Query 033489
Match_columns 118
No_of_seqs 156 out of 1198
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.6 1.8E-16 6.1E-21 120.6 4.1 59 50-108 8-82 (248)
2 1kca_A Repressor protein CI; g 99.0 6.2E-10 2.1E-14 74.9 7.4 52 50-103 15-72 (109)
3 1umu_A UMUD'; induced mutagene 99.0 3.5E-10 1.2E-14 76.4 6.2 49 50-101 29-78 (116)
4 2hnf_A Repressor protein CI101 98.9 3E-09 1E-13 73.5 7.4 51 50-102 46-102 (133)
5 1jhf_A LEXA repressor; LEXA SO 98.8 1.9E-08 6.7E-13 73.1 7.2 50 50-103 112-162 (202)
6 3k2z_A LEXA repressor; winged 98.6 1.2E-07 4E-12 69.1 7.3 50 50-102 111-161 (196)
7 3bdn_A Lambda repressor; repre 98.5 1.2E-07 4.1E-12 69.8 5.5 52 50-103 142-199 (236)
8 2fjr_A Repressor protein CI; g 95.2 0.037 1.2E-06 38.8 5.5 45 56-104 113-157 (189)
9 3i4o_A Translation initiation 72.2 1.2 4.1E-05 28.0 0.9 27 62-88 33-65 (79)
10 1jt8_A EIF-1A, probable transl 66.1 2.5 8.4E-05 27.8 1.5 10 77-86 59-68 (102)
11 2dgy_A MGC11102 protein; EIF-1 63.8 5.2 0.00018 26.6 2.8 26 62-87 34-64 (111)
12 3cx5_E Cytochrome B-C1 complex 62.6 34 0.0012 24.1 7.2 26 64-91 60-85 (185)
13 1d7q_A Translation initiation 62.3 6.3 0.00022 27.4 3.1 23 63-85 71-93 (143)
14 2qjy_C Ubiquinol-cytochrome C 59.2 35 0.0012 24.1 6.7 66 13-97 8-76 (187)
15 1w4s_A Polybromo, polybromo 1 53.0 17 0.00058 25.3 4.1 46 58-103 5-54 (174)
16 3mlq_E Transcription-repair co 47.1 15 0.00052 22.2 2.7 35 76-112 2-38 (71)
17 4dov_A ORC1, origin recognitio 45.3 30 0.001 24.5 4.3 18 54-72 32-49 (163)
18 1hr0_W Translation initiation 44.0 19 0.00064 21.6 2.7 13 76-88 46-58 (71)
19 1yel_A AT1G16640; CESG, protei 41.1 22 0.00077 22.4 2.9 18 74-91 75-92 (104)
20 1ueb_A EF-P, TT0860, elongatio 40.0 32 0.0011 24.5 3.9 39 55-98 145-184 (184)
21 4a4f_A SurviVal of motor neuro 39.4 55 0.0019 18.9 4.6 32 75-106 7-38 (64)
22 2cqa_A RUVB-like 2; TIP48, TIP 38.5 6.3 0.00021 25.7 -0.1 45 51-98 37-81 (95)
23 3oyy_A EF-P, elongation factor 37.2 34 0.0011 24.6 3.6 39 56-99 151-190 (191)
24 2k1g_A Lipoprotein SPR; soluti 37.0 17 0.00058 24.6 1.9 14 75-88 66-79 (135)
25 1yby_A Translation elongation 35.0 42 0.0014 24.6 3.9 39 55-98 176-215 (215)
26 2eko_A Histone acetyltransfera 34.9 34 0.0012 21.6 3.0 43 55-97 3-50 (87)
27 3pnw_C Tudor domain-containing 34.3 77 0.0026 19.1 5.1 31 75-105 16-46 (77)
28 2lkt_A Retinoic acid receptor 34.3 64 0.0022 20.8 4.5 13 75-87 6-18 (125)
29 1lgp_A Cell cycle checkpoint p 33.8 25 0.00086 22.4 2.3 37 51-88 60-96 (116)
30 2jyx_A Lipoprotein SPR; soluti 32.7 25 0.00087 23.4 2.2 15 74-88 65-79 (136)
31 3mt1_A Putative carboxynorsper 32.6 38 0.0013 26.0 3.5 30 60-89 293-322 (365)
32 2lqk_A Transcriptional regulat 38.8 9.4 0.00032 23.0 0.0 14 76-89 6-19 (70)
33 3iuw_A Activating signal coint 31.9 72 0.0025 19.9 4.1 15 73-87 34-48 (83)
34 2oqk_A Putative translation in 31.2 33 0.0011 22.6 2.5 38 51-88 39-82 (117)
35 4i1k_A B3 domain-containing tr 30.7 51 0.0018 22.3 3.6 16 75-90 115-130 (146)
36 3s52_A Putative fumarylacetoac 30.2 25 0.00087 25.4 2.0 29 61-89 183-213 (221)
37 2wqt_A 2-keto-4-pentenoate hyd 29.4 48 0.0016 24.6 3.5 30 61-90 222-253 (270)
38 2kku_A Uncharacterized protein 28.9 70 0.0024 22.6 4.0 43 58-100 38-87 (161)
39 2k9x_A Tburm1, uncharacterized 28.9 54 0.0019 21.3 3.3 27 62-88 64-98 (110)
40 4dbf_A 2-hydroxyhepta-2,4-dien 28.7 83 0.0028 23.9 4.8 31 60-90 246-278 (288)
41 1wzo_A HPCE; structural genomi 28.5 72 0.0025 23.2 4.3 30 61-90 204-235 (246)
42 4i4a_A Similar to unknown prot 28.4 33 0.0011 21.4 2.2 35 76-115 75-109 (128)
43 2j66_A BTRK, decarboxylase; bu 28.4 40 0.0014 26.2 3.0 27 63-89 347-373 (428)
44 2if6_A Hypothetical protein YI 28.2 27 0.00093 24.2 1.8 10 77-86 5-14 (186)
45 3l53_A Putative fumarylacetoac 27.9 32 0.0011 25.0 2.2 29 60-88 180-210 (224)
46 3r8s_R 50S ribosomal protein L 27.3 68 0.0023 20.7 3.6 34 51-86 3-36 (103)
47 3n29_A Carboxynorspermidine de 26.4 54 0.0018 25.9 3.5 30 60-89 347-376 (418)
48 2qgh_A Diaminopimelate decarbo 26.1 50 0.0017 25.7 3.2 29 61-89 348-376 (425)
49 2qf4_A Cell shape determining 25.7 1.7E+02 0.0057 20.2 6.2 44 74-117 106-153 (172)
50 1wid_A DNA-binding protein RAV 25.5 65 0.0022 21.2 3.3 15 75-89 90-104 (130)
51 3p8d_A Medulloblastoma antigen 25.2 39 0.0013 20.3 1.9 15 57-71 2-16 (67)
52 3khs_A Purine nucleoside phosp 25.1 26 0.0009 26.5 1.3 19 54-72 113-131 (285)
53 2dfu_A Probable 2-hydroxyhepta 25.0 1.4E+02 0.0049 22.0 5.5 39 61-100 218-258 (264)
54 1ah9_A IF1, initiation factor 25.0 23 0.0008 21.0 0.9 26 63-88 26-57 (71)
55 3fuc_A Purine nucleoside phosp 24.9 27 0.00091 26.5 1.3 19 54-72 116-134 (284)
56 1qe5_A Pentosyltransferase; en 24.5 28 0.00095 26.1 1.4 20 53-72 118-137 (266)
57 1twi_A Diaminopimelate decarbo 24.4 56 0.0019 25.4 3.2 29 61-89 357-385 (434)
58 1xne_A Hypothetical protein PF 24.4 63 0.0021 21.2 3.0 23 74-101 32-54 (113)
59 3v2d_V 50S ribosomal protein L 24.3 73 0.0025 20.6 3.2 34 51-86 3-36 (101)
60 1g5v_A SurviVal motor neuron p 24.2 1.3E+02 0.0046 18.6 4.7 30 75-104 9-38 (88)
61 1q90_R Cytochrome B6-F complex 24.1 1E+02 0.0036 17.3 4.8 30 13-42 8-37 (49)
62 1g2o_A Purine nucleoside phosp 24.0 28 0.00097 26.0 1.3 19 54-72 120-138 (268)
63 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 23.7 36 0.0012 25.2 1.8 29 61-89 228-258 (267)
64 2j5u_A MREC protein; bacterial 23.4 2.2E+02 0.0076 20.8 6.9 44 74-117 167-214 (255)
65 1vmk_A Purine nucleoside phosp 23.3 30 0.001 26.1 1.3 21 52-72 121-141 (277)
66 3rr6_A Putative uncharacterize 23.2 52 0.0018 24.7 2.7 30 61-90 222-253 (265)
67 2eqk_A Tudor domain-containing 23.1 1.5E+02 0.005 18.6 5.3 32 75-106 20-51 (85)
68 3odg_A Xanthosine phosphorylas 23.1 31 0.001 26.2 1.4 19 54-72 125-143 (287)
69 3vab_A Diaminopimelate decarbo 22.8 61 0.0021 25.6 3.2 30 60-89 366-395 (443)
70 1pi7_A VPU protein, U ORF prot 22.8 95 0.0033 16.4 3.6 19 23-41 8-26 (36)
71 4ejq_A Kinesin-like protein KI 22.4 42 0.0014 22.8 1.9 32 51-85 102-133 (154)
72 2opk_A Hypothetical protein; p 22.3 1.1E+02 0.0036 19.1 3.7 36 75-115 75-111 (112)
73 1mhn_A SurviVal motor neuron p 22.3 1.1E+02 0.0039 17.1 4.7 28 76-103 3-30 (59)
74 3btn_A Antizyme inhibitor 1; T 22.1 51 0.0017 26.1 2.6 27 63-89 359-385 (448)
75 7odc_A Protein (ornithine deca 22.0 55 0.0019 25.7 2.7 30 60-89 358-387 (424)
76 1f3t_A ODC, ornithine decarbox 21.6 57 0.002 25.4 2.7 29 61-89 359-387 (425)
77 2q18_X 2-keto-3-deoxy-D-arabin 21.3 1.4E+02 0.0047 22.4 4.7 38 61-99 245-287 (293)
78 3v2d_O 50S ribosomal protein L 20.8 1.9E+02 0.0064 19.3 4.8 34 50-83 21-58 (122)
79 3bbo_M Ribosomal protein L14; 20.8 1.8E+02 0.0063 19.3 4.8 34 50-83 21-58 (121)
80 1tcv_A Purine-nucleoside phosp 20.6 36 0.0012 25.7 1.3 18 55-72 119-136 (287)
