Query 033496
Match_columns 118
No_of_seqs 89 out of 112
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qxf_A GR2, 30S ribosomal prot 91.8 0.081 2.8E-06 35.2 2.0 39 43-83 7-45 (66)
2 2xzm_6 RPS27E; ribosome, trans 91.4 0.097 3.3E-06 36.0 2.1 38 43-82 32-69 (81)
3 3j20_W 30S ribosomal protein S 91.2 0.098 3.4E-06 34.5 2.0 37 43-81 15-51 (63)
4 3u5c_b RP61, YS20, 40S ribosom 86.1 0.28 9.6E-06 33.8 1.5 39 43-83 34-72 (82)
5 3iz6_X 40S ribosomal protein S 85.1 0.17 6E-06 35.1 0.0 37 44-82 37-73 (86)
6 2xzm_6 RPS27E; ribosome, trans 81.4 2.4 8.1E-05 29.1 4.5 46 55-101 23-69 (81)
7 1pft_A TFIIB, PFTFIIBN; N-term 73.8 2.7 9.2E-05 24.8 2.8 29 64-92 5-34 (50)
8 3j20_W 30S ribosomal protein S 73.8 6.3 0.00022 25.8 4.7 48 54-102 5-53 (63)
9 3u5c_b RP61, YS20, 40S ribosom 72.0 6 0.00021 27.1 4.5 44 56-100 26-70 (82)
10 2yrc_A Protein transport prote 71.6 2.8 9.6E-05 26.5 2.6 38 20-57 4-47 (59)
11 2k2d_A Ring finger and CHY zin 69.8 6 0.00021 26.2 4.0 46 59-104 32-77 (79)
12 1pft_A TFIIB, PFTFIIBN; N-term 68.9 3.9 0.00013 24.1 2.7 31 23-53 3-34 (50)
13 1wii_A Hypothetical UPF0222 pr 67.3 4.4 0.00015 27.5 3.0 41 42-82 22-65 (85)
14 1gh9_A 8.3 kDa protein (gene M 65.6 6.9 0.00024 25.7 3.6 30 63-94 3-32 (71)
15 3iz6_X 40S ribosomal protein S 64.2 7.4 0.00025 26.9 3.7 38 62-100 34-72 (86)
16 1qxf_A GR2, 30S ribosomal prot 61.8 8.4 0.00029 25.4 3.4 41 62-103 5-46 (66)
17 2yrc_A Protein transport prote 59.7 6 0.00021 24.9 2.4 37 62-98 7-49 (59)
18 2ppt_A Thioredoxin-2; thiredox 57.9 1.7 5.9E-05 29.8 -0.5 31 43-74 14-44 (155)
19 1pcx_A Protein transport prote 53.7 9.3 0.00032 34.2 3.4 33 25-57 112-148 (810)
20 3efo_B SEC24 related gene fami 53.3 7.9 0.00027 34.5 2.9 35 23-57 96-134 (770)
21 3na7_A HP0958; flagellar bioge 52.9 4.1 0.00014 31.2 0.9 13 65-77 223-235 (256)
22 3eh2_A Protein transport prote 52.7 8.3 0.00028 34.4 2.9 35 23-57 92-130 (766)
23 3p2a_A Thioredoxin 2, putative 50.3 4.1 0.00014 26.9 0.4 31 43-74 5-35 (148)
24 1gh9_A 8.3 kDa protein (gene M 48.4 15 0.00052 24.0 3.0 31 23-55 2-32 (71)
25 1m2v_B SEC24, protein transpor 47.1 14 0.00047 34.0 3.5 31 26-56 229-263 (926)
26 2ct7_A Ring finger protein 31; 41.6 26 0.00089 22.6 3.3 22 28-49 28-49 (86)
27 1vq8_Z 50S ribosomal protein L 36.7 18 0.00063 24.1 2.0 31 61-91 24-54 (83)
28 1bor_A Transcription factor PM 34.9 21 0.00073 20.7 1.9 43 45-95 8-50 (56)
29 3p8b_A DNA-directed RNA polyme 34.3 17 0.00057 24.7 1.5 30 19-54 17-46 (81)
30 1twf_I B12.6, DNA-directed RNA 33.5 21 0.00073 24.8 2.0 30 65-94 5-38 (122)
31 1faq_A RAF-1; transferase, ser 32.2 36 0.0012 19.5 2.6 22 65-91 15-36 (52)
32 3m7n_A Putative uncharacterize 31.5 25 0.00085 25.6 2.2 27 63-91 139-165 (179)
33 1twf_L ABC10-alpha, DNA-direct 30.1 26 0.00088 22.7 1.8 35 64-100 28-63 (70)
34 1pcx_A Protein transport prote 29.8 29 0.001 31.1 2.7 32 65-96 113-148 (810)
35 2dkt_A Ring finger and CHY zin 29.4 65 0.0022 23.7 4.1 43 42-89 26-78 (143)
36 1rfh_A RAS association (ralgds 27.9 44 0.0015 20.2 2.6 23 65-91 23-45 (59)
37 1m2v_B SEC24, protein transpor 27.5 34 0.0012 31.4 2.7 32 65-96 229-264 (926)
38 3efo_B SEC24 related gene fami 25.4 30 0.001 30.8 2.0 33 65-97 99-135 (770)
39 2js4_A UPF0434 protein BB2007; 25.1 53 0.0018 21.1 2.6 16 24-39 7-22 (70)
40 2hf1_A Tetraacyldisaccharide-1 24.7 40 0.0014 21.6 2.0 27 65-91 9-35 (68)
41 2js4_A UPF0434 protein BB2007; 24.3 46 0.0016 21.4 2.3 31 64-94 8-38 (70)
42 3eh2_A Protein transport prote 24.3 34 0.0012 30.5 2.1 33 65-97 95-131 (766)
43 2jr6_A UPF0434 protein NMA0874 24.2 42 0.0014 21.5 2.0 25 66-90 10-34 (68)
44 1ptq_A Protein kinase C delta 23.9 45 0.0016 18.8 2.0 24 27-51 13-36 (50)
45 2pk7_A Uncharacterized protein 23.4 36 0.0012 21.9 1.6 13 63-77 25-37 (69)
46 3eh1_A Protein transport prote 22.5 38 0.0013 30.2 2.0 31 26-57 86-120 (751)
47 3j20_Y 30S ribosomal protein S 21.7 70 0.0024 19.2 2.6 26 66-91 21-46 (50)
