Query 033497
Match_columns 118
No_of_seqs 137 out of 1570
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.6E-17 5.6E-22 97.6 5.0 51 67-117 38-88 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.7 1.4E-17 4.8E-22 89.0 3.2 51 67-117 3-54 (55)
3 2kiz_A E3 ubiquitin-protein li 99.7 4.4E-17 1.5E-21 91.0 4.8 51 67-117 12-62 (69)
4 1x4j_A Ring finger protein 38; 99.7 2.7E-17 9.2E-22 93.3 3.9 52 66-117 20-71 (75)
5 2ep4_A Ring finger protein 24; 99.7 5.3E-17 1.8E-21 91.8 4.5 51 67-117 13-63 (74)
6 2ect_A Ring finger protein 126 99.6 7.1E-17 2.4E-21 92.1 3.6 51 67-117 13-63 (78)
7 2ecm_A Ring finger and CHY zin 99.6 1.3E-16 4.5E-21 85.2 3.2 52 67-118 3-55 (55)
8 2ecl_A Ring-box protein 2; RNF 99.6 6.6E-16 2.2E-20 88.9 5.2 52 66-117 12-75 (81)
9 2ea6_A Ring finger protein 4; 99.6 2.8E-16 9.5E-21 87.5 3.2 52 66-117 12-67 (69)
10 3ng2_A RNF4, snurf, ring finge 99.6 2.8E-16 9.7E-21 88.0 3.0 52 66-117 7-62 (71)
11 4ayc_A E3 ubiquitin-protein li 99.6 2.9E-16 9.8E-21 98.8 3.4 47 68-117 52-98 (138)
12 2d8t_A Dactylidin, ring finger 99.6 3.6E-16 1.2E-20 87.8 3.4 49 66-117 12-60 (71)
13 2ysl_A Tripartite motif-contai 99.6 1.6E-15 5.5E-20 85.3 5.1 49 66-117 17-68 (73)
14 2djb_A Polycomb group ring fin 99.6 1.3E-15 4.3E-20 85.7 4.3 48 67-117 13-61 (72)
15 2csy_A Zinc finger protein 183 99.6 1.7E-15 5.9E-20 87.0 4.3 48 67-117 13-60 (81)
16 2xeu_A Ring finger protein 4; 99.6 8.2E-16 2.8E-20 84.3 2.8 50 68-117 2-55 (64)
17 2ecy_A TNF receptor-associated 99.6 2.3E-15 7.8E-20 83.3 4.3 49 66-117 12-61 (66)
18 2yur_A Retinoblastoma-binding 99.6 1.8E-15 6.1E-20 85.6 3.7 49 66-117 12-63 (74)
19 1v87_A Deltex protein 2; ring- 99.6 2E-15 6.8E-20 91.9 3.9 50 68-117 24-93 (114)
20 3dpl_R Ring-box protein 1; ubi 99.6 3.7E-15 1.3E-19 89.8 4.5 51 66-116 34-99 (106)
21 2ysj_A Tripartite motif-contai 99.5 8.2E-15 2.8E-19 80.3 5.4 44 66-112 17-63 (63)
22 1chc_A Equine herpes virus-1 r 99.5 1.7E-15 5.7E-20 84.2 2.5 49 67-117 3-51 (68)
23 2ecw_A Tripartite motif-contai 99.5 7.4E-15 2.5E-19 84.6 5.2 49 66-117 16-70 (85)
24 2ct2_A Tripartite motif protei 99.5 5E-15 1.7E-19 86.0 4.5 51 66-116 12-66 (88)
25 1t1h_A Gspef-atpub14, armadill 99.5 4.2E-15 1.4E-19 84.7 3.8 49 66-117 5-54 (78)
26 3lrq_A E3 ubiquitin-protein li 99.5 1.9E-15 6.4E-20 90.2 2.5 48 67-117 20-69 (100)
27 2ecn_A Ring finger protein 141 99.5 2.1E-15 7.3E-20 84.3 1.8 47 67-117 13-59 (70)
28 2ecv_A Tripartite motif-contai 99.5 8.6E-15 2.9E-19 84.4 4.1 49 66-117 16-70 (85)
29 2egp_A Tripartite motif-contai 99.5 3E-15 1E-19 85.4 1.7 49 66-117 9-64 (79)
30 3fl2_A E3 ubiquitin-protein li 99.5 8.6E-15 2.9E-19 90.4 3.3 48 67-117 50-98 (124)
31 2y43_A E3 ubiquitin-protein li 99.5 8.2E-15 2.8E-19 87.1 3.1 48 67-117 20-68 (99)
32 3ztg_A E3 ubiquitin-protein li 99.5 1.5E-14 5.1E-19 84.8 4.0 48 66-116 10-60 (92)
33 2ckl_A Polycomb group ring fin 99.5 1.6E-14 5.6E-19 87.1 4.1 48 67-117 13-61 (108)
34 2ecj_A Tripartite motif-contai 99.5 3.3E-14 1.1E-18 76.4 3.8 44 66-112 12-58 (58)
35 4ap4_A E3 ubiquitin ligase RNF 99.5 2.1E-14 7.2E-19 89.0 3.4 51 67-117 5-59 (133)
36 4a0k_B E3 ubiquitin-protein li 99.5 2.8E-15 9.5E-20 91.6 -1.2 52 65-116 44-110 (117)
37 2d8s_A Cellular modulator of i 99.5 2.8E-14 9.6E-19 81.8 2.9 52 65-117 11-69 (80)
38 1wgm_A Ubiquitin conjugation f 99.5 1E-13 3.5E-18 82.4 5.3 49 66-117 19-68 (98)
39 1g25_A CDK-activating kinase a 99.4 4.2E-14 1.4E-18 77.9 3.3 50 68-117 2-54 (65)
40 3l11_A E3 ubiquitin-protein li 99.4 1.4E-14 4.9E-19 88.2 0.8 48 66-116 12-60 (115)
41 2ckl_B Ubiquitin ligase protei 99.4 8.7E-14 3E-18 89.7 4.2 48 67-117 52-101 (165)
42 1z6u_A NP95-like ring finger p 99.4 5.8E-14 2E-18 89.4 3.3 47 68-117 77-124 (150)
43 2kr4_A Ubiquitin conjugation f 99.4 1.2E-13 4.2E-18 80.0 4.3 49 66-117 11-59 (85)
44 3hct_A TNF receptor-associated 99.4 7.3E-14 2.5E-18 85.5 3.2 50 65-117 14-64 (118)
45 1jm7_A BRCA1, breast cancer ty 99.4 5.5E-14 1.9E-18 85.1 2.6 47 68-117 20-69 (112)
46 2kre_A Ubiquitin conjugation f 99.4 2.9E-13 1E-17 80.7 5.5 49 66-117 26-74 (100)
47 1rmd_A RAG1; V(D)J recombinati 99.4 5.4E-14 1.8E-18 85.8 2.3 49 66-117 20-69 (116)
48 3knv_A TNF receptor-associated 99.4 6.3E-14 2.1E-18 88.4 2.6 49 65-116 27-76 (141)
49 1e4u_A Transcriptional repress 99.4 2.6E-13 8.8E-18 77.4 4.2 51 66-117 8-61 (78)
50 2vje_A E3 ubiquitin-protein li 99.4 1.8E-13 6.2E-18 75.2 2.4 47 68-117 7-56 (64)
51 4ap4_A E3 ubiquitin ligase RNF 99.4 2.3E-13 7.8E-18 84.3 2.7 52 66-117 69-124 (133)
52 2vje_B MDM4 protein; proto-onc 99.3 4E-13 1.4E-17 73.6 2.6 48 67-117 5-55 (63)
53 1bor_A Transcription factor PM 99.3 1.9E-13 6.3E-18 73.2 0.6 45 67-117 4-48 (56)
54 2y1n_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 95.1 3.9 46 69-117 332-378 (389)
55 4ic3_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 76.2 1.4 44 67-117 22-66 (74)
56 1jm7_B BARD1, BRCA1-associated 99.3 2.5E-13 8.4E-18 83.0 0.3 46 67-117 20-66 (117)
57 2ct0_A Non-SMC element 1 homol 99.3 2.2E-12 7.4E-17 72.7 3.7 49 67-117 13-63 (74)
58 3hcs_A TNF receptor-associated 99.2 4.1E-12 1.4E-16 82.2 3.0 49 66-117 15-64 (170)
59 2c2l_A CHIP, carboxy terminus 99.2 6.5E-12 2.2E-16 86.5 3.3 49 66-117 205-254 (281)
60 2ecg_A Baculoviral IAP repeat- 99.2 1.6E-12 5.3E-17 73.5 0.1 44 67-117 23-67 (75)
61 2yu4_A E3 SUMO-protein ligase 99.2 6.1E-12 2.1E-16 74.1 2.6 46 67-115 5-59 (94)
62 2ea5_A Cell growth regulator w 99.2 1.9E-11 6.6E-16 67.8 3.1 45 66-117 12-57 (68)
63 2f42_A STIP1 homology and U-bo 99.1 2.6E-11 8.9E-16 79.0 3.9 49 66-117 103-152 (179)
64 2yho_A E3 ubiquitin-protein li 99.1 8.4E-12 2.9E-16 71.3 0.6 43 68-117 17-60 (79)
65 3htk_C E3 SUMO-protein ligase 99.0 7.1E-10 2.4E-14 75.8 6.4 48 66-116 178-230 (267)
