BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033496
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZB1|LOL1_ARATH Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1
Length = 154
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/84 (94%), Positives = 81/84 (96%), Gaps = 3/84 (3%)
Query: 16 TPPANGA---QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT 72
TPPANG+ QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT
Sbjct: 22 TPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHT 81
Query: 73 LLMYIRGATSVQCSCCHTVNLALE 96
LLMYIRGATSVQCSCCHTVNLALE
Sbjct: 82 LLMYIRGATSVQCSCCHTVNLALE 105
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55
+ + C C LL+Y GA SV CAVCN VT+V
Sbjct: 110 AHVNCGNCMMLLMYQYGARSVKCAVCNFVTSV 141
>sp|Q0J7V9|LSD1_ORYSJ Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1
Length = 184
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/96 (88%), Positives = 88/96 (91%), Gaps = 1/96 (1%)
Query: 1 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 60
MPVPLAPYPTPP P P NGAQSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGT
Sbjct: 42 MPVPLAPYPTPPVP-FTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGT 100
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALE 96
EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+E
Sbjct: 101 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAME 136
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAV-PPPGTE 61
C CR LL+Y GA SV CAVCN VT+V PGT+
Sbjct: 145 CGNCRMLLMYQYGARSVKCAVCNFVTSVGASPGTD 179
>sp|Q2QMB3|LOL2_ORYSJ Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1
Length = 172
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV-PPPGTEMAQLVCGGCHTLLMYIRGAT 81
QSQ+VC GCRN+LLYP GA SVCCAVC+AV++ P PG ++A L+CGGC TLLMY R AT
Sbjct: 2 QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61
Query: 82 SVQCSCCHTVNL 93
SV+CSCC TVNL
Sbjct: 62 SVRCSCCDTVNL 73
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83
+ L+C GCR LL+Y ATSV C+ C+ V V P + +A L CG C T+LMY GA SV
Sbjct: 43 AHLICGGCRTLLMYTRNATSVRCSCCDTVNLVRPV-SSIAHLNCGQCQTVLMYPYGAPSV 101
Query: 84 QCSCCHTVNLALEGCTRQL 102
+C+ C+ + R L
Sbjct: 102 KCAICNFITNTGMNTMRHL 120
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTA--------VPPPGTE 61
+ L C C+ +L+YP GA SV CA+CN +T +PP GT
Sbjct: 81 AHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMRHLPPNGTS 126
>sp|Q6ASS2|LOL3_ORYSJ Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1
Length = 186
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 80
QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP EMA L+CGGC TLLMY R A
Sbjct: 2 QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61
Query: 81 TSVQCSCCHTVNL 93
+V+CSCC TVNL
Sbjct: 62 DTVRCSCCSTVNL 74
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVT 53
+ + C CR L+YP GA SV CA+C+ +T
Sbjct: 82 AHVSCGQCRTTLMYPYGAPSVKCAICHYIT 111
>sp|P94077|LSD1_ARATH Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1
Length = 189
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 80
Q QLVC GCRNLL+YP GA++V CA+CN + VPPP +MA ++CGGC T+LMY RGA
Sbjct: 7 QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66
Query: 81 TSVQCSCCHTVNL 93
+SV+CSCC T NL
Sbjct: 67 SSVRCSCCQTTNL 79
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP--------PPGTEMAQLVCGGCHTLLM 75
+ ++C GCR +L+Y GA+SV C+ C VP P +++AQ+ CG C T LM
Sbjct: 49 AHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLM 108
Query: 76 YIRGATSVQCSCCHTV 91
Y GA+SV+C+ C V
Sbjct: 109 YPYGASSVKCAVCQFV 124
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 5 LAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55
