BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033497
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 43 QDQPKSHDGQTNSELTVSSLPTVAATE-------GRCTVCMENFLQAFPGKQVPCGHVFH 95
++ P + S+ + +LPTV T+ +C VCM+ F KQ+PC HVFH
Sbjct: 180 ENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFH 239
Query: 96 ATCISTWISLSNSCPVCR 113
C+ W+ L NSCPVCR
Sbjct: 240 QDCLLPWLELHNSCPVCR 257
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 43 QDQPKSHDGQTNSELTVSSLPTVAATE-------GRCTVCMENFLQAFPGKQVPCGHVFH 95
++ P + S+ + +LP V T+ +C VCM++F + KQ+PC H++H
Sbjct: 188 ENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYH 247
Query: 96 ATCISTWISLSNSCPVCR 113
C+ W+ L NSCPVCR
Sbjct: 248 KDCLLPWLELHNSCPVCR 265
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 19/95 (20%)
Query: 28 EALTMITNTSSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEGR------CTVCMENFLQ 81
+ L + NT P D+++ ++SLPTV T+ + C VC E++
Sbjct: 192 QLLGQLENTGPPPADKEK-------------ITSLPTVTVTQEQVNTGLECPVCKEDYTV 238
Query: 82 AFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
+Q+PC H FH++CI W+ L ++CPVCR +
Sbjct: 239 EEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 19/95 (20%)
Query: 28 EALTMITNTSSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEGR------CTVCMENFLQ 81
+ L + NT P D+++ ++SLPTV T+ + C VC E++
Sbjct: 191 QLLGQLENTGPPPADKEK-------------ITSLPTVTVTQEQVDMGLECPVCKEDYTV 237
Query: 82 AFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
+Q+PC H FH++CI W+ L ++CPVCR +
Sbjct: 238 EEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 19/101 (18%)
Query: 26 LDEALTMITNT--SSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEG------RCTVCME 77
LD +T + N ++ PP D+ K + +LPTV TE C VC E
Sbjct: 188 LDTIITQLLNQFENTGPPPADKEK-----------IQALPTVPVTEEHVGSGLECPVCKE 236
Query: 78 NFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVIA 118
++ +Q+PC H+FH +CI W+ +SCPVCR +
Sbjct: 237 DYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 277
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 65 VAATEGR----CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCR 113
V+++EG C VC + + GK++PCGH +H CI W+ NSCPVCR
Sbjct: 246 VSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 54 NSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCR 113
NS+ V S +AA + C +C E K++PC HVFHA C+ +W +CP CR
Sbjct: 274 NSQFPVVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
Query: 114 SGV 116
+ +
Sbjct: 334 TDI 336
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 55 SELTVSSLPTVAATEG------RCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNS 108
S+ V SLP V T +C VC+ F + +Q+PC H+FH+ CI W+ +NS
Sbjct: 56 SKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNS 115
Query: 109 CPVCRSGV 116
CP+CR +
Sbjct: 116 CPLCRHEL 123
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 42 DQDQPKSHDGQTNSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101
D DQP+ + L + S A + C+VC+ + + +++PC H +H CI
Sbjct: 541 DDDQPRGLTKEQIDNLAMRSFGENDALKT-CSVCITEYTEGNKLRKLPCSHEYHVHCIDR 599
Query: 102 WISLSNSCPVCRSGVIA 118
W+S +++CP+CR V+A
Sbjct: 600 WLSENSTCPICRRAVLA 616
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 42 DQDQPKSHDGQTNSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101
D+DQP+ + L + S A + C+VC+ + + +++PC H +H CI
Sbjct: 517 DEDQPRGLTKEQIDNLAMRSFGENDALKT-CSVCITEYTEGNKLRKLPCSHEYHVHCIDR 575
Query: 102 WISLSNSCPVCRSGVIA 118
W+S +++CP+CR V++
Sbjct: 576 WLSENSTCPICRRAVLS 592
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 59 VSSLPTVAATEG------RCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVC 112
V SLP V T +C VC+ F + +Q+PC H+FH++CI W+ +NSCP+C
Sbjct: 60 VESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLC 119
Query: 113 RSGV 116
R +
Sbjct: 120 RHEL 123
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 25 NLDEALTMITNT--SSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEG------RCTVCM 76
LD +T + N ++ PP D+ K + +LPTV TE C VC