66 1wim_A KIAA0161 protein; ring 99.0 1.1E-10 3.9E-15 68.5 2.0 48 68-115 4-61 (94)
67 3t6p_A Baculoviral IAP repeat- 99.0 7.7E-11 2.6E-15 83.9 0.5 44 67-117 293-337 (345)
68 3k1l_B Fancl; UBC, ring, RWD, 99.0 9.1E-11 3.1E-15 82.9 0.4 51 67-117 306-372 (381)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.9 5.3E-10 1.8E-14 60.4 3.3 48 67-117 4-58 (60)
70 2bay_A PRE-mRNA splicing facto 98.9 7.8E-10 2.7E-14 60.0 1.9 45 70-117 4-49 (61)
71 3vk6_A E3 ubiquitin-protein li 98.7 1.5E-08 5.1E-13 59.4 3.0 45 71-117 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 1.9E-06 6.4E-11 58.5 3.7 45 69-116 180-227 (238)
73 2ko5_A Ring finger protein Z; 97.5 0.00017 5.9E-09 41.6 4.3 46 67-117 26-72 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.00052 1.8E-08 40.1 2.0 32 68-102 2-36 (101)
75 2lri_C Autoimmune regulator; Z 95.2 0.012 4.1E-07 31.8 2.3 46 67-115 10-59 (66)
76 1wil_A KIAA1045 protein; ring 95.2 0.028 9.5E-07 31.8 3.7 33 66-102 12-47 (89)
77 1we9_A PHD finger family prote 94.0 0.0059 2E-07 32.7 -0.9 48 67-114 4-57 (64)
78 3m62_A Ubiquitin conjugation f 93.1 0.087 3E-06 42.1 4.0 49 66-117 888-937 (968)
79 1f62_A Transcription factor WS 92.7 0.044 1.5E-06 27.7 1.3 45 71-115 2-50 (51)
80 2k16_A Transcription initiatio 92.2 0.018 6.2E-07 31.7 -0.7 48 67-115 16-68 (75)
81 2l5u_A Chromodomain-helicase-D 90.8 0.072 2.5E-06 28.1 0.8 45 67-114 9-57 (61)
82 3lqh_A Histone-lysine N-methyl 90.2 0.062 2.1E-06 34.8 0.3 46 70-115 3-63 (183)
83 1weu_A Inhibitor of growth fam 90.0 0.41 1.4E-05 27.4 3.6 47 67-115 34-85 (91)
84 1wep_A PHF8; structural genomi 89.5 0.2 6.8E-06 27.7 2.0 47 68-115 11-63 (79)
85 1mm2_A MI2-beta; PHD, zinc fin 89.4 0.047 1.6E-06 28.9 -0.6 48 66-116 6-57 (61)
86 3o36_A Transcription intermedi 88.6 0.061 2.1E-06 34.6 -0.7 45 68-115 3-51 (184)
87 1z60_A TFIIH basal transcripti 88.0 0.13 4.4E-06 27.1 0.5 43 70-112 16-58 (59)
88 2lv9_A Histone-lysine N-methyl 87.9 0.087 3E-06 30.6 -0.2 45 69-114 28-75 (98)
89 2cs3_A Protein C14ORF4, MY039 87.8 0.39 1.3E-05 26.8 2.4 37 67-104 13-51 (93)
90 1y02_A CARP2, FYVE-ring finger 87.3 0.04 1.4E-06 33.3 -2.0 46 67-112 17-63 (120)
91 2vpb_A Hpygo1, pygopus homolog 86.6 0.44 1.5E-05 25.4 2.1 35 67-101 6-42 (65)
92 2ysm_A Myeloid/lymphoid or mix 85.8 0.14 4.7E-06 30.2 -0.2 39 66-104 4-42 (111)
93 2ku3_A Bromodomain-containing 85.8 0.24 8.2E-06 27.0 0.8 50 65-114 12-65 (71)
94 2kgg_A Histone demethylase jar 85.7 0.13 4.5E-06 26.1 -0.2 43 71-113 4-52 (52)
95 1z2q_A LM5-1; membrane protein 85.7 0.76 2.6E-05 25.7 2.9 37 66-102 18-55 (84)
96 3u5n_A E3 ubiquitin-protein li 85.3 0.11 3.6E-06 34.2 -0.9 45 67-115 5-54 (207)
97 1joc_A EEA1, early endosomal a 84.5 0.46 1.6E-05 28.7 1.7 35 68-102 68-103 (125)
98 2ri7_A Nucleosome-remodeling f 84.1 0.14 5E-06 32.5 -0.7 47 67-114 6-58 (174)
99 2e6r_A Jumonji/ARID domain-con 84.0 0.081 2.8E-06 30.4 -1.7 49 66-114 13-65 (92)
100 3v43_A Histone acetyltransfera 83.6 0.23 8E-06 29.4 0.1 44 71-114 63-111 (112)
101 1vfy_A Phosphatidylinositol-3- 83.5 0.56 1.9E-05 25.5 1.7 32 70-101 12-44 (73)
102 2yql_A PHD finger protein 21A; 83.5 0.047 1.6E-06 28.3 -2.6 46 66-114 6-55 (56)
103 3t7l_A Zinc finger FYVE domain 83.3 0.58 2E-05 26.5 1.7 35 68-102 19-54 (90)
104 1fp0_A KAP-1 corepressor; PHD 83.2 0.24 8.1E-06 28.2 0.1 46 66-114 22-71 (88)
105 1wew_A DNA-binding family prot 83.2 0.21 7.3E-06 27.6 -0.2 46 68-114 15-71 (78)
106 2yw8_A RUN and FYVE domain-con 83.0 0.54 1.8E-05 26.2 1.5 36 67-102 17-53 (82)
107 1wfk_A Zinc finger, FYVE domai 83.0 0.65 2.2E-05 26.3 1.9 35 67-101 7-42 (88)
108 2l43_A N-teminal domain from h 82.5 0.26 8.9E-06 28.0 0.0 49 66-114 22-74 (88)
109 1x4u_A Zinc finger, FYVE domai 81.7 0.63 2.2E-05 26.0 1.5 35 67-101 12-47 (84)
110 2puy_A PHD finger protein 21A; 81.1 0.13 4.4E-06 26.9 -1.5 45 67-114 3-51 (60)
111 2xb1_A Pygopus homolog 2, B-ce 81.0 0.5 1.7E-05 27.6 0.9 45 70-114 4-60 (105)
112 1weo_A Cellulose synthase, cat 80.9 3.5 0.00012 23.4 4.3 49 68-116 15-68 (93)
113 3i2d_A E3 SUMO-protein ligase 80.7 1.4 4.8E-05 31.6 3.2 45 70-116 250-298 (371)
114 1wen_A Inhibitor of growth fam 80.6 0.6 2E-05 25.3 1.1 46 67-115 14-65 (71)
115 1xwh_A Autoimmune regulator; P 80.6 0.13 4.3E-06 27.6 -1.7 45 67-114 6-54 (66)
116 4fo9_A E3 SUMO-protein ligase 80.4 1.5 5E-05 31.4 3.3 45 70-116 216-264 (360)
117 1wem_A Death associated transc 80.4 1.3 4.3E-05 24.1 2.4 45 68-114 15-69 (76)
118 1dvp_A HRS, hepatocyte growth 80.1 0.6 2E-05 30.8 1.1 34 69-102 161-195 (220)
119 2o35_A Hypothetical protein DU 79.5 0.69 2.4E-05 26.8 1.1 12 93-104 42-53 (105)
120 3fyb_A Protein of unknown func 79.2 0.71 2.4E-05 26.7 1.1 12 93-104 41-52 (104)
121 3zyq_A Hepatocyte growth facto 78.6 1.1 3.7E-05 29.8 2.0 34 69-102 164-198 (226)
122 2ro1_A Transcription intermedi 78.6 0.3 1E-05 31.7 -0.7 44 69-115 2-49 (189)
123 3o70_A PHD finger protein 13; 78.1 0.15 5.1E-06 27.5 -1.9 46 67-114 17-66 (68)
124 2yt5_A Metal-response element- 76.5 0.8 2.7E-05 24.1 0.8 49 67-115 4-61 (66)
125 3mpx_A FYVE, rhogef and PH dom 76.1 0.54 1.8E-05 33.9 0.0 49 68-116 374-430 (434)
126 2lbm_A Transcriptional regulat 74.5 2.7 9.2E-05 26.0 2.9 46 66-114 60-116 (142)
127 2xjy_A Rhombotin-2; oncoprotei 73.6 2.8 9.5E-05 24.9 2.8 48 70-117 30-77 (131)
128 2dar_A PDZ and LIM domain prot 73.2 2.6 8.9E-05 23.4 2.4 13 90-102 70-82 (90)
129 3shb_A E3 ubiquitin-protein li 72.6 0.2 7E-06 27.7 -2.3 43 71-114 28-76 (77)
130 1m3v_A FLIN4, fusion of the LI 72.3 2.4 8.2E-05 25.0 2.3 48 70-117 33-80 (122)
131 1zbd_B Rabphilin-3A; G protein 71.9 1.3 4.3E-05 27.2 0.9 35 67-101 53-89 (134)
132 3ql9_A Transcriptional regulat 71.0 5 0.00017 24.4 3.4 47 66-115 54-111 (129)
133 2a20_A Regulating synaptic mem 70.0 0.21 7E-06 26.2 -2.5 49 66-114 6-59 (62)