81 2d9t_A Tudor domain-containing 20.5 1.5E+02 0.0051 17.7 5.1 29 75-103 8-36 (78)
82 2z0t_A Putative uncharacterize 20.5 74 0.0025 20.8 2.7 24 74-101 31-54 (109)
83 4b4a_A TATC, SEC-independent p 20.4 1.4E+02 0.0049 22.0 4.6 15 4-18 3-17 (249)
84 3phb_E Purine nucleoside phosp 20.3 37 0.0013 26.4 1.3 19 54-72 151-169 (324)
85 2oo0_A ODC, ornithine decarbox 20.3 62 0.0021 25.8 2.7 29 61-89 369-397 (471)
86 2ja9_A Exosome complex exonucl 20.2 62 0.0021 22.7 2.4 16 56-71 46-61 (175)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.62 E-value=1.8e-16 Score=120.61 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=51.6
Q ss_pred eEEEeCCCccccCcCCCEEEEecc---------------CCCCCCCcEEEEEeCCC-CcCEEEEEEEECCCceEE
Q 033489 50 VVVVLSGSMEPGFKRGDILFLHMS---------------KDPIRAGEIVVFNVDGR-EIPIVHRVIKVNILLTLF 108 (118)
Q Consensus 50 ~~~V~g~SM~Ptl~~GD~vlv~k~---------------~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g~~~~~ 108 (118)
++.|+|+||+|||++||+|+++|. ..++++||||+|+.|.+ +..++|||+|+|||...+
T Consensus 8 ~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v~i 82 (248)
T 1b12_A 8 PFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTY 82 (248)
T ss_dssp EEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEE
T ss_pred EEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEEEE
Confidence 699999999999999999999983 25799999999998754 457999999999987654
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.04 E-value=6.2e-10 Score=74.89 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=44.8
Q ss_pred eEEEeCCCcc------ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI 103 (118)
Q Consensus 50 ~~~V~g~SM~------Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g 103 (118)
.+.|.|+||+ |+|++||.+++++. .+++.||+|++..++ ++.++||++..++
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~~ 72 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFKKLIRDSG 72 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT-SCCCTTCEEEEECST-TCEEEEEEEEETT
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC-CcCCCCCEEEEEECC-CeEEEEEEEEeCC
Confidence 5899999999 99999999999984 469999999998776 3579999998543
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.04 E-value=3.5e-10 Score=76.37 Aligned_cols=49 Identities=29% Similarity=0.366 Sum_probs=43.1
Q ss_pred eEEEeCCCccc-cCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEE
Q 033489 50 VVVVLSGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKV 101 (118)
Q Consensus 50 ~~~V~g~SM~P-tl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~ 101 (118)
.+.|.|+||+| ++++||.+++++. .+++.||++++..++ +.++||+...
T Consensus 29 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~gdivv~~~~~--~~~vKr~~~~ 78 (116)
T 1umu_A 29 FVKASGDSMIDGGISDGDLLIVDSA-ITASHGDIVIAAVDG--EFTVKKLQLR 78 (116)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEETT-SCCCTTCEEEEEETT--EEEEEEEECS
T ss_pred EEEECCCCcCCCCCCCCCEEEEEcC-CCCCCCCEEEEEECC--EEEEEEEEeC
Confidence 58899999999 8999999999984 359999999999865 4799999874
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.93 E-value=3e-09 Score=73.48 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=44.4
Q ss_pred eEEEeCCCcc------ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102 (118)
Q Consensus 50 ~~~V~g~SM~------Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~ 102 (118)
.+.|.|+||+ |+|++||.+++++. .+++.||+|++..++ ++.++||++..+
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~-~~~~~Gdivv~~~~~-~~~~vKrl~~~~ 102 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE-QAVEPGDFCIARLGG-DEFTFAKLIRDS 102 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT-SCCCTTSEEEEEETT-TEEEEEEEEEET
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC-CCCCCCCEEEEEECC-CEEEEEEEEEeC
Confidence 5889999999 99999999999984 469999999998876 357999999754
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.76 E-value=1.9e-08 Score=73.06 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=42.8
Q ss_pred eEEEeCCCcccc-CcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489 50 VVVVLSGSMEPG-FKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI 103 (118)
Q Consensus 50 ~~~V~g~SM~Pt-l~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g 103 (118)
.+.|.|+||+|+ +++||.+++++. .+++.||++++..++ +.++||+.. ++
T Consensus 112 ~~~v~GdSM~p~~i~~Gd~v~vd~~-~~~~~G~i~v~~~~~--~~~vKrl~~-~~ 162 (202)
T 1jhf_A 112 LLRVSGMSMKDIGIMDGDLLAVHKT-QDVRNGQVVVARIDD--EVTVKRLKK-QG 162 (202)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTSEEEEEETT--EEEEEEEEE-ET
T ss_pred EEEECCCCCCCCCCCCCCEEEEecc-CCcCCCeEEEEEECC--EEEEEEEEE-eC
Confidence 578899999999 999999999984 469999999998754 479999984 44
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.60 E-value=1.2e-07 Score=69.08 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=43.5
Q ss_pred eEEEeCCCc-cccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEEC
Q 033489 50 VVVVLSGSM-EPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVN 102 (118)
Q Consensus 50 ~~~V~g~SM-~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~ 102 (118)
.+.|.|+|| +|++.+||.+++++. ..++.||+|++..++ +.++||+...+
T Consensus 111 ~l~v~GdSM~~p~i~~GD~viv~~~-~~~~~G~ivv~~~~~--~~~vKr~~~~~ 161 (196)
T 3k2z_A 111 LLKVKGESMIEEHICDGDLVLVRRQ-DWAQNGDIVAAMVDG--EVTLAKFYQRG 161 (196)
T ss_dssp EEECCSSTTGGGTCCTTCEEEEEEC-SCCCTTCEEEEEETT--EEEEEEEEEET
T ss_pred EEEEeCCCcCCCCCCCCCEEEEecc-CcCCCCCEEEEEECC--cEEEEEEEEEC
Confidence 589999999 699999999999984 568999999998875 47999998754
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.52 E-value=1.2e-07 Score=69.82 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=43.4
Q ss_pred eEEEeCCCcc------ccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489 50 VVVVLSGSME------PGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNI 103 (118)
Q Consensus 50 ~~~V~g~SM~------Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g 103 (118)
.+.|.|+||+ |++++||.|+|++.. +++.||++++..++. +.++||+...++
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~~-~~~~g~ivv~~~~~~-~~~vKrl~~~~~ 199 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPEQ-AVEPGDFCIARLGGD-EFTFKKLIRGSG 199 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCSS-CCCTTSEEEEESTTT-CCCCEEEECCSS
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCCC-CCCCCcEEEEEECCC-eEEEEEEEEcCC
Confidence 4689999999 999999999999844 699999999987532 469999987443
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=95.21 E-value=0.037 Score=38.82 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEEEECCC
Q 033489 56 GSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVIKVNIL 104 (118)
Q Consensus 56 ~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~ 104 (118)
++|.+.-++||.++|++. ++..|+++++..++ +.++||+...++.