Sbjct: 185 GLDAIITQLLNQFENTGPPPADKEK-----------IQALPTVPVTEEHVGSGLECPVCK 233
Query: 77 ENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVIA 118
+++ +Q+PC H+FH CI W+ +SCPVCR +
Sbjct: 234 DDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTG 275
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 25 NLDEALTMITNT--SSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEG------RCTVCM 76
LD +T + N ++ PP D+ K + +LPTV TE C VC
Sbjct: 188 GLDAIITQLLNQFENTGPPPADKEK-----------IQALPTVPVTEEHVGSGLECPVCK 236
Query: 77 ENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
+++ +Q+PC H+FH CI W+ +SCPVCR +
Sbjct: 237 DDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 26 LDEALTMITNTSSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEG------RCTVCMENF 79
+ + L NT P D D+ + +LPT+ TE C VC E++
Sbjct: 189 ITQLLNQFENTGPPPADTDK-------------IQALPTIQITEEHVGFGLECPVCKEDY 235
Query: 80 LQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
+Q+PC H+FH CI W+ ++CPVCR +
Sbjct: 236 TVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 54 NSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCR 113
NS+ V S ++A + C +C E K++PC HVFHA C+ +W +CP CR
Sbjct: 274 NSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
Query: 114 SGV 116
+ +
Sbjct: 334 TDI 336
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 26 LDEALTMITNT--SSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEG------RCTVCME 77
LD +T + N ++ PP D K + +LPT+ TE C VC E
Sbjct: 184 LDTIITQLLNQFENTGPPPADTEK-----------IQALPTIQITEEHVGSGLECPVCKE 232
Query: 78 NFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
++ +Q+PC H+FH CI W+ ++CPVCR +
Sbjct: 233 DYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 58 TVSSLPTV-----AATEG-RCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPV 111
V SLP V A +G +C VC+ F + +++PC H+FH CI W++ +NSCP+
Sbjct: 59 VVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPL 118
Query: 112 CR 113
CR
Sbjct: 119 CR 120
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 57 LTVSSLPTVAATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSNSCPVCRSG 115
+ V S+ T + C+VC+ F + G+ +P CGHVFH CI TW +SCP+CR+
Sbjct: 98 IFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAP 157
Query: 116 V 116
V
Sbjct: 158 V 158
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 26 LDEALTMITNT--SSTPPDQDQPKSHDGQTNSELTVSSLPTVAATEG------RCTVCME 77
LD +T + N ++ PP D K + +LPT+ TE C VC E
Sbjct: 185 LDTIITQLLNQFENTGPPPADNEK-----------IQALPTIQITEEHVGSGLECPVCKE 233
Query: 78 NFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
++ +Q+PC H+FH CI W+ ++CPVCR +
Sbjct: 234 DYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 69 EGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
EG CT+CME F Q+PC H FH CI W+ ++ +C +CR+ V
Sbjct: 393 EGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 46 PKSHDGQTNSELTVSSLPTVAATEGR----------CTVCMENFLQAFPGKQVP-CGHVF 94
P+ D + + S P+ TE R C VC+ F + VP C HVF
Sbjct: 54 PRGLDAEA-----IKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVF 108
Query: 95 HATCISTWISLSNSCPVCRSGVI 117
HA C+ W+S S++CP+CR+ V+
Sbjct: 109 HADCVDIWLSHSSTCPICRAKVV 131
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 56 ELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSNSCPVCRS 114
+ S T E C VC + F Q + +P CGHVFH C+ TW+ +++CP+CR+
Sbjct: 94 QFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRA 153
Query: 115 GV 116
V
Sbjct: 154 RV 155
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 42 DQDQPKSHDGQTNSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101
D DQP+ + L+ + A + C+VC+ + + +++PC H +H CI
Sbjct: 556 DDDQPRGLTKEQIDNLSTRNFGENDALKT-CSVCITEYTEGNKLRKLPCSHEYHVHCIDR 614
Query: 102 WISLSNSCPVCRSGVI 117
W+S +++CP+CR V+
Sbjct: 615 WLSENSTCPICRRAVL 630
>sp|Q8SV35|Y733_ENCCU Uncharacterized RING finger protein ECU07_0330 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU07_0330 PE=4 SV=1
Length = 314
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 53 TNSELTVSSL-PTVAATEG-RCTVCMENFLQAFPGKQVPCGHVFHATCISTW-ISLSNSC 109
