AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>033493
MDDFSDSVSTTSSSSSSSSSSSIITNFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLI
GSGGMPSSHSATVTALAMAVGFQEGFGGPLFATALILACVVMYDATGVRLQAGRQAEV

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G67600 AT1G67600 AT1G67600	protein from Arabidopsis thaliana	3.0e-37
BLAST match view associations BLAST with AT3G21610 AT3G21610 AT3G21610	protein from Arabidopsis thaliana	8.5e-33
BLAST match view associations BLAST with BAS3352 BAS3352 BAS3352 Uncharacterized protein	protein from Bacillus anthracis	2.0e-17
BLAST match view associations BLAST with BA_3613 BA_3613 BA_3613 conserved hypothetical protein	protein from Bacillus anthracis str. Ames	2.0e-17
BLAST match view associations BLAST with LMOf2365_2359 LMOf2365_2359 LMOf2365_2359 Putative uncharacterized protein	protein from Listeria monocytogenes serotype 4b str. F2365	1.1e-16
BLAST match view associations BLAST with AT3G61770 AT3G61770 AT3G61770	protein from Arabidopsis thaliana	6.0e-16
BLAST match view associations BLAST with AT3G12685 AT3G12685 AT3G12685	protein from Arabidopsis thaliana	9.1e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033493
        (118 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008575 - symbol:AT1G67600 "AT1G67600" species...   400  3.0e-37   1
TAIR|locus:2089950 - symbol:AT3G21610 "AT3G21610" species...   358  8.5e-33   1
UNIPROTKB|Q81YD7 - symbol:BAS3352 "Uncharacterized protei...   213  2.0e-17   1
TIGR_CMR|BA_3613 - symbol:BA_3613 "conserved hypothetical...   213  2.0e-17   1
UNIPROTKB|Q71X40 - symbol:LMOf2365_2359 "Putative unchara...   206  1.1e-16   1
TAIR|locus:2076790 - symbol:AT3G61770 "AT3G61770" species...   199  6.0e-16   1
TAIR|locus:505006336 - symbol:AT3G12685 "AT3G12685" speci...   169  9.1e-13   1


>TAIR|locus:2008575 [details] [associations]
            symbol:AT1G67600 "AT1G67600" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0016036 "cellular response to phosphate
            starvation" evidence=RCA] [GO:0019375 "galactolipid biosynthetic
            process" evidence=RCA] [GO:0045892 "negative regulation of
            transcription, DNA-dependent" evidence=RCA] EMBL:CP002684
            GO:GO:0004601 EMBL:AC008113 HOGENOM:HOG000067103 InterPro:IPR003832
            Pfam:PF02681 EMBL:AY086822 EMBL:BT024865 IPI:IPI00548895 PIR:E96699
            RefSeq:NP_176927.1 UniGene:At.35629 EnsemblPlants:AT1G67600.1
            GeneID:843081 KEGG:ath:AT1G67600 TAIR:At1g67600 InParanoid:Q9FXC5
            KO:K09775 OMA:SHYISIF PhylomeDB:Q9FXC5 ProtClustDB:CLSN2682001
            Genevestigator:Q9FXC5 Uniprot:Q9FXC5
        Length = 163

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 77/96 (80%), Positives = 85/96 (88%)

Query:    23 IITNFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLIGSGGMPSSHSATVTALAMAVGF 82
             I TN+PLISA +AFTIAQ  KFFT+WYKERRWDLK+L+GSGGMPSSHSATVTALA+AVG 
Sbjct:    15 IFTNYPLISAVLAFTIAQFIKFFTSWYKERRWDLKRLVGSGGMPSSHSATVTALALAVGL 74

Query:    83 QEGFGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
             QEGFGG  FA AL+L  +VMYDATGVRL AGRQAEV
Sbjct:    75 QEGFGGSHFAIALVLTTIVMYDATGVRLHAGRQAEV 110


>TAIR|locus:2089950 [details] [associations]
            symbol:AT3G21610 "AT3G21610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0004601 EMBL:AY128368 EMBL:BT000347
            IPI:IPI00547503 RefSeq:NP_188798.2 UniGene:At.38028 PRIDE:Q8L7M6
            EnsemblPlants:AT3G21610.1 GeneID:821715 KEGG:ath:AT3G21610
            TAIR:At3g21610 eggNOG:COG1963 HOGENOM:HOG000067103
            InParanoid:Q8L7M6 OMA:ACALAQF ProtClustDB:CLSN2680043
            ArrayExpress:Q8L7M6 Genevestigator:Q8L7M6 InterPro:IPR003832
            Pfam:PF02681 Uniprot:Q8L7M6
        Length = 174