48 2e2z_A TIM15; protein import, 21.6 27 0.00093 24.5 0.8 32 21-52 9-47 (100)
49 2jrp_A Putative cytoplasmic pr 21.1 1.6E+02 0.0056 19.6 4.6 68 26-107 3-72 (81)
50 2csz_A Synaptotagmin-like prot 21.0 13 0.00043 25.0 -1.0 51 22-90 22-72 (76)
51 3eh1_A Protein transport prote 20.9 48 0.0016 29.5 2.3 32 65-97 86-121 (751)
52 2fnf_X Putative RAS effector N 20.8 53 0.0018 20.8 2.0 23 65-91 36-58 (72)
53 1zbd_B Rabphilin-3A; G protein 20.5 32 0.0011 24.6 0.9 54 24-91 54-107 (134)
54 3h0g_I DNA-directed RNA polyme 20.4 66 0.0023 21.9 2.5 30 66-95 6-39 (113)
No 1
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=91.83 E-value=0.081 Score=35.23 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.3
Q ss_pred eEecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCeE
Q 033496 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (118)
Q Consensus 43 sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~sV 83 (118)
.|+|+.|..++.+= ......+.|.+|.++|..|.|-..-
T Consensus 7 ~VKCp~C~niq~VF--ShA~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIF--DHPSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEE--SSCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEE--ecCceEEEcccCCCEEeecCCccee
Confidence 58888888888763 2334678888888888888886543
No 2
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=91.38 E-value=0.097 Score=36.04 Aligned_cols=38 Identities=21% Similarity=0.551 Sum_probs=23.0
Q ss_pred eEecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCe
Q 033496 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (118)
Q Consensus 43 sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~s 82 (118)
.|+|+.|..++.+= .+....+.|.+|.++|..|.|-..
T Consensus 32 ~VkCp~C~n~q~VF--ShA~t~V~C~~Cg~~L~~PTGGKA 69 (81)
T 2xzm_6 32 DVKCAQCQNIQMIF--SNAQSTIICEKCSAILCKPTGGKV 69 (81)
T ss_dssp EEECSSSCCEEEEE--TTCSSCEECSSSCCEEEEECSSCE
T ss_pred EeECCCCCCeeEEE--ecCccEEEccCCCCEEeecCCCCe
Confidence 35666666666553 233455667777777777766544
No 3
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.23 E-value=0.098 Score=34.48 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=21.8
Q ss_pred eEecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCC
Q 033496 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81 (118)
Q Consensus 43 sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~ 81 (118)
.|+|+.|..++.+= .+....+.|.+|.++|..|.|-.
T Consensus 15 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cgt~L~~PTGGK 51 (63)
T 3j20_W 15 RVKCIDCGNEQIVF--SHPATKVRCLICGATLVEPTGGK 51 (63)
T ss_dssp EEECSSSCCEEEEE--SSCSSCEECSSSCCEEEECCSSS
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccCcCCEEecCCCCc
Confidence 46666666666552 23345566666666666666644
No 4
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=86.15 E-value=0.28 Score=33.81 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=23.2
Q ss_pred eEecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCeE
Q 033496 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (118)
Q Consensus 43 sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~sV 83 (118)
.|+|+.|..++.+= .+....+.|.+|.++|..|.|-..-
T Consensus 34 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cg~~L~~PTGGKa~ 72 (82)
T 3u5c_b 34 DVKCPGCLNITTVF--SHAQTAVTCESCSTILCTPTGGKAK 72 (82)
T ss_dssp EEECTTSCSCEEEE--SBCSSCCCCSSSCCCCEECCSSBCE
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccccCCEEeccCCCCeE
Confidence 46666666666553 2233556677777777777665443
No 5
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=85.08 E-value=0.17 Score=35.11 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=21.8
Q ss_pred EecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCe
Q 033496 44 VCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (118)
Q Consensus 44 VrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~s 82 (118)
|+|+.|..++.+= .+....+.|.+|.++|..|.|-..