T L SS+ V A +G C +CM NF++ + +PC H FH C+ W + SN C
Sbjct: 248 TKESLKKSSIVRAVEADKGCECAICMSNFIKNQRLRVLPCDHRFHVGCVDKWLLGHSNKC 307
Query: 110 PVCRSGV 116
PVCR+ +
Sbjct: 308 PVCRTAI 314
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 55 SELTVSSLPTVAATE---------GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL 105
S+ V LP + TE C +C EN + +++PC H FH C+ W+
Sbjct: 204 SKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDE 263
Query: 106 SNSCPVCR 113
NSCP+CR
Sbjct: 264 HNSCPICR 271
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 51 GQTNSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCP 110
G + V++ +A C +C ++ +QA +++PCGH+FH +C+ +W+ SCP
Sbjct: 320 GNMEARFAVATPEELAVNNDDCAICWDS-MQA--ARKLPCGHLFHNSCLRSWLEQDTSCP 376
Query: 111 VCR 113
CR
Sbjct: 377 TCR 379
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 42 DQDQPKSHDGQTNSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101
D DQP+ + L+ + A + C+VC+ + + +++PC H +H CI
Sbjct: 539 DDDQPRGLTKEQIDNLSTRNFGENDALKT-CSVCITEYTEGNKLRKLPCSHEYHIHCIDR 597
Query: 102 WISLSNSCPVCRSGVI 117
W+S +++CP+CR V+
Sbjct: 598 WLSENSTCPICRRAVL 613
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 57 LTVSSLPTVAATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSNSCPVCRSG 115
TV + VAA+ C VC+ + +++P C H+FH C+ TW++ ++CPVCR+
Sbjct: 93 FTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTE 152
Query: 116 V 116
V
Sbjct: 153 V 153
>sp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2
SV=1
Length = 217
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 56 ELTVSSLPTVAATEGR-------CTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSN 107
E T+ S P + +E + C +C+ ++ +Q+P C H+FH CI TW+ L+
Sbjct: 124 EDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNP 183
Query: 108 SCPVCRS 114
+CPVCR+
Sbjct: 184 TCPVCRT 190
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 28 EALTMITNTSSTPPDQDQPK--SHDGQTNSELTVSSLP--TVAATEGRCTVCMENFLQAF 83
EA + S+P ++ + SH+ + + E + P T+ TE C VC+ENF
Sbjct: 572 EACSCANKCVSSPCERKRRSYGSHNTKEDMEPDWLTWPAGTLHCTE--CVVCLENFENGC 629
Query: 84 PGKQVPCGHVFHATCISTWISLS-NSCPVCR 113
+PCGHVFH CI W++ + CPVCR
Sbjct: 630 LLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 660
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 28 EALTMITNTSSTPPDQDQPK--SHDGQTNSELTVSSLP--TVAATEGRCTVCMENFLQAF 83
EA + S+P ++ + SH+ + E + P T+ TE C VC+ENF
Sbjct: 573 EACSCANKCESSPCERKRRSYGSHNTDEDMEPDWLTWPAGTLHCTE--CVVCLENFENGC 630
Query: 84 PGKQVPCGHVFHATCISTWISLS-NSCPVCR 113
+PCGHVFH CI W++ + CPVCR
Sbjct: 631 LLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 661
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 51 GQTNSELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCP 110
G + V++ +A C +C ++ A +++PCGH+FH +C+ +W+ SCP
Sbjct: 320 GNMEARFAVATPEELAVNNDDCAICWDSMQAA---RKLPCGHLFHNSCLRSWLEQDTSCP 376
Query: 111 VCR 113
CR
Sbjct: 377 TCR 379
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 72 CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117
C +C E+ + K++PCGH+FH TC+ +W +CP CR ++
Sbjct: 289 CIICREDMVNH--SKKLPCGHIFHTTCLRSWFQRQQTCPTCRLNIL 332
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 72 CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117
C+VC+ + + +++PC H +H CI W+S +++CP+CR V+
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVL 748
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 59 VSSLPTVAATEG------RCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSNSCPV 111
V SLP T+ C +C+ +F + K +P CGHVFH C+ TW+S +CP+
Sbjct: 121 VRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPL 180
Query: 112 CRS 114
CRS
Sbjct: 181 CRS 183
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 11/67 (16%)
Query: 57 LTVSSLPT--------VAATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSN 107
L ++SLPT VA TE C VC+ + + +P C HVFH +C+ TW++ +
Sbjct: 79 LVIASLPTFVVGIKNDVAGTE--CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQS 136
