BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033489
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|C Chain C, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|D Chain D, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|E Chain E, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|F Chain F, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|G Chain G, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|H Chain H, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|I Chain I, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|J Chain J, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|K Chain K, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
 pdb|3IWK|L Chain L, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From
           Pisum Sativum (Psamadh1)
          Length = 503

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 12  KSLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEP 60
           ++++I   L +G  LG IV+ A    K L CI+ ++S    +L+G   P
Sbjct: 319 ENIKISDPLEEGCRLGPIVSEAQYK-KVLNCISSAKSEGATILTGGRRP 366


>pdb|3G8R|A Chain A, Crystal Structure Of Putative Spore Coat Polysaccharide
           Biosynthesis Protein E From Chromobacterium Violaceum
           Atcc 12472
 pdb|3G8R|B Chain B, Crystal Structure Of Putative Spore Coat Polysaccharide
           Biosynthesis Protein E From Chromobacterium Violaceum
           Atcc 12472
          Length = 350

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 19  VLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKD 75
           +   G+ +  I + +   W  L  I  S+ PVV   +G+      +     LH  KD
Sbjct: 107 IEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGARREDIDKVVSFXLHRGKD 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,110,338
Number of Sequences: 62578
Number of extensions: 110904
Number of successful extensions: 306
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 9
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)