134 2e6s_A E3 ubiquitin-protein li 69.5 0.39 1.3E-05 26.5 -1.6 45 69-114 26-76 (77)
135 3ask_A E3 ubiquitin-protein li 69.1 0.64 2.2E-05 31.1 -0.9 47 69-115 174-225 (226)
136 2d8v_A Zinc finger FYVE domain 68.9 1.9 6.5E-05 23.1 1.1 32 67-102 6-38 (67)
137 4gne_A Histone-lysine N-methyl 68.8 1.8 6.3E-05 25.4 1.1 31 66-100 12-45 (107)
138 1x64_A Alpha-actinin-2 associa 68.1 8.6 0.00029 21.1 3.9 10 71-80 27-36 (89)
139 3asl_A E3 ubiquitin-protein li 67.7 0.44 1.5E-05 25.8 -1.6 44 71-115 20-69 (70)
140 3mjh_B Early endosome antigen 67.6 1.6 5.5E-05 20.2 0.6 11 69-79 5-15 (34)
141 2cor_A Pinch protein; LIM doma 67.1 4.8 0.00016 21.7 2.6 29 70-101 42-70 (79)
142 1wd2_A Ariadne-1 protein homol 66.1 0.58 2E-05 24.5 -1.3 36 70-105 7-47 (60)
143 2zet_C Melanophilin; complex, 64.7 2.4 8.1E-05 26.5 1.1 33 67-99 66-100 (153)
144 2dj7_A Actin-binding LIM prote 63.5 4.4 0.00015 22.0 2.0 10 70-79 43-52 (80)
145 1x62_A C-terminal LIM domain p 62.9 3 0.0001 22.4 1.2 13 91-103 61-73 (79)
146 1wyh_A SLIM 2, skeletal muscle 62.0 4.8 0.00016 21.0 1.9 32 70-103 34-65 (72)
147 2jvx_A NF-kappa-B essential mo 61.0 2.1 7.3E-05 18.8 0.3 10 107-116 4-13 (28)
148 1nyp_A Pinch protein; LIM doma 60.9 4.1 0.00014 21.0 1.5 31 70-102 32-62 (66)
149 2d8z_A Four and A half LIM dom 60.8 5.5 0.00019 20.7 2.0 32 70-103 32-63 (70)
150 1wee_A PHD finger family prote 60.8 2.7 9.2E-05 22.5 0.8 46 68-114 15-65 (72)
151 2co8_A NEDD9 interacting prote 59.0 8.2 0.00028 20.9 2.6 11 70-80 16-26 (82)
152 3c6w_A P28ING5, inhibitor of g 58.4 0.41 1.4E-05 25.0 -2.8 44 68-114 8-57 (59)
153 3kqi_A GRC5, PHD finger protei 58.3 7.1 0.00024 21.0 2.2 43 72-114 12-60 (75)
154 2vnf_A ING 4, P29ING4, inhibit 58.3 0.77 2.6E-05 24.0 -1.7 44 68-114 9-58 (60)
155 1iml_A CRIP, cysteine rich int 57.2 2.2 7.4E-05 22.8 -0.0 42 70-115 28-70 (76)
156 2gmg_A Hypothetical protein PF 56.9 2.3 7.8E-05 24.9 0.0 26 85-115 68-93 (105)
157 2kwj_A Zinc finger protein DPF 56.6 0.32 1.1E-05 28.8 -3.8 44 71-114 60-107 (114)
158 1wev_A Riken cDNA 1110020M19; 56.3 3 0.0001 23.4 0.5 47 68-114 15-71 (88)
159 2d8x_A Protein pinch; LIM doma 56.3 4.3 0.00015 21.1 1.1 33 70-104 32-64 (70)
160 1x63_A Skeletal muscle LIM-pro 55.2 7.6 0.00026 20.8 2.0 32 70-103 44-75 (82)
161 1wig_A KIAA1808 protein; LIM d 55.2 5.4 0.00018 21.1 1.4 34 70-104 32-65 (73)
162 1rut_X Flinc4, fusion protein 54.6 4.7 0.00016 25.6 1.3 48 70-117 33-80 (188)
163 1x6a_A LIMK-2, LIM domain kina 53.2 5.6 0.00019 21.3 1.3 35 70-104 42-76 (81)
164 2cu8_A Cysteine-rich protein 2 53.0 5.5 0.00019 21.1 1.2 11 70-80 37-47 (76)
165 1x4l_A Skeletal muscle LIM-pro 51.9 11 0.00036 19.7 2.2 30 70-101 36-65 (72)
166 2l4z_A DNA endonuclease RBBP8, 51.0 23 0.0008 20.8 3.9 38 69-116 61-98 (123)
167 1g47_A Pinch protein; LIM doma 50.0 12 0.00042 19.6 2.3 30 70-101 40-69 (77)
168 2cuq_A Four and A half LIM dom 49.6 8.9 0.0003 20.4 1.7 32 70-103 42-73 (80)
169 2jmo_A Parkin; IBR, E3 ligase, 49.5 0.64 2.2E-05 25.7 -3.1 14 89-102 55-68 (80)
170 1x4k_A Skeletal muscle LIM-pro 49.5 6.8 0.00023 20.4 1.2 32 70-103 34-65 (72)
171 2cur_A Skeletal muscle LIM-pro 49.5 5.2 0.00018 20.7 0.7 33 70-104 32-64 (69)
172 4gut_A Lysine-specific histone 49.1 9.1 0.00031 30.0 2.2 38 70-107 14-58 (776)
173 1v6g_A Actin binding LIM prote 49.1 6.2 0.00021 21.2 1.0 8 72-79 18-25 (81)
174 3o7a_A PHD finger protein 13 v 49.0 0.84 2.9E-05 23.0 -2.5 40 74-114 8-51 (52)
175 2dlo_A Thyroid receptor-intera 48.5 6.6 0.00023 21.1 1.1 32 70-103 42-74 (81)
176 2pv0_B DNA (cytosine-5)-methyl 47.1 12 0.0004 27.0 2.4 15 89-103 112-126 (386)
177 1x3h_A Leupaxin; paxillin fami 45.6 7.8 0.00027 20.6 1.1 32 70-103 42-73 (80)
178 3kv5_D JMJC domain-containing 45.2 12 0.0004 27.8 2.2 46 68-114 36-87 (488)
179 2fiy_A Protein FDHE homolog; F 45.0 1.5 5E-05 30.7 -2.5 45 67-114 180-230 (309)
180 2xqn_T Testin, TESS; metal-bin 44.0 23 0.00078 20.6 3.1 44 70-117 31-74 (126)
181 2rgt_A Fusion of LIM/homeobox 43.9 29 0.001 21.4 3.7 42 70-116 34-75 (169)
182 1loi_A Cyclic 3',5'-AMP specif 43.1 1.3 4.5E-05 18.4 -1.8 11 93-103 6-16 (26)
183 3a1b_A DNA (cytosine-5)-methyl 43.1 14 0.00047 23.3 2.0 33 68-104 78-113 (159)
184 1x68_A FHL5 protein; four-and- 42.9 14 0.00047 19.5 1.8 11 70-80 36-46 (76)
185 2l3k_A Rhombotin-2, linker, LI 39.5 12 0.00039 22.0 1.2 34 70-104 37-70 (123)
186 2ehe_A Four and A half LIM dom 39.4 15 0.00052 19.6 1.6 10 70-79 44-53 (82)
187 1wfl_A Zinc finger protein 216 39.0 47 0.0016 18.0 3.6 26 69-96 25-50 (74)
188 2ct7_A Ring finger protein 31; 38.6 1.6 5.6E-05 24.3 -2.6 32 72-103 28-62 (86)
189 3vhs_A ATPase wrnip1; zinc fin 38.5 6.5 0.00022 16.8 -0.0 6 109-114 9-14 (29)
190 1a7i_A QCRP2 (LIM1); LIM domai 38.0 6.5 0.00022 21.1 -0.1 31 70-102 35-65 (81)
191 2iyb_E Testin, TESS, TES; LIM 36.0 12 0.00042 19.1 0.9 10 70-79 33-42 (65)
192 1zfo_A LAsp-1; LIM domain, zin 35.8 11 0.00037 16.5 0.5 27 70-98 4-30 (31)
193 2g6q_A Inhibitor of growth pro 35.3 1.7 5.8E-05 22.8 -2.7 44 68-114 10-59 (62)
194 2rsd_A E3 SUMO-protein ligase 35.1 5.5 0.00019 21.1 -0.7 45 68-114 9-64 (68)
195 2csz_A Synaptotagmin-like prot 34.5 13 0.00046 20.3 0.8 34 66-99 22-57 (76)
196 3f6q_B LIM and senescent cell 32.5 12 0.00043 19.1 0.5 10 71-80 13-22 (72)
197 1j2o_A FLIN2, fusion of rhombo 32.1 25 0.00086 20.1 1.9 36 70-106 31-67 (114)
198 1wfp_A Zinc finger (AN1-like) 31.9 64 0.0022 17.5 3.9 28 67-96 23-50 (74)
199 2jtn_A LIM domain-binding prot 31.9 26 0.0009 21.9 2.1 42 70-116 88-129 (182)
200 2d8y_A Eplin protein; LIM doma 30.3 32 0.0011 18.7 2.1 33 70-104 43-75 (91)
201 2egq_A FHL1 protein; LIM domai 30.3 23 0.00079 18.5 1.4 8 72-79 18-25 (77)