Query: 108 SCPVCRS 114
+CPVCR+
Sbjct: 137 TCPVCRT 143
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 65 VAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117
+ AT+ C +C E + K++PC H+FH++C+ +W +CP CR V+
Sbjct: 284 LQATDNVCIICREEMVTG--AKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVL 334
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 56 ELTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSG 115
EL L V G C +C+E F + +PC H FH CI W+ L+ CP CR
Sbjct: 219 ELPKFRLKAVPDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCS 278
Query: 116 V 116
V
Sbjct: 279 V 279
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
T+ +CT+C+ +++PC H+FH C+ W+++S CP+CR +
Sbjct: 291 TDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 55 SELTVSSLPTVAATEGR--------CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS 106
S+ ++ +LP + TE C +C +++ ++PC H FH C+S W+ S
Sbjct: 505 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS 564
Query: 107 NSCPVCR 113
+CPVCR
Sbjct: 565 GTCPVCR 571
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 58 TVSSLPTV----AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCR 113
V SLP A + +C VC+ F ++PC H+FH+ CI W+S +NSCP+CR
Sbjct: 70 VVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCR 129
Query: 114 SGV 116
+
Sbjct: 130 HEL 132
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
T+ +CT+C+ +++PC H+FH C+ W+++S CP+CR +
Sbjct: 290 TDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 55 SELTVSSLPTVAATEG----------RCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104
S+ + +LPT G RC +C + +PC HV+H+ CIS W+S
Sbjct: 170 SQELIETLPTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLS 229
Query: 105 LSNSCPVCRSGVIA 118
++ CPVC S V
Sbjct: 230 INKVCPVCNSEVFG 243
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 55 SELTVSSLPTVAATEGR--------CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS 106
S+ ++ +LP + TE C +C +++ ++PC H FH C+S W+ S
Sbjct: 570 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKS 629
Query: 107 NSCPVCR 113
+CPVCR
Sbjct: 630 GTCPVCR 636
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 68 TEGRCTVCMENFL-------QAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVIA 118
T+ C +CM++ L K +PCGH+ H C+ +W+ S +CP+CR V A
Sbjct: 316 TDSMCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPICRLSVFA 373
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 57 LTVSSLPTVAATEGRCTVCMENFL-----QAFPGK-----QVPCGHVFHATCISTWISLS 106
+TV L A + C +CM+ + Q + K ++PCGH+ H +C+ W+ S
Sbjct: 334 VTVEQLQNSANDDNICIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERS 393
Query: 107 NSCPVCR 113
+CP+CR
Sbjct: 394 QTCPICR 400
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 72 CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVIA 118
C+VC+ +++ +Q+PC H FH CI W+S + +CP+CR V+
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVLG 678
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 72 CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS-NSCPVCR 113
C VC+ENF +PCGHVFH CI W++ + CPVCR
Sbjct: 621 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCR 663
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 72 CTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117
C+VC+ +++ +Q+PC H FH CI W+S + +CPVCR V+
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPVL 659
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 57 LTVSSLPTVAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116
L +++ T+ A + C +C+ ++ +PC H FH+TCI W+ + +CP+C+ +
Sbjct: 292 LCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
Query: 117 I 117
+
Sbjct: 352 L 352
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,044,283
Number of Sequences: 539616
Number of extensions: 1623078
Number of successful extensions: 4961
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 4495
Number of HSP's gapped (non-prelim): 666
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)