T Consensus 37 VkCp~C~~~~~VF--ShA~t~V~C~~CgtvL~~PTGGKa 73 (86)
T 3iz6_X 37 VKCQGCFNITTVF--SHSQTVVVCPGCQTVLCQPTGGKA 73 (86)
T ss_dssp EECTTTCCEEEEE--TTCSSCCCCSSSCCCCSCCCSSSC
T ss_pred EECCCCCCeeEEE--ecCCcEEEccCCCCEeecCCCCCE
Confidence 6666666666553 223355666666666666666543
No 6
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=81.41 E-value=2.4 Score=29.05 Aligned_cols=46 Identities=13% Similarity=0.505 Sum_probs=30.0
Q ss_pred CCCCCCceeEEEeCCcC-ceeeeecCCCeEeCCCCCcccccccccccc
Q 033496 55 VPPPGTEMAQLVCGGCH-TLLMYIRGATSVQCSCCHTVNLALEGCTRQ 101 (118)
Q Consensus 55 vp~~~~~~aql~CGgCr-tlLmYP~GA~sVrCs~C~tVt~v~e~~~r~ 101 (118)
++.+..-...+.|.+|. ...+|-+-++.|.|..|+++ ++.+.+-+.
T Consensus 23 v~~PnS~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~-L~~PTGGKA 69 (81)
T 2xzm_6 23 IQAPNSYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAI-LCKPTGGKV 69 (81)
T ss_dssp SCCCSCCEEEEECSSSCCEEEEETTCSSCEECSSSCCE-EEEECSSCE
T ss_pred eeCCCCcEEEeECCCCCCeeEEEecCccEEEccCCCCE-EeecCCCCe
Confidence 44445566677787774 45677777777788888777 555544443
No 7
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=73.84 E-value=2.7 Score=24.78 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=21.8
Q ss_pred EEEeCCcCc-eeeeecCCCeEeCCCCCccc
Q 033496 64 QLVCGGCHT-LLMYIRGATSVQCSCCHTVN 92 (118)
Q Consensus 64 ql~CGgCrt-lLmYP~GA~sVrCs~C~tVt 92 (118)
.+.|-.|+. .|.|-..+....|..|+.|-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 456777777 78887777788888888763
No 8
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.80 E-value=6.3 Score=25.76 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=37.0
Q ss_pred cCCCCCCceeEEEeCCcCc-eeeeecCCCeEeCCCCCcccccccccccch
Q 033496 54 AVPPPGTEMAQLVCGGCHT-LLMYIRGATSVQCSCCHTVNLALEGCTRQL 102 (118)
Q Consensus 54 ~vp~~~~~~aql~CGgCrt-lLmYP~GA~sVrCs~C~tVt~v~e~~~r~~ 102 (118)
+++.+..-...+.|.+|.. ...|-+-++.|+|..|+++ +..+.+-+..
T Consensus 5 Lv~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~-L~~PTGGKa~ 53 (63)
T 3j20_W 5 IIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGAT-LVEPTGGKGI 53 (63)
T ss_dssp GCCCCSCCEEEEECSSSCCEEEEESSCSSCEECSSSCCE-EEECCSSSCE
T ss_pred cccCCCCcEEEEECCCCCCeeEEEecCCeEEEccCcCCE-EecCCCCcEE
Confidence 4555667788899999964 5789999999999999998 6666554443
No 9
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=72.02 E-value=6 Score=27.09 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=27.3
Q ss_pred CCCCCceeEEEeCCcC-ceeeeecCCCeEeCCCCCccccccccccc
Q 033496 56 PPPGTEMAQLVCGGCH-TLLMYIRGATSVQCSCCHTVNLALEGCTR 100 (118)
Q Consensus 56 p~~~~~~aql~CGgCr-tlLmYP~GA~sVrCs~C~tVt~v~e~~~r 100 (118)
+.+..-...+.|.+|. ...+|-+-++.|.|..|+++ ++.+.+-+
T Consensus 26 ~~PnS~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~-L~~PTGGK 70 (82)
T 3u5c_b 26 QGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTI-LCTPTGGK 70 (82)
T ss_dssp CCCCCCEEEEECTTSCSCEEEESBCSSCCCCSSSCCC-CEECCSSB
T ss_pred cCCCCcEEEEECCCCCCeeEEEecCCeEEEccccCCE-EeccCCCC
Confidence 3344555667777775 45667777777777777777 44444433
No 10
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=71.59 E-value=2.8 Score=26.50 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=22.8
Q ss_pred CCCceeEecCC--CCeeE----eecCCCCeEecCCCCcCccCCC
Q 033496 20 NGAQSQLVCSG--CRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (118)
Q Consensus 20 ~~~~sQlvC~G--Cr~lL----~YprGA~sVrC~~C~tVn~vp~ 57 (118)
+.+..-+.|.. ||..| .+-.|....+|..|...|.+|+
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 34445566665 76665 3445556666777777666654
No 11
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=69.84 E-value=6 Score=26.18 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=34.6
Q ss_pred CCceeEEEeCCcCceeeeecCCCeEeCCCCCcccccccccccchhh
Q 033496 59 GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGCTRQLWE 104 (118)
Q Consensus 59 ~~~~aql~CGgCrtlLmYP~GA~sVrCs~C~tVt~v~e~~~r~~~~ 104 (118)
...+..+.|..|...---++.-.-.+|+.|+..|-...++.+.+-+
T Consensus 32 ~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~~~ 77 (79)
T 2k2d_A 32 QNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRISLD 77 (79)
T ss_dssp -CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCCCC
T ss_pred hCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCCCC
Confidence 3567889999999988888877777899999988766665554443
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.93 E-value=3.9 Score=24.05 Aligned_cols=31 Identities=32% Similarity=0.697 Sum_probs=22.9
Q ss_pred ceeEecCCCCe-eEeecCCCCeEecCCCCcCc
Q 033496 23 QSQLVCSGCRN-LLLYPVGATSVCCAVCNAVT 53 (118)
Q Consensus 23 ~sQlvC~GCr~-lL~YprGA~sVrC~~C~tVn 53 (118)
...++|-.|.. -|.|-..+....|..|..|-
T Consensus 3 ~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SSCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred CccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 44567888877 77887777778888887754