202 2kpi_A Uncharacterized protein 29.5 38 0.0013 17.1 2.1 15 67-81 8-22 (56)
203 3kv4_A PHD finger protein 8; e 29.1 8 0.00027 28.4 -0.8 44 71-114 6-55 (447)
204 2jrp_A Putative cytoplasmic pr 28.9 1.6 5.5E-05 24.4 -3.6 9 71-79 4-12 (81)
205 2ffw_A Midline-1; B-BOX, ring 28.3 74 0.0025 17.0 3.4 35 67-101 28-62 (78)
206 1l8d_A DNA double-strand break 26.2 17 0.00057 20.9 0.3 11 106-116 47-57 (112)
207 4ayb_P DNA-directed RNA polyme 25.6 3.5 0.00012 20.5 -2.3 9 108-116 25-33 (48)
208 2cup_A Skeletal muscle LIM-pro 25.4 37 0.0013 18.7 1.7 44 70-117 34-77 (101)
209 3c5k_A HD6, histone deacetylas 24.4 21 0.0007 20.8 0.5 25 69-96 24-48 (109)
210 1wvk_A AT2G23090/F21P24.15; st 24.4 17 0.00057 20.4 0.1 12 68-79 44-55 (86)
211 1x61_A Thyroid receptor intera 24.1 80 0.0027 16.0 3.6 34 70-105 34-67 (72)
212 1r79_A Diacylglycerol kinase, 23.9 50 0.0017 18.2 2.0 39 70-111 39-80 (84)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=97.62 Aligned_cols=51 Identities=33% Similarity=0.882 Sum_probs=46.2
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+..|+||++.+..+..++.++|+|.||..||..|++.+.+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 455789999999988777888999999999999999999999999999875
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.68 E-value=1.4e-17 Score=89.04 Aligned_cols=51 Identities=33% Similarity=0.924 Sum_probs=45.7
Q ss_pred CccccccccccccccCCCceeeC-CCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 35678999999998877788887 9999999999999999999999999874
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=90.96 Aligned_cols=51 Identities=31% Similarity=0.920 Sum_probs=45.3
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+..|+||++.+..+..++.++|+|.||..||.+|+..+.+||+||..+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 455789999999987667888999999999999999998899999999874
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=93.31 Aligned_cols=52 Identities=33% Similarity=0.856 Sum_probs=46.2
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+..+..++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 3456789999999988666788999999999999999998999999999875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-17 Score=91.79 Aligned_cols=51 Identities=31% Similarity=0.828 Sum_probs=45.2
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+..|+||++.+........++|+|.||..||.+|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 345789999999988777778899999999999999998889999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=7.1e-17 Score=92.15 Aligned_cols=51 Identities=37% Similarity=0.964 Sum_probs=45.1
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+..|+||++.|........++|+|.||..||.+|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 456789999999987666778899999999999999998899999999874
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.63 E-value=1.3e-16 Score=85.15 Aligned_cols=52 Identities=25% Similarity=0.738 Sum_probs=44.1
Q ss_pred CccccccccccccccC-CCceeeCCCChhhHHHHHHHhhCCCcccccCcccCC
Q 033497 67 ATEGRCTVCMENFLQA-FPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVIA 118 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 118 (118)
..+..|+||++.+..+ ..++.++|+|.||..||.+|++.+.+||+||+.+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3457899999998653 346778899999999999999988999999998864
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=88.89 Aligned_cols=52 Identities=25% Similarity=0.673 Sum_probs=41.5
Q ss_pred cCcccccccccccccc-----------CCCceeeC-CCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQ-----------AFPGKQVP-CGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~-----------~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.|.. ++.++.++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3456778888888854 33355554 9999999999999999999999999864
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=87.46 Aligned_cols=52 Identities=27% Similarity=0.694 Sum_probs=43.8
Q ss_pred cCccccccccccccccC----CCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQA----FPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+... ..++.++|||.||..||.+|+..+..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34567899999998762 22378899999999999999998899999999874
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.61 E-value=2.8e-16 Score=87.97 Aligned_cols=52 Identities=27% Similarity=0.694 Sum_probs=44.0
Q ss_pred cCccccccccccccccC----CCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQA----FPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+... ..++.++|||.||..||.+|++.+.+||+||..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 34567899999998762 33478899999999999999998899999999764
No 11
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.61 E-value=2.9e-16 Score=98.78 Aligned_cols=47 Identities=32% Similarity=0.911 Sum_probs=43.1
Q ss_pred ccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
++..|+||++.+.. ++.++|||.||..||..|+..+.+||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999987 899999999999999999999999999999874
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-16 Score=87.77 Aligned_cols=49 Identities=27% Similarity=0.688 Sum_probs=43.6
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..||..|+..+..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3456789999999887 888999999999999999998899999999763
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=85.33 Aligned_cols=49 Identities=27% Similarity=0.623 Sum_probs=42.4
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhh---CCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS---LSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~---~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..||..|+. ....||+||..+.