T Consensus 113 ~~~~~v~~~Gd~v~Vd~~--~~~~g~i~vv~~~g--~~~vKrl~~~~~~ 157 (189)
T 2fjr_A 113 TDGMAIRSEGKIYFVDKQ--ASLSDGLWLVDIKG--AISIRELTKLPGR 157 (189)
T ss_dssp SSEEEEEETTEEEEEETT--CCSCSEEEEEEETT--EEEEEEEEEETTT
T ss_pred CCeEEEeeCCcEEEEEcC--CccCCCEEEEEeCC--eEEEEEEEECCCC
Confidence 456665589999999986 48889999998765 4699999987653
No 9
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=72.20 E-value=1.2 Score=28.05 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=16.0
Q ss_pred CcCCCEEEEec------cCCCCCCCcEEEEEeC
Q 033489 62 FKRGDILFLHM------SKDPIRAGEIVVFNVD 88 (118)
Q Consensus 62 l~~GD~vlv~k------~~~~~~~GDIVvf~~~ 88 (118)
+.+|..+...- +.-.+.+||.|.+...
T Consensus 33 l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 33 LENGHKVLAHISGKMRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp ETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEE
T ss_pred eCCCCEEEEEeCcceecCCccCCCCCEEEEEEC
Confidence 34555555542 1334888998888753
No 10
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=66.10 E-value=2.5 Score=27.83 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=6.7
Q ss_pred CCCCcEEEEE
Q 033489 77 IRAGEIVVFN 86 (118)
Q Consensus 77 ~~~GDIVvf~ 86 (118)
+++||.|+..
T Consensus 59 I~~GD~VlVe 68 (102)
T 1jt8_A 59 VREGDVVIVK 68 (102)
T ss_dssp CCSCEEEEEC
T ss_pred ecCCCEEEEE
Confidence 6667777665
No 11
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.85 E-value=5.2 Score=26.60 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=14.3
Q ss_pred CcCCCEEEEecc-----CCCCCCCcEEEEEe
Q 033489 62 FKRGDILFLHMS-----KDPIRAGEIVVFNV 87 (118)
Q Consensus 62 l~~GD~vlv~k~-----~~~~~~GDIVvf~~ 87 (118)
+.+|..+++.-. .--+++||.|+...
T Consensus 34 l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 34 TAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp CTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred eCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 456666666531 11256777777764
No 12
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=62.56 E-value=34 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=16.3
Q ss_pred CCCEEEEeccCCCCCCCcEEEEEeCCCC
Q 033489 64 RGDILFLHMSKDPIRAGEIVVFNVDGRE 91 (118)
Q Consensus 64 ~GD~vlv~k~~~~~~~GDIVvf~~~~~~ 91 (118)
....+-++ .++++.|+.+.++-.++.
T Consensus 60 a~~~v~V~--~s~l~~G~~~~v~~~g~p 85 (185)
T 3cx5_E 60 AMAKVEVN--LAAIPLGKNVVVKWQGKP 85 (185)
T ss_dssp CCCCEEEE--GGGCCTTCEEEEEETTEE
T ss_pred ccCcEEEE--HHHCCCCCeEEEEECCeE
Confidence 34555554 345778888888766553
No 13
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=62.27 E-value=6.3 Score=27.43 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=14.4
Q ss_pred cCCCEEEEeccCCCCCCCcEEEE
Q 033489 63 KRGDILFLHMSKDPIRAGEIVVF 85 (118)
Q Consensus 63 ~~GD~vlv~k~~~~~~~GDIVvf 85 (118)
.+||.|+|..+..+..+|||+--
T Consensus 71 ~~GD~VlVe~~~yd~~KG~Ii~r 93 (143)
T 1d7q_A 71 NTSDIILVGLRDYQDNKADVILK 93 (143)
T ss_dssp CTTCEEEEECSSSSSSCCEEEEE
T ss_pred cCCCEEEEeeccCCCCeEEEEEE
Confidence 46777777764445666776633
No 14
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=59.20 E-value=35 Score=24.11 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeEEEeCCCccccCc---CCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 13 SLQIRQVLTQGVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFK---RGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 13 ~~~~~~i~~~i~~i~~~~~i~~li~~~~~~~~g~~~~~~~V~g~SM~Ptl~---~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
.+..|+++.++...+.++..+.+++.++.+ |.|.-. .+ .+-++ .++++.|+.+.++-.+
T Consensus 8 ~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~---------------~~p~~~~~a~~-~v~v~--ls~l~~G~~~~v~~~g 69 (187)
T 2qjy_C 8 AGTRRDFLYYATAGAGAVATGAAVWPLINQ---------------MNPSADVQALA-SIFVD--VSSVEPGVQLTVKFLG 69 (187)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------TSCCTTTSCCC-CEEEE--CTTCCTTEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCchhhcccc-cEEEE--HHHCCCCCeEEEEECC
Confidence 356778887766655555555555555432 334322 13 33443 4578899999888766
Q ss_pred CCcCEEEE
Q 033489 90 REIPIVHR 97 (118)
Q Consensus 90 ~~~~~ikR 97 (118)
+. .++-|
T Consensus 70 ~p-v~i~r 76 (187)
T 2qjy_C 70 KP-IFIRR 76 (187)
T ss_dssp EE-EEEEE
T ss_pred EE-EEEEE
Confidence 54 34443
No 15
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=53.03 E-value=17 Score=25.30 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=21.3
Q ss_pred ccccCcCCCEEEEec---cCCCCCCCcEEEEEeCCC-CcCEEEEEEEECC
Q 033489 58 MEPGFKRGDILFLHM---SKDPIRAGEIVVFNVDGR-EIPIVHRVIKVNI 103 (118)
Q Consensus 58 M~Ptl~~GD~vlv~k---~~~~~~~GDIVvf~~~~~-~~~~ikRVI~~~g 103 (118)
.+|-...+++.+... ....++.||-|.+++++. ..++|-||..+-.
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~ 54 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWE 54 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEE
T ss_pred CCccccCCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEE
Confidence 346666666665543 234689999999987653 4578888887644
No 16
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=47.14 E-value=15 Score=22.16 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=8.6
Q ss_pred CCCCCcEEEEEeCCCCcC--EEEEEEEECCCceEEEEEE
Q 033489 76 PIRAGEIVVFNVDGREIP--IVHRVIKVNILLTLFFELT 112 (118)
Q Consensus 76 ~~~~GDIVvf~~~~~~~~--~ikRVI~~~g~~~~~~~~~ 112 (118)
.++.||-||+...|-..+ ..+ +...|....|+.|.
T Consensus 2 ~l~~GD~VVh~~hGiG~~~gi~~--~~v~g~~~ey~~l~ 38 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLGLET--REVLGVKRDYLVLR 38 (71)
T ss_dssp --------------CEEEEEEEE--EEETTEEEEEEEEE
T ss_pred cCCCCCEEEECCCeeEEEeEEEE--EEeCCeeEEEEEEE
Confidence 367788888876654211 111 12245556666654
No 17
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=45.32 E-value=30 Score=24.52 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=10.5
Q ss_pred eCCCccccCcCCCEEEEec
Q 033489 54 LSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 54 ~g~SM~Ptl~~GD~vlv~k 72 (118)
+|.| +=+++.||-|+++.
T Consensus 32 ~~~~-~~~i~vGd~VLI~~ 49 (163)
T 4dov_A 32 NDGS-EIHIKVGQFVLIQG 49 (163)
T ss_dssp TTSC-EEEEETTCEEEECC
T ss_pred CCCC-CeEEeeCCEEEEeC
Confidence 4445 55666666666654
No 18
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=43.99 E-value=19 Score=21.55 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=9.7
Q ss_pred CCCCCcEEEEEeC
Q 033489 76 PIRAGEIVVFNVD 88 (118)
Q Consensus 76 ~~~~GDIVvf~~~ 88 (118)
.+.+||.|.++..
T Consensus 46 ~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 46 RILPGDRVVVEIT 58 (71)
T ss_dssp CCCTTCEEEEECC
T ss_pred CCCCCCEEEEEEE
Confidence 4778999888743
No 19
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=41.12 E-value=22 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.5
Q ss_pred CCCCCCCcEEEEEeCCCC
Q 033489 74 KDPIRAGEIVVFNVDGRE 91 (118)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~ 91 (118)
.++++.||+++|+..+..
