BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033492
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%)
Query: 26 GALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
G ++GG +P+ + + H++++ +FAVTE+NK++ S L+FE + + QVV+GT Y +
Sbjct: 6 GPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIE 65
Query: 86 VKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
VK+G + K +EA VWEKPW FK L FKP+
Sbjct: 66 VKEGDAKKLYEAKVWEKPWMDFKELQEFKPV 96
>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
Length = 139
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 20 AAGDRKGALVGGWK--PIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSG 77
A R+ +VG + P + +E+ +FAV E+N ++ + L+FE + K QVV+G
Sbjct: 37 AHNGRRVGMVGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAMLEFERLVKVRHQVVAG 96
Query: 78 TNYRLILVVKDGPSTKK-FEAVVWEKPWEHFKSLTSFKPM 116
T + + VK+ KK +EA VWEK WE+FK L SF+P+
Sbjct: 97 TMHHFTVQVKEAGGGKKLYEAKVWEKVWENFKQLQSFQPV 136
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 27 ALVGGWKPIEDPKEK-HVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILV 85
AL+GG +E + V E+ +FAV E+NK+ + L+F + K + QVVSG + L +
Sbjct: 1 ALMGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVE 60
Query: 86 VKDGPSTKKFEAVVWEKPWEHFKSLTSFKPM 116
V +G K +EA VW + W + K L F P+
Sbjct: 61 VIEGGKKKVYEAKVWVQAWLNSKKLHEFSPI 91
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 45 EIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPW 104
++ +FAV EYN ++ + L+F V K + QVVSG + L + V D K +EA VWE+ W
Sbjct: 61 DLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDAGKKKLYEAKVWEQVW 120
Query: 105 EHFKSLTSF 113
+F+ L F
Sbjct: 121 MNFRQLQEF 129
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 35 IEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKK 94
+ +P E+ +FA+ +YNK+ + L+F + QVV+G Y + L D KK
Sbjct: 5 VPNPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKK 64
Query: 95 -FEAVVWEKPWEHFKSLTSFK 114
++A +W K WE FK + FK
Sbjct: 65 IYKAKIWVKEWEDFKKVVEFK 85
>pdb|3L0R|A Chain A, Crystal Structure Of Salivary Cystatin From The Soft Tick
Ornithodoros Moubata
pdb|3L0R|B Chain B, Crystal Structure Of Salivary Cystatin From The Soft Tick
Ornithodoros Moubata
Length = 115
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 20/107 (18%)
Query: 27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLIL-- 84
++ GGW +DP E +E+ FA + + + +V++ ETQVV+G NY+L +
Sbjct: 2 SIPGGWTR-QDPTEARFLELAHFATSSQTEGREFYDTVVTVKEVETQVVAGMNYKLTIEI 60
Query: 85 -----------------VVKDGPSTKKFEAVVWEKPWEHFKSLTSFK 114
V KD AV++ PW++ KS+TS++
Sbjct: 61 SPSVCKIGEVQYSAEQCVPKDAQQKSTCVAVIYHVPWQNQKSVTSYR 107
>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2
Length = 115
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESVE---KGETQVVSGTNYRLI 83
AL GG++ + + +E+ +A + ++ Q F++V K ETQ V+GTNYRL
Sbjct: 4 ALRGGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNYRLT 63
Query: 84 LVVKDG 89
L V +
Sbjct: 64 LKVAES 69
>pdb|3MWZ|A Chain A, Crystal Structure Of The Selenomethionine Derivative Of
The L 22,47, 100 M Mutant Of Sialostatin L2
Length = 115
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 27 ALVGGWKPIEDPKEKHVMEIGQFAVTEYNKQSKSALKFESV---EKGETQVVSGTNYRLI 83
AL GG++ + + +E +A + ++ Q F++V K ETQ V+GTNYRL
Sbjct: 4 ALRGGYRERSNQDDPEYLEXAHYATSTWSAQQPGKTHFDTVVEVXKVETQTVAGTNYRLT 63
Query: 84 LVVKDG 89
L V +
Sbjct: 64 LKVAES 69
>pdb|3LI7|A Chain A, Crystal Structure Of Sialostatin L
pdb|3LI7|B Chain B, Crystal Structure Of Sialostatin L
pdb|3LI7|C Chain C, Crystal Structure Of Sialostatin L
pdb|3LI7|D Chain D, Crystal Structure Of Sialostatin L
Length = 115
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 44 MEIGQFAVTEYNKQSKSALKFESVE---KGETQVVSGTNYRLILVVKD 88
+ + +A + ++ Q F++V K ETQVV+GTNYRL L V +
Sbjct: 21 LNLAHYATSTWSAQQPGKTHFDTVAEVVKVETQVVAGTNYRLTLKVAE 68
>pdb|3PS8|A Chain A, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|A Chain A, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|B Chain B, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|C Chain C, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|D Chain D, Crystal Structure Of L68v Mutant Of Human Cystatin C
Length = 120
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 28 LVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRLIL 84
LVGG P++ +E+ V FAV EYNK S +++ + Q+V+G NY L +
Sbjct: 9 LVGG--PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDV 66
Query: 85 VVKDGPSTK 93
V TK
Sbjct: 67 EVGRTTCTK 75
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 44 MEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKP 103
+EI F V YNK+ K ++S + + +SGT R + P W
Sbjct: 555 LEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVL 614
Query: 104 WEHFKSL 110
E++KSL
Sbjct: 615 TEYYKSL 621
>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
pdb|2QJF|B Chain B, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
Length = 405
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 44 MEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKP 103
+EI F V YNK+ K ++S + + +SGT R + P W
Sbjct: 336 LEIVPFRVAAYNKKKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKPPEGFMAPKAWTVL 395
Query: 104 WEHFKSL 110
E++KSL
Sbjct: 396 TEYYKSL 402
>pdb|1G96|A Chain A, Human Cystatin C; Dimeric Form With 3d Domain Swapping
