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=31.2
Q ss_pred hhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033487 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L 67 (118)
-.|..|.|||++++..+++.+| .-..+...|.+|+..+
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fg--s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 3588999999999999999877 3456777888888766
No 22
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=92.82 E-value=0.038 Score=42.50 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=47.5
Q ss_pred ccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 8 ~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.|.++++.+ .....|++..+|..+++ ..+++.+||++++|+.+||-+|..+|.+++++
T Consensus 217 ~~~~~v~~~--F~~rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 217 VLGEVVTAA--FSQRRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HHHHHHHHH--GGGTTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhccChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 466777663 44568999999988754 35678999999999999999999999999874
No 23
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=92.49 E-value=0.13 Score=31.15 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=37.4
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCC-C------C--CCcCCCCCHHHHHHHHHHHhCC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADV-D------M--NKRAGELSAAELDNLMVVVANP 74 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi-~------~--~~r~~~Ls~~qi~~L~~~i~~~ 74 (118)
......|+.|.|||..+|..|++.+|= . + -..+..+.+.....|..+++++
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 345678999999999999999998751 1 1 1345556777778888888763
No 24
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.59 E-value=0.21 Score=33.19 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=39.6
Q ss_pred CCCeehhhhhhhhcccCcchHHHHHHHhCCC---CCCcCCCCCHHHHHHHHHHHhC
Q 033487 21 DGKQKIMFALTSIKGIGRRLANIVCKKADVD---MNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 21 ~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~---~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+-|..=.-.|+.++|||+.+|..|.+.=++. .-.++.-+.+..+++|..+++.
T Consensus 19 diNtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 19 DLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp ETTTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred eCCcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 3344445678999999999999999953332 2235666899999999999874
No 25
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=91.23 E-value=0.096 Score=33.38 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=36.9
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCC-------CC--CCcCCCCCHHHHHHHHHHHhCC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADV-------DM--NKRAGELSAAELDNLMVVVANP 74 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi-------~~--~~r~~~Ls~~qi~~L~~~i~~~ 74 (118)
..+..+|+.|.|||+.+|..|++.+|= ++ -..+..+.+....+|..++++|
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 346688999999999999999998761 11 1234446666677788888763
No 26
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=91.08 E-value=0.11 Score=33.44 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=23.0
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
..+..+|+.|.|||+.+|..|++.+|
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 34668899999999999999999886
No 27
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=90.62 E-value=0.24 Score=37.13 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=43.8
Q ss_pred ccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 8 ~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.|.++++.+ ..-..|++..+|... .++.+||+|++|+.+||-+|..+|.+++++
T Consensus 193 ~~~~~v~~~--F~~rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 193 NYKKFLTKI--FQNRRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHHHHHH--HSSTTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HhCcChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 355666552 444678888888765 789999999999999999999999999975
No 28
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=90.58 E-value=0.15 Score=38.63 Aligned_cols=57 Identities=11% Similarity=0.171 Sum_probs=44.5
Q ss_pred ccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 8 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 8 ~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.|.++++.+ .....|++..+|..+++ ...++.+||++++|+.+||-+|..+|.++++
T Consensus 199 ~~~~~v~~~--F~~rrK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 255 (255)
T 3tqs_A 199 QLSHVVKEA--FSYRRKTVGNALKKLIN------PSQWPLLEINPQLRPQELTVEDFVKISNILN 255 (255)
T ss_dssp HHHHHHHHH--HHSTTSCHHHHTTTTCC------GGGTGGGTCCTTSCGGGSCHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHccChHHHHHHhhhCC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHhC
Confidence 466666653 34467899999987753 1357899999999999999999999998763
No 29
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=90.41 E-value=0.31 Score=34.37 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCCCeehhhhhhhhcccCcchHHHHHHHhC---CCCCCcCCCCCHHHHHHHHHHHhCCCCccC--Ccchhc
Q 033487 20 VDGKQKIMFALTSIKGIGRRLANIVCKKAD---VDMNKRAGELSAAELDNLMVVVANPRQFKI--PDWFLN 85 (118)
Q Consensus 20 i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg---i~~~~r~~~Ls~~qi~~L~~~i~~~~~~~i--p~w~~n 85 (118)
|+=|..=.-.|+.+.|||+++|.+|.+.-. ++.-+.+..+++.+.+.|.+..++ +.+ |+=.+|
T Consensus 55 IniNtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~---~tv~~p~~~~~ 122 (134)
T 1s5l_U 55 IDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH---FTVTEVETALV 122 (134)
T ss_dssp EETTTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTT---EECCCCCHHHH
T ss_pred eeCcccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcc---eeecCchHHHh
Confidence 333444456688999999999999996432 333456777899999999999885 443 444444
No 30
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=89.98 E-value=0.18 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=31.0
Q ss_pred CCCeehhhhhhhhcccCcchHHHHHHHhCCCC---CCcCCCCCHHHHHHHHH
Q 033487 21 DGKQKIMFALTSIKGIGRRLANIVCKKADVDM---NKRAGELSAAELDNLMV 69 (118)
Q Consensus 21 ~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~---~~r~~~Ls~~qi~~L~~ 69 (118)
+-|..-.-.|..+.|||+.+|..|.+...+.. -..+..++....++|..
T Consensus 20 diN~a~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 20 SLNEASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp ETTTCCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred ChhhCCHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHH
Confidence 33444455689999999999999999763322 12233445555555543
No 31
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=89.62 E-value=0.033 Score=45.12 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=36.5
Q ss_pred Ceehhhhh---hhhcccCcchHHHHHHHhCCCCCCcCCCCCHH
Q 033487 23 KQKIMFAL---TSIKGIGRRLANIVCKKADVDMNKRAGELSAA 62 (118)
Q Consensus 23 ~K~v~~aL---t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~ 62 (118)
+.+|..+| +-|-|||.-.|.++|=.+||+|..+.++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 57777777 57899999999999999999999999999987
No 32
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=87.60 E-value=0.088 Score=38.85 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=46.1
Q ss_pred hccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCC------------CCcCCCCCHHHHHHHHHHHhC
Q 033487 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDM------------NKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 15 I~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~------------~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
|.|..-...|.++..|.+|.|||+++|..|++.+|-+. -+++.-+.+.-.++|...+.+
T Consensus 59 l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 59 LYGFPDEENLALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp EEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 66666566777777899999999999999999988721 156666788888888888875
No 33
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=87.41 E-value=0.3 Score=37.89 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=50.6
Q ss_pred cccchhhccccCCCCeehhhhhhhhc---ccCcchHHHHHHHh-----CCCC--CCcCCCCCHHHHHHHHHHHhC
Q 033487 9 FQHILRVLNTNVDGKQKIMFALTSIK---GIGRRLANIVCKKA-----DVDM--NKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 9 ~~~mvrI~g~~i~~~K~v~~aLt~Iy---GIG~~~A~~Ic~~l-----gi~~--~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
|.++++.+ ..-..|++..+|.... |+.+..+.++++.+ |+++ ++|+.+||-+|..+|.+++.+
T Consensus 215 ~~~~v~~~--F~~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 215 FDDFLRAI--FQHRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp HHHHHHHH--HTTTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HccCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 56666652 3446799999998764 44566788899998 8999 999999999999999999864
No 34
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=85.80 E-value=0.13 Score=38.30 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=43.8
Q ss_pred hccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 033487 15 VLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 15 I~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~------------~r~~~Ls~~qi~~L~~~i~~ 73 (118)
|.|..-...|.++..|.+|.|||+++|..|++.+|-+.- +++.-+.+.--++|...+++
T Consensus 60 l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~ 130 (203)
T 1cuk_A 60 LYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKD 130 (203)
T ss_dssp EEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 666666667777778999999999999999998887321 45556677777777777754
No 35
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=85.11 E-value=0.37 Score=31.08 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=32.6
Q ss_pred CeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033487 23 KQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (118)
Q Consensus 23 ~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L 67 (118)
|-...-.|..|+|||++.+..|++.+| .-..+...|.+||..+
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~~Fg--Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSI 55 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHHHSS--CHHHHHHSCHHHHHHH
T ss_pred cccHHHHHHhCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHH
Confidence 444566789999999999999998765 3345666677777766
No 36
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=85.10 E-value=0.15 Score=38.31 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=47.5
Q ss_pred hhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCC------------CcCCCCCHHHHHHHHHHHhC
Q 033487 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMN------------KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 14 rI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~------------~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.++|..-...+.++.-|.++.|||+++|..|++.+|.+.- +++.-+.+.-.++|...++.
T Consensus 74 ~LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 74 TLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp EEEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred ceEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 3555555667777788999999999999999998887433 47777888888999888876
No 37
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=84.35 E-value=1.3 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=28.9
Q ss_pred hhhhhhhcccCcchHHHHHHHhC-------CCCCCcCCCCCHHHHHHHHH
Q 033487 27 MFALTSIKGIGRRLANIVCKKAD-------VDMNKRAGELSAAELDNLMV 69 (118)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~lg-------i~~~~r~~~Ls~~qi~~L~~ 69 (118)
.-.|+.|+|||+.+|..|++... +..-.++.-++...+++|.+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHH
Confidence 44589999999999999998762 12223344456666655544
No 38
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=83.72 E-value=0.67 Score=34.02 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=31.1
Q ss_pred ehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
...-.|.+++|||+.+|..||..+|. ++.- --|..+.++.+-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~---~vD~~v~Ri~~rl 156 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGY-FDLA---IIDRHIIDFMRRI 156 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTC-CSSC---CCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCC-CCcc---eecHHHHHHHHHc
Confidence 46677889999999999999987677 3322 2346666666555
No 39
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=81.84 E-value=1.9 Score=34.44 Aligned_cols=49 Identities=29% Similarity=0.451 Sum_probs=42.1
Q ss_pred CCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 22 ~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+++.+...|... +..+.+..+|+.+++ +++++.+|+++++.+|.+.+++
T Consensus 298 ~~~~~~~~l~~~--lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 298 GRQAVQTALADI--LPRRLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp CSSBHHHHHTTT--SCHHHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHH--hhHHHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 566666666543 778899999999999 9999999999999999999986
No 40
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=81.68 E-value=0.61 Score=35.23 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=30.3
Q ss_pred hhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033487 27 MFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (118)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L 67 (118)
...|..|.|||+.+|+.+++..| .-..+.+-|.+|+..+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHH
Confidence 46788999999999999999988 2233556677777665
No 41
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=81.52 E-value=1.8 Score=34.19 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=43.0
Q ss_pred CCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 22 ~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+++.+...|... +..+.+..+|+..|++ +.++.+|++++..+|.+.+++
T Consensus 279 ~~~~~~~~l~~~--lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 279 PKQMLKTILVRL--LPKKLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TTSBHHHHHTTT--SCHHHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHC
T ss_pred ccccHHHHhhhh--cCHHHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhc
Confidence 567788888775 7789999999999998 688999999999999999985
No 42
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=80.48 E-value=0.79 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=31.2
Q ss_pred ehhhhhh-hhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 25 KIMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 25 ~v~~aLt-~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
...-.|. +++|||+.+|..|+..+|. +...+ =|-.+.++.+-+.
T Consensus 121 ~~re~Ll~~LpGVG~KTA~~vL~~~g~-~~~~v---VDthv~Ri~~RlG 165 (214)
T 3fhf_A 121 VAREFLVRNIKGIGYKEASHFLRNVGY-DDVAI---IDRHILRELYENN 165 (214)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTC-CSCCC---CCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCC-CCccc---CcHHHHHHHHHcC
Confidence 3455677 9999999999999988776 43332 3466777666653
No 43
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=80.39 E-value=0.9 Score=33.97 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=28.6
Q ss_pred hhhhhh-hhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 26 IMFALT-SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 26 v~~aLt-~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
..-.|. +++|||+.+|..+|..+|..|-.. =|..+.++.+-+
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~----VDthv~Ri~~rl 169 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGVEDLAI----LDKHVLRLMKRH 169 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC----CCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCCCeee----ecHHHHHHHHHc
Confidence 455677 999999999999997777733221 235555555544
No 44
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=78.40 E-value=0.42 Score=36.41 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033487 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~ 66 (118)
..|..|.|||+++|..|++. ||..-..+..-+.+++..
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~-gf~sve~L~~a~~~eL~~ 52 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREA-GFESVEDVRGADQSALAD 52 (241)
T ss_dssp ---------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHc-CCCCHHHHHhCCHHHHHh
Confidence 36788999999999999988 776544443334444433
No 45
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=78.27 E-value=1.2 Score=32.90 Aligned_cols=31 Identities=6% Similarity=-0.110 Sum_probs=28.2
Q ss_pred HHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 43 IVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 43 ~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
++++.+|++|+.|+.+||-+|..+|.+.+++
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~ 241 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKL 241 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999998864
No 46
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=77.73 E-value=0.93 Score=35.87 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=26.3
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+|-.+ .|+|||+++|.++++..|
T Consensus 220 ~q~id~~~L~G~D~~~---------gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 220 EQFVDLCILLGSDYCE---------SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp HHHHHHHHHHCCSSSC---------CCTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCC---------CCCCccHHHHHHHHHHcC
Confidence 4566777778866543 368999999999999876
No 47
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=76.54 E-value=1.2 Score=32.49 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.3
Q ss_pred hhhhhhhhcccCcchHHHHHHHhC
Q 033487 26 IMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
....|+.|.|||+.+|..|++..|
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcC
Confidence 345788999999999999999987
No 48
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=75.63 E-value=3.4 Score=31.04 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=32.4
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
..+.-+|++++|||+++|.++.-.+= +-.++++..|.++|.+
T Consensus 22 ~~LI~~l~~LPGIG~KsA~RlA~hLL--------~~~~~~~~~La~al~~ 63 (212)
T 3vdp_A 22 AKLIEELSKLPGIGPKTAQRLAFFII--------NMPLDEVRSLSQAIIE 63 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHT--------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 35667899999999999999985442 2267888888888763
No 49
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=75.51 E-value=1.1 Score=33.41 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.5
Q ss_pred hhhhhhcccCcchHHHHHHHh
Q 033487 28 FALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~l 48 (118)
-.|++++|||+++|.+|+..+
T Consensus 123 ~~L~~vpGIG~KtA~rIi~el 143 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLEL 143 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHHH
Confidence 468999999999999999665
No 50
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=75.16 E-value=1.1 Score=37.57 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=23.9
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCCC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi~ 51 (118)
......|.+++|||+++|..|+..+|+.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~ 116 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGID 116 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCC
Confidence 4556778999999999999999987775
No 51
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.78 E-value=3.7 Score=25.84 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=25.7
Q ss_pred hcccCcchHHHH--HHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033487 33 IKGIGRRLANIV--CKKADVDMNKRAGELSAAELDNLMVV 70 (118)
Q Consensus 33 IyGIG~~~A~~I--c~~lgi~~~~r~~~Ls~~qi~~L~~~ 70 (118)
..|.-.....++ ++++||+. ..+.+||++|+.+....