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 66/93 (70%), Positives = 79/93 (84%)

Query:    26 NFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLIGSGGMPSSHSATVTALAMAVGFQEG 85
             N P+ SAF+AF +AQ  K FT WYKE+RWD K++I SGGMPSSHSATVTALA+A+GF+EG
Sbjct:    33 NLPIFSAFLAFALAQFLKVFTNWYKEKRWDSKRMISSGGMPSSHSATVTALAVAIGFEEG 92

Query:    86 FGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
              G P FA A++LACVVMYDA+GVRL AGRQAE+
Sbjct:    93 AGAPAFAIAVVLACVVMYDASGVRLHAGRQAEL 125


>UNIPROTKB|Q81YD7 [details] [associations]
            symbol:BAS3352 "Uncharacterized protein" species:1392
            "Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:AE016879 EMBL:AE017334
            EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
            GenomeReviews:AE017334_GR HOGENOM:HOG000067103 InterPro:IPR003832
            Pfam:PF02681 KO:K09775 OMA:LGHTPVQ RefSeq:NP_845883.1
            RefSeq:YP_020248.2 RefSeq:YP_029609.1 DNASU:1083995
            EnsemblBacteria:EBBACT00000008879 EnsemblBacteria:EBBACT00000016652
            EnsemblBacteria:EBBACT00000020670 GeneID:1083995 GeneID:2815545
            GeneID:2848094 KEGG:ban:BA_3613 KEGG:bar:GBAA_3613 KEGG:bat:BAS3352
            ProtClustDB:CLSK917104 BioCyc:BANT260799:GJAJ-3414-MONOMER
            BioCyc:BANT261594:GJ7F-3523-MONOMER Uniprot:Q81YD7
        Length = 141

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/96 (46%), Positives = 61/96 (63%)

Query:    23 IITNFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLIGSGGMPSSHSATVTALAMAVGF 82
             I+ N PL++A +++ +AQ  K      K   +D  +   SGGMPSSH++TVTALA  VG 
Sbjct:     4 ILHNDPLMAAVISWFLAQFTKVIFKLVKTGEFDFAKFFASGGMPSSHASTVTALATGVGV 63

Query:    83 QEGFGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
              EG    LFA A I A +VMYDA+GVRL   +QA++
Sbjct:    64 VEGVESTLFAIAAIFAIIVMYDASGVRLAVSKQAKI 99


>TIGR_CMR|BA_3613 [details] [associations]
            symbol:BA_3613 "conserved hypothetical protein"
            species:198094 "Bacillus anthracis str. Ames" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
            HOGENOM:HOG000067103 InterPro:IPR003832 Pfam:PF02681 KO:K09775
            OMA:LGHTPVQ RefSeq:NP_845883.1 RefSeq:YP_020248.2
            RefSeq:YP_029609.1 DNASU:1083995 EnsemblBacteria:EBBACT00000008879
            EnsemblBacteria:EBBACT00000016652 EnsemblBacteria:EBBACT00000020670
            GeneID:1083995 GeneID:2815545 GeneID:2848094 KEGG:ban:BA_3613
            KEGG:bar:GBAA_3613 KEGG:bat:BAS3352 ProtClustDB:CLSK917104
            BioCyc:BANT260799:GJAJ-3414-MONOMER
            BioCyc:BANT261594:GJ7F-3523-MONOMER Uniprot:Q81YD7
        Length = 141

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/96 (46%), Positives = 61/96 (63%)

Query:    23 IITNFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLIGSGGMPSSHSATVTALAMAVGF 82
             I+ N PL++A +++ +AQ  K      K   +D  +   SGGMPSSH++TVTALA  VG 
Sbjct:     4 ILHNDPLMAAVISWFLAQFTKVIFKLVKTGEFDFAKFFASGGMPSSHASTVTALATGVGV 63

Query:    83 QEGFGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
              EG    LFA A I A +VMYDA+GVRL   +QA++
Sbjct:    64 VEGVESTLFAIAAIFAIIVMYDASGVRLAVSKQAKI 99