No 13
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=67.34 E-value=4.4 Score=27.51 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=31.1
Q ss_pred CeEecCCCCcCccCCC---CCCceeEEEeCCcCceeeeecCCCe
Q 033496 42 TSVCCAVCNAVTAVPP---PGTEMAQLVCGGCHTLLMYIRGATS 82 (118)
Q Consensus 42 ~sVrC~~C~tVn~vp~---~~~~~aql~CGgCrtlLmYP~GA~s 82 (118)
+.+.|+.|++.+++-- -....+.+.|+.|...-.+..++.+
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 5688999999987632 1355899999999988877776643
No 14
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=65.62 E-value=6.9 Score=25.68 Aligned_cols=30 Identities=23% Similarity=0.477 Sum_probs=24.0
Q ss_pred eEEEeCCcCceeeeecCCCeEeCCCCCccccc
Q 033496 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA 94 (118)
Q Consensus 63 aql~CGgCrtlLmYP~GA~sVrCs~C~tVt~v 94 (118)
+-+.|- |+..+.--.|+.+.+|+ |+.+-.+
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 457788 88888888899999998 9887544
No 15
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=64.20 E-value=7.4 Score=26.86 Aligned_cols=38 Identities=26% Similarity=0.577 Sum_probs=21.2
Q ss_pred eeEEEeCCcC-ceeeeecCCCeEeCCCCCccccccccccc
Q 033496 62 MAQLVCGGCH-TLLMYIRGATSVQCSCCHTVNLALEGCTR 100 (118)
Q Consensus 62 ~aql~CGgCr-tlLmYP~GA~sVrCs~C~tVt~v~e~~~r 100 (118)
...+.|.+|. ...+|-+-++.|.|..|+++ ++.+.+-+
T Consensus 34 Fm~VkCp~C~~~~~VFShA~t~V~C~~Cgtv-L~~PTGGK 72 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSHSQTVVVCPGCQTV-LCQPTGGK 72 (86)
T ss_dssp EEEEECTTTCCEEEEETTCSSCCCCSSSCCC-CSCCCSSS
T ss_pred EeEEECCCCCCeeEEEecCCcEEEccCCCCE-eecCCCCC
Confidence 3446666664 34556666666666666666 44444433
No 16
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=61.78 E-value=8.4 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=26.3
Q ss_pred eeEEEeCCcC-ceeeeecCCCeEeCCCCCcccccccccccchh
Q 033496 62 MAQLVCGGCH-TLLMYIRGATSVQCSCCHTVNLALEGCTRQLW 103 (118)
Q Consensus 62 ~aql~CGgCr-tlLmYP~GA~sVrCs~C~tVt~v~e~~~r~~~ 103 (118)
...+.|.+|. ....|-+-++-|+|..|+++ ++.+.+-+..+
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~-L~~PTGGKA~l 46 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRT-VAEPTGGKGNI 46 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCE-EEECCSSSCEE
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCE-EeecCCcceee
Confidence 3456777775 35667777777777777777 55555544433
No 17
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=59.75 E-value=6 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=25.7
Q ss_pred eeEEEeCC--cCcee----eeecCCCeEeCCCCCccccccccc
Q 033496 62 MAQLVCGG--CHTLL----MYIRGATSVQCSCCHTVNLALEGC 98 (118)
Q Consensus 62 ~aql~CGg--CrtlL----mYP~GA~sVrCs~C~tVt~v~e~~ 98 (118)
..-+.|.. ||..| .+-.|....+|..|...|.+.++-
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y 49 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSY 49 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCC
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHH
Confidence 34455554 55544 345677899999999999987654
No 18
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=57.87 E-value=1.7 Score=29.82 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=18.1
Q ss_pred eEecCCCCcCccCCCCCCceeEEEeCCcCcee
Q 033496 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 74 (118)
Q Consensus 43 sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlL 74 (118)
++.|+.|.++|.+|. ......-.||.|+..|
T Consensus 14 ~~~c~~c~~~~~~~~-~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPS-DRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEG-GGTTSCCBCTTTCCBS
T ss_pred eEECccccccccCCc-ccccCCCCCCcCCccc
Confidence 467777777777653 2223344677776555
No 19
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=53.65 E-value=9.3 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=19.3
Q ss_pred eEecCCCCeeE----eecCCCCeEecCCCCcCccCCC
Q 033496 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (118)
Q Consensus 25 QlvC~GCr~lL----~YprGA~sVrC~~C~tVn~vp~ 57 (118)
=+.|..||..| .+-.|....+|..|++.|.+|+
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 35666666654 3445556666666666666553
No 20
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=53.25 E-value=7.9 Score=34.53 Aligned_cols=35 Identities=29% Similarity=0.768 Sum_probs=25.9
Q ss_pred ceeEecCCCCeeE----eecCCCCeEecCCCCcCccCCC
Q 033496 23 QSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (118)
Q Consensus 23 ~sQlvC~GCr~lL----~YprGA~sVrC~~C~tVn~vp~ 57 (118)
.+=+.|..||..| .+-.|....+|..|+..|.+|+
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCch
Confidence 3457888888865 4556777888888888888774
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.93 E-value=4.1 Score=31.20 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=6.8
Q ss_pred EEeCCcCceeeee
Q 033496 65 LVCGGCHTLLMYI 77 (118)
Q Consensus 65 l~CGgCrtlLmYP 77 (118)
+.|-.|..+|.|.