T Consensus 23 ~kG~R~Fs~iql~RL~kLGI~k-tdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 23 VNGVREFSEIQLSRLKKLGIHK-TDPSTLTEEEVRKFARL 61 (71)
T ss_dssp SSSSCCCCHHHHHHHHHHTCCC-CSTTTCCHHHHHHHHHT
T ss_pred CCCeeecCHHHHHHHHHcCCCC-CCcccCCHHHHhhceec
Confidence 345443333333 57999995 78999999999887653
No 52
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.84 E-value=1.8 Score=34.15 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCeehhhhhhhhcccCcchHHHHHHHhCCCC
Q 033487 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDM 52 (118)
Q Consensus 22 ~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~ 52 (118)
..-++.-.|++|+|||+++|..+-+. ||..
T Consensus 90 ~~~p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 90 ESVPVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp TTHHHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred hhhHHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 33445555689999999999999877 8874
No 53
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=71.66 E-value=1.6 Score=32.17 Aligned_cols=41 Identities=17% Similarity=-0.014 Sum_probs=27.0
Q ss_pred hhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033487 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVV 70 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~ 70 (118)
..-.|..++|||+.+|..||-.+.=.|- ---|..+.++...
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a~~~~~----~~vD~~v~Ri~~r 159 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYACAKEV----MVVDKYSYLFLKK 159 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCSC----CCCCHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHCCCCc----cccCHHHHHHHHH
Confidence 4556899999999999999976532232 2234555555443
No 54
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=71.53 E-value=5 Score=30.49 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=33.0
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
..+.-+|++++|||+++|..+.-.+= +-.++++..|.++|.+
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL--------~~~~~~~~~La~al~~ 49 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLF--------EQPREDIERLASALLE 49 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHS--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHH--------cCCHHHHHHHHHHHHH
Confidence 56778899999999999999985542 2367888888888763
No 55
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=71.21 E-value=1.8 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=33.9
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
-|..-.|++.....+.++.+|+ .......|++++...|.+.+
T Consensus 7 ~lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 7 TLAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 4556669999999999999999 55556778999888887765
No 56
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=70.82 E-value=1.6 Score=34.85 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=26.0
Q ss_pred cccccchhhcccc-CCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTN-VDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~-i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+| +|. .|.|||+++|.++++..|
T Consensus 238 ~q~id~~~L~GsDy~p~---------GVpGIG~KtA~kLl~~~g 272 (363)
T 3ory_A 238 ENLIDIGILLGTDYNPD---------GFEGIGPKKALQLVKAYG 272 (363)
T ss_dssp HHHHHHHHHHCBTTBTT---------CSTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCC---------CCCCcCHHHHHHHHHHcC
Confidence 4566667777765 331 578999999999999987
No 57
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=70.24 E-value=0.9 Score=34.38 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred ehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHH
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNL 67 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L 67 (118)
.....|+.|.|||+.+|+.|++..|= -..+.+-|.+|+..+
T Consensus 170 ~~~s~L~~IpGIG~k~ak~Ll~~FGS--l~~i~~As~eeL~~V 210 (226)
T 3c65_A 170 MFHSVLDDIPGVGEKRKKALLNYFGS--VKKMKEATVEELQRA 210 (226)
T ss_dssp -------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHhCC--HHHHHhCCHHHHHHc
Confidence 34578899999999999999998762 222444455555544
No 58
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.16 E-value=2.1 Score=26.25 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=17.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 50 VDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 50 i~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.+|...-..+|.+|+..|+.++..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~ 29 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCR 29 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhc
Confidence 344444556788999999888875
No 59
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=69.77 E-value=1.9 Score=34.02 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.3
Q ss_pred hhhhhhhhcccCcchHHHHHHHhCCCC
Q 033487 26 IMFALTSIKGIGRRLANIVCKKADVDM 52 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~lgi~~ 52 (118)
....|++|+|||+++|..+-+. ||..
T Consensus 96 ~l~~l~~V~GiGpk~a~~l~~~-Gi~t 121 (335)
T 2fmp_A 96 SINFLTRVSGIGPSAARKFVDE-GIKT 121 (335)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHhCCCCCCHHHHHHHHHc-CCCC
Confidence 4466899999999999999888 9874
No 60
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=69.43 E-value=1.6 Score=31.83 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=19.5
Q ss_pred hhhhhhhhcccCcchHHHHHHHh
Q 033487 26 IMFALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~l 48 (118)
..-.|..++|||+.+|..|+-.+
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 45678999999999999998754
No 61
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=68.63 E-value=2.1 Score=31.36 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.1
Q ss_pred hhhhhhcccCcchHHHHHHHhC
Q 033487 28 FALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
-.|++++|||+++|.+|+..+.
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3589999999999999997773
No 62
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=68.48 E-value=2.1 Score=31.60 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=17.8
Q ss_pred hhhhhcccCcchHHHHHHHh
Q 033487 29 ALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~l 48 (118)
.|++++|||+++|.+|+..+
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998655
No 63
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=67.34 E-value=2.3 Score=31.41 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=28.2
Q ss_pred hhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
..-.|..++|||+.+|..|+-.+.=.|.. .-|..+.++..-+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a~~~~~~----~vD~~v~Rv~~rl 148 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLSLGKHFP----ILDGNVKRVLARC 148 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHHHCCSCC----CCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCCcc----eeCHHHHHHHHHH
Confidence 45678999999999999998754222222 2456666665554
No 64
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=67.15 E-value=2.3 Score=31.28 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=27.9
Q ss_pred hhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 26 IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
..-.|..++|||+.+|..|+-.+.=.|.. --|..+.++..-+
T Consensus 113 ~~~~L~~lpGIG~~TA~~il~~~~~~~~~----~vD~~v~Rv~~rl 154 (221)
T 1kea_A 113 NRKAILDLPGVGKYTCAAVMCLAFGKKAA----MVDANFVRVINRY 154 (221)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCCCC----CCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhcCCCcc----eecHHHHHHHHHH
Confidence 35678999999999999998764333322 2345566655544
No 65
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=67.06 E-value=2.3 Score=33.90 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=28.9
Q ss_pred hhhhhhhcccCcchHHHHHHHhCCCCC----CcCCCCCHHHHHHHH
Q 033487 27 MFALTSIKGIGRRLANIVCKKADVDMN----KRAGELSAAELDNLM 68 (118)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~lgi~~~----~r~~~Ls~~qi~~L~ 68 (118)
...|.+|+|||+++|..+-+. ||..- ++-+.|++.|..-|.
T Consensus 101 l~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 101 MKLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 356789999999999999877 88742 334566665544443
No 66
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=66.96 E-value=2.1 Score=31.86 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=23.5
Q ss_pred ehhhhhhhhcccCcchHHHHHHH-hCCCCCCcC
Q 033487 25 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRA 56 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~-lgi~~~~r~ 56 (118)
.+.-.|..++|||+.+|..|+-. +|-..-..+
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pv 167 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSV 167 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeC
Confidence 46667899999999999999975 454323344
No 67
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=66.67 E-value=2.3 Score=35.71 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=22.1
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCCC
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi~ 51 (118)
+.....|.+++|||+++|..|.+. |+.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 445667899999999999999986 554
No 68
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.29 E-value=1.9 Score=27.46 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=14.2
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 033487 55 RAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 55 r~~~Ls~~qi~~L~~~i~~ 73 (118)
+.+..|.+|+..|+.++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~ 34 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK 34 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHcc
Confidence 4556788888888888775
No 69
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=66.15 E-value=2.3 Score=31.59 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.3
Q ss_pred ehhhhhhhhcccCcchHHHHHHHh
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~l 48 (118)
.+.-.|+.++|||+.+|..||-..
T Consensus 143 e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 143 LVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh
Confidence 456778999999999999999754
No 70
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=65.92 E-value=2.4 Score=30.16 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=33.3
Q ss_pred cccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 9 ~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
.+++..+++-.+|.+. -.|.+++|||+.+|..++-- .++...++-= .|..+.+.-.++
T Consensus 88 Ak~i~~~a~~~vp~~~---~~L~~LpGVG~yTAdav~~F-~~~e~~~V~p-~D~~l~r~l~wl 145 (161)
T 4e9f_A 88 AKTIVKFSDEYLTKQW---KYPIELHGIGKYGNDSYRIF-CVNEWKQVHP-EDHKLNKYHDWL 145 (161)
T ss_dssp HHHHHHHHHHHHHSCC---SSGGGSTTCCHHHHHHHHHH-TSSCGGGCCC-CSHHHHHHHHHH
T ss_pred HHHHHHHhCCcCCCCh---hhhhcCCCchHHHHHHHHHH-HCCCCCCCCC-CcHHHHHHHHHH
Confidence 3455555555566553 46889999999999987643 3342222221 234455444444
No 71
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=65.70 E-value=2.9 Score=25.58 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.9
Q ss_pred hhhhhcccCcchHHHHHHHh
Q 033487 29 ALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~l 48 (118)
.|..+.|||+.+|.+|++.+
T Consensus 57 eL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 57 EIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 47789999999999998765
No 72
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=65.66 E-value=2.2 Score=31.68 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=20.5
Q ss_pred hhhhhhhhcccCcchHHHHHHH-hCC
Q 033487 26 IMFALTSIKGIGRRLANIVCKK-ADV 50 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~-lgi 50 (118)
..-.|..++|||+.+|..|+-. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 4677899999999999999865 454
No 73
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=65.60 E-value=2.5 Score=33.97 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.4
Q ss_pred hhhhhhhcccCcchHHHHHHHhCCCC
Q 033487 27 MFALTSIKGIGRRLANIVCKKADVDM 52 (118)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~lgi~~ 52 (118)
...|.+|+|||+++|..+-+. ||..
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~t 144 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRT 144 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCc
Confidence 456789999999999999887 8874
No 74
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=65.58 E-value=2.4 Score=31.60 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=23.4
Q ss_pred hhhhhhhhcccCcchHHHHHHH-hCCCCCCcCCC
Q 033487 26 IMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGE 58 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~-lgi~~~~r~~~ 58 (118)
+.-.|+.++|||+.+|..||-. +|-..-..+++
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD 170 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HHHHHHhCCCcCHHHHHHHHHHhCCCCCEEeccc
Confidence 4678999999999999999964 34332234443
No 75
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=65.21 E-value=2.4 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.7
Q ss_pred ehhhhhhhhcccCcchHHHHHHHh
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~l 48 (118)
.+.-.|+.++|||+.+|..||-.+
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 466789999999999999998764
No 76
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=64.89 E-value=2.4 Score=32.25 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.5
Q ss_pred ehhhhhhhhcccCcchHHHHHHHh
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~l 48 (118)
.+.-.|+.++|||+.+|..||-..
T Consensus 204 ~~~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 204 QAMKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHh
Confidence 356789999999999999999754
No 77
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=64.45 E-value=5.4 Score=32.21 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=28.6
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
-++.+.|||++++.++++.+||..---+..++..++.
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~ 290 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQ 290 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHH
Confidence 3578999999999999999999864444555666654
No 78
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.31 E-value=2.4 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (70)
T 2djn_A 13 IYSSFQLAALQRRFQK 28 (70)
T ss_dssp SSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcC
Confidence 4577777777777764
No 79
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=64.30 E-value=2.5 Score=32.45 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=21.1
Q ss_pred ehhhhhhhhcccCcchHHHHHHH-hC
Q 033487 25 KIMFALTSIKGIGRRLANIVCKK-AD 49 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~-lg 49 (118)
.+.-.|..++|||+.+|..||-. +|
T Consensus 207 e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 207 EAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 35677999999999999999975 46
No 80
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=64.18 E-value=2.4 Score=32.68 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=28.7
Q ss_pred ehhhhhhhhcccCcchHHHHHHH-hCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 25 KIMFALTSIKGIGRRLANIVCKK-ADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~-lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
...-.|..++|||+.+|..||-. +|-..-..+ |-.+.++...+
T Consensus 208 ~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv----D~~v~r~~~rl 251 (290)
T 3i0w_A 208 ECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV----DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC----CHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee----cHHHHHHHHHh
Confidence 45677899999999999999965 454323332 35555555444
No 81
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=63.58 E-value=2.5 Score=26.12 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (80)
T 2cue_A 13 SFTQEQIEALEKEFER 28 (80)
T ss_dssp CSCHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 4677777777777765
No 82
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=62.83 E-value=3.5 Score=26.00 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.7
Q ss_pred hhhhhcccCcchHHHHHHHhC
Q 033487 29 ALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lg 49 (118)
.|..+.|||..+|.+|++.+.
T Consensus 65 eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 65 DLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHh
Confidence 478899999999999988764
No 83
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=62.68 E-value=2 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHh
Q 033487 59 LSAAELDNLMVVVA 72 (118)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (118)
+|.+|+..|+.+++
T Consensus 4 ft~~Ql~~Le~~F~ 17 (56)
T 3a03_A 4 FSRSQVLELERRFL 17 (56)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 45555555555555
No 84
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.60 E-value=3.1 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=13.6
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 033487 55 RAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 55 r~~~Ls~~qi~~L~~~i~~ 73 (118)
+-...|.+|+..|+.++..
T Consensus 10 kr~~~t~~Ql~~Le~~F~~ 28 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQ 28 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhc
Confidence 3445688888888887775
No 85
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=60.68 E-value=2.8 Score=24.45 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.+++.
T Consensus 9 ~ft~~Q~~~Le~~F~~ 24 (61)
T 2hdd_A 9 AFSSEQLARLKREFNE 24 (61)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4567777777776664
No 86
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=60.33 E-value=3.1 Score=33.17 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=25.0
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+|-.++ |.|||+++|.++++..|
T Consensus 220 ~q~id~~~L~G~D~~d~---------IpGIG~KtA~kLl~~~g 253 (379)
T 1ul1_X 220 EQFVDLCILLGSDYCES---------IRGIGPKRAVDLIQKHK 253 (379)
T ss_dssp HHHHHHHHHHHCSSSCC---------CTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCcCCC---------CCCcCHHHHHHHHHHcC
Confidence 44556666677665443 58999999999998765
No 87
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=60.28 E-value=3.9 Score=30.64 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=21.9
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~L 59 (118)
.|..++|||+++|.+|.+.=.-.|-..+.+|
T Consensus 133 eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL 163 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEERKKRPFESFEDI 163 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHHHHHSCCCSHHHH
T ss_pred HHhcCCCcCHHHHHHHHHHHhcCCCCCHHHH
Confidence 4788999999999999965432454444444
No 88
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=60.28 E-value=3.3 Score=24.73 Aligned_cols=17 Identities=12% Similarity=0.263 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..+|.+|+..|+.++..