T Consensus 75 ~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 75 DNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHTCCTTCEEEEEECSSS
T ss_pred HcCCCCCCEEEEEEcCCC
Confidence 357999999999977653
No 20
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=40.01 E-value=32 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=27.8
Q ss_pred CCCccc-cCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEE
Q 033489 55 SGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (118)
Q Consensus 55 g~SM~P-tl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (118)
++++.| ++..|=.|-|-. -++.||.|..+.... -|+.|+
T Consensus 145 ~~~~KpA~letG~~v~VP~---fi~~Gd~I~vdT~~g--~Y~~R~ 184 (184)
T 1ueb_A 145 SGGSKPATLETGAVVQVPL---FVEPGEVIKVDTRTG--EYVGRA 184 (184)
T ss_dssp SCSEEEEEETTSCEEEEET---TCCTTCEEEEETTTT--EEEEEC
T ss_pred CCCCccEEEcCCCEEEeCC---cCcCCCEEEEECCCC--eEeccC
Confidence 456667 567787777742 389999999986644 389885
No 21
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=39.40 E-value=55 Score=18.88 Aligned_cols=32 Identities=3% Similarity=-0.087 Sum_probs=22.7
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEECCCce
Q 033489 75 DPIRAGEIVVFNVDGREIPIVHRVIKVNILLT 106 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~~ 106 (118)
..++.||.+..+...++..|=-+|.++.+++.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~ 38 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG 38 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC
Confidence 45889999988865555567777888776433
No 22
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=38.55 E-value=6.3 Score=25.65 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=25.3
Q ss_pred EEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEE
Q 033489 51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (118)
Q Consensus 51 ~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (118)
.++.+..|+-+|.-|..+.-.-....++.||||-.+.... .++|+
T Consensus 37 itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG---~V~kl 81 (95)
T 2cqa_A 37 LTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATG---KISKL 81 (95)
T ss_dssp EEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTT---EEEEE
T ss_pred EEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCC---EEEEE
Confidence 3445555555554443322221235699999999876544 45554
No 23
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=37.17 E-value=34 Score=24.59 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCccc-cCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEEE
Q 033489 56 GSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRVI 99 (118)
Q Consensus 56 ~SM~P-tl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRVI 99 (118)
+++.| +|..|=.|-|-. -++.||.|..+.... -|+.|+-
T Consensus 151 ~~~KpA~letG~~v~VP~---fi~~Gd~I~VdT~~g--~Y~~R~k 190 (191)
T 3oyy_A 151 KVMKTARLNNGAELQVSA---FCEIGDSIEIDTRTG--EYKSRVK 190 (191)
T ss_dssp -CEEEEEETTSCEEEEET---TCCTTCEEEEETTTT--EEEEEC-
T ss_pred CCCceEEEeCCCEEEeCC---eeeCCCEEEEECCCC--eEhhhcc
Confidence 35666 556777777742 389999999986644 3999973
No 24
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=36.98 E-value=17 Score=24.61 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=10.2
Q ss_pred CCCCCCcEEEEEeC
Q 033489 75 DPIRAGEIVVFNVD 88 (118)
Q Consensus 75 ~~~~~GDIVvf~~~ 88 (118)
+++++||+|.|+.+
T Consensus 66 ~~l~pGDLvFf~~~ 79 (135)
T 2k1g_A 66 SNLRTGDLVLFRAG 79 (135)
T ss_dssp GGCCTTEEEEEEET
T ss_pred HHccCCcEEEECCC
Confidence 45788888888754
No 25
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=35.04 E-value=42 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=27.8
Q ss_pred CCCccc-cCcCCCEEEEeccCCCCCCCcEEEEEeCCCCcCEEEEE
Q 033489 55 SGSMEP-GFKRGDILFLHMSKDPIRAGEIVVFNVDGREIPIVHRV 98 (118)
Q Consensus 55 g~SM~P-tl~~GD~vlv~k~~~~~~~GDIVvf~~~~~~~~~ikRV 98 (118)
+++..| ++..|=.|-|-. -++.||.|..+..... |+.|+
T Consensus 176 ~~~~KpA~leTG~~v~VP~---FI~~Gd~I~VdT~~g~--Y~~R~ 215 (215)
T 1yby_A 176 TGATKPAIVETGASIKVPL---FVNKGDIIRIDTRTGE--YMERV 215 (215)
T ss_dssp SCCEEEEEETTSCEEEEET---TCCTTCEEEEETTTTE--EEEEC
T ss_pred CCCCccEEEeCCcEEEeCC---cEeCCCEEEEECCCCe--EeccC
Confidence 445666 567787777742 3899999999866543 89885
No 26
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.88 E-value=34 Score=21.56 Aligned_cols=43 Identities=28% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCCccccCcCCCEEEEecc----CCCCCCCcEEEEEeC-CCCcCEEEE
Q 033489 55 SGSMEPGFKRGDILFLHMS----KDPIRAGEIVVFNVD-GREIPIVHR 97 (118)
Q Consensus 55 g~SM~Ptl~~GD~vlv~k~----~~~~~~GDIVvf~~~-~~~~~~ikR 97 (118)
++|=.|++..|+.+++... ........|+-.+.. +...+|||-
T Consensus 3 ~~~~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY 50 (87)
T 2eko_A 3 SGSSGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHY 50 (87)
T ss_dssp CCCSSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEE
T ss_pred cccccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEe
Confidence 4577799999999999751 233555666665543 223467774
No 27
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=34.32 E-value=77 Score=19.09 Aligned_cols=31 Identities=6% Similarity=-0.210 Sum_probs=21.3
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEECCCc
Q 033489 75 DPIRAGEIVVFNVDGREIPIVHRVIKVNILL 105 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~ 105 (118)
..++.||.+..+...++..|=-+|.++.+++
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~ 46 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSG 46 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTS
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCC
Confidence 4588888888886544445677777776543
No 28
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=34.31 E-value=64 Score=20.81 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=7.8
Q ss_pred CCCCCCcEEEEEe
Q 033489 75 DPIRAGEIVVFNV 87 (118)
Q Consensus 75 ~~~~~GDIVvf~~ 87 (118)
.+|++||+|.+..
T Consensus 6 ~ep~pGDlI~~~r 18 (125)
T 2lkt_A 6 QEPKPGDLIEIFR 18 (125)
T ss_dssp CCCCTTCEEEEEC
T ss_pred CCCCCCCEEEEeC
Confidence 3566667666643
No 29
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=33.75 E-value=25 Score=22.40 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=26.2
Q ss_pred EEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEEeC
Q 033489 51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNVD 88 (118)
Q Consensus 51 ~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~ 88 (118)
+.+..+|...|+-+|..+--+ ....++.||+|.+-.+
T Consensus 60 ~~l~D~S~NGt~vng~~l~~~-~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 60 VTLEDTSTSGTVINKLKVVKK-QTCPLQTGDVIYLVYR 96 (116)
T ss_dssp EEEEECSSSCCCCCCCCCCCS-SCCCCCTTCEEEEECC
T ss_pred EEEEECCcCCcEECCEEcCCC-CcEECCCCCEEEEecc
Confidence 444448999999888865322 2356999999999754
No 30
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=32.71 E-value=25 Score=23.38 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=10.3
Q ss_pred CCCCCCCcEEEEEeC
Q 033489 74 KDPIRAGEIVVFNVD 88 (118)
Q Consensus 74 ~~~~~~GDIVvf~~~ 88 (118)
.+++++||+|.|+..
T Consensus 65 ~~~l~pGDLvff~~~ 79 (136)
T 2jyx_A 65 RSNLRTGDLVLFRAG 79 (136)
T ss_dssp TTTCCTTEEEEEECS
T ss_pred hHhCCCCCEEEECCC
Confidence 346788888887653
No 31
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=32.62 E-value=38 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=20.4
Q ss_pred ccCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 60 Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
|+=..||.+.-+....++++||.++|.+-|
T Consensus 293 p~C~s~D~l~~~~~~~~l~~GD~l~~~~~G 322 (365)
T 3mt1_A 293 KSCLAGDVFGEFRFAEELKVGDRISFQDAA 322 (365)
T ss_dssp SSCCSSCEEEEEEESSCCCTTCEEEESSCC
T ss_pred CCCCccCEEcccccCCCCCCCCEEEEeccc
Confidence 344567877544434468999999997654
No 32
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=38.76 E-value=9.4 Score=23.01 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=8.3
Q ss_pred CCCCCcEEEEEeCC
Q 033489 76 PIRAGEIVVFNVDG 89 (118)
Q Consensus 76 ~~~~GDIVvf~~~~ 89 (118)
.++.||-|++...|
T Consensus 6 ~f~~GD~VVy~~hG 19 (70)
T 2lqk_A 6 EFRPGDKVVLPPYG 19 (70)
Confidence 45666666665544
No 33
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=31.91 E-value=72 Score=19.93 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=11.9
Q ss_pred cCCCCCCCcEEEEEe
Q 033489 73 SKDPIRAGEIVVFNV 87 (118)
Q Consensus 73 ~~~~~~~GDIVvf~~ 87 (118)
+.++++.||++.|..
T Consensus 34 nDr~~~vGD~l~l~E 48 (83)
T 3iuw_A 34 NDRNFQVGDILILEE 48 (83)
T ss_dssp CCSCCCTTCEEEEEE
T ss_pred cccCCCCCCEEEEEE
Confidence 445699999999963
No 34
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=31.17 E-value=33 Score=22.64 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=21.6
Q ss_pred EEEeCCCcccc-CcCCCEEEEecc-----CCCCCCCcEEEEEeC
Q 033489 51 VVVLSGSMEPG-FKRGDILFLHMS-----KDPIRAGEIVVFNVD 88 (118)
Q Consensus 51 ~~V~g~SM~Pt-l~~GD~vlv~k~-----~~~~~~GDIVvf~~~ 88 (118)
....|++|.-. +.+|..++..-. .-.+.+||.|.+...
T Consensus 39 i~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 39 QRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred EEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 34445455543 456666665431 123678999988754
No 35
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=30.73 E-value=51 Score=22.33 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.5
Q ss_pred CCCCCCcEEEEEeCCC
Q 033489 75 DPIRAGEIVVFNVDGR 90 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~ 90 (118)
++++.||+++|+-.+.