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4456889999999987 88889999999999999996 4557999999864
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=85.73 Aligned_cols=48 Identities=27% Similarity=0.610 Sum_probs=42.5
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.+ +|||.||..||..|++.+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 456889999999987 7766 89999999999999998889999998764
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=86.98 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=42.9
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.....|+||++.+.. ++.++|||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345789999999987 888999999999999999998889999998763
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.57 E-value=8.2e-16 Score=84.31 Aligned_cols=50 Identities=28% Similarity=0.711 Sum_probs=42.6
Q ss_pred ccccccccccccccC----CCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 68 TEGRCTVCMENFLQA----FPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
++..|+||++.+... ..++.++|||.||..|+.+|+..+.+||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 456899999998762 33478899999999999999998899999999864
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=83.28 Aligned_cols=49 Identities=27% Similarity=0.677 Sum_probs=42.1
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhh-CCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS-LSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..||.+|+. .+..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3456889999999987 77789999999999999994 5668999999864
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=85.57 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=42.5
Q ss_pred cCccccccccccccccCCCceeeC-CCChhhHHHHHHHhhCC--CcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLS--NSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++ |||.||..||..|+..+ ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456889999999987 88899 99999999999999755 68999999754
No 19
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.56 E-value=2e-15 Score=91.89 Aligned_cols=50 Identities=32% Similarity=0.666 Sum_probs=39.6
Q ss_pred ccccccccccccccCC---------------CceeeCCCChhhHHHHHHHh-----hCCCcccccCcccC
Q 033497 68 TEGRCTVCMENFLQAF---------------PGKQVPCGHVFHATCISTWI-----SLSNSCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~---------------~~~~~~C~H~f~~~Ci~~~~-----~~~~~CP~Cr~~~~ 117 (118)
.+..|+||++.|.... ....++|+|.||..||..|+ ..+.+||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3468999999986532 22367899999999999999 45668999998763
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=3.7e-15 Score=89.77 Aligned_cols=51 Identities=24% Similarity=0.598 Sum_probs=42.6
Q ss_pred cCccccccccccccccC---------------CCceeeCCCChhhHHHHHHHhhCCCcccccCccc
Q 033497 66 AATEGRCTVCMENFLQA---------------FPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~---------------~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 116 (118)
..++..|+||++.|... ..++.++|+|.||..||.+|+..+.+||+||+.+
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 34678899999998753 1245678999999999999999999999999875
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.2e-15 Score=80.26 Aligned_cols=44 Identities=27% Similarity=0.651 Sum_probs=38.7
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhh---CCCccccc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS---LSNSCPVC 112 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~---~~~~CP~C 112 (118)
..++..|+||++.+.. ++.++|||.||..||.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4566889999999987 88889999999999999997 45589998
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.55 E-value=1.7e-15 Score=84.19 Aligned_cols=49 Identities=33% Similarity=0.842 Sum_probs=42.0
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+..|+||++.+.. .++.++|||.||..|+.+|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 345689999999865 2477899999999999999998899999998764
No 23
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=7.4e-15 Score=84.63 Aligned_cols=49 Identities=29% Similarity=0.628 Sum_probs=42.5
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC------CCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL------SNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..||..|+.. ...||.||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3456789999999987 788999999999999999976 667999998764
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5e-15 Score=86.04 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=43.2
Q ss_pred cCccccccccccccccCCC-ceeeCCCChhhHHHHHHHhhCC---CcccccCccc
Q 033497 66 AATEGRCTVCMENFLQAFP-GKQVPCGHVFHATCISTWISLS---NSCPVCRSGV 116 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~~~~~~---~~CP~Cr~~~ 116 (118)
..+...|+||++.+..... ++.++|||.||..||..|+..+ ..||+||..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 3456789999999987554 7788999999999999999865 6899999875
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.54 E-value=4.2e-15 Score=84.71 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=43.4
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC-CCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL-SNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~ 117 (118)
..++..|+||++.|.+ ++.++|||.||..||.+|+.. +.+||+||..+.
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3467889999999988 889999999999999999986 778999998763
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.54 E-value=1.9e-15 Score=90.19 Aligned_cols=48 Identities=29% Similarity=0.742 Sum_probs=42.5
Q ss_pred CccccccccccccccCCCcee-eCCCChhhHHHHHHHhhCC-CcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQ-VPCGHVFHATCISTWISLS-NSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++. ++|||.||..||..|+... ..||.||..+.
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 456889999999987 887 8999999999999999877 68999998763
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-15 Score=84.25 Aligned_cols=47 Identities=32% Similarity=0.889 Sum_probs=41.5
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. +.++|+|.||..||.+|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 456789999999765 78899999999999999998899999998764
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.6e-15 Score=84.36 Aligned_cols=49 Identities=33% Similarity=0.719 Sum_probs=42.5
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC------CCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL------SNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..|+..|+.. ...||.||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3456789999999987 788899999999999999976 678999998764
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.51 E-value=3e-15 Score=85.38 Aligned_cols=49 Identities=29% Similarity=0.636 Sum_probs=42.3
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC-------CCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL-------SNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-------~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..||..|+.. ...||+||..+.
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3456889999999987 778899999999999999976 567999998764
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=8.6e-15 Score=90.37 Aligned_cols=48 Identities=23% Similarity=0.493 Sum_probs=42.2
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCC-cccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSN-SCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.++|||.||..||..|+..+. .||+||..+.
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 456889999999987 88899999999999999997544 8999999874
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.50 E-value=8.2e-15 Score=87.11 Aligned_cols=48 Identities=29% Similarity=0.704 Sum_probs=42.5
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.+ +|||.||..||..|+..+..||.||..+.
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 356889999999987 7777 89999999999999998889999998764
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=84.83 Aligned_cols=48 Identities=27% Similarity=0.671 Sum_probs=41.9
Q ss_pred cCccccccccccccccCCCceeeC-CCChhhHHHHHHHhhCC--CcccccCccc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLS--NSCPVCRSGV 116 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~ 116 (118)
..++..|+||++.|.. ++.++ |||.||..||..|+... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3466889999999987 89999 99999999999999643 5899999986
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.49 E-value=1.6e-14 Score=87.12 Aligned_cols=48 Identities=29% Similarity=0.700 Sum_probs=43.1
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.+ +|||.||..||..|+.....||.||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 456889999999987 7877 99999999999999998899999998764
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-14 Score=76.42 Aligned_cols=44 Identities=36% Similarity=0.918 Sum_probs=37.5
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhh---CCCccccc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS---LSNSCPVC 112 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~---~~~~CP~C 112 (118)
..++..|+||++.+.. ++.++|||.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999987 78889999999999999954 55679998
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.47 E-value=2.1e-14 Score=89.03 Aligned_cols=51 Identities=27% Similarity=0.705 Sum_probs=43.7
Q ss_pred CccccccccccccccC----CCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQA----FPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~----~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+... ..++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4567899999999762 23388999999999999999999999999999764
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=2.8e-15 Score=91.60 Aligned_cols=52 Identities=23% Similarity=0.550 Sum_probs=2.7
Q ss_pred ccCccccccccccccccC--------------C-CceeeCCCChhhHHHHHHHhhCCCcccccCccc
Q 033497 65 VAATEGRCTVCMENFLQA--------------F-PGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116 (118)
Q Consensus 65 ~~~~~~~C~IC~~~~~~~--------------~-~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 116 (118)
.+..+..|+||++.|... + .+..++|+|.||..||.+|++.+.+||+||+.+
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ECCCC--------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 345668899999998641 1 123457999999999999999999999999874
No 37
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-14 Score=81.78 Aligned_cols=52 Identities=27% Similarity=0.701 Sum_probs=42.0
Q ss_pred ccCccccccccccccccCCCceeeCCC-----ChhhHHHHHHHhhCC--CcccccCcccC
Q 033497 65 VAATEGRCTVCMENFLQAFPGKQVPCG-----HVFHATCISTWISLS--NSCPVCRSGVI 117 (118)
Q Consensus 65 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~ 117 (118)
...++..|.||++.+..++. .++||+ |.||..||.+|+..+ .+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34556789999999876554 568896 999999999999754 48999998764
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.45 E-value=1e-13 Score=82.35 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred cCccccccccccccccCCCceeeCCC-ChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCG-HVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+++.|+||++.|.+ ++.++|| |.||..||.+|+..+.+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 3567899999999999 9999999 99999999999988889999998764
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=4.2e-14 Score=77.86 Aligned_cols=50 Identities=18% Similarity=0.524 Sum_probs=39.4
Q ss_pred cccccccccc-ccccCCCc-eeeCCCChhhHHHHHHHhhC-CCcccccCcccC
Q 033497 68 TEGRCTVCME-NFLQAFPG-KQVPCGHVFHATCISTWISL-SNSCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~-~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~ 117 (118)
++..|+||++ .+...... +.++|||.||..||.+|+.. ...||+||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4578999999 77663322 46789999999999999754 457999998764
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.43 E-value=1.4e-14 Score=88.23 Aligned_cols=48 Identities=31% Similarity=0.787 Sum_probs=42.2
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC-CCcccccCccc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL-SNSCPVCRSGV 116 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~ 116 (118)
..++..|+||++.+.. ++.++|||.||..||..|+.. ...||+||..+
T Consensus 12 ~~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 3456889999999987 888999999999999999975 66899999876
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.43 E-value=8.7e-14 Score=89.70 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=41.9
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhC-CCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISL-SNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.+ +|||.||..||..|+.. ...||+||..+.
T Consensus 52 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 456789999999987 7776 89999999999999986 678999998763
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.43 E-value=5.8e-14 Score=89.39 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=41.8
Q ss_pred ccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCC-cccccCcccC
Q 033497 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSN-SCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~ 117 (118)
+...|+||++.+.. ++.++|||.||..||..|+.... .||+||..+.
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 45789999999988 88899999999999999998654 8999999764
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.43 E-value=1.2e-13 Score=80.02 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=44.5
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+++.|+||++.|.+ ++.++|||.|+..||.+|+..+.+||+||.++.
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 3467899999999999 999999999999999999998889999998764
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.42 E-value=7.3e-14 Score=85.52 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=43.3
Q ss_pred ccCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCC-cccccCcccC
Q 033497 65 VAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSN-SCPVCRSGVI 117 (118)
Q Consensus 65 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~ 117 (118)
...++..|+||++.+.. ++.++|||.||..||..|+.... .||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 34567899999999987 88899999999999999997655 8999998764
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=5.5e-14 Score=85.06 Aligned_cols=47 Identities=21% Similarity=0.687 Sum_probs=40.8
Q ss_pred ccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCC---cccccCcccC
Q 033497 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSN---SCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~---~CP~Cr~~~~ 117 (118)
+...|+||++.+.. ++.++|||.||..||..|+..+. .||+||..+.