T Consensus 8 t~ft~~Q~~~Le~~F~~ 24 (68)
T 1yz8_P 8 THFTSQQLQQLEATFQR 24 (68)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 35788999999998886
No 89
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=60.25 E-value=2.3 Score=25.47 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..+|.+|+..|+.+++.
T Consensus 12 t~ft~~q~~~Le~~F~~ 28 (70)
T 2da1_A 12 TRITDDQLRVLRQYFDI 28 (70)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 35688888888888764
No 90
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=60.04 E-value=2.3 Score=25.60 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (70)
T 2cra_A 13 PYSKGQLRELEREYAA 28 (70)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4577777777777764
No 91
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=60.02 E-value=2.3 Score=25.54 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~q~~~Le~~F~~ 28 (70)
T 2e1o_A 13 RFSNDQTIELEKKFET 28 (70)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4677777777777764
No 92
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.95 E-value=2.3 Score=25.48 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~q~~~Le~~F~~ 28 (70)
T 2dmu_A 13 IFTDEQLEALENLFQE 28 (70)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4677777777777764
No 93
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.94 E-value=2.3 Score=26.12 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAI 28 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4567777777666664
No 94
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=59.77 E-value=2.4 Score=25.41 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~q~~~Le~~F~~ 28 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDA 28 (70)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4577777777777764
No 95
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=59.59 E-value=2.7 Score=26.33 Aligned_cols=15 Identities=7% Similarity=0.366 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|.+|+..|+.+++.
T Consensus 24 ft~~Ql~~Le~~f~~ 38 (80)
T 1wh5_A 24 FTAEQKERMLALAER 38 (80)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 677888877777764
No 96
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.94 E-value=2.5 Score=26.14 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 23 ~ft~~Q~~~Le~~F~~ 38 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEK 38 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3577777777777764
No 97
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=58.57 E-value=2.6 Score=24.51 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|.+|+..|+.++..
T Consensus 6 ft~~Q~~~Le~~F~~ 20 (60)
T 3a02_A 6 FTSFQLEELEKAFSR 20 (60)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHc
Confidence 455666666655553
No 98
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=58.53 E-value=3.2 Score=26.79 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=14.2
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 033487 55 RAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 55 r~~~Ls~~qi~~L~~~i~~ 73 (118)
+.+..|.+|+..|++.+..
T Consensus 14 k~k~~t~~Ql~~Le~~F~~ 32 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN 32 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHh
Confidence 4557788888888887775
No 99
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=58.37 E-value=9.8 Score=24.68 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=15.2
Q ss_pred hhhhcccCcchHHHHHHHhCCCC
Q 033487 30 LTSIKGIGRRLANIVCKKADVDM 52 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~ 52 (118)
|+.+++||++++..+ .++||..
T Consensus 6 L~~LPNiG~~~e~~L-~~vGI~s 27 (93)
T 3bqs_A 6 LSELPNIGKVLEQDL-IKAGIKT 27 (93)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCS
T ss_pred hhcCCCCCHHHHHHH-HHcCCCC
Confidence 677777777776654 6777763
No 100
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=58.37 E-value=3.4 Score=32.90 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred ehhhhhhhhcccCcchHHHHHHH
Q 033487 25 KIMFALTSIKGIGRRLANIVCKK 47 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~ 47 (118)
...-.|..++|||+.+|..||-.
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 56678899999999999999965
No 101
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=58.24 E-value=2.5 Score=27.40 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred cccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhCC---CCCCcCCCCCHHHHHHHHHHHhC
Q 033487 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV---DMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 9 ~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi---~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
|+.|..|.--||+.++. .....++|+..|+ --+.=-++||+.++..|...+++
T Consensus 1 ~~~M~vlV~YDI~~~kr------------r~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~~ 56 (91)
T 3exc_X 1 FQGMKLLVVYDVSDDSK------------RNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVKL 56 (91)
T ss_dssp ---CEEEEEEECCSHHH------------HHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCchH------------HHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHHH
Confidence 57788888888887653 2677889999996 44555678999999999888875
No 102
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=57.96 E-value=2.7 Score=24.61 Aligned_cols=16 Identities=25% Similarity=0.108 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 9 ~ft~~q~~~Le~~F~~ 24 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQK 24 (62)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3566666666666654
No 103
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=57.83 E-value=13 Score=29.32 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=38.7
Q ss_pred CCeehhhhhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 22 ~~K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+.+.+.-.|..+ +-..++..+++.+|++++++..++++.+.+.|.+.+++
T Consensus 319 ~~~~l~~~l~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 319 PKKGIKNVLKGY--VPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp TTSBHHHHTTTS--SCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred hhhhHHHhcccc--ChHHHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 344555544332 45567888999999999999999999999999988875
No 104
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.77 E-value=1.8 Score=27.29 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHhCCCCccCCcchhcccc
Q 033487 58 ELSAAELDNLMVVVANPRQFKIPDWFLNRQK 88 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~k 88 (118)
.-+.+++.+|.+.+.=| .-.|-.||-|||-
T Consensus 29 ~Ps~eei~~LA~~lgL~-~~VVrVWFqNrRa 58 (71)
T 2da7_A 29 EPNSDELLKISIAVGLP-QEFVKEWFEQRKV 58 (71)
T ss_dssp SCCHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-HHHHHHHHhhccc
Confidence 34789999999998743 2447899999984
No 105
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.73 E-value=2.7 Score=25.94 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (80)
T 2dms_A 13 TFTRAQLDVLEALFAK 28 (80)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4577777777766664
No 106
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=57.70 E-value=10 Score=28.37 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=29.4
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 40 LANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 40 ~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.+.++++.+|++ ++|+.+||-+|..+|.+++.+
T Consensus 247 ~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 247 KIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 456788999998 789999999999999999975
No 107
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=57.59 E-value=4.5 Score=34.18 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=29.0
Q ss_pred hhhhhhhcccCcchHHHHHHHhCCC--------CCCcCCCCCHHHHHHH
Q 033487 27 MFALTSIKGIGRRLANIVCKKADVD--------MNKRAGELSAAELDNL 67 (118)
Q Consensus 27 ~~aLt~IyGIG~~~A~~Ic~~lgi~--------~~~r~~~Ls~~qi~~L 67 (118)
...|+.|.|||+.+|..++++.|== ...+..-+++.|+.+|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedGIGekqarrI 515 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIREL 515 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTTCCHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHccccHHHHHHH
Confidence 5778999999999999999988732 1223345555555544
No 108
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=57.35 E-value=6.4 Score=23.40 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQ 23 (68)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhc
Confidence 4566666666666654
No 109
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=57.27 E-value=2.8 Score=24.33 Aligned_cols=15 Identities=20% Similarity=0.065 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|.+|+..|+.++..
T Consensus 12 ft~~q~~~Le~~f~~ 26 (61)
T 1akh_A 12 ISPQARAFLEEVFRR 26 (61)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 466666666666653
No 110
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.23 E-value=6.5 Score=23.46 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=6.2
Q ss_pred CCcchhcccc
Q 033487 79 IPDWFLNRQK 88 (118)
Q Consensus 79 ip~w~~nr~k 88 (118)
|--||-|||.
T Consensus 47 VqvWFqNRRa 56 (64)
T 2e19_A 47 VKKWFEKMQA 56 (64)
T ss_dssp HHHHHHHHHH
T ss_pred cCcchhcccC
Confidence 4557777763
No 111
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=57.03 E-value=5 Score=25.12 Aligned_cols=14 Identities=7% Similarity=0.356 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHh
Q 033487 59 LSAAELDNLMVVVA 72 (118)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (118)
+|.+|++.|+.+.+
T Consensus 24 ft~~Ql~~Le~F~~ 37 (80)
T 1wh7_A 24 FTAEQKEKMLAFAE 37 (80)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 67777777774333
No 112
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=56.80 E-value=2.9 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCcch
Q 033487 57 GELSAAELDNLMVVVANPRQFKIPDWF 83 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~~~~~~ip~w~ 83 (118)
+.||++|+..|..+|.. ...-|.|.
T Consensus 65 ~~ls~~ei~~l~~yl~~--~~~~~~W~ 89 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFK--QATDAAWK 89 (90)
T ss_dssp TTSCHHHHHHHHHHHHH--HHHHTCCC
T ss_pred ccCCHHHHHHHHHHHHh--cccccCCC
Confidence 36999999999999985 23236664
No 113
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=56.76 E-value=2.9 Score=25.08 Aligned_cols=16 Identities=6% Similarity=-0.195 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 8 ~ft~~Q~~~Le~~F~~ 23 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHF 23 (68)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcc
Confidence 4577788777777764
No 114
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=56.44 E-value=2.9 Score=23.98 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|.+|+..|+.++..
T Consensus 7 ft~~Q~~~Le~~F~~ 21 (58)
T 1ig7_A 7 FTTAQLLALERKFRQ 21 (58)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 466666666666653
No 115
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=56.44 E-value=4.9 Score=23.70 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.+++.
T Consensus 9 ~ft~~q~~~Le~~F~~ 24 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAA 24 (66)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 3566666666666653
No 116
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=56.35 E-value=4.5 Score=31.78 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.1
Q ss_pred hhhhhhhhcccCcchHHHHHHHh
Q 033487 26 IMFALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 26 v~~aLt~IyGIG~~~A~~Ic~~l 48 (118)
..-.|..++|||+.+|..|+-.+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 56678999999999999998775
No 117
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=56.15 E-value=3 Score=24.22 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|.+|+..|+.+++.
T Consensus 8 ft~~Q~~~Le~~F~~ 22 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYK 22 (60)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 456666666666553
No 118
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=55.86 E-value=4.2 Score=31.60 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=16.0
Q ss_pred hhcccCcchHHHHHHHhC
Q 033487 32 SIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lg 49 (118)
.++|||+++|.++++..|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 489999999999998876
No 119
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=54.94 E-value=4.5 Score=23.93 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=5.9
Q ss_pred CCcchhccc
Q 033487 79 IPDWFLNRQ 87 (118)
Q Consensus 79 ip~w~~nr~ 87 (118)
|-.||-|||
T Consensus 45 V~~WFqNrR 53 (67)
T 2k40_A 45 IQIWFQNRR 53 (67)
T ss_dssp HHHHHHHHH
T ss_pred hhHhhHhHH
Confidence 456777776
No 120
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=54.44 E-value=3.3 Score=25.39 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 15 ~ft~~Q~~~Le~~F~~ 30 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQ 30 (77)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhh
Confidence 4677888877777764
No 121
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=54.41 E-value=3.3 Score=24.31 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 9 ~ft~~Q~~~Le~~F~~ 24 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLF 24 (63)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhc
Confidence 3566777777766664
No 122
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=54.26 E-value=5.4 Score=30.86 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=23.8
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+|--+ ..++|||+++|.++++. |
T Consensus 212 ~q~id~~~L~GsD~~p--------~GvpGiG~ktA~kli~~-g 245 (326)
T 1a76_A 212 DDLIDIAIFMGTDYNP--------GGVKGIGFKRAYELVRS-G 245 (326)
T ss_dssp HHHHHHHHHHCCTTST--------TTTTTCCHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCCC--------CCCCCcCHHHHHHHHHc-C
Confidence 3455555666644322 17899999999999998 5
No 123
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=54.22 E-value=4.2 Score=31.67 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=25.0
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+|--+. .+.|||+++|.++++..|
T Consensus 224 ~q~id~~~L~G~Dy~p~--------gv~GiG~ktA~kli~~~g 258 (340)
T 1b43_A 224 EKLIELAILVGTDYNPG--------GIKGIGLKKALEIVRHSK 258 (340)
T ss_dssp HHHHHHHHHHCCTTSTT--------CSTTCCHHHHHHHHHTCS
T ss_pred HHHHHHHHhcCCCCCCC--------CCCCccHHHHHHHHHHcC
Confidence 34555556666544221 689999999999999876
No 124
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=54.12 E-value=5.8 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.2
Q ss_pred hhhhcccCcchHHHHHHHh
Q 033487 30 LTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~l 48 (118)
+..+.|||.++|..|-+.+
T Consensus 60 ~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 4689999999999988765
No 125
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=54.04 E-value=4.7 Score=24.26 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHh
Q 033487 59 LSAAELDNLMVVVA 72 (118)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (118)
+|.+|+..|+.++.
T Consensus 8 ft~~Q~~~Le~~F~ 21 (72)
T 1uhs_A 8 MTEDQVEILEYNFN 21 (72)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 56666666666665
No 126
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=53.96 E-value=3.3 Score=25.16 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 13 ~ft~~Q~~~Le~~F~~ 28 (73)
T 2l7z_A 13 PYTKVQLKELEREYAT 28 (73)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh
Confidence 3466677666666654
No 127
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=53.21 E-value=27 Score=21.32 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=27.7
Q ss_pred cchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHh
Q 033487 38 RRLANIVCKKADVDMN------KRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 38 ~~~A~~Ic~~lgi~~~------~r~~~Ls~~qi~~L~~~i~ 72 (118)
+..|.-|.+.+|+.+. ..++++|.+|+..|.+.-.
T Consensus 3 Ppas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~ 43 (67)
T 1qa6_A 3 PPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKM 43 (67)
T ss_dssp SCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHG
T ss_pred CCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHH
Confidence 3567778888888653 4679999999999998865
No 128
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=52.81 E-value=3.6 Score=25.44 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 28 ~ft~~Q~~~Le~~F~~ 43 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQR 43 (84)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4577777777777764
No 129
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=52.76 E-value=5.4 Score=31.23 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=25.1
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+|--.. .+.|||+++|.++++..|
T Consensus 221 ~q~id~~~L~G~D~~p~--------Gv~GIG~KtA~kLi~~~g 255 (346)
T 2izo_A 221 EQLIDIGILIGTDYNPD--------GIRGIGPERALKIIKKYG 255 (346)
T ss_dssp HHHHHHHHHHCCSSSTT--------CSTTCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCCC--------CCCCcCHHHHHHHHHHcC
Confidence 34555666667543221 588999999999999987
No 130
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=52.47 E-value=4.9 Score=24.28 Aligned_cols=15 Identities=7% Similarity=0.003 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHh
Q 033487 58 ELSAAELDNLMVVVA 72 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~ 72 (118)
.+|.+|+..|+.++.