>UNIPROTKB|Q71X40 [details] [associations]
            symbol:LMOf2365_2359 "Putative uncharacterized protein"
            species:265669 "Listeria monocytogenes serotype 4b str. F2365"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:AE017262 GenomeReviews:AE017262_GR eggNOG:COG1963
            HOGENOM:HOG000067103 InterPro:IPR003832 Pfam:PF02681 KO:K09775
            RefSeq:YP_014948.1 STRING:Q71X40 GeneID:2797602
            KEGG:lmf:LMOf2365_2359 PATRIC:20326082 OMA:LGHTPVQ
            ProtClustDB:CLSK873600 Uniprot:Q71X40
        Length = 157

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 44/96 (45%), Positives = 58/96 (60%)

Query:    23 IITNFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLIGSGGMPSSHSATVTALAMAVGF 82
             I TN PLI++ +A   AQ  K        R+++L  +  +GGMPSSHSA VTAL   +  
Sbjct:     3 IFTNTPLIASIIAIVFAQVVKVPIHILVYRKFNLGLMFSTGGMPSSHSAAVTALMTTLAI 62

Query:    83 QEGFGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
             + G   P FA A++   +VM+DATGVR QAG QA V
Sbjct:    63 EYGLDSPYFAIAVVFGIIVMFDATGVRRQAGEQAVV 98


>TAIR|locus:2076790 [details] [associations]
            symbol:AT3G61770 "AT3G61770" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004601
            eggNOG:COG1963 InterPro:IPR003832 Pfam:PF02681 EMBL:AY080661
            EMBL:AY086903 EMBL:AY123039 IPI:IPI00521670 RefSeq:NP_567117.1
            UniGene:At.34231 EnsemblPlants:AT3G61770.1 GeneID:825350
            KEGG:ath:AT3G61770 TAIR:At3g61770 HOGENOM:HOG000241555
            InParanoid:Q8RXV2 OMA:HPISQRK PhylomeDB:Q8RXV2
            ProtClustDB:CLSN2689308 ArrayExpress:Q8RXV2 Genevestigator:Q8RXV2
            Uniprot:Q8RXV2
        Length = 284

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 44/93 (47%), Positives = 54/93 (58%)

Query:    26 NFPLISAFVAFTIAQCAKFFTAWYKERRWDLKQLIGSGGMPSSHSATVTALAMAVGFQEG 85
             N   +SA VA+  AQ +K    ++ ER+WD + L  SGGMPSSHSA   AL  +V    G
Sbjct:   140 NPTFVSAVVAWFFAQSSKMVINFFIERKWDFRLLYASGGMPSSHSALCMALTTSVALCHG 199

Query:    86 FGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
                 LF   L  + +VMYDA GVR  AG QAEV
Sbjct:   200 VADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEV 232


>TAIR|locus:505006336 [details] [associations]
            symbol:AT3G12685 "AT3G12685" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004601
            eggNOG:COG1963 HOGENOM:HOG000067103 InterPro:IPR003832 Pfam:PF02681
            EMBL:AY056158 EMBL:AY096441 IPI:IPI00524536 RefSeq:NP_566432.1
            UniGene:At.26370 STRING:Q93ZZ7 PRIDE:Q93ZZ7
            EnsemblPlants:AT3G12685.1 GeneID:820449 KEGG:ath:AT3G12685
            TAIR:At3g12685 InParanoid:Q93ZZ7 OMA:SKPFTSV PhylomeDB:Q93ZZ7
            ProtClustDB:CLSN2688315 ArrayExpress:Q93ZZ7 Genevestigator:Q93ZZ7
            Uniprot:Q93ZZ7
        Length = 213

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)

Query:    23 IITNFPLISAFVAFTIAQCAKFFTAWYKE-RRWDLKQLIGSGGMPSSHSATVTALAMAVG 81
             +I N  LI+A  +  I Q +K FT+     +  D + +  +GG PS+HS++V A A A+ 
Sbjct:    50 VIHNKVLIAAGTSAVIGQLSKPFTSVVLYGKNLDFRSVFQAGGFPSTHSSSVVAAATAIA 109

Query:    82 FQEGFGGPLFATALILACVVMYDATGVRLQAGRQAEV 118
             F+ GF   +F   ++ A ++MYDA GVR + G+ A+V
Sbjct:   110 FERGFADSIFGLTVVYAGLIMYDAQGVRREVGKHAKV 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       100   0.00091  102 3  11 22  0.44    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  116 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.58u 0.13s 10.71t   Elapsed:  00:00:00
  Total cpu time:  10.58u 0.13s 10.71t   Elapsed:  00:00:00
  Start:  Mon May 20 23:04:29 2013   End:  Mon May 20 23:04:29 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data