Query 033495
Match_columns 118
No_of_seqs 144 out of 209
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dw3_A Intrinsic membrane prot 35.3 39 0.0013 22.9 3.4 8 26-33 57-64 (77)
2 1xu2_R Tumor necrosis factor r 33.7 17 0.00057 22.7 1.3 21 63-83 19-39 (47)
3 2h9e_C Anti-coagulant protein 32.6 3.4 0.00012 27.3 -2.1 48 58-109 13-77 (84)
4 3lay_A Zinc resistance-associa 29.9 11 0.00038 28.3 0.0 25 1-25 27-51 (175)
5 2a3m_A COG3005: nitrate/TMAO r 29.3 11 0.00038 26.2 -0.1 8 1-8 1-8 (130)
6 1nsc_A Neuraminidase; hydrolas 25.5 12 0.00042 31.9 -0.5 14 92-105 191-204 (390)
7 2htq_A Neuraminidase; zanamivi 25.1 28 0.00094 29.8 1.6 17 92-108 187-203 (390)
8 3bx4_B Aggretin beta chain; to 23.4 17 0.00058 23.8 0.0 10 1-10 1-10 (146)
9 1dec_A Decorsin; blood coagula 23.1 18 0.00063 21.5 0.1 6 98-103 18-23 (39)
10 3tje_F Tumor necrosis factor r 20.8 33 0.0011 24.9 1.1 23 82-107 41-72 (156)
No 1
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=35.27 E-value=39 Score=22.91 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.1
Q ss_pred ccccCCCC
Q 033495 26 SIVEAPTP 33 (118)
Q Consensus 26 ~~~~~~~~ 33 (118)
...++|+|
T Consensus 57 ~Sr~aP~P 64 (77)
T 2dw3_A 57 QENQAPAP 64 (77)
T ss_dssp TCSSCSSC
T ss_pred hcccCCCC
Confidence 33433333
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=33.67 E-value=17 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=17.5
Q ss_pred HhhHHhhhCCCcchHHHHHHH
Q 033495 63 RCTTRCSKTQYRKPCLFFCQK 83 (118)
Q Consensus 63 ~C~~RCs~~~~~~~C~~~C~~ 83 (118)
-|..||+.++.+..|-.||..
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHHC
T ss_pred chhcccCCCCCcchHHHHHhh
Confidence 388999977788899999963
No 3
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=32.60 E-value=3.4 Score=27.25 Aligned_cols=48 Identities=33% Similarity=0.864 Sum_probs=20.4
Q ss_pred CCChH-HhhHHhhhC-------CC-cchH-HHHHHHhcccccccCCCCCCCC-------CCCCcccccc
Q 033495 58 QECGP-RCTTRCSKT-------QY-RKPC-LFFCQKCCAKCLCVPAGFYGNK-------QSCPCYNNWK 109 (118)
Q Consensus 58 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~GtyGnk-------~~CPCY~~~~ 109 (118)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-.
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~ 77 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDF 77 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEE
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCe
Confidence 47999 999999863 12 3678 66665 577885 4888774 5688876543
No 4
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.89 E-value=11 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhh
Q 033495 1 MASKLSVVAFSLVLIFLFLVENHAT 25 (118)
Q Consensus 1 Mak~~~~~ll~l~~~~l~~~~v~a~ 25 (118)
|+|++.+.+++|.++.|+.+.+.|.
T Consensus 27 ~~kk~~la~~al~~l~l~s~~A~A~ 51 (175)
T 3lay_A 27 RNNKSAIALIALSLLALSSGAAFAG 51 (175)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 4577777777776555554444443
No 5
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C subunit; tetraheme cytochrome, electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=29.27 E-value=11 Score=26.20 Aligned_cols=8 Identities=38% Similarity=0.360 Sum_probs=0.0
Q ss_pred CchhHHHH
Q 033495 1 MASKLSVV 8 (118)
Q Consensus 1 Mak~~~~~ 8 (118)
|.|.+.++
T Consensus 1 Mkk~~~~~ 8 (130)
T 2a3m_A 1 MRKSLFAV 8 (130)
T ss_dssp --------
T ss_pred CchhHHHH
Confidence 66544443
No 6
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=25.48 E-value=12 Score=31.90 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCcc
Q 033495 92 PAGFYGNKQSCPCY 105 (118)
Q Consensus 92 P~GtyGnk~~CPCY 105 (118)
.+|+.+|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 35778888999998
No 7
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=25.11 E-value=28 Score=29.77 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCccccc
Q 033495 92 PAGFYGNKQSCPCYNNW 108 (118)
Q Consensus 92 P~GtyGnk~~CPCY~~~ 108 (118)
.+|+.++.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888899999999654
No 8
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=23.43 E-value=17 Score=23.85 Aligned_cols=10 Identities=20% Similarity=-0.124 Sum_probs=0.0
Q ss_pred CchhHHHHHH
Q 033495 1 MASKLSVVAF 10 (118)
Q Consensus 1 Mak~~~~~ll 10 (118)
|.+++.+.++
T Consensus 1 M~~~~~~~~~ 10 (146)
T 3bx4_B 1 MGRFIFVSFG 10 (146)
T ss_dssp ----------
T ss_pred CceeHHHHHH
Confidence 5555444333
No 9
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=23.09 E-value=18 Score=21.51 Aligned_cols=6 Identities=67% Similarity=1.509 Sum_probs=3.6
Q ss_pred CCCCCC
Q 033495 98 NKQSCP 103 (118)
Q Consensus 98 nk~~CP 103 (118)
||+|||
T Consensus 18 nkdecp 23 (39)
T 1dec_A 18 NKDECP 23 (39)
T ss_dssp SSSEEC
T ss_pred cCCCCC
Confidence 566665
No 10
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=20.82 E-value=33 Score=24.88 Aligned_cols=23 Identities=35% Similarity=0.857 Sum_probs=14.3
Q ss_pred HHhcccccccCCCCCCC--------CCCC-Ccccc
Q 033495 82 QKCCAKCLCVPAGFYGN--------KQSC-PCYNN 107 (118)
Q Consensus 82 ~~CC~~C~CVP~GtyGn--------k~~C-PCY~~ 107 (118)
+.||.+| |||||=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4567666 6787732 3567 67655
Done!