T Consensus 8 ~ft~~Q~~~Le~~F~ 22 (73)
T 2hi3_A 8 GPTEDQVEILEYNFN 22 (73)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 356677777766665
No 131
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=51.91 E-value=4.8 Score=23.22 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHh
Q 033487 59 LSAAELDNLMVVVA 72 (118)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (118)
+|.+|+..|+.++.
T Consensus 5 ft~~q~~~Le~~f~ 18 (60)
T 1k61_A 5 FTKENVRILESWFA 18 (60)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555555554
No 132
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=51.90 E-value=3.9 Score=24.42 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|.+|+..|+.++..
T Consensus 9 ft~~Q~~~Le~~F~~ 23 (68)
T 1ftt_A 9 FSQAQVYELERRFKQ 23 (68)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 456666666665553
No 133
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=51.82 E-value=5.3 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 033487 56 AGELSAAELDNLMVVVAN 73 (118)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~ 73 (118)
-..++.+|+..|+.++..
T Consensus 31 r~~ft~~q~~~Le~~f~~ 48 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAK 48 (87)
T ss_dssp TCCCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 345677777777777764
No 134
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.18 E-value=6.4 Score=24.74 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 033487 56 AGELSAAELDNLMVVVAN 73 (118)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~ 73 (118)
-+.+|.+|+..|++++..
T Consensus 7 r~kfT~~Ql~~Le~~F~~ 24 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQ 24 (76)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 345788889888888885
No 135
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=51.18 E-value=5.6 Score=30.93 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=16.4
Q ss_pred hhcccCcchHHHHHHHhC
Q 033487 32 SIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lg 49 (118)
.+.|||+++|.+++++.|
T Consensus 239 Gv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 589999999999999876
No 136
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=51.09 E-value=5.6 Score=24.93 Aligned_cols=17 Identities=6% Similarity=-0.199 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..+|.+|+..|+.++..
T Consensus 33 t~ft~~Ql~~Le~~F~~ 49 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHF 49 (88)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHhc
Confidence 35688888888888875
No 137
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=50.60 E-value=5.7 Score=23.75 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 66 ~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 36999999999999985
No 138
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=49.66 E-value=4.3 Score=25.00 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 24 ~ft~~Q~~~Le~~F~~ 39 (81)
T 1fjl_A 24 TFSASQLDELERAFER 39 (81)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4677777777777764
No 139
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=49.21 E-value=6.1 Score=25.23 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..+|.+|+..|+.++..
T Consensus 39 t~ft~~Ql~~Le~~F~~ 55 (97)
T 1b72_A 39 TNFTTRQLTELEKEFHF 55 (97)
T ss_dssp CCCCHHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHhc
Confidence 34688888888888875
No 140
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.15 E-value=4.3 Score=24.94 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.+++.
T Consensus 14 ~ft~~Q~~~Le~~F~~ 29 (80)
T 2da4_A 14 QFSDRDLATLKKYWDN 29 (80)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3677777777777765
No 141
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=49.11 E-value=4.5 Score=24.74 Aligned_cols=16 Identities=6% Similarity=-0.178 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 19 ~ft~~Q~~~Le~~F~~ 34 (77)
T 1puf_A 19 PYTKHQTLELEKEFLF 34 (77)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 3577777777777764
No 142
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=49.02 E-value=7.1 Score=30.26 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=27.4
Q ss_pred hhhhhh-hcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 27 MFALTS-IKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 27 ~~aLt~-IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
.-.|.. ++|||+.+|..|+-.+ ++... -.-|..+.++..-+.
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~---~~VDt~V~Rv~~Rlg 169 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIA-FGQAT---GVVDGNVARVLCRVR 169 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHH-SCCCC---CCCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh-cCCCC---ccccHHHHHHHHHhC
Confidence 345555 9999999999998654 33221 124567777766663
No 143
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=49.01 E-value=4.5 Score=25.84 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 23 ~ft~~Ql~~Le~~F~~ 38 (93)
T 3a01_A 23 SFTRIQVAELEKRFHK 38 (93)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4678888888777764
No 144
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=48.92 E-value=3.9 Score=34.20 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=16.8
Q ss_pred hhhhhhcccCcchHHHHHHHhCCCCC
Q 033487 28 FALTSIKGIGRRLANIVCKKADVDMN 53 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lgi~~~ 53 (118)
+-|..|.|||..+|-+|..++|+.++
T Consensus 44 y~l~~i~gigf~~aD~ia~~~g~~~~ 69 (574)
T 3e1s_A 44 FTLTEVEGIGFLTADKLWQARGGALD 69 (574)
T ss_dssp CGGGTSSSCCHHHHHTTC-------C
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCCC
Confidence 55688999999999999999999865
No 145
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=48.65 E-value=6.2 Score=31.33 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=40.6
Q ss_pred cccchhhccccCCCCeehhhhhhhhcccCcchHHHHHH-HhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 9 FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCK-KADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 9 ~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~-~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
|.++++.+ ..-..|++..+|..+.+-......+.+. .+|+ ++|+.+||-+|..+|.+++.+
T Consensus 271 ~~~vvr~~--F~qRRKtL~n~L~~l~~~~~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~ 332 (353)
T 1i4w_A 271 WDYVTRHL--MILKRTPLNTVMDSLGHGGQQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME 332 (353)
T ss_dssp HHHHHHHH--HTTTTSCTTTGGGGSSTTHHHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHH--HhhchHHHHHHHHhhccccHHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence 55555552 3356789999997654311111122233 6677 599999999999999999985
No 146
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=48.26 E-value=14 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 41 ANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 41 A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
..++++.+|+++ .|+.+||-+|..+|.+++++
T Consensus 260 ~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 260 CLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 466788999986 79999999999999999975
No 147
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=47.78 E-value=10 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=20.5
Q ss_pred hhhhcccCcchHHHHHHHhCCCCCCcCCCCCH
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~ 61 (118)
++.+.|||+.++..+ +.+||.. +++|-.
T Consensus 186 v~~l~giG~~~~~~L-~~~Gi~T---igdL~~ 213 (221)
T 1im4_A 186 IDEIPGIGSVLARRL-NELGIQK---LRDILS 213 (221)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCB---TTC---
T ss_pred cccccCCCHHHHHHH-HHcCCCc---HHHHHC
Confidence 688999999888775 8899985 666544
No 148
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.49 E-value=4.9 Score=24.56 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHhC
Q 033487 59 LSAAELDNLMVVVAN 73 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~ 73 (118)
+|..|+..|+.++..
T Consensus 11 ~t~~ql~~LE~~F~~ 25 (69)
T 2l9r_A 11 MSHTQVIELERKFSH 25 (69)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 455666666655553
No 149
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=47.26 E-value=7.5 Score=30.76 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=23.9
Q ss_pred cccccchhhccccCCCCeehhhhhhhhcccCcchHHHHHHHhC
Q 033487 7 EDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 7 ~~~~~mvrI~g~~i~~~K~v~~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
++|-.+.=+.|+|- +..|.|||+++|.+++++.|
T Consensus 213 ~q~id~~~L~G~D~---------~pgv~GiG~ktA~kli~~~~ 246 (352)
T 3qe9_Y 213 EKFRYMCILSGCDY---------LSSLRGIGLAKACKVLRLAN 246 (352)
T ss_dssp HHHHHHHHHHCCSS---------SCCCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC---------CCCCCCeeHHHHHHHHHHhC
Confidence 34555555555432 23689999999999999985
No 150
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=46.91 E-value=5.1 Score=24.82 Aligned_cols=16 Identities=6% Similarity=-0.120 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 26 ~ft~~Ql~~Le~~F~~ 41 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHT 41 (81)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhc
Confidence 4677777777777764
No 151
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=46.62 E-value=14 Score=28.50 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=26.6
Q ss_pred hhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~ 66 (118)
++.+.|||+.++..+ +.+||..=--+..++.+++.+
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~ 215 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKG 215 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHH
Confidence 688999999888875 889998755555556555543
No 152
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=45.71 E-value=6.5 Score=30.91 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=30.1
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHH
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVV 71 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i 71 (118)
.|+.++|||+++|..|.+.+.=+.-..+.+|.+ ++. +.+.+
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~-~~p-~l~ll 98 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHISE-SVP-VLELF 98 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCT-THH-HHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHhh-hhH-HHHHH
Confidence 489999999999999999877555566666643 333 44555
No 153
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=45.41 E-value=12 Score=24.53 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred hhhhhhcccCcchHHHHHHHhCCCC
Q 033487 28 FALTSIKGIGRRLANIVCKKADVDM 52 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lgi~~ 52 (118)
-.++.+.|||+..+.++-+ .||+.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 3568999999999999877 78874
No 154
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=44.63 E-value=12 Score=22.31 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHH
Q 033487 58 ELSAAELDNLMVVV 71 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i 71 (118)
.+|.+|+..|..++
T Consensus 7 ~ft~~q~~~Le~~f 20 (73)
T 1puf_B 7 NFNKQATEILNEYF 20 (73)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34566666666665
No 155
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=43.58 E-value=12 Score=24.44 Aligned_cols=23 Identities=4% Similarity=0.198 Sum_probs=20.2
Q ss_pred hhhhhcccCcchHHHHHHHhCCC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~ 51 (118)
.|..--|+...+..++|+++|++
T Consensus 44 elA~~~~vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 44 EISALANSSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCHHHHHHHHHHcCCC
Confidence 46677899999999999999998
No 156
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=43.32 E-value=8.6 Score=23.12 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 68 ~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHH
Confidence 47999999999999985
No 157
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=42.92 E-value=7.5 Score=32.38 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.5
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRA 56 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~ 56 (118)
-++.+.|||+.++..+.+.+||.+-..+
T Consensus 308 PV~~l~GIG~~t~~~L~~llGI~~~~ti 335 (520)
T 3mfi_A 308 EITSFWTLGGVLGKELIDVLDLPHENSI 335 (520)
T ss_dssp CGGGSTTCSSHHHHHHHHHTTCCSSSHH
T ss_pred cHHHhcCCCHHHHHHHHHhcCCCcccch
Confidence 4678999999999999998899544343
No 158
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.65 E-value=11 Score=25.98 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCcchhccccccCCCc
Q 033487 57 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 94 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~ 94 (118)
.+|+++|+..|.+|+.. ..+..---|=|+|+-+|-
T Consensus 10 ~~l~~ee~~el~~WL~~---l~Ls~~~rn~rRDFSdG~ 44 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDN---IPLSRPKRNLSRDFSDGV 44 (127)
T ss_dssp SSCCHHHHHHHHHHHHH---SCCSCCSSCHHHHHTTSH
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCCCCchhhhccchh
Confidence 47999999999999984 443333456668887773
No 159
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=42.48 E-value=20 Score=32.04 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=37.3
Q ss_pred eehhhhhhhhcccCcchHHHHHHHhCCCC--------CCcC--CCCCHHHHHHHHHH
Q 033487 24 QKIMFALTSIKGIGRRLANIVCKKADVDM--------NKRA--GELSAAELDNLMVV 70 (118)
Q Consensus 24 K~v~~aLt~IyGIG~~~A~~Ic~~lgi~~--------~~r~--~~Ls~~qi~~L~~~ 70 (118)
..|.++|..|+|||...|..|.+.=.=.| -.|+ +.++...++.|.++
T Consensus 829 ~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~a 885 (910)
T 2hnh_A 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 (910)
T ss_dssp SCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHHT
T ss_pred CeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHHC
Confidence 47999999999999999999997764223 3455 36899999998874
No 160
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=42.34 E-value=6.6 Score=24.40 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHh
Q 033487 59 LSAAELDNLMVVVA 72 (118)
Q Consensus 59 Ls~~qi~~L~~~i~ 72 (118)
+|.+|+..|+.++.
T Consensus 9 ft~~q~~~Le~~f~ 22 (83)
T 1le8_B 9 FTKENVRILESWFA 22 (83)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66777777766665
No 161
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=42.15 E-value=8.8 Score=22.93 Aligned_cols=10 Identities=30% Similarity=1.192 Sum_probs=6.5
Q ss_pred CCcchhcccc
Q 033487 79 IPDWFLNRQK 88 (118)
Q Consensus 79 ip~w~~nr~k 88 (118)
|-.||-|||.
T Consensus 45 V~~WFqNrR~ 54 (67)
T 3k2a_A 45 VNNWFINARR 54 (67)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhHHHHH
Confidence 4467777764
No 162
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=41.79 E-value=31 Score=21.55 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=27.4
Q ss_pred cchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHh
Q 033487 38 RRLANIVCKKADVDMN------KRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 38 ~~~A~~Ic~~lgi~~~------~r~~~Ls~~qi~~L~~~i~ 72 (118)
+..|.-|.+.+|+.+. ..++++|.+|+..|.+.-.
T Consensus 8 Ppas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~ 48 (76)
T 1hc8_A 8 PPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKM 48 (76)
T ss_dssp CCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSG
T ss_pred CCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHH
Confidence 4567778888888753 3678999999999998754
No 163
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.79 E-value=11 Score=22.48 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=6.7
Q ss_pred CCcchhcccc
Q 033487 79 IPDWFLNRQK 88 (118)
Q Consensus 79 ip~w~~nr~k 88 (118)
|-.||-|||.
T Consensus 50 V~~WFqNrR~ 59 (74)
T 2ly9_A 50 IKKWFSDTRY 59 (74)
T ss_dssp HHHHHHHHHH
T ss_pred eeeCChhHhH
Confidence 4558888764
No 164
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=41.14 E-value=15 Score=21.88 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHHHh
Q 033487 57 GELSAAELDNLMVVVA 72 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~ 72 (118)
..++.+|+..|+.++.
T Consensus 12 ~~~~~~q~~~Le~~f~ 27 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLF 27 (73)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH
Confidence 3567777777777774
No 165
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=41.03 E-value=18 Score=21.33 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|.+
T Consensus 60 ~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 60 GRADREDLVKAIEYMLS 76 (78)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 47999999999999975
No 166
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=40.28 E-value=16 Score=27.99 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=21.3
Q ss_pred ehhhhhh-hhcccCcchHHHH-HHHhCCC
Q 033487 25 KIMFALT-SIKGIGRRLANIV-CKKADVD 51 (118)
Q Consensus 25 ~v~~aLt-~IyGIG~~~A~~I-c~~lgi~ 51 (118)
.+.-+|. .+.|+|+..|.++ |..+|.+
T Consensus 189 ~l~~~l~~~~~G~s~~la~El~~~ra~~~ 217 (288)
T 3doa_A 189 NIAKQLLNQFEGFSPLITNEIVSRRQFMT 217 (288)
T ss_dssp CHHHHHHHHBTTCCHHHHHHHHTTSSSCS
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHcCCc
Confidence 3556665 5559999999999 9999954
No 167
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=40.23 E-value=39 Score=24.17 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=31.7
Q ss_pred cCcchHHHHHHHhCCCCCC--------cCCCCCHHHHHHHHHHHhC
Q 033487 36 IGRRLANIVCKKADVDMNK--------RAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 36 IG~~~A~~Ic~~lgi~~~~--------r~~~Ls~~qi~~L~~~i~~ 73 (118)
+-+..|.-|.+.+|+.+.. .++++|-+|+..|.+.-..