T Consensus 115 n~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRT 130 (146)
T ss_dssp TTCCTTCEEEEEECSS
T ss_pred cCCCCCCEEEEEEecC
Confidence 6799999999997654
No 36
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=30.21 E-value=25 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.594 Sum_probs=17.9
Q ss_pred cCcCCCEEEEecc--CCCCCCCcEEEEEeCC
Q 033489 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDG 89 (118)
Q Consensus 61 tl~~GD~vlv~k~--~~~~~~GDIVvf~~~~ 89 (118)
||++||+++.-.. ...+++||.|...-++
T Consensus 183 tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~g 213 (221)
T 3s52_A 183 TLRAGDIVLTGTPQGVGPMQSGDMLKIMLNG 213 (221)
T ss_dssp CBCTTCEEECCCCSCCEEECTTCEEEEEETT
T ss_pred CcCCCCEEEeCCCCcceecCCCCEEEEEEeC
Confidence 6777777766541 1236777777666543
No 37
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=29.40 E-value=48 Score=24.59 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=22.8
Q ss_pred cCcCCCEEEEec--cCCCCCCCcEEEEEeCCC
Q 033489 61 GFKRGDILFLHM--SKDPIRAGEIVVFNVDGR 90 (118)
Q Consensus 61 tl~~GD~vlv~k--~~~~~~~GDIVvf~~~~~ 90 (118)
+|++||+|+.=. ....+++||.|...-.+-
T Consensus 222 tL~~GdvI~TGT~~g~~~l~~GD~v~~~i~gl 253 (270)
T 2wqt_A 222 PLRTGDIILTGALGPMVAVNAGDRFEAHIEGI 253 (270)
T ss_dssp CBCTTCEEEEEESSCCEECCTTCEEEEEETTT
T ss_pred CcCCCCEEEcCCCCCCeeCCCCCEEEEEEcCC
Confidence 789999998865 223489999998887654
No 38
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=28.94 E-value=70 Score=22.57 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=29.1
Q ss_pred ccccCcCCCEEEEec--cCCCCCCCcEEEEEeCC--C---CcCEEEEEEE
Q 033489 58 MEPGFKRGDILFLHM--SKDPIRAGEIVVFNVDG--R---EIPIVHRVIK 100 (118)
Q Consensus 58 M~Ptl~~GD~vlv~k--~~~~~~~GDIVvf~~~~--~---~~~~ikRVI~ 100 (118)
|+--+++|..+++.+ ....+++||.|+|.... . ++.-|++|+.
T Consensus 38 ~~rIf~~GkK~flrr~~v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~ 87 (161)
T 2kku_A 38 MDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVL 87 (161)
T ss_dssp THHHHHHSCEEEEESSCSCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEE
T ss_pred HHHHHhcCceEEEeccCcccccCCCCEEEEEEcCCCcEEEEEEEEEEEEe
Confidence 333445899988876 23469999998887543 2 2346888886
No 39
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=28.88 E-value=54 Score=21.26 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=19.4
Q ss_pred CcCCCEEEEecc--------CCCCCCCcEEEEEeC
Q 033489 62 FKRGDILFLHMS--------KDPIRAGEIVVFNVD 88 (118)
Q Consensus 62 l~~GD~vlv~k~--------~~~~~~GDIVvf~~~ 88 (118)
+.+|=.|++|.. ...++.||.|+|=++
T Consensus 64 lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 64 LRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp BCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred cCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 555546888751 356999999999654
No 40
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=28.70 E-value=83 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=23.1
Q ss_pred ccCcCCCEEEEecc--CCCCCCCcEEEEEeCCC
Q 033489 60 PGFKRGDILFLHMS--KDPIRAGEIVVFNVDGR 90 (118)
Q Consensus 60 Ptl~~GD~vlv~k~--~~~~~~GDIVvf~~~~~ 90 (118)
=||++||+++.=.. ...+++||.|...-++-
T Consensus 246 ~tL~pGDvI~TGTP~Gvg~l~~GD~v~v~iegi 278 (288)
T 4dbf_A 246 MTLLPGDVIATGSPAGTEAMVDGDYIEIEIPGI 278 (288)
T ss_dssp SCBCTTCEEECCCCSCCCBCCTTCEEEEEETTT
T ss_pred CCcCCCCEEEcCCCCCCeecCCCCEEEEEECCc
Confidence 48899999887642 23589999998887654
No 41
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=28.45 E-value=72 Score=23.21 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=21.2
Q ss_pred cCcCCCEEEEecc--CCCCCCCcEEEEEeCCC
Q 033489 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDGR 90 (118)
Q Consensus 61 tl~~GD~vlv~k~--~~~~~~GDIVvf~~~~~ 90 (118)
||++||+++.-.. ...++.||.|...-.+-
T Consensus 204 tL~pGDvI~TGTp~gvg~l~~GD~v~~~i~gl 235 (246)
T 1wzo_A 204 TLEPYDVLLTGTPKGISQVRPGDVMRLEIEGL 235 (246)
T ss_dssp CBCTTCEEECCCCCCSCEECTTCEEEEEETTS
T ss_pred CcCCCCEEEeCCCCCceECCCCCEEEEEEcCc
Confidence 7889998776541 22478899888877654
No 42
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=28.41 E-value=33 Score=21.44 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCcCEEEEEEEECCCceEEEEEEeee
Q 033489 76 PIRAGEIVVFNVDGREIPIVHRVIKVNILLTLFFELTIQP 115 (118)
Q Consensus 76 ~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~~~~~~~~~~~ 115 (118)
.++.||++.+..+ ..|++....++...++.+.+.|
T Consensus 75 ~l~~Gd~~~i~~~-----~~H~~~~~~~~~~~~~~i~f~~ 109 (128)
T 4i4a_A 75 PVTKGDLIIIPLD-----SEHHVINNNQEDFHFYTIWWDK 109 (128)
T ss_dssp EEETTCEEEECTT-----CCEEEEECSSSCEEEEEEEECH
T ss_pred EECCCcEEEECCC-----CcEEeEeCCCCCEEEEEEEECH
Confidence 4789999988643 4577766666666777766554
No 43
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=28.40 E-value=40 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=18.6
Q ss_pred cCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 63 KRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 63 ~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
..||.+..+....+++.||.++|...+
T Consensus 347 ~s~D~l~~d~~lp~~~~GD~l~~~~~G 373 (428)
T 2j66_A 347 TPEDCLGKDVHVPALYPGDLVCVLNSG 373 (428)
T ss_dssp STTCEEEEEEEESCCCTTCEEEESSCS
T ss_pred CCCcEEEecccCCCCCCCCEEEEeCCC
Confidence 466777666532368999999997543
No 44
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=28.15 E-value=27 Score=24.21 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.8
Q ss_pred CCCCcEEEEE
Q 033489 77 IRAGEIVVFN 86 (118)
Q Consensus 77 ~~~GDIVvf~ 86 (118)
++.||+|.|+
T Consensus 5 l~~GDlvf~~ 14 (186)
T 2if6_A 5 PQTGDIIFQI 14 (186)
T ss_dssp CCTTCEEEEC
T ss_pred CCCCCEEEEE
Confidence 4445554444
No 45
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=27.90 E-value=32 Score=25.00 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=19.0
Q ss_pred ccCcCCCEEEEecc--CCCCCCCcEEEEEeC
Q 033489 60 PGFKRGDILFLHMS--KDPIRAGEIVVFNVD 88 (118)
Q Consensus 60 Ptl~~GD~vlv~k~--~~~~~~GDIVvf~~~ 88 (118)
=||++||+++.-.. ...+++||.|...-+
T Consensus 180 ~tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~ 210 (224)
T 3l53_A 180 FSLQPGDVILTGTPAGVGPLEVGDSLSAKLS 210 (224)
T ss_dssp SCBCTTCEEECCCCSCCEECCTTCEEEEEEE
T ss_pred CCcCCCCEEEcCCCCCCEEcCCCCEEEEEEE
Confidence 37788888776541 123788888876654
No 46
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=27.31 E-value=68 Score=20.72 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=25.6
Q ss_pred EEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEE
Q 033489 51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFN 86 (118)
Q Consensus 51 ~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~ 86 (118)
..|..++-+=-..+||.+.+++. +.+.||.|.|+
T Consensus 3 AIi~~gGkQykV~~Gd~i~vekl--~~~~G~~v~~~ 36 (103)
T 3r8s_R 3 AVFQSGGKQHRVSEGQTVRLEKL--DIATGETVEFA 36 (103)
T ss_dssp EEEECSSSEEEEETTCEEEESCC--CSCTTCEEEEC
T ss_pred EEEEECCEEEEEeCCCEEEECCc--CCCCCCEEEEe
Confidence 45666666666789999999984 36889988885
No 47
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=26.43 E-value=54 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=20.5
Q ss_pred ccCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 60 Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
|+=..||.+.-++...++++||.++|.+-|
T Consensus 347 p~C~s~D~l~~~~~~~~l~~GD~l~~~~~G 376 (418)
T 3n29_A 347 NTCLAGDVMGEYAFDKKLKIGDKIVFLDQI 376 (418)
T ss_dssp SSSCTTCEEEEEEESSCCCTTCEEEESSCS
T ss_pred CCCCCCCEEeecccCCCCCCCCEEEEeCcc
Confidence 455667877533334468999999997654
No 48
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=26.09 E-value=50 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=20.8
Q ss_pred cCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 61 GFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 61 tl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
+=..||.+..+....+++.||.|+|...+
T Consensus 348 ~C~s~D~~~~d~~lp~~~~GD~v~~~~~G 376 (425)
T 2qgh_A 348 VCESSDTFLKDAHLPELEPGDKIAIEKVG 376 (425)
T ss_dssp SSSTTCEEEEEEEECCCCTTCEEEECSCS
T ss_pred CcCCCcEecccccCCCCCCCCEEEEeCCC
Confidence 44577888877633368999999996543
No 49
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=25.69 E-value=1.7e+02 Score=20.16 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=31.0
Q ss_pred CCCCCCCcEEEEEeCCC---CcCEEEEEEEECCC-ceEEEEEEeeecC
Q 033489 74 KDPIRAGEIVVFNVDGR---EIPIVHRVIKVNIL-LTLFFELTIQPCC 117 (118)
Q Consensus 74 ~~~~~~GDIVvf~~~~~---~~~~ikRVI~~~g~-~~~~~~~~~~~~~ 117 (118)
..+++.||.|+=..-+. .+..|.+|..+..+ ...|.++.+.|+.