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45789999999877 77889999999999999997654 7999998764
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.41 E-value=2.9e-13 Score=80.65 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=44.8
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+++.|+||++.|.+ ++.++|||.||..||.+|+..+.+||+||.++.
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3567899999999999 999999999999999999998889999998764
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.41 E-value=5.4e-14 Score=85.80 Aligned_cols=49 Identities=22% Similarity=0.588 Sum_probs=42.9
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC-CCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL-SNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+.. ++.++|||.||..||..|+.. ...||+||..+.
T Consensus 20 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 20 FVKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred ccCCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 3456889999999987 888999999999999999986 678999998764
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.41 E-value=6.3e-14 Score=88.39 Aligned_cols=49 Identities=20% Similarity=0.501 Sum_probs=42.7
Q ss_pred ccCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCC-cccccCccc
Q 033497 65 VAATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSN-SCPVCRSGV 116 (118)
Q Consensus 65 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~ 116 (118)
...++..|+||++.+.. ++.++|||.||..||.+|+.... .||.||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34577899999999988 88899999999999999997554 899999864
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.40 E-value=2.6e-13 Score=77.41 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=39.6
Q ss_pred cCccccccccccccccCCCceee--CCCChhhHHHHHHHhh-CCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQV--PCGHVFHATCISTWIS-LSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~ 117 (118)
..++..|+||++.+...+ +..+ +|||.||..|+..++. ....||.||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 456788999999886432 3344 4999999999999984 4567999999763
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.37 E-value=1.8e-13 Score=75.23 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=41.2
Q ss_pred ccccccccccccccCCCceee--CCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 68 TEGRCTVCMENFLQAFPGKQV--PCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~--~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
++..|.||++...+ ++.+ ||||. ||..|+..|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45679999999877 7766 99999 899999999988889999999764
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.36 E-value=2.3e-13 Score=84.31 Aligned_cols=52 Identities=27% Similarity=0.703 Sum_probs=43.9
Q ss_pred cCcccccccccccccc----CCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQ----AFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~----~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+...|+||++.+.. ...++.++|||.||..||.+|++.+++||+||..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4566889999999876 122378899999999999999999999999999764
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.34 E-value=4e-13 Score=73.64 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=41.2
Q ss_pred CccccccccccccccCCCceee--CCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV--PCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~--~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..+..|.||++...+ +..+ ||||. ||..|+..|.+....||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345679999998766 6666 99998 999999999988889999999864
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=1.9e-13 Score=73.25 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=38.8
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.++|||.||..|+.. ....||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 456789999999987 88999999999999977 3568999998764
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.32 E-value=7.6e-13 Score=95.10 Aligned_cols=46 Identities=33% Similarity=0.842 Sum_probs=41.6
Q ss_pred cccccccccccccCCCceeeCCCChhhHHHHHHHhh-CCCcccccCcccC
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS-LSNSCPVCRSGVI 117 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~ 117 (118)
...|+||++.+.. ++.++|||.||..|+..|+. ....||+||..+.
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 3689999999877 89999999999999999998 7789999999764
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.32 E-value=3.3e-13 Score=76.19 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=39.2
Q ss_pred CccccccccccccccCCCceeeCCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+.
T Consensus 22 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 345789999999887 899999999 999999998 88999999764
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=2.5e-13 Score=83.04 Aligned_cols=46 Identities=28% Similarity=0.668 Sum_probs=40.8
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.+ +|||.||..||..|+. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 456889999999987 8888 8999999999999987 78999998763
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=72.65 Aligned_cols=49 Identities=20% Similarity=0.532 Sum_probs=39.4
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCC--CcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS--NSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~ 117 (118)
.....|.||.+.+..+. ....|+|.||..||.+|++.+ .+||+||..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34577999999997632 223799999999999999877 78999998753
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.23 E-value=4.1e-12 Score=82.17 Aligned_cols=49 Identities=29% Similarity=0.652 Sum_probs=42.8
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCC-CcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS-NSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~ 117 (118)
..+++.|+||++.+.. ++.++|||.||..||.+|+... ..||.||..+.
T Consensus 15 ~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 15 LESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 4567899999999988 8889999999999999999754 48999998764
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.20 E-value=6.5e-12 Score=86.45 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC-CCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL-SNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~ 117 (118)
......|+||++.|.+ |++++|||.||..||..|+.. ..+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3467899999999998 999999999999999999975 445999998764
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-12 Score=73.55 Aligned_cols=44 Identities=30% Similarity=0.754 Sum_probs=37.5
Q ss_pred CccccccccccccccCCCceeeCCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.++|||. ||..|+..+ ..||+||.++.
T Consensus 23 ~~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 67 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 67 (75)
T ss_dssp HHHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCC
T ss_pred CCCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC----CCCccCCceec
Confidence 345789999999877 888999999 999999643 78999998764
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.1e-12 Score=74.07 Aligned_cols=46 Identities=22% Similarity=0.503 Sum_probs=39.9
Q ss_pred CccccccccccccccCCCceeeC-CCChhhHHHHHHHhhCC------Ccccc--cCcc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLS------NSCPV--CRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~------~~CP~--Cr~~ 115 (118)
..++.|+||++.|.+ ++.++ |||.||..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456889999999998 99996 99999999999999753 47999 9754
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=67.82 Aligned_cols=45 Identities=27% Similarity=0.656 Sum_probs=38.3
Q ss_pred cCccccccccccccccCCCceeeCCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|.||++.... ++.+||||. ||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 3456789999999877 999999999 99999984 478999999874
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.14 E-value=2.6e-11 Score=78.99 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=43.1
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCC-CcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS-NSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~ 117 (118)
....+.|+||++.|.+ |++++|||.|+..||..|+... .+||+||.++.
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CcHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3567899999999998 9999999999999999999753 47999998764
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.12 E-value=8.4e-12 Score=71.26 Aligned_cols=43 Identities=40% Similarity=0.828 Sum_probs=37.7
Q ss_pred ccccccccccccccCCCceeeCCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 68 TEGRCTVCMENFLQAFPGKQVPCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
++..|.||++.+.. ++.+||||. ||..|+..| ..||+||..+.
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 45689999999887 899999999 999999877 49999999764
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.01 E-value=7.1e-10 Score=75.81 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=40.9
Q ss_pred cCccccccccccccccCCCceee-CCCChhhHHHHHHHhhCC--Ccccc--cCccc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISLS--NSCPV--CRSGV 116 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~--~~CP~--Cr~~~ 116 (118)
...+..|+||++.|.. ++.. .|||.||..||..|+..+ ..||. ||+.+
T Consensus 178 ~~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 178 GKIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp SBCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred CceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 3566899999999988 8875 899999999999999754 46999 99865
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.1e-10 Score=68.46 Aligned_cols=48 Identities=21% Similarity=0.619 Sum_probs=36.7
Q ss_pred ccccccccccccccCCCceeeCCCChhhHHHHHHHhhC--------CCcccc--cCcc
Q 033497 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL--------SNSCPV--CRSG 115 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--------~~~CP~--Cr~~ 115 (118)
+...|+||++.+.......+.+|||.||..||..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999999876332233479999999999999852 236999 9887
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.96 E-value=7.7e-11 Score=83.89 Aligned_cols=44 Identities=32% Similarity=0.830 Sum_probs=39.3
Q ss_pred CccccccccccccccCCCceeeCCCCh-hhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHV-FHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.++..|+||++.+.. ++.+||||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 356889999999988 999999999 999999988 78999999864
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.95 E-value=9.1e-11 Score=82.86 Aligned_cols=51 Identities=25% Similarity=0.627 Sum_probs=38.6
Q ss_pred Ccccccccccccccc-CCCce----eeCCCChhhHHHHHHHhhCC-----------CcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQ-AFPGK----QVPCGHVFHATCISTWISLS-----------NSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~-~~~~~----~~~C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~ 117 (118)
.....|+||++.+.. +..+. ...|+|.||..||.+|++.. .+||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345679999999876 32222 23699999999999999632 35999999874
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.95 E-value=5.3e-10 Score=60.43 Aligned_cols=48 Identities=23% Similarity=0.581 Sum_probs=37.1
Q ss_pred CccccccccccccccCCCceeeCC--CC---hhhHHHHHHHhh--CCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPC--GH---VFHATCISTWIS--LSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C--~H---~f~~~Ci~~~~~--~~~~CP~Cr~~~~ 117 (118)
.++..|.||++.... ..++|| .+ .||..||.+|+. .+.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~---~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN---ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC---CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC---ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999987433 446785 45 899999999996 4678999998764
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.86 E-value=7.8e-10 Score=59.99 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=40.8
Q ss_pred ccccccccccccCCCceee-CCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 70 GRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
+.|+|+++.+.+ ++.. ++||.|.+.||.+|++.+.+||+.+.++.
