BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033491
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OR2|A Chain A, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
           (Dsrii)
 pdb|3OR2|D Chain D, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
           (Dsrii)
          Length = 435

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 27  FPLISAFVAFTIAQ-CAKFFTAWYKERRWDLKQLIGSGGMPSSHSAT 72
           FP ++ F    +AQ  AK++TA Y E   D+  L GS G+ + H +T
Sbjct: 89  FPGVAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGS-GLTNMHGST 134


>pdb|3OR1|A Chain A, Crystal Structure Of Dissimilatory Sulfite Reductase I
           (Dsri)
 pdb|3OR1|D Chain D, Crystal Structure Of Dissimilatory Sulfite Reductase I
           (Dsri)
          Length = 437

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 27  FPLISAFVAFTIAQ-CAKFFTAWYKERRWDLKQLIGSGGMPSSHSAT 72
           FP ++ F    +AQ  AK++TA Y E   D+  L GS G+ + H +T
Sbjct: 91  FPGVAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGS-GLTNMHGST 136


>pdb|2UZ3|A Chain A, Crystal Structure Of Thymidine Kinase With Dttp From U.
          Urealyticum
 pdb|2UZ3|B Chain B, Crystal Structure Of Thymidine Kinase With Dttp From U.
          Urealyticum
 pdb|2UZ3|C Chain C, Crystal Structure Of Thymidine Kinase With Dttp From U.
          Urealyticum
 pdb|2UZ3|D Chain D, Crystal Structure Of Thymidine Kinase With Dttp From U.
          Urealyticum
          Length = 243

 Score = 25.0 bits (53), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 68 SHSATVTALAMAVGFQEGFGGPLFA 92
          SH A V A +  +G+ E   GP+FA
Sbjct: 19 SHMAKVNAFSKKIGWIEFITGPMFA 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,764,593
Number of Sequences: 62578
Number of extensions: 88651
Number of successful extensions: 177
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 3
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)