T Consensus 73 vtPpas~Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~ 118 (165)
T 2zkr_i 73 VVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRH 118 (165)
T ss_dssp CCCCHHHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTT
T ss_pred ECCCHHHHHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHH
Confidence 3578899999999998655 5789999999999998753
No 168
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=40.11 E-value=21 Score=20.78 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999974
No 169
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=40.06 E-value=14 Score=28.57 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=25.2
Q ss_pred hhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
++.+.|||+.++..+ +.+||..=--+..++.+++.
T Consensus 181 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~ 215 (354)
T 3bq0_A 181 IDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (354)
T ss_dssp STTSTTCCHHHHHHH-TTTTCCBGGGGGGSCHHHHH
T ss_pred cccccCcCHHHHHHH-HHcCCccHHHHhcCCHHHHH
Confidence 678899999888775 88999864444444555544
No 170
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=39.65 E-value=14 Score=22.75 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=6.8
Q ss_pred CCcchhcccc
Q 033487 79 IPDWFLNRQK 88 (118)
Q Consensus 79 ip~w~~nr~k 88 (118)
|-.||-|||.
T Consensus 48 V~~WFqNrR~ 57 (87)
T 1b72_B 48 VSNWFGNKRI 57 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4568888774
No 171
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=39.60 E-value=21 Score=21.16 Aligned_cols=17 Identities=0% Similarity=0.143 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|.+
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999999974
No 172
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=39.20 E-value=15 Score=24.01 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=19.3
Q ss_pred hhhhhcccCcchHHHHHHHhCCC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~ 51 (118)
.|..--|+.+.+...+|+++|++
T Consensus 40 elA~~~~vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 40 EIANQLETSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HHHHHHTSCHHHHHHHHHHHSTT
T ss_pred HHHHHHCCCHHHHHHHHHHhCCC
Confidence 45667789999999999999988
No 173
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=38.42 E-value=14 Score=28.63 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=25.6
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
-+..+.|||+.++..+ +.+||..-.-+..++.+.+.
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~ 214 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLT 214 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHH
Confidence 3578999999998876 78999864444444555554
No 174
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=37.91 E-value=24 Score=21.30 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.||++|+..|..+|.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999864
No 175
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=37.87 E-value=82 Score=22.49 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=30.7
Q ss_pred CcchHHHHHHHhCCCCC--------CcCCCCCHHHHHHHHHHHhC
Q 033487 37 GRRLANIVCKKADVDMN--------KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 37 G~~~A~~Ic~~lgi~~~--------~r~~~Ls~~qi~~L~~~i~~ 73 (118)
-+..|.-|.+.+|+.+. .+++++|-+|+..|.+.-..
T Consensus 75 ~Ppas~Ll~Ka~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~ 119 (166)
T 3iz5_J 75 VPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRN 119 (166)
T ss_dssp TTTTHHHHHHHHTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHhcCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHh
Confidence 57888999999998764 24889999999999988753
No 176
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=37.73 E-value=5.9 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHhCCCCccCCcchhccc
Q 033487 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQ 87 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~ 87 (118)
+|.++.+.|...+.=+ .-.|..||-|||
T Consensus 29 Ps~~er~eLA~~tgLt-~~qVkvWFqNRR 56 (66)
T 3nau_A 29 PDDAEVYRLIEVTGLA-RSEIKKWFSDHR 56 (66)
T ss_dssp CCHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcC-HHHhhHhcccch
Confidence 3455555555555311 122567888887
No 177
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=37.44 E-value=6.2 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHhCCCCccCCcchhccc
Q 033487 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQ 87 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~ 87 (118)
.+.++...|...+.=+ .-.|-.||-|||
T Consensus 42 p~~~~r~~La~~l~l~-~~qV~~WFqNrR 69 (80)
T 2da3_A 42 PTRKMLDHIAHEVGLK-KRVVQVWFQNTR 69 (80)
T ss_dssp CCHHHHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcC-HHHhHHHhHHHH
Confidence 3445555555555321 122567888876
No 178
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=37.26 E-value=19 Score=25.93 Aligned_cols=30 Identities=0% Similarity=-0.082 Sum_probs=26.6
Q ss_pred HHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 44 VCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 44 Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+++.+|++++.++.+|+.+|..+|.+++..
T Consensus 211 ~~~~~~~~~~~r~~~l~~~~f~~l~~~~~~ 240 (245)
T 1yub_A 211 FHQAMKHAKVNNLSTITYEQVLSIFNSYLL 240 (245)
T ss_dssp HHHHHHHTTCSCTTSCCSHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 468899999999999999999999988763
No 179
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=36.53 E-value=9.5 Score=33.64 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.3
Q ss_pred hhcccCcchHHHHHHHhC
Q 033487 32 SIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lg 49 (118)
.++|||+++|.++++..|
T Consensus 195 GVpGIG~KtA~kLl~~~g 212 (832)
T 1bgx_T 195 GVKGIGEKTARKLLEEWG 212 (832)
T ss_dssp CCCCSSSCTTTTTGGGTT
T ss_pred CCCCcCchHHHHHHHHCC
Confidence 489999999999999887
No 180
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=35.91 E-value=15 Score=26.41 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.6
Q ss_pred hhhhhcccCcchHHHHHHHhC
Q 033487 29 ALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lg 49 (118)
.|..+.|||+.+|..|.+.+.
T Consensus 195 ~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 195 EISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHSTTCCHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHh
Confidence 478899999999999987663
No 181
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=35.81 E-value=12 Score=28.68 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=29.0
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCC-----------CCCHHHHHHHHHHHhC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAG-----------ELSAAELDNLMVVVAN 73 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~-----------~Ls~~qi~~L~~~i~~ 73 (118)
.|.++.|||+..+++ |...|+..-..+. .+++.+..++.+++++
T Consensus 158 pL~Qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEK-CKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHH-HHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 478999999999887 5567774332222 3456666666667664
No 182
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=35.71 E-value=19 Score=24.13 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=11.1
Q ss_pred hhhhhcccCcchHHHHHHHh
Q 033487 29 ALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~l 48 (118)
-|..+.|||..+|.+|++.+
T Consensus 59 eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 59 ELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHH
Confidence 34555666666655555544
No 183
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=35.58 E-value=28 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.4
Q ss_pred CCcCCCCCHHHHHHHHHHHhC
Q 033487 53 NKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 53 ~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.+....||++|+..|..+|..
T Consensus 49 ~Mp~~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 49 GMPGGIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp TBCSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHh
Confidence 344478999999999999974
No 184
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=35.55 E-value=15 Score=28.74 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.1
Q ss_pred hhhhhcccCcchHHHHHHHhC
Q 033487 29 ALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lg 49 (118)
.|+.++|||+++|..|.+.+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH
Confidence 489999999999999998875
No 185
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=35.33 E-value=16 Score=24.86 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=33.3
Q ss_pred hhccccCCCCeehh-hhhhhhcccCcchHHHHHHHhCCCCCCcCCCC
Q 033487 14 RVLNTNVDGKQKIM-FALTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (118)
Q Consensus 14 rI~g~~i~~~K~v~-~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~L 59 (118)
+++.+-.++.|.-. -.|...+|+.-..|..|.+.+|++....++.|
T Consensus 68 flmd~V~~E~KeaL~ellEE~PGaalqia~~Li~~lGls~~~~lkkl 114 (114)
T 3fgx_A 68 LTFSCIVPEQEEELRQAAEEFPGLTFNTASRLMEIVGASAATSLKKL 114 (114)
T ss_dssp HHHTTBCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHTCCCCCCCC--
T ss_pred HHHHhcCcccHHHHHHHHHHCccHHHHHHHHHHHHhCCcchhhhhcC
Confidence 34455555555444 44458999999999999999999988877654
No 186
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=35.19 E-value=7.2 Score=22.00 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHhCCCCccCCcchhcccc
Q 033487 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQK 88 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~k 88 (118)
++..+...|...+.=+ .-.|-.||-|||.
T Consensus 27 p~~~~r~~La~~l~l~-~~qV~~WFqNrR~ 55 (58)
T 3rkq_A 27 LSAPERDQLASVLKLT-STQVKIWFQNRRY 55 (58)
T ss_dssp CCHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcC-HHHHHHhhHHhhc
Confidence 3445555555554421 1224567777763
No 187
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=34.79 E-value=8.7 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHhCCCCccCCcchhcccc
Q 033487 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQK 88 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~k 88 (118)
.+.++...|...+.=+ .-.|-.||-|||.
T Consensus 31 p~~~~r~~La~~~~L~-~~qV~~WFqNrR~ 59 (64)
T 1du6_A 31 PSEEAKEELAKKCGIT-VSQVSNWFGNKRI 59 (64)
T ss_dssp CCHHHHHHHHHHHTSC-HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 4555555555555421 1225678888875
No 188
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=34.75 E-value=22 Score=26.41 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=31.4
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcchh
Q 033487 40 LANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFL 84 (118)
Q Consensus 40 ~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~ 84 (118)
....+++.+|++ .....||+++++.+.+..++ +|.-+.|.+
T Consensus 214 l~~~~~~~~~~~--~~~~~lt~~e~~~~~~l~~~--ky~~~~W~~ 254 (262)
T 2c8m_A 214 LIRGFSETLHID--FREDTITEKEESLARELFDK--KYSTEEWNM 254 (262)
T ss_dssp HHHHHHHHHTCE--EEECCCCHHHHHHHHHHHHH--TTTSHHHHH
T ss_pred HHHHHHHHhCCC--ceecCCCHHHHHHHHHHHHh--hcCCccccC
Confidence 445566777765 56689999999999999885 487888965
No 189
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=34.58 E-value=13 Score=21.99 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 70 ~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 70 GRLSDADIANVAAYIAD 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999974
No 190
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=34.54 E-value=14 Score=23.27 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=21.1
Q ss_pred hhhhhhcccCcchHHHHHHHhCCCC
Q 033487 28 FALTSIKGIGRRLANIVCKKADVDM 52 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lgi~~ 52 (118)
-.|..++.-|+.+|..|++.+||++
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~ 39 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTK 39 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGG
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCc
Confidence 3456677789999999999999986
No 191
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=34.26 E-value=22 Score=20.65 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 47999999999999974
No 192
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=33.98 E-value=22 Score=20.77 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 47999999999999863
No 193
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=33.85 E-value=30 Score=20.06 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=16.5
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033487 54 KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 54 ~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+..-.||++|+..|..+|..
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 61 MPPNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp BCCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44348999999999999974
No 194
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=33.70 E-value=14 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.8
Q ss_pred hhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
++.+.|||+.++..+ +.+||..=--+..++.+.+.
T Consensus 236 v~~l~GIG~~t~~~L-~~lGI~TigdLa~~~~~~L~ 270 (420)
T 3osn_A 236 IKEIPGIGYKTAKCL-EALGINSVRDLQTFSPKILE 270 (420)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCSHHHHHHSCHHHHH
T ss_pred HHHccCCCHHHHHHH-HHhCCCcHHHHhhCCHHHHH
Confidence 678999999999887 67999753333344555554
No 195
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=33.60 E-value=17 Score=28.74 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=19.7
Q ss_pred hhhhhcccCcchHHHHHHHhCC
Q 033487 29 ALTSIKGIGRRLANIVCKKADV 50 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi 50 (118)
.|+.++|||.++|..|.+.+.=
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~t 83 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLEH 83 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHc
Confidence 4899999999999999998763
No 196
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=33.19 E-value=11 Score=32.57 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=29.4
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
.|.|+|++++.++.+..+|..-.-+-.|+.+++.
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~ 478 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLL 478 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHh
Confidence 6999999999999999999887778888877653
No 197
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=32.96 E-value=11 Score=31.41 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=34.3
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
.|+.+.|||.++|.+|..-+.+-.+. -.-+.-+|...+.+.|.+
T Consensus 132 ~L~~~~GiG~Ktaq~I~~~l~~~~~~-~~r~~~~e~~~~~~~i~~ 175 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATILENVVFLFEA-RQRQSLRAGLAVAEELAG 175 (578)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHHHH-CSSEEHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhh-cCCeeHHHHHHHHHHHHH
Confidence 57889999999999997766665333 356677888888888875
No 198
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=32.93 E-value=30 Score=20.05 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 64 ~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999974
No 199
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=32.57 E-value=17 Score=33.12 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=32.1
Q ss_pred ehhhhhhhhcccCcchHHHHHHHhCCCCCCcC------CCCCHHHHHHHHHH
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKADVDMNKRA------GELSAAELDNLMVV 70 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~lgi~~~~r~------~~Ls~~qi~~L~~~ 70 (118)
.|.++|..|+|+|...|.+|.+.=.=.|-..+ ..++...++.|.++
T Consensus 964 ~Ir~gL~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~~v~k~~lE~Li~a 1015 (1041)
T 3f2b_A 964 SLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLESR 1015 (1041)
T ss_dssp EEECCGGGSTTCCHHHHHHHHHHHHTSCCCSHHHHHHHHTCCHHHHHHHHHT
T ss_pred EEEEchHhhCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHC
Confidence 69999999999999999999875431222211 13677777776653
No 200
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=32.33 E-value=12 Score=26.06 Aligned_cols=18 Identities=6% Similarity=0.050 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHhC
Q 033487 56 AGELSAAELDNLMVVVAN 73 (118)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~ 73 (118)
-..+|.+|+..|+.++..
T Consensus 101 Rt~ft~~q~~~Le~~F~~ 118 (164)
T 2d5v_A 101 RLVFTDVQRRTLHAIFKE 118 (164)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhc
Confidence 345799999999988885
No 201
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=31.76 E-value=32 Score=20.06 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=16.4
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033487 54 KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 54 ~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+....||++|+..|..+|..