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 579999999998 8888 89999999999999988788999998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.65 E-value=1.5e-08 Score=59.40 Aligned_cols=45 Identities=29% Similarity=0.554 Sum_probs=36.3
Q ss_pred cccccccccccCCCceeeCCCChhhHHHHHHHhh-CCCcccccCcccC
Q 033497 71 RCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS-LSNSCPVCRSGVI 117 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~~CP~Cr~~~~ 117 (118)
-|++|--++.. ..+.+||+|.||.+|+..|.+ ..+.||.|+.++.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 37788666544 567899999999999999975 5678999998874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.12 E-value=1.9e-06 Score=58.47 Aligned_cols=45 Identities=24% Similarity=0.704 Sum_probs=36.7
Q ss_pred cccccccccccccCCCceeeC-CCChhhHHHHHHHhhCCC--cccccCccc
Q 033497 69 EGRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWISLSN--SCPVCRSGV 116 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~--~CP~Cr~~~ 116 (118)
...|.||.+.... ....+ |+|.||..|+.+|++.+. .||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4779999999876 34443 999999999999997654 799998764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.48 E-value=0.00017 Score=41.60 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=37.4
Q ss_pred CccccccccccccccCCCceeeCC-CChhhHHHHHHHhhCCCcccccCcccC
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPC-GHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C-~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
.+-..|..|+-. . ..++.| .|-+|..|+..++.....||+|+.+++
T Consensus 26 ~G~~nCKsCWf~--~---k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFE--N---KGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSC--C---SSEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccc--c---CCeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 455889999844 3 345566 699999999999999999999999876
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.82 E-value=0.00052 Score=40.08 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=25.2
Q ss_pred cccccccccccc-ccCCCcee--eCCCChhhHHHHHHH
Q 033497 68 TEGRCTVCMENF-LQAFPGKQ--VPCGHVFHATCISTW 102 (118)
Q Consensus 68 ~~~~C~IC~~~~-~~~~~~~~--~~C~H~f~~~Ci~~~ 102 (118)
++..|+||.+.+ .. ++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB---CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC---ceEECCcCChHHhHHHCHHH
Confidence 457899999763 33 444 889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.22 E-value=0.012 Score=31.81 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=30.7
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhCCC----cccccCcc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSN----SCPVCRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~----~CP~Cr~~ 115 (118)
..+..|.||.+. ++.+.--.|...||..|+...+.... .||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999753 22222234999999999987764322 59999753
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.17 E-value=0.028 Score=31.76 Aligned_cols=33 Identities=27% Similarity=0.702 Sum_probs=23.4
Q ss_pred cCccccccccccccccCCCceeeC---CCChhhHHHHHHH
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVP---CGHVFHATCISTW 102 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~---C~H~f~~~Ci~~~ 102 (118)
...+..|.||- .+.. -.++| |+..||..|+.+.
T Consensus 12 ~~~D~~C~VC~-~~t~---~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTA---ESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTC-CCCS---SCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccc-cccc---cceeccccccccccHhhcccc
Confidence 34678899994 2222 23333 8899999999997
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.95 E-value=0.0059 Score=32.66 Aligned_cols=48 Identities=23% Similarity=0.520 Sum_probs=32.1
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhh-----CCCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWIS-----LSNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~-----~~~~CP~Cr~ 114 (118)
.++..|+||...+..+...+.- .|...||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 4567799998877543333333 4899999999864322 2345999964
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.12 E-value=0.087 Score=42.12 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=43.0
Q ss_pred cCccccccccccccccCCCceeeCCC-ChhhHHHHHHHhhCCCcccccCcccC
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCG-HVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..++..|||=++.+.+ |++++-| +.|-+..|.+|+..+.+||+=|.++.
T Consensus 888 iP~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 4567899999999999 9999987 68999999999998889999877653
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.67 E-value=0.044 Score=27.73 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=27.3
Q ss_pred cccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCcc
Q 033497 71 RCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRSG 115 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 115 (118)
.|.||...-..+..+.--.|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888765322222222348999999999753322 1249999653
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.21 E-value=0.018 Score=31.70 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=31.0
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhC----CCcccccCcc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISL----SNSCPVCRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 115 (118)
.+...|.||..... +...+.. .|...||..|+..-... .-.||.|+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 34567999987643 2223332 48999999999764432 2359999654
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.81 E-value=0.072 Score=28.12 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=29.1
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
..+..|.+|... ++.+.--.|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445779999863 211222248899999999874321 224999965
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=90.22 E-value=0.062 Score=34.84 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=32.1
Q ss_pred ccccccccccccCCC---ceee-CCCChhhHHHHHHHh------h-----CCCcccccCcc
Q 033497 70 GRCTVCMENFLQAFP---GKQV-PCGHVFHATCISTWI------S-----LSNSCPVCRSG 115 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~---~~~~-~C~H~f~~~Ci~~~~------~-----~~~~CP~Cr~~ 115 (118)
..|+||...+..++. .+.. .|...||..|..--- . ....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999988877542 3333 499999999984321 1 14679999865
No 83
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.01 E-value=0.41 Score=27.41 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=27.4
Q ss_pred CccccccccccccccCCCceeeC--CC-ChhhHHHHHHHhh--CCCcccccCcc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVP--CG-HVFHATCISTWIS--LSNSCPVCRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~--C~-H~f~~~Ci~~~~~--~~~~CP~Cr~~ 115 (118)
.+...| ||..... +..+.--. |. ..||..|+.--.. .+-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 344667 9987643 32222233 55 6899999972111 22359999754
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.49 E-value=0.2 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCceee-CCCChhhHHHHHHHhh-----CCCcccccCcc
Q 033497 68 TEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWIS-----LSNSCPVCRSG 115 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~-----~~~~CP~Cr~~ 115 (118)
+...| ||......+..++.. .|...||..|+.--.. ....||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 34556 898776433334433 4999999999853221 34469999754
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.45 E-value=0.047 Score=28.85 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=30.8
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCccc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRSGV 116 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~ 116 (118)
...+..|.+|.+. ++.+.--.|...||..|+..-+.. .-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456779999753 222333358899999999754322 22499997653
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=88.63 E-value=0.061 Score=34.64 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=29.7
Q ss_pred ccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCcc
Q 033497 68 TEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRSG 115 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 115 (118)
++..|.+|... ++....-.|...||..|+.+-+.. .-.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 45679999754 332222348999999998765432 2259999764
No 87
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=88.03 E-value=0.13 Score=27.11 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=28.7
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCccccc
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVC 112 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~C 112 (118)
..|-.|+..+.......-..|++.||.+|=.-.-..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999888541111123499999999965433455579988
No 88
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.93 E-value=0.087 Score=30.56 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=27.3
Q ss_pred cccccccccccccCCCceeeCCCChhhHHHHHHHhh---CCCcccccCc
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS---LSNSCPVCRS 114 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~---~~~~CP~Cr~ 114 (118)
...| ||......+..+.--.|...||..|+..-.. ....||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 8866544322122224999999999865322 1235999974
No 89
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.79 E-value=0.39 Score=26.83 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=27.2
Q ss_pred CccccccccccccccCCCceeeC--CCChhhHHHHHHHhh
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVP--CGHVFHATCISTWIS 104 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~--C~H~f~~~Ci~~~~~ 104 (118)
.....|.+|.+.+.... -+..| =.|.||.-|-+..++
T Consensus 13 ~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHH
Confidence 34577999999987633 23333 369999999999885
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=87.29 E-value=0.04 Score=33.31 Aligned_cols=46 Identities=24% Similarity=0.471 Sum_probs=28.2
Q ss_pred CccccccccccccccCCCcee-eCCCChhhHHHHHHHhhCCCccccc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQ-VPCGHVFHATCISTWISLSNSCPVC 112 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~~CP~C 112 (118)
.....|..|...|..-.+... -.||.+||..|........+.|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 344679999999876322333 3599999999976655555566666
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.61 E-value=0.44 Score=25.43 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=24.2
Q ss_pred CccccccccccccccCCCceee--CCCChhhHHHHHH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV--PCGHVFHATCIST 101 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~ 101 (118)
.....|++|...+..+...+.. .|...||..|+.-
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 3456799999987665444443 5999999999743
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.82 E-value=0.14 Score=30.20 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=25.6
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
..++..|.||.+.=...+.+.-..|+..||..|+.....