L P + + P + AQ + C CR L+YP GA+SV CAVC VT V
Sbjct: 79 LVPAHSNQVAHAPSSQVAQ--INCGHCRTTLMYPYGASSVKCAVCQFVTNV 127
>sp|Q84UR0|LOL4_ORYSJ Protein LOL4 OS=Oryza sativa subsp. japonica GN=LOL4 PE=2 SV=1
Length = 147
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT-EMAQLVCGGCHTLLMYIRGAT 81
Q QL+CSGCR ++ Y G VCC CN +TAV P +M++L+C GC TLL Y RGA+
Sbjct: 2 QDQLICSGCRRVVQYRRGVAGVCCPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGAS 61
Query: 82 SVQCSCCHTVN 92
+++C C+ +N
Sbjct: 62 NIRCPSCNRLN 72
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 16 TPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLM 75
P A S+L+CSGC LL Y GA+++ C CN + + ++A L CG C T LM
Sbjct: 35 NPSAVADMSELICSGCPTLLFYNRGASNIRCPSCNRLNSTRS-ANQIAHLTCGQCRTTLM 93
Query: 76 YIRGATSVQCSCCHTVN 92
+ GA++VQC+ C VN
Sbjct: 94 HPPGASTVQCATCRYVN 110
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55
+ L C CR L++P GA++V CA C V V
Sbjct: 81 AHLTCGQCRTTLMHPPGASTVQCATCRYVNHV 112
>sp|Q69UP7|LOL1_ORYSJ Protein LOL1 OS=Oryza sativa subsp. japonica GN=LOL1 PE=2 SV=1
Length = 147
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 5 LAPYPTPPAPYTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQ 64
+A P P + + GAQSQLVCSGCRNLL+YP GATS+CCAVC VTAVP P + +
Sbjct: 27 MASTPWSSMPPSSHSLGAQSQLVCSGCRNLLMYPAGATSICCAVCGTVTAVPAPEQKSSC 86
Query: 65 LVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGCTRQLWELQDAADVPIWSTIC 118
V L G + Q C V+ A CT+ E+ + I++ +C
Sbjct: 87 NVHENKERLKGNTNGFRAPQ-RCARRVDGA---CTQVAREVHTEVALVIFTLLC 136
>sp|O65426|LOL2_ARATH Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=2 SV=1
Length = 155
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82
++Q+VC CR LL Y G+ V C+ C V V ++ Q+ C C LLMY GA +
Sbjct: 58 KAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLE-ANQVGQVNCNNCKLLLMYPYGAPA 116
Query: 83 VQCSCCHTVNLALEGCTRQLWELQDA 108
V+CS C++V E R W Q
Sbjct: 117 VRCSSCNSVTDISENNKRPPWSEQQG 142
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEG 97
E AQ+VCG C LL Y+RG+ V+CS C TVNL LE
Sbjct: 57 EKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEA 93
>sp|Q704V3|LOL5_ORYSJ Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1
Length = 163
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 20 NGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRG 79
N Q+VC CR LL Y GA V C C + V E+ ++ CG C TLLMY G
Sbjct: 65 NKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYV-LEAHEVGKVHCGHCATLLMYPFG 123
Query: 80 ATSVQCSCCHTVNLALEGCTRQLWELQD 107
A +V+CS C V E R+ ++
Sbjct: 124 APAVKCSLCLFVTEIGERNVRRRLSIEQ 151
>sp|Q7XJE6|MCA1_ARATH Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
Length = 367
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 8 YPTPPAP-YTPPANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT 60
YP PP+ Y PP + CSGCR L P GA S+ CA+C AVT + P T
Sbjct: 2 YPPPPSSIYAPPM-----LVNCSGCRTPLQLPSGARSIRCALCQAVTHIADPRT 50
>sp|Q7XJE5|MCA2_ARATH Metacaspase-2 OS=Arabidopsis thaliana GN=AMC2 PE=1 SV=1
Length = 418
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 28 CSGCRNLLLYPVGATSVCCAVCNAVTAVPP 57
CS CR L P GAT + CA+C+A T + P
Sbjct: 7 CSSCRTPLHLPPGATRIRCAICHAFTLIAP 36
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.475
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,513,303
Number of Sequences: 539616
Number of extensions: 1675670
Number of successful extensions: 10450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 10303
Number of HSP's gapped (non-prelim): 141
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)