T Consensus 59 Mp~~~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 59 MPPQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp BCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44448999999999999963
No 202
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=31.58 E-value=39 Score=20.78 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=12.1
Q ss_pred cCCCCCHHHHHHHHHHHhC
Q 033487 55 RAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 55 r~~~Ls~~qi~~L~~~i~~ 73 (118)
+=..++.+++..|.+++.+
T Consensus 10 ~R~~~s~~q~~~L~~~f~~ 28 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMYK 28 (83)
T ss_dssp CCSSCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHH
Confidence 3345677777777777653
No 203
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=31.46 E-value=19 Score=31.09 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=30.5
Q ss_pred hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033487 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (118)
Q Consensus 31 t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~ 66 (118)
-+|.|+|++++.++.+..+|..-.-+-.|+.+++..
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~ 484 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG 484 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc
Confidence 489999999999999999998877788888776543
No 204
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=31.22 E-value=33 Score=20.01 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.||++|+..|..+|..
T Consensus 66 ~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 66 RLSDEEIANVAAYVLA 81 (88)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999974
No 205
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.93 E-value=55 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.0
Q ss_pred CCcCCCCCHHHHHHHHHHHhC
Q 033487 53 NKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 53 ~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
...++.||++|-+.|.++|..
T Consensus 11 ~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 11 RLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHh
Confidence 345789999999999999985
No 206
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=30.90 E-value=52 Score=21.00 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=14.0
Q ss_pred cccCcchHHHHHHHhCCCCC
Q 033487 34 KGIGRRLANIVCKKADVDMN 53 (118)
Q Consensus 34 yGIG~~~A~~Ic~~lgi~~~ 53 (118)
..+...+...||+.+|++++
T Consensus 50 ~~p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 50 QHPSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp CCCCHHHHHHHHHHHTCCSH
T ss_pred CCCCHHHHHHHHHHHCcCHH
Confidence 34556677788888888765
No 207
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=30.51 E-value=64 Score=22.39 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=30.3
Q ss_pred CcchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHhC
Q 033487 37 GRRLANIVCKKADVDMN------KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 37 G~~~A~~Ic~~lgi~~~------~r~~~Ls~~qi~~L~~~i~~ 73 (118)
=+..|.-|.+.+|+.+. ..++++|-+|+..|.+.-..
T Consensus 71 ~Ppas~Ll~ka~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~ 113 (140)
T 1mms_A 71 TPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMP 113 (140)
T ss_dssp CCCHHHHHHHHHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHH
Confidence 36788888899999864 36789999999999998753
No 208
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=30.31 E-value=11 Score=23.05 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 77 ~~ls~~ei~~l~~yl~~ 93 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKF 93 (105)
T ss_dssp CCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999999985
No 209
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=30.17 E-value=66 Score=20.50 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=32.2
Q ss_pred CcchHHHHHHHhC--CCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcc
Q 033487 37 GRRLANIVCKKAD--VDMNKRAGELSAAELDNLMVVVANPRQFKIPDW 82 (118)
Q Consensus 37 G~~~A~~Ic~~lg--i~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w 82 (118)
+.+++.++.+..- ++|+.+-+..|++|-..|.+++.. |+ +.|
T Consensus 32 ~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~---~G-~~W 75 (107)
T 2k9n_A 32 ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE---YG-PKW 75 (107)
T ss_dssp TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH---TC-SCH
T ss_pred CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH---hC-cCH
Confidence 3456666665543 889999999999999999999986 64 456
No 210
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=29.89 E-value=25 Score=20.53 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999999863
No 211
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=29.74 E-value=14 Score=25.48 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 93 ~ft~~Q~~~Le~~F~~ 108 (146)
T 1au7_A 93 TISIAAKDALERHFGE 108 (146)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH
Confidence 4799999999999885
No 212
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=29.50 E-value=22 Score=28.38 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.0
Q ss_pred hhhhhcccCcchHHHHHHHhCCC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~ 51 (118)
.|+.++|||.++|..|-+.+.=+
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~tG 103 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIEDG 103 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHHHS
T ss_pred HHhcCCCCcHHHHHHHHHHHHcC
Confidence 48999999999999999987633
No 213
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=29.41 E-value=38 Score=20.04 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999974
No 214
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=29.24 E-value=38 Score=19.53 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.||++|+..|..+|..
T Consensus 64 ~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLS 79 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999974
No 215
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=29.22 E-value=14 Score=25.73 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 107 ~ft~~Q~~~Le~~F~~ 122 (160)
T 1e3o_C 107 SIETNIRVALEKSFME 122 (160)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhh
Confidence 5699999999998885
No 216
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=29.14 E-value=14 Score=25.98 Aligned_cols=16 Identities=6% Similarity=-0.033 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.+|.+|+..|+.++..
T Consensus 105 ~ft~~Ql~~LE~~F~~ 120 (164)
T 2xsd_C 105 SIEVGVKGALESHFLK 120 (164)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHhc
Confidence 4689999999888875
No 217
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=29.04 E-value=38 Score=19.82 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.||++|+..|..+|..
T Consensus 67 ~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 67 MIPPADALKIGEYVVA 82 (85)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6999999999999974
No 218
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=28.95 E-value=27 Score=19.29 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccCCc
Q 033487 56 AGELSAAELDNLMVVVANPRQFKIPD 81 (118)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~~~~~~ip~ 81 (118)
+.+||=-|+..|.+.++. .|+|++
T Consensus 10 i~~lTvlE~~eLvk~lee--kfGVsa 33 (40)
T 1dd4_C 10 IEKLTVSELAELVKKLED--KFGVTA 33 (40)
T ss_dssp HTTSCHHHHHHHHHHHHH--HTCCCS
T ss_pred HHhCcHHHHHHHHHHHHH--HHCCCc
Confidence 578899999999999997 687753
No 219
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=28.86 E-value=38 Score=19.76 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 67 ~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 35999999999999974
No 220
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=28.62 E-value=49 Score=25.80 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=26.7
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
-++.+.|||+.++..+ +.+||..---+..++.+.+.
T Consensus 180 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~ 215 (362)
T 4f4y_A 180 DIDEIPGIGSVLARRL-NELGIQKLRDILSKNYNELE 215 (362)
T ss_dssp BSTTSTTCCSTTHHHH-HHTTCCBGGGGTTSCHHHHH
T ss_pred ChhhccCCCHHHHHHH-HHcCCChHHHHhcCCHHHHH
Confidence 3578899999999875 57999875555566666554
No 221
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=28.41 E-value=28 Score=23.84 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..+|.+|+..|+.++..
T Consensus 98 t~ft~~q~~~Le~~F~~ 114 (151)
T 3d1n_I 98 TSFTPQAIEALNAYFEK 114 (151)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 34799999999999885
No 222
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.36 E-value=58 Score=18.66 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcc
Q 033487 49 DVDMNKRAGELSAAELDNLMVVVANPRQFKIPDW 82 (118)
Q Consensus 49 gi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w 82 (118)
|-+++..-+..|++|=..|.++++. |+...|
T Consensus 1 gss~~~~~~~WT~eED~~L~~~v~~---~G~~~W 31 (60)
T 1x41_A 1 GSSGSSGDPSWTAQEEMALLEAVMD---CGFGNW 31 (60)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHH---TCTTCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---HCcCcH
Confidence 4466777788999999999999986 765566
No 223
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=28.17 E-value=38 Score=20.85 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=23.2
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcc
Q 033487 49 DVDMNKRAGELSAAELDNLMVVVANPRQFKIPDW 82 (118)
Q Consensus 49 gi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w 82 (118)
-++|+.+-+..|++|-+.|.++++. |+ +.|
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~---~G-~kW 45 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIK---HG-NDW 45 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHH---HS-SCH
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHH---HC-CCH
Confidence 3689999999999999999999986 64 446
No 224
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=27.77 E-value=15 Score=33.38 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=0.0
Q ss_pred cccchhhccccCCCCee-----hhhhhhhhcccCcchHHHHHHH
Q 033487 9 FQHILRVLNTNVDGKQK-----IMFALTSIKGIGRRLANIVCKK 47 (118)
Q Consensus 9 ~~~mvrI~g~~i~~~K~-----v~~aLt~IyGIG~~~A~~Ic~~ 47 (118)
+-.+|--.|+|| |.. -.-.|+.+.|||+++|..|.+.
T Consensus 695 v~d~VN~vGVdi--NtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~ 736 (1030)
T 3psf_A 695 FVDIVNLVSVEV--NKATDNNYYASALKYISGFGKRKAIDFLQS 736 (1030)
T ss_dssp HHHHHHHHCEEH--HHHHTCHHHHTTGGGSTTCCHHHHHHHHHH
T ss_pred HHhhccccCccH--HHhhcCcCCHHHHhhCCCCCHHHHHHHHHH
No 225
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=27.69 E-value=12 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHhCCCCccCCcchhcccc
Q 033487 60 SAAELDNLMVVVANPRQFKIPDWFLNRQK 88 (118)
Q Consensus 60 s~~qi~~L~~~i~~~~~~~ip~w~~nr~k 88 (118)
+..+...|...+.=+ .-.|-.||-|||.
T Consensus 35 ~~~~r~~La~~l~l~-~~qV~~WFqNrR~ 62 (75)
T 2m0c_A 35 DVYAREQLAMRTDLT-EARVQVWFQNRRA 62 (75)
T ss_dssp CHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC-HHHHHHHhHHHHH
Confidence 444444444444321 1224568888764
No 226
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=27.50 E-value=23 Score=22.22 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.4
Q ss_pred hhhhhcccCcchHHHHHHHhCCCCCC
Q 033487 29 ALTSIKGIGRRLANIVCKKADVDMNK 54 (118)
Q Consensus 29 aLt~IyGIG~~~A~~Ic~~lgi~~~~ 54 (118)
-+....-=|+.+|..|.+.+|+...+
T Consensus 15 I~~fL~~~Gp~~AL~IAK~LGlktAK 40 (72)
T 3eyi_A 15 IYRFLKDNGPQRALVIAQALGMRTAK 40 (72)
T ss_dssp HHHHHHHHCSEEHHHHHHHTTCCSGG
T ss_pred HHHHHHHcCCchHHHHHHHhCcchhh
Confidence 34455567999999999999998644
No 227
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=27.45 E-value=55 Score=19.15 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 47999999999999985
No 228
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=26.90 E-value=64 Score=20.72 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=10.9
Q ss_pred hhhhcccCcchHHHHHHHhCCC
Q 033487 30 LTSIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~ 51 (118)
|+.+++||+.++.. +.++||.
T Consensus 6 L~dLPNig~~~e~~-L~~~GI~ 26 (93)
T 3mab_A 6 LSELPNIGKVLEQD-LIKAGIK 26 (93)
T ss_dssp GGGSTTCCHHHHHH-HHHTTCC
T ss_pred HhhCCCCCHHHHHH-HHHcCCC
Confidence 45556666555433 3445555
No 229
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=26.90 E-value=28 Score=28.99 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=30.6
Q ss_pred hhhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
|+.++|||+++|.+|+..+..-.+. -.-+.-+|...+.+.|.+
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~~-~~r~~~~e~~~~~~~i~~ 172 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQAA-GKRRPLGAVLSLARSLLE 172 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHHH-TCCEEHHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHh-ccceeHHHHHHHHHHHHH
Confidence 6889999999999997655543332 244566777777777664
No 230
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=26.45 E-value=11 Score=23.86 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=7.2
Q ss_pred CCcchhccccc
Q 033487 79 IPDWFLNRQKD 89 (118)
Q Consensus 79 ip~w~~nr~kd 89 (118)
|-.||-|||.-
T Consensus 66 V~~WFqNRR~k 76 (95)
T 2cuf_A 66 VYNWFANRRKE 76 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34688887753
No 231
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=26.34 E-value=49 Score=25.73 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=32.5
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcchhcccc
Q 033487 40 LANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQK 88 (118)
Q Consensus 40 ~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~k 88 (118)
....+++.+|.. . ...||++++..+.+..++ .|.-+.|.+.+--
T Consensus 213 l~~~f~~~~~~~--~-~~~lt~~e~~~i~~l~~~--ky~s~eW~~g~~P 256 (341)
T 1vqz_A 213 LLEYMKKEYPEM--T-EYVFSEEELAEINRIKDT--KFGTWDWNYGKSP 256 (341)
T ss_dssp HHHHHHHHCTTC--E-ECCCCHHHHHHHHHHHHH--TTTCHHHHTCCCC
T ss_pred HHHHHHHhcCCC--C-CCCCCHHHHHHHHHHHHH--hcCCcccccCCCC
Confidence 455677777765 1 278999999999998874 4878899875543
No 232
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=26.08 E-value=1e+02 Score=24.40 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=42.1
Q ss_pred CcchHHHHHHHhCCCC---CCcCCCCCHHHHHHHHHHHhCCCCccCCcchhccccccCCCccceee
Q 033487 37 GRRLANIVCKKADVDM---NKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVV 99 (118)
Q Consensus 37 G~~~A~~Ic~~lgi~~---~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~~~h~i 99 (118)
++.-.+..++..|+.. ......|++++.++|.+++++ +++-.|...|.-..-.-++..++
T Consensus 295 ~p~~vK~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~---~gl~~~~~~~~~~~~~~~~~~~~ 357 (360)
T 4dpp_A 295 NPIGINTALAQLGVSRPVFRLPYVPLPLSKRLEFVKLVKE---IGREHFVGEKDVQALDDDDFILI 357 (360)
T ss_dssp TTHHHHHHHHHHTSSCSEEETTCCCCCHHHHHHHHHHHHH---HCGGGSSSSSCCCCCCGGGCEEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---cCCcccCCcccceeecccceEEe
Confidence 4456788899999863 256778999999999999986 66666766555444444444443
No 233
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=26.07 E-value=43 Score=20.66 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.||++|+..|..+|.+
T Consensus 81 ~Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 81 MIPPADALKIGEYVVA 96 (99)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5999999999999975
No 234
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=25.98 E-value=56 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=22.4
Q ss_pred hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHH
Q 033487 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAE 63 (118)
Q Consensus 31 t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~q 63 (118)
..++-||+.||..+ +.+|+.+ .-+..-+-+.
T Consensus 115 ~~i~aVG~~Ta~aL-~~~G~~~-~~p~~~~ae~ 145 (286)
T 1jr2_A 115 KSVYVVGNATASLV-SKIGLDT-EGETCGNAEK 145 (286)
T ss_dssp SEEEECSHHHHHHH-HHTTCCC-SCCSCSSHHH
T ss_pred CcEEEECHHHHHHH-HHcCCCc-CCCCccCHHH
Confidence 47999999999988 7899987 3333333333
No 235
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=25.71 E-value=46 Score=19.12 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=16.0
Q ss_pred CcCCCCCHHHHHHHHHHHhC
Q 033487 54 KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 54 ~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+..-.||++|+..|..+|..