T Consensus 223 v~Cp~CgRIL~~~ 235 (256)
T 3na7_A 223 ITCPYCGRILYAE 235 (256)
T ss_dssp EECTTTCCEEECS
T ss_pred EECCCCCeeEEeC
Confidence 4555555555544
No 22
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=52.73 E-value=8.3 Score=34.39 Aligned_cols=35 Identities=26% Similarity=0.769 Sum_probs=25.8
Q ss_pred ceeEecCCCCeeE----eecCCCCeEecCCCCcCccCCC
Q 033496 23 QSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (118)
Q Consensus 23 ~sQlvC~GCr~lL----~YprGA~sVrC~~C~tVn~vp~ 57 (118)
.+=+.|..||..| .+-.|....+|..|+..|.+|+
T Consensus 92 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 130 (766)
T 3eh2_A 92 SGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPP 130 (766)
T ss_dssp GCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCT
T ss_pred CCCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCH
Confidence 3447888888865 3455777888888888888775
No 23
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=50.32 E-value=4.1 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=19.5
Q ss_pred eEecCCCCcCccCCCCCCceeEEEeCCcCcee
Q 033496 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 74 (118)
Q Consensus 43 sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlL 74 (118)
.+.|+.|.+.|.+|. ........||.|...|
T Consensus 5 ~~~c~~c~~~n~~p~-~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NTVCTACMATNRLPE-ERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EEECTTTCCEEEEES-SCSCSCCBCTTTCCBT
T ss_pred EEECcccccccCCCC-cccccCCcchhcCCcc
Confidence 566778888777664 3333445677776654
No 24
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=48.45 E-value=15 Score=24.03 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=24.8
Q ss_pred ceeEecCCCCeeEeecCCCCeEecCCCCcCccC
Q 033496 23 QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAV 55 (118)
Q Consensus 23 ~sQlvC~GCr~lL~YprGA~sVrC~~C~tVn~v 55 (118)
..-++|. |+.++.-..|+...+|. |...-.+
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 4557898 99998888999999998 8876544
No 25
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=47.10 E-value=14 Score=33.96 Aligned_cols=31 Identities=23% Similarity=0.611 Sum_probs=17.3
Q ss_pred EecCCCCeeE----eecCCCCeEecCCCCcCccCC
Q 033496 26 LVCSGCRNLL----LYPVGATSVCCAVCNAVTAVP 56 (118)
Q Consensus 26 lvC~GCr~lL----~YprGA~sVrC~~C~tVn~vp 56 (118)
+.|..||..| .+-.|....+|..|+..|.+|
T Consensus 229 vRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P 263 (926)
T 1m2v_B 229 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP 263 (926)
T ss_dssp CBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECC
T ss_pred CccCCccCEecCceEEeCCCCEEEccCCCCCCCCc
Confidence 5566666544 344555556666666666554
No 26
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.65 E-value=26 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.679 Sum_probs=9.2
Q ss_pred cCCCCeeEeecCCCCeEecCCC
Q 033496 28 CSGCRNLLLYPVGATSVCCAVC 49 (118)
Q Consensus 28 C~GCr~lL~YprGA~sVrC~~C 49 (118)
|-+|..++....+...|.|+.|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C 49 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQC 49 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTT
T ss_pred CcCCCchheecCCCCceEeCCC
Confidence 4444444444333333444433
No 27
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=36.66 E-value=18 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.9
Q ss_pred ceeEEEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 61 ~~aql~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
+...-.|..|.-.++|-.++...+|.-|.++
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 3456789999999999999999999999986
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.87 E-value=21 Score=20.69 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=24.7
Q ss_pred ecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCeEeCCCCCcccccc
Q 033496 45 CCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAL 95 (118)
Q Consensus 45 rC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~sVrCs~C~tVt~v~ 95 (118)
.|+.|...-..|. ...=+|..|..|-.. .+.+|+.|+......
T Consensus 8 ~C~IC~~~~~~p~-~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 8 RCQQCQAEAKCPK-LLPCLHTLCSGCLEA-------SGMQCPICQAPWPLG 50 (56)
T ss_dssp SCSSSCSSCBCCS-CSTTSCCSBTTTCSS-------SSSSCSSCCSSSSCC
T ss_pred CceEeCCccCCeE-EcCCCCcccHHHHcc-------CCCCCCcCCcEeecC
Confidence 3555544333221 122466777778655 467899998875543
No 29
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=34.30 E-value=17 Score=24.75 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=18.9
Q ss_pred CCCCceeEecCCCCeeEeecCCCCeEecCCCCcCcc
Q 033496 19 ANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA 54 (118)
Q Consensus 19 ~~~~~sQlvC~GCr~lL~YprGA~sVrC~~C~tVn~ 54 (118)
.+..|....|-.|+.|+.+- .|+.|..-+.