T Consensus 106 ~~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~~~~~~~~~i~v~p~a 153 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDYLTREVTVKLSA 153 (172)
T ss_dssp CCCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCSSCCEEEEEESC
T ss_pred CCCCCCCCEEEECCCCCcCCCCCEEEEEEEEecCCCCcEEEEEEEECC
Confidence 45799999888654332 24689999998654 4566688888864
No 50
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=25.52 E-value=65 Score=21.21 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.7
Q ss_pred CCCCCCcEEEEEeCC
Q 033489 75 DPIRAGEIVVFNVDG 89 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~ 89 (118)
++++.||+|+|....
T Consensus 90 ~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 90 KNLRAGDVVSFSRSN 104 (130)
T ss_dssp TTCCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 679999999998654
No 51
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=25.17 E-value=39 Score=20.31 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=10.1
Q ss_pred CccccCcCCCEEEEe
Q 033489 57 SMEPGFKRGDILFLH 71 (118)
Q Consensus 57 SM~Ptl~~GD~vlv~ 71 (118)
-|-|.++.||.++..
T Consensus 2 ~~~~~~~vGd~vmAr 16 (67)
T 3p8d_A 2 HMSSEFQINEQVLAC 16 (67)
T ss_dssp ---CCCCTTCEEEEE
T ss_pred CcCcccccCCEEEEE
Confidence 478888888888885
No 52
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=25.10 E-value=26 Score=26.54 Aligned_cols=19 Identities=21% Similarity=0.704 Sum_probs=16.5
Q ss_pred eCCCccccCcCCCEEEEec
Q 033489 54 LSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 54 ~g~SM~Ptl~~GD~vlv~k 72 (118)
.-+|+.|.+++||+|+.+.
T Consensus 113 aaGgl~~~~~~GDlVi~~d 131 (285)
T 3khs_A 113 AAGGLNPSYRPGDFMVVRD 131 (285)
T ss_dssp EEEECSTTCCTTCEEEEEE
T ss_pred ceecCCCCCCCCCEEeehh
Confidence 3469999999999999875
No 53
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=25.02 E-value=1.4e+02 Score=21.97 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.3
Q ss_pred cCcCCCEEEEec--cCCCCCCCcEEEEEeCCCCcCEEEEEEE
Q 033489 61 GFKRGDILFLHM--SKDPIRAGEIVVFNVDGREIPIVHRVIK 100 (118)
Q Consensus 61 tl~~GD~vlv~k--~~~~~~~GDIVvf~~~~~~~~~ikRVI~ 100 (118)
||++||+++.-. ....++.||.|...-.+-. ...-+|.+
T Consensus 218 tL~pGDvI~TGTp~Gvg~l~~GD~v~~~i~glG-~l~~~v~~ 258 (264)
T 2dfu_A 218 TLEPLDVVLTGTPEGVGALRPGDRLEVAVEGVG-TLFTLIGP 258 (264)
T ss_dssp CBCTTCEEECCCCSCCCBCCTTCEEEEEETTTE-EEEEEEEE
T ss_pred CcCCCCEEEeCCCCCccccCCCCEEEEEEeCcE-EEEEEEEe
Confidence 789999887654 1234899999988876643 34445543
No 54
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=25.00 E-value=23 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=16.3
Q ss_pred cCCCEEEEec------cCCCCCCCcEEEEEeC
Q 033489 63 KRGDILFLHM------SKDPIRAGEIVVFNVD 88 (118)
Q Consensus 63 ~~GD~vlv~k------~~~~~~~GDIVvf~~~ 88 (118)
.+|..+...- ..-.+.+||.|.++..
T Consensus 26 ~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 26 ENGHVVTAHISGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp TTSCEEEEEECSSGGGTTCCCCTTCEECCEEC
T ss_pred CCCCEEEEEEcceEeccCccCCCCCEEEEEEe
Confidence 4566665543 1134679999999753
No 55
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=24.92 E-value=27 Score=26.52 Aligned_cols=19 Identities=32% Similarity=0.795 Sum_probs=16.4
Q ss_pred eCCCccccCcCCCEEEEec
Q 033489 54 LSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 54 ~g~SM~Ptl~~GD~vlv~k 72 (118)
.-+|+.|.+++||.|+.+.
T Consensus 116 aaGgl~~~~~~GDlVi~~d 134 (284)
T 3fuc_A 116 AAGGLNPNFEVGDIMLIRD 134 (284)
T ss_dssp EEEECSTTCCTTCEEEEEE
T ss_pred ceecCCCCCCCCCEEEehH
Confidence 3469999999999999875
No 56
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=24.51 E-value=28 Score=26.07 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.1
Q ss_pred EeCCCccccCcCCCEEEEec
Q 033489 53 VLSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 53 V~g~SM~Ptl~~GD~vlv~k 72 (118)
=.-+|+.|.+++||.|+.+.
T Consensus 118 gaaG~l~~~l~~GDlVi~~d 137 (266)
T 1qe5_A 118 NGCGGLNQEWGAGTPVLLSD 137 (266)
T ss_dssp EEEEECCTTSCTTCEEEEEE
T ss_pred cceecCCCCCCCCCEEEEhH
Confidence 33469999999999999986
No 57
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=24.43 E-value=56 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.2
Q ss_pred cCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 61 GFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 61 tl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
+=..||.+..+....+++.||.|+|...+
T Consensus 357 ~C~s~D~~~~d~~lp~~~~GD~v~~~~~G 385 (434)
T 1twi_A 357 LCESSDVFGRDRELDKVEVGDVLAIFDVG 385 (434)
T ss_dssp SSCTTCEEEEEEEEECCCTTCEEEEECCS
T ss_pred CCCCCCEEeeccCCCCCCCCCEEEEeCCC
Confidence 33467887776532368999999997543
No 58
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=24.41 E-value=63 Score=21.24 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=15.2
Q ss_pred CCCCCCCcEEEEEeCCCCcCEEEEEEEE
Q 033489 74 KDPIRAGEIVVFNVDGREIPIVHRVIKV 101 (118)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~~~~ikRVI~~ 101 (118)
.+.+++||.++|+. ...-+|..+
T Consensus 32 ~~~i~vGD~I~f~~-----~l~~~V~~v 54 (113)
T 1xne_A 32 LKDIKRGDKIIFND-----LIPAEVVEV 54 (113)
T ss_dssp TTTCCTTCEEEETT-----TEEEEEEEE
T ss_pred hhccCCCCEEEEcc-----ceEEEEEEE
Confidence 34589999999964 244455544
No 59
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=24.31 E-value=73 Score=20.57 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=24.2
Q ss_pred EEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEEE
Q 033489 51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFN 86 (118)
Q Consensus 51 ~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf~ 86 (118)
..|..++=+=-..+||.+.+++. +.+.||-|.|+
T Consensus 3 AIi~~gGkQykV~~Gd~i~vekl--~~~~G~~v~~~ 36 (101)
T 3v2d_V 3 AIVKTGGKQYRVEPGLKLRVEKL--DAEPGATVELP 36 (101)
T ss_dssp EEEEETTEEEEECTTCEEEESCC--SCCTTCEEEEC
T ss_pred EEEEeCCEEEEEeCCCEEEECCc--CCCCCCEEEEE
Confidence 34555666666789999999983 35788877664
No 60
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.25 E-value=1.3e+02 Score=18.63 Aligned_cols=30 Identities=3% Similarity=-0.017 Sum_probs=20.9
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEECCC
Q 033489 75 DPIRAGEIVVFNVDGREIPIVHRVIKVNIL 104 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~ 104 (118)
..+++||.+..+...++..|=-+|..+.++
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~ 38 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDFK 38 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecCC
Confidence 357888888888755545677777777653
No 61
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=24.05 E-value=1e+02 Score=17.27 Aligned_cols=30 Identities=7% Similarity=-0.009 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033489 13 SLQIRQVLTQGVSLGMIVTSALIIWKALMC 42 (118)
Q Consensus 13 ~~~~~~i~~~i~~i~~~~~i~~li~~~~~~ 42 (118)
.|.+|++++++..-...+..+.++.-++..