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 61 MPPNPVTEEEAKILAEWVLS 80 (82)
T ss_dssp CCCCSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33338999999999999963
No 236
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.22 E-value=34 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=18.0
Q ss_pred cchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 38 RRLANIVCKKADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 38 ~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
+..-..+.+...-++ ..+.++.+.|.+.++
T Consensus 15 ~~ql~~Le~~F~~~~-----yPs~~~Re~LA~~ln 44 (102)
T 2da6_A 15 PASQQILYQAYDRQK-----NPSKEEREALVEECN 44 (102)
T ss_dssp HHHHHHHHHHHTTCS-----SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHH
Confidence 334444455555443 467778888888873
No 237
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=25.14 E-value=49 Score=20.09 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
+.||++|+..|..+|..
T Consensus 85 ~~ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSS 101 (103)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999999863
No 238
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=25.08 E-value=74 Score=19.72 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.9
Q ss_pred hhhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHH
Q 033487 31 TSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDN 66 (118)
Q Consensus 31 t~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~ 66 (118)
.++.||.......|++..|+ .++++.--+++..
T Consensus 6 ~~~~~ip~~~I~Riar~~Gv---~rIs~da~~~l~~ 38 (84)
T 2hue_C 6 DNIQGITKPAIRRLARRGGV---KRISGLIYEETRG 38 (84)
T ss_dssp GGCCSSCHHHHHHHHHHTTC---CEECTTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHcCc---hhccHHHHHHHHH
Confidence 47889999999999999997 4566555554443
No 239
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.89 E-value=47 Score=22.14 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHh
Q 033487 57 GELSAAELDNLMVVVA 72 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~ 72 (118)
.+||++|+..|++++.
T Consensus 1 sqLt~eqi~elre~F~ 16 (159)
T 3i5g_C 1 SQLTKDEIEEVREVFD 16 (159)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4799999999999876
No 240
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=24.70 E-value=1e+02 Score=19.13 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=17.8
Q ss_pred CCCcCCCCCHHHHHHHHHHHhC
Q 033487 52 MNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 52 ~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
..+....||++|+..|..+|..
T Consensus 98 ~~Mp~~~Ls~~ei~~l~~Yl~~ 119 (124)
T 3cp5_A 98 TMMTDMALSEEQARAILEYLRQ 119 (124)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 3455568999999999999974
No 241
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=24.39 E-value=75 Score=26.10 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=28.1
Q ss_pred chHHHHHHHhCCCCCCc-C---CCCCHHHHHHHHHHHhC
Q 033487 39 RLANIVCKKADVDMNKR-A---GELSAAELDNLMVVVAN 73 (118)
Q Consensus 39 ~~A~~Ic~~lgi~~~~r-~---~~Ls~~qi~~L~~~i~~ 73 (118)
..+.+..+++|++|+.| + +.|+++.+..|.+.++.
T Consensus 303 ~k~r~~ld~~G~~~~~K~Iv~SdgLde~~i~~L~~~~~~ 341 (446)
T 4hl7_A 303 DKMIAHYQQLGIDPTTKLFIFSDGLDFDQALELCEYFAG 341 (446)
T ss_dssp HHHHHHHHHTTCCGGGSEEEECSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcEEEEcCCCCHHHHHHHHHHhcC
Confidence 45777889999998776 2 77999999999887654
No 242
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=24.37 E-value=41 Score=20.06 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhC
Q 033487 57 GELSAAELDNLMVVVAN 73 (118)
Q Consensus 57 ~~Ls~~qi~~L~~~i~~ 73 (118)
..||++|+..|..+|..
T Consensus 81 ~~ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQ 97 (99)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 46999999999999974
No 243
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.27 E-value=41 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=15.6
Q ss_pred CCCcCCCCCHHHHHHHHHHHhC
Q 033487 52 MNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 52 ~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+....+.||++|.+.|.+.+..
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhh
Confidence 4566889999999999999985
No 244
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=24.12 E-value=37 Score=20.04 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=15.2
Q ss_pred ccCcchHHHHHHHhCCC
Q 033487 35 GIGRRLANIVCKKADVD 51 (118)
Q Consensus 35 GIG~~~A~~Ic~~lgi~ 51 (118)
=|+..+.++|++.+|+.
T Consensus 47 ei~~g~lk~Ilkqagl~ 63 (70)
T 1whz_A 47 ELPKGTFKRILRDAGLT 63 (70)
T ss_dssp SCCHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 48999999999999975
No 245
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=24.06 E-value=30 Score=22.38 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=22.9
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCCCC
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAGEL 59 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~~L 59 (118)
.-+|....+...||+.+|+++.+=-...
T Consensus 26 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 26 QENDYSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp TTSCTTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred HhCChhHhhHHHHHHHhCCcHhhHHHHc
Confidence 3468889999999999999987665555
No 246
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=23.88 E-value=15 Score=28.43 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCCCCccccccchhhccccCCCCeehhhhhh-------hhcccCcchHHHHHHHh
Q 033487 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALT-------SIKGIGRRLANIVCKKA 48 (118)
Q Consensus 1 ~~~~~~~~~~~mvrI~g~~i~~~K~v~~aLt-------~IyGIG~~~A~~Ic~~l 48 (118)
||+.+-..++.|..+.|+.+|.. +.-.|. .+.-+|...|.++|+.+
T Consensus 209 mPi~s~~~~~~~~~~~Gv~iP~~--l~~~l~~~~~d~~~~~~~gi~~a~e~~~~L 261 (310)
T 3apt_A 209 MPVTSYRQLRRFTEVCGASIPGP--LLAKLERHQDDPKAVLEIGVEHAVRQVAEL 261 (310)
T ss_dssp CCCCCTTHHHHHHHTSCCCCCHH--HHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHcCCCCCCHH--HHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 78888778888888999999853 222222 22235555666666544
No 247
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=23.83 E-value=39 Score=21.77 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHHHHh
Q 033487 56 AGELSAAELDNLMVVVA 72 (118)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~ 72 (118)
+.+||++|+..|.+++.
T Consensus 1 Ms~lt~eqi~el~~~F~ 17 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFV 17 (148)
T ss_dssp CCSCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 35789999999988876
No 248
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=23.68 E-value=36 Score=22.65 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=25.1
Q ss_pred hcccCcchHHHHHHHhCCCCCCcCCCC-CHHHH
Q 033487 33 IKGIGRRLANIVCKKADVDMNKRAGEL-SAAEL 64 (118)
Q Consensus 33 IyGIG~~~A~~Ic~~lgi~~~~r~~~L-s~~qi 64 (118)
-.|....+...||+.+|+++.+=-... |++++
T Consensus 28 ~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L 60 (195)
T 2iu5_A 28 SNAYHQISVSDIMQTAKIRRQTFYNYFQNQEEL 60 (195)
T ss_dssp HSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHH
T ss_pred hCCCCeeCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 368888999999999999987766655 45544
No 249
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.52 E-value=15 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHhCCCCccCCcchhccc
Q 033487 58 ELSAAELDNLMVVVANPRQFKIPDWFLNRQ 87 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~ 87 (118)
.++..+...|...+.=. .-.|--||-|||
T Consensus 25 yp~~~~r~~LA~~l~Lt-erQVkvWFqNRR 53 (64)
T 1x2m_A 25 HPDEKRLEGLSKQLDWD-VRSIQRWFRQRR 53 (64)
T ss_dssp SCCHHHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 35566666666666521 122456898887
No 250
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=23.24 E-value=50 Score=29.81 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=26.7
Q ss_pred hHHHHHHHhCCCCCCcCCCCCHHHHHHHHHH
Q 033487 40 LANIVCKKADVDMNKRAGELSAAELDNLMVV 70 (118)
Q Consensus 40 ~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~ 70 (118)
.-..+|+..||+.++..++|++++.+.|-.=
T Consensus 338 ~~~~~~~~~~~~~~~p~~~l~~~~~~~~l~g 368 (972)
T 2r6f_A 338 LLEAVCRHYGIPMDVPVKDLPKEQLDKILYG 368 (972)
T ss_dssp HHHHHHHHHCCCSSCBGGGSCHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCchHHCCHHHHHHHccC
Confidence 3467899999999999999999998877654
No 251
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=22.91 E-value=56 Score=19.11 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhC
Q 033487 58 ELSAAELDNLMVVVAN 73 (118)
Q Consensus 58 ~Ls~~qi~~L~~~i~~ 73 (118)
.||++|+..|..+|..
T Consensus 69 ~ls~~ei~~l~~yl~~ 84 (87)
T 2zon_G 69 AADEATLRAAVAYMMD 84 (87)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7999999999999974
No 252
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=22.67 E-value=37 Score=22.76 Aligned_cols=41 Identities=27% Similarity=0.624 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcch--hccccc
Q 033487 42 NIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWF--LNRQKD 89 (118)
Q Consensus 42 ~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~--~nr~kd 89 (118)
..+|.++.-+- -..||..|++...+.+.+ . +|.|+ .+=|++
T Consensus 37 e~~~~ki~~Sy---r~~ls~~EmE~hl~lL~e---l-lPdWls~~~vR~~ 79 (106)
T 3a4c_A 37 EVVCARMVDSC---QTALSPGEMEKHLVLLAE---L-LPDWLSLHRIRTD 79 (106)
T ss_dssp HHHHHHHHHTS---CCSCCHHHHHHHHHHHHH---H-CTTTEEEEEETTE
T ss_pred HHHHHHHHhhh---hccCCHHHHHHHHHHHHH---h-Ccchheeeeeecc
Confidence 34565555443 456899999999999985 4 89997 555544
No 253
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=22.44 E-value=1.2e+02 Score=18.19 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=12.8
Q ss_pred ccCcchHHHHHHHhCCCCCCcCC
Q 033487 35 GIGRRLANIVCKKADVDMNKRAG 57 (118)
Q Consensus 35 GIG~~~A~~Ic~~lgi~~~~r~~ 57 (118)
.+...+...||+.+|++++--+.
T Consensus 44 ~p~~~~l~~la~~l~v~~~~l~~ 66 (98)
T 3lfp_A 44 APDFEMANRLAKVLKIPVSYLYT 66 (98)
T ss_dssp CCCHHHHHHHHHHHTSCGGGGGC
T ss_pred CCCHHHHHHHHHHHCcCHHHHhC
Confidence 34455556666666666555443
No 254
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=22.33 E-value=68 Score=25.36 Aligned_cols=33 Identities=3% Similarity=-0.004 Sum_probs=29.2
Q ss_pred hHHHHHHH---hCCCCCCcCCCCCHHHHHHHHHHHh
Q 033487 40 LANIVCKK---ADVDMNKRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 40 ~A~~Ic~~---lgi~~~~r~~~Ls~~qi~~L~~~i~ 72 (118)
|..++|.. +|+++.....+++++++..+++.+=
T Consensus 25 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 60 (384)
T 1qyi_A 25 TVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIF 60 (384)
T ss_dssp HHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHcCccccCCCccCCcCCCcHHHHHHHHHHHh
Confidence 56778877 9999999999999999999999883
No 255
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=22.31 E-value=40 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred hhhhcccCcchHHHHHHHhCCCCCCcCCCC
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMNKRAGEL 59 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~~r~~~L 59 (118)
++.+.|||+.++..+ +.+||.. +++|
T Consensus 284 v~~l~GiG~~~~~~L-~~lGI~T---~gdL 309 (459)
T 1t94_A 284 IRKVSGIGKVTEKML-KALGIIT---CTEL 309 (459)
T ss_dssp GGGCTTSCHHHHHHH-HHTTCCB---HHHH
T ss_pred HHhcCCcCHHHHHHH-HHcCCCc---HHHH
Confidence 689999998887655 8999973 4444
No 256
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.14 E-value=1.2e+02 Score=21.59 Aligned_cols=36 Identities=8% Similarity=0.213 Sum_probs=28.6
Q ss_pred cchHHHHHHHhCCCC------CCcCCCCCHHHHHHHHHHHhC
Q 033487 38 RRLANIVCKKADVDM------NKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 38 ~~~A~~Ic~~lgi~~------~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
+..|.-|.+.+|+.. ...++++|-+|+..|.+.-..
T Consensus 71 Ppas~Ll~Ka~g~~kgs~~p~k~~vG~it~~qi~eIA~~K~~ 112 (164)
T 3j21_H 71 PPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKKD 112 (164)
T ss_dssp SSSTTHHHHHHCCCSCCSSTTTCCSCCCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCCCCCCCCCceeeeeeHHHHHHHHHHHHh
Confidence 677888888899832 355899999999999988753
No 257
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=22.10 E-value=96 Score=17.50 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcc
Q 033487 49 DVDMNKRAGELSAAELDNLMVVVANPRQFKIPDW 82 (118)
Q Consensus 49 gi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w 82 (118)
|=+|..+=+..|++|-+.|.++++. |+.-.|
T Consensus 1 gs~p~~~k~~Wt~eED~~L~~~v~~---~G~~~W 31 (60)
T 2d9a_A 1 GSSGSSGKVKWTHEEDEQLRALVRQ---FGQQDW 31 (60)
T ss_dssp CCSCCCCCSCCCHHHHHHHHHHHHH---TCTTCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH---hCCCCH
Confidence 3467788889999999999999986 654456
No 258
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=22.06 E-value=35 Score=22.18 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=20.9
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCC
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAG 57 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~ 57 (118)
.-.|+...+...||+.+|+++..=-.
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~~t~Y~ 48 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVATGTLFH 48 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred HhcCcccCCHHHHHHHhCCChhHHHH
Confidence 34789999999999999999765433
No 259
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=22.06 E-value=35 Score=22.09 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=21.7
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCCCC
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAGEL 59 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~~L 59 (118)
.-+|+...+...||+.+|+++..=-...
T Consensus 22 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 22 AREGLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp HHSCSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred HhcCcccCCHHHHHHHhCCCcchHHHHc
Confidence 3478889999999999999976543333
No 260
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.94 E-value=51 Score=18.91 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=17.6
Q ss_pred hhhhcccCcchHHHHHHHhCCCCC
Q 033487 30 LTSIKGIGRRLANIVCKKADVDMN 53 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi~~~ 53 (118)
....=||.+++-..-+++.|+++.