T Consensus 17 ~~~~m~~rAC~~C~~v~~~d------~CPnCgs~~~ 46 (81)
T 3p8b_A 17 RGSHMSEKACRHCHYITSED------RCPVCGSRDL 46 (81)
T ss_dssp -----CCEEETTTCBEESSS------SCTTTCCCCE
T ss_pred CCcchhHHHHhhCCCccCCC------CCCCCCCCcc
Confidence 45566777899999888653 5888877553
No 30
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=33.46 E-value=21 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=19.9
Q ss_pred EEeCCcCceeeeec----CCCeEeCCCCCccccc
Q 033496 65 LVCGGCHTLLMYIR----GATSVQCSCCHTVNLA 94 (118)
Q Consensus 65 l~CGgCrtlLmYP~----GA~sVrCs~C~tVt~v 94 (118)
.-|..|..+|.... +...+.|..|.+...+
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 45777777776663 3456788888776543
No 31
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=32.22 E-value=36 Score=19.51 Aligned_cols=22 Identities=23% Similarity=0.724 Sum_probs=17.5
Q ss_pred EEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 65 l~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
..|.-|+.+|. +..+|..|.+.
T Consensus 15 t~C~~C~~~l~-----qG~~C~~C~~~ 36 (52)
T 1faq_A 15 AFCDICQKFLL-----NGFRCQTCGYK 36 (52)
T ss_dssp EECTTSSSEEC-----SEEECTTTTCC
T ss_pred cCCCCcccccc-----cCCEeCCCCCe
Confidence 57888888764 67899999865
No 32
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.51 E-value=25 Score=25.63 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=21.1
Q ss_pred eEEEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 63 aql~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
-.-.|..|+..| +|.+ ...+|+.|..+
T Consensus 139 v~a~~~~~g~~m-~~~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 139 LRALCSNCKTEM-VREG-DILKCPECGRV 165 (179)
T ss_dssp EECBCTTTCCBC-EECS-SSEECSSSCCE
T ss_pred EEecccccCCce-EECC-CEEECCCCCCE
Confidence 334566787665 9999 99999999987
No 33
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.09 E-value=26 Score=22.73 Aligned_cols=35 Identities=23% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEeCCcCceeeeecCCCeEeCCCCCc-cccccccccc
Q 033496 64 QLVCGGCHTLLMYIRGATSVQCSCCHT-VNLALEGCTR 100 (118)
Q Consensus 64 ql~CGgCrtlLmYP~GA~sVrCs~C~t-Vt~v~e~~~r 100 (118)
.-+|+.|....-.- ....++|.-|++ | +.-+.-.|
T Consensus 28 ~Y~C~~CG~~~e~~-~~d~irCp~CG~RI-LyK~R~~r 63 (70)
T 1twf_L 28 KYICAECSSKLSLS-RTDAVRCKDCGHRI-LLKARTKR 63 (70)
T ss_dssp CEECSSSCCEECCC-TTSTTCCSSSCCCC-CBCCCCSS
T ss_pred EEECCCCCCcceeC-CCCCccCCCCCceE-eEecCCCc
Confidence 34688888773222 345678888888 4 44444333
No 34
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=29.75 E-value=29 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=23.4
Q ss_pred EEeCCcCcee----eeecCCCeEeCCCCCccccccc
Q 033496 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLALE 96 (118)
Q Consensus 65 l~CGgCrtlL----mYP~GA~sVrCs~C~tVt~v~e 96 (118)
+.|..||.-| .+-.|....+|..|.+.|.+.+
T Consensus 113 vRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 113 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 4555555543 3456788999999999998865
No 35
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=29.42 E-value=65 Score=23.66 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=23.5
Q ss_pred CeEecCCCCcCc----------cCCCCCCceeEEEeCCcCceeeeecCCCeEeCCCCC
Q 033496 42 TSVCCAVCNAVT----------AVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCH 89 (118)
Q Consensus 42 ~sVrC~~C~tVn----------~vp~~~~~~aql~CGgCrtlLmYP~GA~sVrCs~C~ 89 (118)
-.++|+.|+.+- .-+-...+...+.||.|++.+-+ + -.|+.|+
T Consensus 26 ~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~--~---~~C~~Cg 78 (143)
T 2dkt_A 26 CLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHA--Q---QTCEDCS 78 (143)
T ss_dssp EEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECS--C---SBCSSSC
T ss_pred eeEECCCCCCccchhhhhccccccccchhccceeeecccCccccc--c---CcCCCCC
Confidence 356777776531 11111234557788888877744 2 1566554
No 36
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=27.87 E-value=44 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=17.2
Q ss_pred EEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 65 l~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
..|.-|..+| +.+.++|..|.++
T Consensus 23 t~C~~C~~~i----~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 23 GWCDLCGREV----LRQALRCANCKFT 45 (59)
T ss_dssp EECTTTCSEE----CSCCEECTTTSCE
T ss_pred eEchhcchhh----hhCccEeCCCCCe
Confidence 5688888777 5677888888765
No 37
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=27.46 E-value=34 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=23.8
Q ss_pred EEeCCcCcee----eeecCCCeEeCCCCCccccccc
Q 033496 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLALE 96 (118)
Q Consensus 65 l~CGgCrtlL----mYP~GA~sVrCs~C~tVt~v~e 96 (118)
+.|..||.-| .+-.|....+|..|.+.|.+.+
T Consensus 229 vRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 229 VRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 4566665544 3556889999999999998864
No 38
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=25.43 E-value=30 Score=30.84 Aligned_cols=33 Identities=27% Similarity=0.623 Sum_probs=25.8
Q ss_pred EEeCCcCcee----eeecCCCeEeCCCCCcccccccc
Q 033496 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLALEG 97 (118)
Q Consensus 65 l~CGgCrtlL----mYP~GA~sVrCs~C~tVt~v~e~ 97 (118)
+.|..||.-| .+-.|....+|..|...|.+.++
T Consensus 99 vRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 99 VRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp CBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 5777777654 45667789999999999998755
No 39
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.10 E-value=53 Score=21.13 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=9.2
Q ss_pred eeEecCCCCeeEeecC
Q 033496 24 SQLVCSGCRNLLLYPV 39 (118)
Q Consensus 24 sQlvC~GCr~lL~Ypr 39 (118)
.-|+|--|+.-|.|-.