pdb|1TIJ|A Chain A, 3d Domain-Swapped Human Cystatin C With Amyloid-Like
Intermolecular Beta-Sheets
pdb|1TIJ|B Chain B, 3d Domain-Swapped Human Cystatin C With Amyloid-Like
Intermolecular Beta-Sheets
Length = 120
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 28 LVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRL 82
LVGG P++ +E+ V FAV EYNK S +++ + Q+V+G NY L
Sbjct: 9 LVGG--PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFL 64
>pdb|3GAX|A Chain A, Crystal Structure Of Monomeric Human Cystatin C
Stabilized A Aggregation
pdb|3GAX|B Chain B, Crystal Structure Of Monomeric Human Cystatin C
Stabilized A Aggregation
Length = 120
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 28 LVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRL 82
LVGG P++ +E+ V FAV EYNK S + + + Q+V+G NY L
Sbjct: 9 LVGG--PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAGVNYFL 64
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 47 GQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKF 95
G+F + +YNK SKS F +V+ E Q S ++R + + + KF
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKF 338
>pdb|1YVB|I Chain I, The Plasmodium Falciparum Cysteine Protease Falcipain-2
Length = 111
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 28 LVGGWKPIEDPKEKHVMEIGQFAVTEYNKQS--KSALKFESVEKGETQVVSGTNYRLILV 85
L+G P+ D ++ + QFA+ EYN+ S K + + V + Q+VSG Y IL
Sbjct: 2 LLGAPVPV-DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKY--ILQ 58
Query: 86 VKDGPST 92
V+ G +T
Sbjct: 59 VEIGRTT 65
>pdb|1R4C|A Chain A, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|B Chain B, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|C Chain C, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|D Chain D, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|E Chain E, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|F Chain F, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|G Chain G, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|H Chain H, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
Length = 110
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 39 KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRL 82
+E+ V FAV EYNK S +++ + Q+V+G NY L
Sbjct: 9 EEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFL 54
>pdb|1A90|A Chain A, Recombinant Mutant Chicken Egg White Cystatin, Nmr, 31
Structures
Length = 108
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 37 DPKEKHVMEIGQFAVTEYNKQS--KSALKFESVEKGETQVVSGTNYRLILVVKDGPST 92
D ++ + QFA+ EYN+ S K + + V + Q+VSG Y IL V+ G +T
Sbjct: 7 DENDEGLQRALQFAIAEYNRASNDKYSSRVVRVISAKRQLVSGIKY--ILQVEIGRTT 62
>pdb|3S67|A Chain A, Crystal Structure Of V57p Mutant Of Human Cystatin C
Length = 120
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 28 LVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRL 82
LVGG P++ +E+ V FAV EYNK S +++ + Q+ +G NY L
Sbjct: 9 LVGG--PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIPAGVNYFL 64
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 69 KGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLTS 112
+G+ VV G N I+ DGP T K E +W KP E S TS
Sbjct: 133 RGDLAVVVGRN---IIHGSDGPETAKDEIKLWFKP-EELVSFTS 172
>pdb|3NX0|A Chain A, Hinge-Loop Mutation Can Be Used To Control 3d Domain
Swapping And Amyloidogenesis Of Human Cystatin C
pdb|3NX0|B Chain B, Hinge-Loop Mutation Can Be Used To Control 3d Domain
Swapping And Amyloidogenesis Of Human Cystatin C
Length = 120
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 28 LVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRL 82
LVGG P++ +E+ V FAV EYNK S +++ + Q+ +G NY L
Sbjct: 9 LVGG--PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQINAGVNYFL 64
>pdb|3SVA|A Chain A, Crystal Structure Of V57d Mutant Of Human Cystatin C
Length = 120
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 28 LVGGWKPIEDP-KEKHVMEIGQFAVTEYNKQSKSALKFESVE--KGETQVVSGTNYRL 82
LVGG P++ +E+ V FAV EYNK S +++ + Q+ +G NY L
Sbjct: 9 LVGG--PMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIDAGVNYFL 64
>pdb|1CEW|I Chain I, The 2.0 Angstroms X-Ray Crystal Structure Of Chicken Egg
White Cystatin And Its Possible Mode Of Interaction
With Cysteine Proteinases
pdb|1A67|A Chain A, Chicken Egg White Cystatin Wildtype, Nmr, 16 Structures
Length = 108
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 37 DPKEKHVMEIGQFAVTEYNKQS--KSALKFESVEKGETQVVSGTNYRLILVVKDGPST 92
D ++ + QFA+ EYN+ S K + + V + Q+VSG Y IL V+ G +T
Sbjct: 7 DENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSGIKY--ILQVEIGRTT 62
>pdb|3I0P|A Chain A, Crystal Structure Of Malate Dehydrogenase From Entamoeba
Histolytica
Length = 365
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 23 DRKGALVGGWKPIEDPKE 40
D+ A + G KPIEDPKE
Sbjct: 203 DKSWASMKGGKPIEDPKE 220
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 40 EKHVMEIGQFAVTEYNKQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVV 99
E V E+GQ K ++ ++ ++ G+ Y LIL D PS KK V
Sbjct: 27 EAEVEELGQVLTPTQVKHRPGSISWDGLDPGKL-------YTLILTDPDAPSRKK--PVY 77
Query: 100 WEKPWEHF 107
E W HF
Sbjct: 78 RE--WHHF 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,407,164
Number of Sequences: 62578
Number of extensions: 121009
Number of successful extensions: 452
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 51
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)