T Consensus 38 aA~~LGisr~tL~rklkk~gi~~~ 61 (63)
T 3e7l_A 38 TAEEIGIDLSNLYRKIKSLNIRVK 61 (63)
T ss_dssp HHHHHTCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHCcCHHHHHHHHHHhCCCCC
Confidence 345668888888888888888753
No 261
>2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A*
Probab=21.79 E-value=41 Score=28.58 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=40.4
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCCCCCHHHHHHHHHHHhCCCCccCCcchhccccccCCCccceeehhhHHHHHHHHH
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDL 111 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~~~h~i~~dL~~~~~~dI 111 (118)
..+++- ..+.+|.+.+||+ +..||++|+..|.+.- + -+...+| .|+.-.|+.......+
T Consensus 32 ~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~-----~---------~~~~~~~--~~~t~~~~~~i~~~~~ 90 (571)
T 2yfr_A 32 TKAELK-GQVKDIVEESGVD----TSKLTNDQINELNKIN-----F---------SKEAKSG--TQLTYNDFKKIAKTLI 90 (571)
T ss_dssp -CCCCC-HHHHHHHHHTTCC----GGGCCHHHHHHHTTCB-----C---------CCCCSSS--EECCHHHHHHHHHHHH
T ss_pred cccccC-HHHHHHHHHcCCC----hhhcCHHHHHhhhhhh-----c---------ccCCCcc--CcccHHHHHHHHhhhh
Confidence 344553 4678899999998 7899999987765322 2 1223345 5888888887776655
Q ss_pred H
Q 033487 112 E 112 (118)
Q Consensus 112 ~ 112 (118)
+
T Consensus 91 ~ 91 (571)
T 2yfr_A 91 E 91 (571)
T ss_dssp H
T ss_pred c
Confidence 4
No 262
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=21.66 E-value=37 Score=20.29 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCccCCcchhccccccCCCccceeehhhHHHHHHHHHHHHHhC
Q 033487 56 AGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKI 117 (118)
Q Consensus 56 ~~~Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~kd~~tg~~~h~i~~dL~~~~~~dI~rl~~I 117 (118)
+.++|.+|+..-...+.. .+ +|=|---.||. +-..--.+.++-||-|++++
T Consensus 6 lr~~s~~EL~~~l~elk~--El------f~LR~q~atgq---l~n~~~ir~vRr~IARi~Tv 56 (63)
T 3r8s_Y 6 LREKSVEELNTELLNLLR--EQ------FNLRMQAASGQ---LQQSHLLKQVRRDVARVKTL 56 (63)
T ss_dssp TTSCHHHHHHHHHHHHTH--HH------HHHHHHHHTTC---CSCGGGTHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHH--HH------HHHHHHHHhCC---CcCcHHHHHHHHHHHHHHHH
Confidence 566777777755544443 22 34444445552 33445567899999999876
No 263
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=21.66 E-value=27 Score=21.84 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=11.2
Q ss_pred chHHHHHHHhCCCCC
Q 033487 39 RLANIVCKKADVDMN 53 (118)
Q Consensus 39 ~~A~~Ic~~lgi~~~ 53 (118)
..|.++|+.+|++++
T Consensus 14 ~~a~~v~~~lGl~~s 28 (79)
T 4fxe_A 14 ARSYAALEKMGVTPS 28 (79)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHhCCCHH
Confidence 457788888888853
No 264
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.62 E-value=41 Score=21.00 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=19.6
Q ss_pred ehhhhhhhhcccCcchHHHHHHHh
Q 033487 25 KIMFALTSIKGIGRRLANIVCKKA 48 (118)
Q Consensus 25 ~v~~aLt~IyGIG~~~A~~Ic~~l 48 (118)
.-.-.|+.-+.||++.|..|++.+
T Consensus 25 aS~S~lQR~lrIGYnRAArlid~l 48 (73)
T 2ve8_A 25 ASISAVQRKLKIGYNRAARMIEAM 48 (73)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHccChHHHHHHHHHH
Confidence 334567899999999999998765
No 265
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=21.45 E-value=91 Score=21.39 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=23.5
Q ss_pred cchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 38 RRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 38 ~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
...|.++++..||+.+-+.+.|+++.+.
T Consensus 56 ~~~a~~~l~~~Gid~~~~ar~l~~~~~~ 83 (157)
T 3n8i_A 56 DYRGQSCMKRHGIPMSHVARQITKEDFA 83 (157)
T ss_dssp CHHHHHHHHHTTCCCCCCCCBCCHHHHH
T ss_pred CHHHHHHHHHcCcCCCCceeECCHHHcC
Confidence 4578999999999998889999877654
No 266
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.39 E-value=39 Score=21.89 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=26.0
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCCCCC--HHHH
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAGELS--AAEL 64 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls--~~qi 64 (118)
.-+|....+...||+.+|+++..=-.... ++++
T Consensus 20 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L 54 (191)
T 1sgm_A 20 QLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEEL 54 (191)
T ss_dssp HHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHH
T ss_pred HHcCccccCHHHHHHHHCCCchhHHHHccccHHHH
Confidence 34788899999999999999887766663 4444
No 267
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=21.39 E-value=92 Score=21.39 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=26.1
Q ss_pred ccC---cchHHHHHHHhCCCCCCcCCCCCHHHHH
Q 033487 35 GIG---RRLANIVCKKADVDMNKRAGELSAAELD 65 (118)
Q Consensus 35 GIG---~~~A~~Ic~~lgi~~~~r~~~Ls~~qi~ 65 (118)
.+| ...|.++++..||+.+-+.+.|+++.+.
T Consensus 49 ~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~ 82 (161)
T 3jvi_A 49 HEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFK 82 (161)
T ss_dssp TTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHHH
T ss_pred ccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHhc
Confidence 356 4679999999999999999999987765
No 268
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.27 E-value=48 Score=22.01 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=25.6
Q ss_pred hhcccCcchHHHHHHHhCCCCCCcCCCC-CHHHH
Q 033487 32 SIKGIGRRLANIVCKKADVDMNKRAGEL-SAAEL 64 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~~~~r~~~L-s~~qi 64 (118)
.-+|+...+...||+.+|+++..=-... |++++
T Consensus 27 ~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L 60 (217)
T 3nrg_A 27 AQNDYDSVSINRITERAGIAKGSFYQYFADKKDC 60 (217)
T ss_dssp HHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHH
T ss_pred HhcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHH
Confidence 3478888999999999999987766666 44443
No 269
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=21.22 E-value=16 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHhCCCCccCCcchhccc
Q 033487 59 LSAAELDNLMVVVANPRQFKIPDWFLNRQ 87 (118)
Q Consensus 59 Ls~~qi~~L~~~i~~~~~~~ip~w~~nr~ 87 (118)
++..+...|...+.=+ .-.|--||-|||
T Consensus 34 p~~~~r~~LA~~l~l~-e~qVqvWFqNRR 61 (72)
T 2cqx_A 34 PDEKRLKGLSKQLDWS-VRKIQCWFRHRR 61 (72)
T ss_dssp CCHHHHHHHHHHTTCC-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCC-hhhcchhhhhcc
Confidence 3444444555544311 122456888887
No 270
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=21.17 E-value=1.6e+02 Score=20.40 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=28.9
Q ss_pred CcchHHHHHHHhCCCCC------CcCCCCCHHHHHHHHHHHh
Q 033487 37 GRRLANIVCKKADVDMN------KRAGELSAAELDNLMVVVA 72 (118)
Q Consensus 37 G~~~A~~Ic~~lgi~~~------~r~~~Ls~~qi~~L~~~i~ 72 (118)
=+..|.-|.+.+|+.+. ..++++|.+|+..|.+.-.
T Consensus 72 ~Ppas~Ll~kaag~~~gs~~p~~~~vG~it~~qv~eIA~~K~ 113 (145)
T 2ftc_G 72 QPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKA 113 (145)
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCcCcceEcHHHHHHHHHHhC
Confidence 36778888899998653 3578999999999998865
No 271
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=21.11 E-value=1.4e+02 Score=22.39 Aligned_cols=37 Identities=8% Similarity=-0.062 Sum_probs=30.9
Q ss_pred CcchHHHHHHHhCCC----CCCcCCCCCHHHHHHHHHHHhC
Q 033487 37 GRRLANIVCKKADVD----MNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 37 G~~~A~~Ic~~lgi~----~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
++.-.+..++..|+. +......|++++.++|.+.+++
T Consensus 255 ~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 295 (301)
T 3m5v_A 255 NPIPIKTAMYLAGLIESLEFRLPLCSPSKENFAKIEEVMKK 295 (301)
T ss_dssp TTHHHHHHHHHTTSSSCCCCCTTCCCCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCCCCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 455678889999997 5566788999999999999986
No 272
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.06 E-value=72 Score=19.45 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.4
Q ss_pred cCcchHHHHHHHhCCCCC
Q 033487 36 IGRRLANIVCKKADVDMN 53 (118)
Q Consensus 36 IG~~~A~~Ic~~lgi~~~ 53 (118)
+...+...||+.+|++++
T Consensus 42 p~~~~l~~ia~~l~v~~~ 59 (111)
T 1b0n_A 42 PSIQFLEKVSAVLDVSVH 59 (111)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 334455555555555544
No 273
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.99 E-value=23 Score=18.43 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=10.7
Q ss_pred hhhhcccCcchHHHHHHHhCC
Q 033487 30 LTSIKGIGRRLANIVCKKADV 50 (118)
Q Consensus 30 Lt~IyGIG~~~A~~Ic~~lgi 50 (118)
+....||++.+....++..++
T Consensus 27 ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 27 LAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp HHHTTSCCHHHHHHHSCTTC-
T ss_pred HHHHHCCCHHHHHHHHHHccc
Confidence 344555555555555555444
No 274
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=20.83 E-value=51 Score=25.96 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.8
Q ss_pred hhcccCcchHHHHHHHhCCC
Q 033487 32 SIKGIGRRLANIVCKKADVD 51 (118)
Q Consensus 32 ~IyGIG~~~A~~Ic~~lgi~ 51 (118)
.+.|.|...|..+|+++||.
T Consensus 230 ~~~g~G~~~A~~~ve~~~I~ 249 (311)
T 3pz6_A 230 EIPDIGTLSAVRLCEESNVS 249 (311)
T ss_dssp EBTTTBSSHHHHHHHHTTC-
T ss_pred ecCCCCCccHHHHHHHhCCC
Confidence 35678999999999999997
No 275
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=20.74 E-value=1.2e+02 Score=19.55 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=22.8
Q ss_pred HHHHHhCCCCC---CcCCCCCHHHHHHHHHHHhC
Q 033487 43 IVCKKADVDMN---KRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 43 ~Ic~~lgi~~~---~r~~~Ls~~qi~~L~~~i~~ 73 (118)
......+++++ -.+.+|+++|++.|.+|.+.
T Consensus 56 ~~f~~~~~~~~~l~~dl~~L~~~e~~~l~~W~~~ 89 (102)
T 1j03_A 56 RALGKMSKNEEDVSPSLEGLTEKEINTLNDWETK 89 (102)
T ss_dssp HHHHHTCCCSSSCCSSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCChhhccCcccCCCHHHHHHHHHHHHH
Confidence 34456677655 34678999999999998873
No 276
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=20.53 E-value=40 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.4
Q ss_pred hhhhhhcccCcchHHHHHHHhC
Q 033487 28 FALTSIKGIGRRLANIVCKKAD 49 (118)
Q Consensus 28 ~aLt~IyGIG~~~A~~Ic~~lg 49 (118)
.-|..|.||+...|..|+++.+
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~yp 258 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEHYS 258 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHHCS
T ss_pred HHHHhccCCCHHHHHHHHHHCC
Confidence 4568999999999999998876
No 277
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=20.49 E-value=99 Score=24.96 Aligned_cols=35 Identities=17% Similarity=-0.029 Sum_probs=27.8
Q ss_pred chHHHHHHHhCCCCC-CcC---CCCCHHHHHHHHHHHhC
Q 033487 39 RLANIVCKKADVDMN-KRA---GELSAAELDNLMVVVAN 73 (118)
Q Consensus 39 ~~A~~Ic~~lgi~~~-~r~---~~Ls~~qi~~L~~~i~~ 73 (118)
..+.+.++.+|++|. +++ +.|+++.+..|.+.++.
T Consensus 293 ~k~r~~ld~~G~~p~~~~Ii~SdgLde~~i~~l~~~~~~ 331 (407)
T 3os4_A 293 EKAIAHYEKLGIDPMKKVLVFSDNLDLEKALFLYRHFYQ 331 (407)
T ss_dssp HHHHHHHHHTTCCGGGSEEEECSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCcCcCceEEEECCCCCHHHHHHHHHHhcC
Confidence 457778899999974 444 78999999999887664
No 278
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.48 E-value=56 Score=21.64 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=23.6
Q ss_pred hcccCcchHHHHHHHhCCCCCCcCCCCC
Q 033487 33 IKGIGRRLANIVCKKADVDMNKRAGELS 60 (118)
Q Consensus 33 IyGIG~~~A~~Ic~~lgi~~~~r~~~Ls 60 (118)
-+|....+...||+.+|++...=-....
T Consensus 34 ~~G~~~~t~~~IA~~agvs~~tlY~~F~ 61 (216)
T 3qqa_A 34 TKGYQETSLSDIIKLSGGSYSNIYDGFK 61 (216)
T ss_dssp HTCTTTCCHHHHHHHHTTSCCSSSCSCC
T ss_pred HcChhhCCHHHHHHHhCCCHHHHHHhcC
Confidence 4788889999999999999887766663
No 279
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.45 E-value=1e+02 Score=17.83 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=22.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHhC
Q 033487 50 VDMNKRAGELSAAELDNLMVVVAN 73 (118)
Q Consensus 50 i~~~~r~~~Ls~~qi~~L~~~i~~ 73 (118)
++|+.+-+..|.+|=..|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~ 26 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKL 26 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999985
No 280
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.25 E-value=28 Score=26.96 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=29.9
Q ss_pred CCCCCccccccchhhccccCCCCeehhhhhhh-------hcccCcchHHHHHHHh
Q 033487 1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTS-------IKGIGRRLANIVCKKA 48 (118)
Q Consensus 1 ~~~~~~~~~~~mvrI~g~~i~~~K~v~~aLt~-------IyGIG~~~A~~Ic~~l 48 (118)
||+.|-..++.|..+.|+.+|.. +.-.|.. +.-+|-..|.++|+.+
T Consensus 212 mPi~s~~~~~~~~~~~Gv~iP~~--l~~~l~~~~dd~~~~~~~Gi~~a~e~~~~L 264 (304)
T 3fst_A 212 LPVSNFKQAKKLADMTNVRIPAW--MAQMFDGLDDDAETRKLVGANIAMDMVKIL 264 (304)
T ss_dssp CCCSCHHHHHHHHHHHTCCCCHH--HHHHHTTCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHcCCCcCCHH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 67887777888888899999853 2222222 2346667777777655
Done!