T Consensus 7 ~iL~CP~ck~~L~~~~ 22 (70)
T 2js4_A 7 DILVCPVCKGRLEFQR 22 (70)
T ss_dssp CCCBCTTTCCBEEEET
T ss_pred hheECCCCCCcCEEeC
Confidence 3456666666666644
No 40
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.68 E-value=40 Score=21.62 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=12.3
Q ss_pred EEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 65 l~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
|.|-.|+..|.|-.......|..|+..
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 344444444444444444444444443
No 41
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.34 E-value=46 Score=21.41 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEeCCcCceeeeecCCCeEeCCCCCccccc
Q 033496 64 QLVCGGCHTLLMYIRGATSVQCSCCHTVNLA 94 (118)
Q Consensus 64 ql~CGgCrtlLmYP~GA~sVrCs~C~tVt~v 94 (118)
-+.|-.|+..|.|-.......|..|+..-.|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 4567777777777666666777777665443
No 42
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=24.30 E-value=34 Score=30.49 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=24.8
Q ss_pred EEeCCcCcee----eeecCCCeEeCCCCCcccccccc
Q 033496 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLALEG 97 (118)
Q Consensus 65 l~CGgCrtlL----mYP~GA~sVrCs~C~tVt~v~e~ 97 (118)
+.|..||.-| .+-.|....+|..|...|.+.++
T Consensus 95 vRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 95 LRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp CBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 5666666644 34557789999999999998755
No 43
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.21 E-value=42 Score=21.50 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=9.9
Q ss_pred EeCCcCceeeeecCCCeEeCCCCCc
Q 033496 66 VCGGCHTLLMYIRGATSVQCSCCHT 90 (118)
Q Consensus 66 ~CGgCrtlLmYP~GA~sVrCs~C~t 90 (118)
.|-.|+..|.|-.......|..|+.
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKL 34 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 3334444444433333344444433
No 44
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.91 E-value=45 Score=18.82 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=15.6
Q ss_pred ecCCCCeeEeecCCCCeEecCCCCc
Q 033496 27 VCSGCRNLLLYPVGATSVCCAVCNA 51 (118)
Q Consensus 27 vC~GCr~lL~YprGA~sVrC~~C~t 51 (118)
.|.-|+.+| +-.+....+|..|..
T Consensus 13 ~C~~C~~~l-~g~~~qg~~C~~C~~ 36 (50)
T 1ptq_A 13 FCDHCGSLL-WGLVKQGLKCEDCGM 36 (50)
T ss_dssp BCTTTCCBC-CSSSSCEEEETTTCC
T ss_pred CcCCCCcee-eccCCccCEeCCCCC
Confidence 577777766 444556677777754
No 45
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.41 E-value=36 Score=21.88 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=6.5
Q ss_pred eEEEeCCcCceeeee
Q 033496 63 AQLVCGGCHTLLMYI 77 (118)
Q Consensus 63 aql~CGgCrtlLmYP 77 (118)
..|+|..|+ +.||
T Consensus 25 ~~LiC~~cg--~~YP 37 (69)
T 2pk7_A 25 TELISKGAG--LAYP 37 (69)
T ss_dssp SEEEETTTT--EEEE
T ss_pred CEEEcCCCC--cEec
Confidence 445555554 4444
No 46
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=22.55 E-value=38 Score=30.17 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=20.8
Q ss_pred EecCCCCeeE----eecCCCCeEecCCCCcCccCCC
Q 033496 26 LVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (118)
Q Consensus 26 lvC~GCr~lL----~YprGA~sVrC~~C~tVn~vp~ 57 (118)
+.|..||..| .+..| ...+|..|+..|.+|+
T Consensus 86 ~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCG
T ss_pred CcccCccCEeCCceEEecC-CEEEcccccCCCCCCH
Confidence 6777777754 23344 6777777777777764
No 47
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.71 E-value=70 Score=19.22 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=15.1
Q ss_pred EeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 66 VCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 66 ~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
.|-.|...++.-.......|..|+++
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cCCCCCCceEEecCCCeEECCCCCCE
Confidence 46666553333334467777777765
No 48
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.59 E-value=27 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.512 Sum_probs=16.7
Q ss_pred CCceeEecCCCCee-------EeecCCCCeEecCCCCcC
Q 033496 21 GAQSQLVCSGCRNL-------LLYPVGATSVCCAVCNAV 52 (118)
Q Consensus 21 ~~~sQlvC~GCr~l-------L~YprGA~sVrC~~C~tV 52 (118)
.++-+-.|..|.+- ..|-+|..-|+|+.|+.-
T Consensus 9 ~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 9 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred cEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 34445555555442 345556666666666544
No 49
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.14 E-value=1.6e+02 Score=19.62 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=46.5
Q ss_pred EecCCCCeeEeecCCCCeEecCCCCcCccCCCCCCceeEEEeCCcCcee--eeecCCCeEeCCCCCcccccccccccchh
Q 033496 26 LVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL--MYIRGATSVQCSCCHTVNLALEGCTRQLW 103 (118)
Q Consensus 26 lvC~GCr~lL~YprGA~sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlL--mYP~GA~sVrCs~C~tVt~v~e~~~r~~~ 103 (118)
+.|--|+..|.- .+....|..|+.- .. .+..|-.|...| .=-=||.+.-|..|+.. -+-+|-.|
T Consensus 3 ~~CP~C~~~l~~--~~~~~~C~~C~~~-~~-------~~afCPeCgq~Le~lkACGA~~yFC~~C~~L----iSkkrv~f 68 (81)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKD-FS-------LQALCPDCRQPLQVLKACGAVDYFCQNGHGL----ISKKRVNF 68 (81)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCE-EE-------EEEECSSSCSCCCEEEETTEEEECCTTTTCC----CCTTSSEE
T ss_pred CCCCCCCCcccc--CCCceECcccccc-CC-------CcccCcchhhHHHHHHhcCCcCeeeccCCCE----eecceEEE
Confidence 678888888874 3447789888862 21 233888888888 44668889999999876 33445555
Q ss_pred hhcc
Q 033496 104 ELQD 107 (118)
Q Consensus 104 ~~~~ 107 (118)
+.+.