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~~~P~v~f 37 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTLALGYGAF 37 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 477899999987665555555455555443
No 62
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=24.00 E-value=28 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=16.7
Q ss_pred eCCCccccCcCCCEEEEec
Q 033489 54 LSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 54 ~g~SM~Ptl~~GD~vlv~k 72 (118)
.-+|+.|.+++||.|+.+.
T Consensus 120 aaG~l~~~l~~GDlVi~~d 138 (268)
T 1g2o_A 120 AAGGLRADLQVGQPVLISD 138 (268)
T ss_dssp EEEECSTTCCTTCEEEEEE
T ss_pred ceecCCCCCCCCCEEEEhH
Confidence 3469999999999999886
No 63
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=23.73 E-value=36 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=18.6
Q ss_pred cCcCCCEEEEec--cCCCCCCCcEEEEEeCC
Q 033489 61 GFKRGDILFLHM--SKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 61 tl~~GD~vlv~k--~~~~~~~GDIVvf~~~~ 89 (118)
||++||+|+.=. ....+++||.|...-.+
T Consensus 228 tL~~GDvI~TGT~~g~~~l~~GD~v~~~i~g 258 (267)
T 2eb4_A 228 QLEAGQIILGGSFTRPVPARKGDTFHVDYGN 258 (267)
T ss_dssp CBCTTCEEECCCSSCCEECCTTCEEEEECGG
T ss_pred CCCCCCEEECCCCCCCEECCCCCEEEEEEcC
Confidence 677888777643 12246788887776543
No 64
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.37 E-value=2.2e+02 Score=20.82 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=31.6
Q ss_pred CCCCCCCcEEEEEeCCC---CcCEEEEEEEECCC-ceEEEEEEeeecC
Q 033489 74 KDPIRAGEIVVFNVDGR---EIPIVHRVIKVNIL-LTLFFELTIQPCC 117 (118)
Q Consensus 74 ~~~~~~GDIVvf~~~~~---~~~~ikRVI~~~g~-~~~~~~~~~~~~~ 117 (118)
..+++.||.|+=..-+. .+..|.+|..+..+ .+.|.++.+.|+.
T Consensus 167 ~~~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~P~a 214 (255)
T 2j5u_A 167 DMKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGA 214 (255)
T ss_dssp TSCCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEEESS
T ss_pred CCCCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEEECC
Confidence 45799999887643222 35789999988654 4677788888875
No 65
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=23.27 E-value=30 Score=26.14 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=17.4
Q ss_pred EEeCCCccccCcCCCEEEEec
Q 033489 52 VVLSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 52 ~V~g~SM~Ptl~~GD~vlv~k 72 (118)
+=.-+|+.|.+++||+|+.+.
T Consensus 121 tgaaG~l~~~l~~GDlVi~~d 141 (277)
T 1vmk_A 121 TNAAGAINPEFKPGEIILVRD 141 (277)
T ss_dssp EEEEEECSTTCCTTCEEEEEE
T ss_pred ecceecCCCCCCCCCEEEEhH
Confidence 333469999999999999886
No 66
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=23.17 E-value=52 Score=24.67 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=21.3
Q ss_pred cCcCCCEEEEecc--CCCCCCCcEEEEEeCCC
Q 033489 61 GFKRGDILFLHMS--KDPIRAGEIVVFNVDGR 90 (118)
Q Consensus 61 tl~~GD~vlv~k~--~~~~~~GDIVvf~~~~~ 90 (118)
||++||+++.=.. ...+++||.|...-++-
T Consensus 222 tL~pGDvI~TGTp~Gvg~l~~GD~v~v~i~gi 253 (265)
T 3rr6_A 222 TLLPGDVILTGTPEGVGPIVDGDTVSVTIEGI 253 (265)
T ss_dssp CBCTTCEEECCCCSCCEECCTTCEEEEEETTT
T ss_pred CcCCCCEEEeCCCCCceeCCCCCEEEEEECCc
Confidence 7888888877541 22478899888877654
No 67
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.12 E-value=1.5e+02 Score=18.64 Aligned_cols=32 Identities=3% Similarity=-0.099 Sum_probs=25.0
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEECCCce
Q 033489 75 DPIRAGEIVVFNVDGREIPIVHRVIKVNILLT 106 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~~~ 106 (118)
-.+++||+|..+.++++.-|=-||.....++.
T Consensus 20 ~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~ 51 (85)
T 2eqk_A 20 VKWENDMHCAVKIQDKNQWRRGQIIRMVTDTL 51 (85)
T ss_dssp CCCCSSCEEEEECSSSCCEEEEEEEEECSSSE
T ss_pred cCccCCCEEEEEeCCCCeEEEEEEEEecCCCe
Confidence 35899999999977665667778888887665
No 68
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=23.05 E-value=31 Score=26.24 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.6
Q ss_pred eCCCccccCcCCCEEEEec
Q 033489 54 LSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 54 ~g~SM~Ptl~~GD~vlv~k 72 (118)
.-+|+.|.+++||+|+.+.
T Consensus 125 aaGgl~~~l~~GDlVi~~d 143 (287)
T 3odg_A 125 AAGSLRPEVLPGSVVMLKD 143 (287)
T ss_dssp EEEESSTTSCTTCEEEEEE
T ss_pred ceeccCCCCCCCCEEEehh
Confidence 3469999999999999876
No 69
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=22.84 E-value=61 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=19.8
Q ss_pred ccCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 60 Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
|+=..||.+.-+..-.++++||.++|.+-+
T Consensus 366 p~C~s~D~l~~~~~lp~l~~GD~l~~~~~G 395 (443)
T 3vab_A 366 PVCETGDYLGLDREVAKPAPGDLIAICTTG 395 (443)
T ss_dssp SSSSTTCEEEEEEEEECCCTTCEEEEESCT
T ss_pred cCCCCCCEEeeccCcCCCCCCCEEEEeCCC
Confidence 444566766554422358999999998654
No 70
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=22.84 E-value=95 Score=16.38 Aligned_cols=19 Identities=21% Similarity=0.552 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033489 23 GVSLGMIVTSALIIWKALM 41 (118)
Q Consensus 23 i~~i~~~~~i~~li~~~~~ 41 (118)
+..+..+++++.++|.+++
T Consensus 8 ivalivalIiaIVVWtiv~ 26 (36)
T 1pi7_A 8 IVALVVAIIIAIVVWSIVI 26 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777765
No 71
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=22.35 E-value=42 Score=22.84 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=21.5
Q ss_pred EEEeCCCccccCcCCCEEEEeccCCCCCCCcEEEE
Q 033489 51 VVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVF 85 (118)
Q Consensus 51 ~~V~g~SM~Ptl~~GD~vlv~k~~~~~~~GDIVvf 85 (118)
+.+.-.|-..|+-+|..| .. ...++.||.|.|
T Consensus 102 ~~~d~~S~ngt~VNG~~i--~~-~~~L~~GD~I~~ 133 (154)
T 4ejq_A 102 VTLEPCEGADTYVNGKKV--TE-PSILRSGNRIIM 133 (154)
T ss_dssp EEEEECTTCCEEETTEEC--CS-CEECCTTCEEEE
T ss_pred EEEecCCCCceEECCEEc--CC-ceECCCCCEEEE
Confidence 455556666777777665 22 235899999988
No 72
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=22.32 E-value=1.1e+02 Score=19.07 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEECCC-ceEEEEEEeee
Q 033489 75 DPIRAGEIVVFNVDGREIPIVHRVIKVNIL-LTLFFELTIQP 115 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVI~~~g~-~~~~~~~~~~~ 115 (118)
..+++||.+.+... .-||+.....+ ...++.+..+|
T Consensus 75 ~~l~~Gd~i~ipa~-----~~H~~~n~~~~~~~~~l~v~~~~ 111 (112)
T 2opk_A 75 RVMRPGDWLHVPAH-----CRHRVAWTDGGEPTVWLAVHCDA 111 (112)
T ss_dssp EEECTTEEEEECTT-----CCEEEEEECSSSCEEEEEEEECC
T ss_pred EEECCCCEEEECCC-----CcEEEEeCCCCCCEEEEEEEEeC
Confidence 35899999999643 35888877654 33344544443
No 73
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=22.27 E-value=1.1e+02 Score=17.06 Aligned_cols=28 Identities=4% Similarity=-0.005 Sum_probs=18.7
Q ss_pred CCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489 76 PIRAGEIVVFNVDGREIPIVHRVIKVNI 103 (118)
Q Consensus 76 ~~~~GDIVvf~~~~~~~~~ikRVI~~~g 103 (118)
.++.||.++.+-.+++..|=-+|..+.+
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcC
Confidence 4678888888765444456667777654
No 74
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=22.07 E-value=51 Score=26.05 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=17.4
Q ss_pred cCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 63 KRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 63 ~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
..||.+..+....+++.||.++|...+
T Consensus 359 ~s~D~l~~d~~lp~l~~GD~l~~~~~G 385 (448)
T 3btn_A 359 DELDQIVESCLLPELNVGDWLIFDNMG 385 (448)
T ss_dssp STTCEEEEEEEEECCCTTCEEEESSCC
T ss_pred CCCCEEeeccccCCCCCCCEEEEcCCC
Confidence 445666555422358999999997554
No 75
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=21.98 E-value=55 Score=25.68 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=19.9
Q ss_pred ccCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 60 PGFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 60 Ptl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
|+=..||.+.-+....++++||.++|.+-|
T Consensus 358 p~C~s~D~l~~~~~Lp~l~~GD~l~~~~~G 387 (424)
T 7odc_A 358 PTCDGLDRIVERCNLPEMHVGDWMLFENMG 387 (424)
T ss_dssp SSSCTTCEEEEEEEEECCCTTCEEEECSCC
T ss_pred CCCCCCCEecccccCCCCCCCCEEEECCCC
Confidence 444566776554422358999999997654
No 76
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=21.59 E-value=57 Score=25.44 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=19.8
Q ss_pred cCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 61 GFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 61 tl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
+=..||.+..+....+++.||.|+|...+
T Consensus 359 ~C~s~D~~~~d~~lp~~~~GD~v~~~~~G 387 (425)
T 1f3t_A 359 TCDGLDQIVERYYLPEMQVGEWLLFEDMG 387 (425)
T ss_dssp SSCTTCEEEEEEEEECCCTTCEEEECSCC
T ss_pred CcCCCCEecccccCCCCCCCCEEEEcCCC
Confidence 33556777766532358999999997654
No 77
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=21.26 E-value=1.4e+02 Score=22.35 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=23.9
Q ss_pred cCcCCCEEEEec---c--CCCCCCCcEEEEEeCCCCcCEEEEEE
Q 033489 61 GFKRGDILFLHM---S--KDPIRAGEIVVFNVDGREIPIVHRVI 99 (118)
Q Consensus 61 tl~~GD~vlv~k---~--~~~~~~GDIVvf~~~~~~~~~ikRVI 99 (118)
||++||+++.-. . ...++.||.|...-.+-. ...-||.
