Query 033495
Match_columns 118
No_of_seqs 144 out of 209
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 04:04:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033495.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033495hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 61.5 0.44 3.2E-05 29.5 -1.3 52 59-111 9-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 53.7 1.9 0.00014 24.8 0.8 19 85-103 21-40 (43)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 48.3 3.5 0.00025 23.1 1.3 19 64-82 17-35 (36)
4 d1exta1 g.24.1.1 (A:13-71) Tum 45.5 2 0.00015 25.3 -0.0 32 83-117 16-58 (59)
5 d2aepa1 b.68.1.1 (A:83-469) In 28.2 6.1 0.00044 31.7 0.1 18 91-108 185-202 (387)
6 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 28.2 1.1 8.3E-05 26.5 -3.3 36 58-97 11-46 (60)
7 d1f8ea_ b.68.1.1 (A:) Influenz 25.5 7.3 0.00053 31.2 0.1 17 92-108 188-204 (388)
8 d1deca_ g.3.15.2 (A:) Decorsin 23.1 8.6 0.00063 21.5 0.1 6 98-103 18-23 (39)
9 d2c7na1 g.39.1.15 (A:18-73) Ra 18.0 9.8 0.00071 22.9 -0.5 16 94-109 7-26 (56)
10 d2heyr3 g.24.1.1 (R:29-82) Tum 17.5 8.4 0.00061 22.3 -0.9 26 82-110 12-45 (54)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=61.46 E-value=0.44 Score=29.54 Aligned_cols=52 Identities=27% Similarity=0.541 Sum_probs=23.1
Q ss_pred CChH-HhhHHhhhCCCcchHHHHHHH------hcccccccCCCCCCCC-------CCCCcccccccC
Q 033495 59 ECGP-RCTTRCSKTQYRKPCLFFCQK------CCAKCLCVPAGFYGNK-------QSCPCYNNWKTK 111 (118)
Q Consensus 59 ~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~GtyGnk-------~~CPCY~~~~t~ 111 (118)
+|.+ .|...|+.-.....|...++. |=.-|.| |+|++-|. ++||||.+-+..
T Consensus 9 ~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 9 SCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp -------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred ccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 5765 477777765555555555443 3356778 89998765 468998765543
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.74 E-value=1.9 Score=24.81 Aligned_cols=19 Identities=42% Similarity=1.427 Sum_probs=14.6
Q ss_pred cccccccCCCCCCCC-CCCC
Q 033495 85 CAKCLCVPAGFYGNK-QSCP 103 (118)
Q Consensus 85 C~~C~CVP~GtyGnk-~~CP 103 (118)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888855 5565
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.29 E-value=3.5 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.828 Sum_probs=17.3
Q ss_pred hhHHhhhCCCcchHHHHHH
Q 033495 64 CTTRCSKTQYRKPCLFFCQ 82 (118)
Q Consensus 64 C~~RCs~~~~~~~C~~~C~ 82 (118)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 8899999889999999996
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.45 E-value=2 Score=25.31 Aligned_cols=32 Identities=34% Similarity=0.824 Sum_probs=19.6
Q ss_pred HhcccccccCCCCC------C--CCCCC-Cccccccc--CCCCCCC
Q 033495 83 KCCAKCLCVPAGFY------G--NKQSC-PCYNNWKT--KRGGPKC 117 (118)
Q Consensus 83 ~CC~~C~CVP~Gty------G--nk~~C-PCY~~~~t--~~g~pKC 117 (118)
.||.+| |||+| + ..-+| ||-..-.+ .++.++|
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt~~~N~~~~C 58 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHC 58 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEECCSSBCCSSC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCccCcCCCCCCc
Confidence 466665 89988 4 24688 88766443 2234554
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=28.18 E-value=6.1 Score=31.70 Aligned_cols=18 Identities=22% Similarity=0.624 Sum_probs=14.7
Q ss_pred cCCCCCCCCCCCCccccc
Q 033495 91 VPAGFYGNKQSCPCYNNW 108 (118)
Q Consensus 91 VP~GtyGnk~~CPCY~~~ 108 (118)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367888999999999765
No 6
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=28.17 E-value=1.1 Score=26.53 Aligned_cols=36 Identities=25% Similarity=0.574 Sum_probs=26.0
Q ss_pred CCChHHhhHHhhhCCCcchHHHHHHHhcccccccCCCCCC
Q 033495 58 QECGPRCTTRCSKTQYRKPCLFFCQKCCAKCLCVPAGFYG 97 (118)
Q Consensus 58 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GtyG 97 (118)
..|+++|..-|+.-.....|.+.|- .-|.| |+|++=
T Consensus 11 ~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~vl 46 (60)
T d1hx2a_ 11 QTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTVL 46 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCEE
T ss_pred CcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEeE
Confidence 3688889988987666666766443 55777 888763
No 7
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=25.52 E-value=7.3 Score=31.25 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCccccc
Q 033495 92 PAGFYGNKQSCPCYNNW 108 (118)
Q Consensus 92 P~GtyGnk~~CPCY~~~ 108 (118)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 56888899999999763
No 8
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=23.09 E-value=8.6 Score=21.51 Aligned_cols=6 Identities=67% Similarity=1.509 Sum_probs=3.6
Q ss_pred CCCCCC
Q 033495 98 NKQSCP 103 (118)
Q Consensus 98 nk~~CP 103 (118)
||+|||
T Consensus 18 nkdecp 23 (39)
T d1deca_ 18 NKDECP 23 (39)
T ss_dssp SSSEEC
T ss_pred cCCCCC
Confidence 566665
No 9
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.99 E-value=9.8 Score=22.94 Aligned_cols=16 Identities=38% Similarity=1.018 Sum_probs=12.1
Q ss_pred CCCCC---CCCC-Ccccccc
Q 033495 94 GFYGN---KQSC-PCYNNWK 109 (118)
Q Consensus 94 GtyGn---k~~C-PCY~~~~ 109 (118)
|.||| ...| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 67775 5789 6999874
No 10
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.49 E-value=8.4 Score=22.25 Aligned_cols=26 Identities=27% Similarity=0.851 Sum_probs=15.8
Q ss_pred HHhcccccccCCCCC-------CCCCCC-Cccccccc
Q 033495 82 QKCCAKCLCVPAGFY-------GNKQSC-PCYNNWKT 110 (118)
Q Consensus 82 ~~CC~~C~CVP~Gty-------Gnk~~C-PCY~~~~t 110 (118)
|.||.+| |||+| ...-+| ||-....|
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gtyt 45 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFYN 45 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCcc
Confidence 5677776 78877 334567 66555433
Done!