T Consensus 69 ~~~~ 72 (81)
T 2jrp_A 69 VISD 72 (81)
T ss_dssp EECC
T ss_pred Eecc
Confidence 5443
No 50
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.03 E-value=13 Score=24.98 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=32.8
Q ss_pred CceeEecCCCCeeEeecCCCCeEecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCeEeCCCCCc
Q 033496 22 AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHT 90 (118)
Q Consensus 22 ~~sQlvC~GCr~lL~YprGA~sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~sVrCs~C~t 90 (118)
..++-.|.-|+.-|- ..+.+.+.|..| .|.+|..||+.. .+ ..-+|.+|+-
T Consensus 22 ~~~~r~CarC~~~LG-~l~~~g~~C~~C-------------k~rVC~~Crv~~---~~-~~W~C~VC~k 72 (76)
T 2csz_A 22 HYSDRTCARCQESLG-RLSPKTNTCRGC-------------NHLVCRDCRIQE---SN-GTWRCKVCSG 72 (76)
T ss_dssp TCCCCBCSSSCCBCS-SSCTTTSEETTT-------------TEECCTTSEEEC---ST-TCEEEHHHHS
T ss_pred CCCccchhhhCcccc-ccccCCCcCccc-------------ChhhcccccccC---CC-CCEEEeeCch
Confidence 345667777777765 344445556665 467899998764 23 6678877754
No 51
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=20.94 E-value=48 Score=29.52 Aligned_cols=32 Identities=28% Similarity=0.592 Sum_probs=22.0
Q ss_pred EEeCCcCcee----eeecCCCeEeCCCCCcccccccc
Q 033496 65 LVCGGCHTLL----MYIRGATSVQCSCCHTVNLALEG 97 (118)
Q Consensus 65 l~CGgCrtlL----mYP~GA~sVrCs~C~tVt~v~e~ 97 (118)
+.|..||.-| .+..| ...+|..|...|.+.++
T Consensus 86 ~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~~ 121 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEE 121 (751)
T ss_dssp CBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCGG
T ss_pred CcccCccCEeCCceEEecC-CEEEcccccCCCCCCHH
Confidence 4555555533 23344 89999999999998764
No 52
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=20.76 E-value=53 Score=20.77 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=17.9
Q ss_pred EEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 65 LVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 65 l~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
..|..|..+| +.+-++|..|.+.
T Consensus 36 t~C~~C~~~l----~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 36 GWCDLCGREV----LRQALRCANCKFT 58 (72)
T ss_dssp CBCTTTSSBC----SSCCEECTTSSCE
T ss_pred cchhhhhHHH----HhCcCccCCCCCe
Confidence 4588888888 5677889888775
No 53
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=20.50 E-value=32 Score=24.55 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=36.5
Q ss_pred eeEecCCCCeeEeecCCCCeEecCCCCcCccCCCCCCceeEEEeCCcCceeeeecCCCeEeCCCCCcc
Q 033496 24 SQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 91 (118)
Q Consensus 24 sQlvC~GCr~lL~YprGA~sVrC~~C~tVn~vp~~~~~~aql~CGgCrtlLmYP~GA~sVrCs~C~tV 91 (118)
++-.|.-|...+- ..+...+.|..|+ +-+|..|+.-.-+-.....-.|..|+--
T Consensus 54 ~~~~C~~C~~~~g-~l~~~g~~C~~C~-------------~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLG-MLGSASVVCEDCK-------------KNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCS-TTSCCEEECTTTC-------------CEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcc-cccCCCCCCCCCC-------------cccccccCCccCCCCCccceechhhHHH
Confidence 4556777877775 3445567777775 3578888887766556677778777653
No 54
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.41 E-value=66 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=18.7
Q ss_pred EeCCcCceeeeecC----CCeEeCCCCCcccccc
Q 033496 66 VCGGCHTLLMYIRG----ATSVQCSCCHTVNLAL 95 (118)
Q Consensus 66 ~CGgCrtlLmYP~G----A~sVrCs~C~tVt~v~ 95 (118)
-|..|..+|....+ ...+.|..|.++-.+.
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 46677776655443 2367888888875543
Done!