T Consensus 245 tL~pGDvI~TGTg~~p~~~~~l~~GD~v~~~i~glG-~l~n~v~ 287 (293)
T 2q18_X 245 PIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIG-TLITPVK 287 (293)
T ss_dssp CCCTTEEEECCCSCCCCTTCCCCTTCEEEEEETTTE-EEEEEEE
T ss_pred CCCCCCEEECCCCCCCCCCcccCCCCEEEEEEcCcE-EEEEEEE
Confidence 678888877643 1 134788888888776542 2444443
No 78
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=20.85 E-value=1.9e+02 Score=19.28 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=25.2
Q ss_pred eEEEeCCCccccCcCCCEEEEec----cCCCCCCCcEE
Q 033489 50 VVVVLSGSMEPGFKRGDILFLHM----SKDPIRAGEIV 83 (118)
Q Consensus 50 ~~~V~g~SM~Ptl~~GD~vlv~k----~~~~~~~GDIV 83 (118)
...|.|+|=...-..||.+.+.- +...+++||++
T Consensus 21 cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~ 58 (122)
T 3v2d_O 21 CIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVV 58 (122)
T ss_dssp EEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEE
T ss_pred EEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEE
Confidence 56788888778788999988863 33457788875
No 79
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.80 E-value=1.8e+02 Score=19.28 Aligned_cols=34 Identities=15% Similarity=0.389 Sum_probs=25.5
Q ss_pred eEEEeCCCccccCcCCCEEEEec----cCCCCCCCcEE
Q 033489 50 VVVVLSGSMEPGFKRGDILFLHM----SKDPIRAGEIV 83 (118)
Q Consensus 50 ~~~V~g~SM~Ptl~~GD~vlv~k----~~~~~~~GDIV 83 (118)
...|.|+|-...-..||.+.+.- +...+++||++
T Consensus 21 cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~ 58 (121)
T 3bbo_M 21 CIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVI 58 (121)
T ss_dssp EEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEE
T ss_pred EEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEE
Confidence 46788888887788999988863 33457889875
No 80
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=20.64 E-value=36 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=16.2
Q ss_pred CCCccccCcCCCEEEEec
Q 033489 55 SGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 55 g~SM~Ptl~~GD~vlv~k 72 (118)
-+|+.|.+++||.|+.+.
T Consensus 119 aG~l~~~~~~GDlVi~~d 136 (287)
T 1tcv_A 119 AGGLNRSLKLGDFVILKD 136 (287)
T ss_dssp EEECSTTCCTTCEEEEEE
T ss_pred eeecCCCCCCCCEEEEHH
Confidence 479999999999999875
No 81
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=20.48 E-value=1.5e+02 Score=17.71 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=19.0
Q ss_pred CCCCCCcEEEEEeCCCCcCEEEEEEEECC
Q 033489 75 DPIRAGEIVVFNVDGREIPIVHRVIKVNI 103 (118)
Q Consensus 75 ~~~~~GDIVvf~~~~~~~~~ikRVI~~~g 103 (118)
..++.||.++.+...++..|=-+|..+.+
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~ 36 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHS 36 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECS
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeC
Confidence 35788888888765444456666776654
No 82
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=20.47 E-value=74 Score=20.78 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=15.2
Q ss_pred CCCCCCCcEEEEEeCCCCcCEEEEEEEE
Q 033489 74 KDPIRAGEIVVFNVDGREIPIVHRVIKV 101 (118)
Q Consensus 74 ~~~~~~GDIVvf~~~~~~~~~ikRVI~~ 101 (118)
...+++||.++|+ ++ ...-+|..+
T Consensus 31 ~~~ikvGD~I~f~--~~--~l~~~V~~v 54 (109)
T 2z0t_A 31 RRQIKPGDIIIFE--GG--KLKVKVKGI 54 (109)
T ss_dssp GGGCCTTCEEEEG--GG--TEEEEEEEE
T ss_pred hhcCCCCCEEEEC--CC--EEEEEEEEE
Confidence 3458999999992 21 255555554
No 83
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=20.41 E-value=1.4e+02 Score=21.97 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=9.3
Q ss_pred hHHHHHHHHhhhHHH
Q 033489 4 IGESIESIKSLQIRQ 18 (118)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (118)
+.+|++++|+...+-
T Consensus 3 l~~HL~ELR~Rli~~ 17 (249)
T 4b4a_A 3 LTEHLRELRYRLIIS 17 (249)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999988844443
No 84
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}
Probab=20.34 E-value=37 Score=26.37 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=16.3
Q ss_pred eCCCccccCcCCCEEEEec
Q 033489 54 LSGSMEPGFKRGDILFLHM 72 (118)
Q Consensus 54 ~g~SM~Ptl~~GD~vlv~k 72 (118)
.-+|+.|.+++||+|+.+.
T Consensus 151 aaGgL~~~l~~GDlVi~~d 169 (324)
T 3phb_E 151 AAGGLNPKFEVGDIMLIRD 169 (324)
T ss_dssp EEEECSTTCCTTCEEEEEE
T ss_pred ceeecCCCCCCCCEEEEhh
Confidence 3469999999999999875
No 85
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=20.34 E-value=62 Score=25.84 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=19.7
Q ss_pred cCcCCCEEEEeccCCCCCCCcEEEEEeCC
Q 033489 61 GFKRGDILFLHMSKDPIRAGEIVVFNVDG 89 (118)
Q Consensus 61 tl~~GD~vlv~k~~~~~~~GDIVvf~~~~ 89 (118)
+=..||.+..+....+++.||.++|...+
T Consensus 369 ~C~s~D~l~~d~~lp~l~~GD~l~~~~~G 397 (471)
T 2oo0_A 369 TCDGLDRIVERCDLPEMHVGDWMLFENMG 397 (471)
T ss_dssp SSCTTCEEEEEEEEECCCTTCEEEECSCC
T ss_pred CCCCCCEEeeccCCCCCCCCCEEEEeCCC
Confidence 44566777666532358999999997654
No 86
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=20.23 E-value=62 Score=22.74 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.6
Q ss_pred CCccccCcCCCEEEEe
Q 033489 56 GSMEPGFKRGDILFLH 71 (118)
Q Consensus 56 ~SM~Ptl~~GD~vlv~ 71 (118)
..|.|.|+.||+|...
T Consensus 46 k~~r~~l~~GDlV~Ar 61 (175)
T 2ja9_A 46 KKNRPTLQVGDLVYAR 61 (175)
T ss_dssp SSSCCCCCTTCEEEEE
T ss_pred hhhhccCCCCCEEEEE
Confidence 5688888888888764
Done!