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 346778999976632211122335999999999987654
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.79 E-value=0.24 Score=26.97 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=30.7
Q ss_pred ccCccccccccccccc-cCCCceee-CCCChhhHHHHHHHhhCC--CcccccCc
Q 033497 65 VAATEGRCTVCMENFL-QAFPGKQV-PCGHVFHATCISTWISLS--NSCPVCRS 114 (118)
Q Consensus 65 ~~~~~~~C~IC~~~~~-~~~~~~~~-~C~H~f~~~Ci~~~~~~~--~~CP~Cr~ 114 (118)
...++..|.||...-. .++..+.- .|.-.||..|+..-.... -.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3456778999986631 12223332 489999999997533222 24888854
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=85.73 E-value=0.13 Score=26.13 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=27.1
Q ss_pred cccccccccccCCCceee--CCCChhhHHHHHHHh----hCCCcccccC
Q 033497 71 RCTVCMENFLQAFPGKQV--PCGHVFHATCISTWI----SLSNSCPVCR 113 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~~~----~~~~~CP~Cr 113 (118)
.|.+|...+..+...+.- .|...||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477887776544334433 488899999975322 2455688885
No 95
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=85.66 E-value=0.76 Score=25.67 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=26.7
Q ss_pred cCccccccccccccccCCCceee-CCCChhhHHHHHHH
Q 033497 66 AATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTW 102 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~ 102 (118)
+.+...|.+|...|..-.+...- .||.+||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34456799999999764333333 49999999997654
No 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.31 E-value=0.11 Score=34.19 Aligned_cols=45 Identities=29% Similarity=0.500 Sum_probs=29.5
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHhhC----CCcccccCcc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISL----SNSCPVCRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 115 (118)
..+..|.+|... ++ .... .|...||..|+.+-+.. .-.||.|+..
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 355679999754 21 2222 48999999999765432 2259999763
No 97
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=84.51 E-value=0.46 Score=28.71 Aligned_cols=35 Identities=23% Similarity=0.566 Sum_probs=25.7
Q ss_pred ccccccccccccccCCCceee-CCCChhhHHHHHHH
Q 033497 68 TEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTW 102 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~ 102 (118)
+...|.+|...|......... .||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 346799999998764333344 49999999997654
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=84.05 E-value=0.14 Score=32.46 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=29.5
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHHh-----hCCCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWI-----SLSNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~-----~~~~~CP~Cr~ 114 (118)
.+...| +|......+...+.. .|..+||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 455678 998775433323333 489999999985321 12346999964
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.96 E-value=0.081 Score=30.37 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=28.9
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
..++..|.||...-..+..+.--.|...||..|+.+-+.. .-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3455679999876432111222248889999998743321 114888854
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.55 E-value=0.23 Score=29.35 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=26.7
Q ss_pred cccccccccccCCCceee-CCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 71 RCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
.|.||...-..+.....- .|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887542222223322 49999999999754432 125999975
No 101
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.55 E-value=0.56 Score=25.48 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=23.6
Q ss_pred ccccccccccccCCCceee-CCCChhhHHHHHH
Q 033497 70 GRCTVCMENFLQAFPGKQV-PCGHVFHATCIST 101 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~ 101 (118)
..|.+|...|..-.....- .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999998763333333 4999999999754
No 102
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.49 E-value=0.047 Score=28.28 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=28.8
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
...+..|.+|... +..+.--.|...||..|+.+-+.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456779999864 222223358999999999754322 114888853
No 103
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=83.32 E-value=0.58 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=25.5
Q ss_pred ccccccccccccccCCCceee-CCCChhhHHHHHHH
Q 033497 68 TEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTW 102 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~ 102 (118)
+...|.+|...|..-...... .||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346799999998764333333 49999999997654
No 104
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.23 E-value=0.24 Score=28.23 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=30.2
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhhCC----CcccccCc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLS----NSCPVCRS 114 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~ 114 (118)
...+..|.+|... ++...--.|...||..|+.+=+... -.||.|+.
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 4566789999864 2212223488999999997654321 14999964
No 105
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.19 E-value=0.21 Score=27.58 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=28.2
Q ss_pred ccccccccccccccCCCceee--CCCChhhHHHHHHHhh---------CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQV--PCGHVFHATCISTWIS---------LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~~~~---------~~~~CP~Cr~ 114 (118)
+...| ||......+..+.-- .|...||..|+.--.. .+..||.|+.
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 44667 888763333222223 5889999999854322 2346999964
No 106
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.04 E-value=0.54 Score=26.16 Aligned_cols=36 Identities=28% Similarity=0.589 Sum_probs=25.7
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHHH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTW 102 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~ 102 (118)
.+...|.+|...|........- .||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3446799999999763333333 49999999997643
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.96 E-value=0.65 Score=26.26 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=24.5
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCIST 101 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~ 101 (118)
.+...|.+|...|..-...... .||.+||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3445799999998763333333 4999999999754
No 108
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.54 E-value=0.26 Score=27.96 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=29.6
Q ss_pred cCcccccccccccccc-CCCceee-CCCChhhHHHHHHHhhC--CCcccccCc
Q 033497 66 AATEGRCTVCMENFLQ-AFPGKQV-PCGHVFHATCISTWISL--SNSCPVCRS 114 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~-~~~~~~~-~C~H~f~~~Ci~~~~~~--~~~CP~Cr~ 114 (118)
..++..|.||...-.. .+..+.. .|.-.||..|+..-... .-.||.|..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 3456789999865311 1112222 48889999999753322 224888854
No 109
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.66 E-value=0.63 Score=25.98 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=25.0
Q ss_pred CccccccccccccccCCCceee-CCCChhhHHHHHH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV-PCGHVFHATCIST 101 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~ 101 (118)
.+...|.+|...|..-.+...- .||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3446799999998764333333 4999999999754
No 110
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.11 E-value=0.13 Score=26.93 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=28.3
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
..+..|.+|... +..+.--.|...||..|+.+-+.. .-.||.|+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 456779999764 222223348899999998753321 124888854
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=80.97 E-value=0.5 Score=27.65 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=30.5
Q ss_pred ccccccccccccCCCceee--CCCChhhHHHHHHHhh----------CCCcccccCc
Q 033497 70 GRCTVCMENFLQAFPGKQV--PCGHVFHATCISTWIS----------LSNSCPVCRS 114 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~~~~----------~~~~CP~Cr~ 114 (118)
..|.||...+..+...+.. .|...||..|+.--.. ....||.|+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 5699999887654444444 5899999999853210 2335999964
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.92 E-value=3.5 Score=23.43 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=33.1
Q ss_pred ccccccccccccccC---CCcee-eCCCChhhHHHHHHHh-hCCCcccccCccc
Q 033497 68 TEGRCTVCMENFLQA---FPGKQ-VPCGHVFHATCISTWI-SLSNSCPVCRSGV 116 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~---~~~~~-~~C~H~f~~~Ci~~~~-~~~~~CP~Cr~~~ 116 (118)
....|.||-+.+-.. +.-+. --|+--.|..|+.--. ..+..||.|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 446799999886432 21122 2388889999987654 4667899997654
No 113
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.69 E-value=1.4 Score=31.59 Aligned_cols=45 Identities=24% Similarity=0.522 Sum_probs=29.6
Q ss_pred ccccccccccccCCCceeeCCCCh--hhHHHHHHHhhCC--CcccccCccc
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHV--FHATCISTWISLS--NSCPVCRSGV 116 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~--f~~~Ci~~~~~~~--~~CP~Cr~~~ 116 (118)
+.|+|=...+.. .++...|.|. |-..-+..+.... -.||+|.+.+
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 779988777765 2345569998 5554454444333 3599998765
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=80.61 E-value=0.6 Score=25.34 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=26.3
Q ss_pred CccccccccccccccCCCcee-eC--CC-ChhhHHHHHHHhh--CCCcccccCcc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQ-VP--CG-HVFHATCISTWIS--LSNSCPVCRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~-~~--C~-H~f~~~Ci~~~~~--~~~~CP~Cr~~ 115 (118)
.+...| ||..... +. ++. -. |. ..||..|+.--.. .+-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 344567 8977532 22 222 23 55 6899999972111 22259999754
No 115
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.60 E-value=0.13 Score=27.58 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=28.6
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
.++..|.||.+. ++.+.--.|...||..|+.+-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 222222348899999999753321 124888854
No 116
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.40 E-value=1.5 Score=31.36 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=30.2
Q ss_pred ccccccccccccCCCceeeCCCCh--hhHHHHHHHhhCCC--cccccCccc
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHV--FHATCISTWISLSN--SCPVCRSGV 116 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~--f~~~Ci~~~~~~~~--~CP~Cr~~~ 116 (118)
+.|+|=...+.. ..+...|.|. |-..-+..+..... .||+|.+.+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 679988777765 2344569999 66555555544333 599998865
No 117
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.39 E-value=1.3 Score=24.15 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=28.5
Q ss_pred ccccccccccccccCCCcee-eCCCChhhHHHHHHHh---------hCCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQ-VPCGHVFHATCISTWI---------SLSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~---------~~~~~CP~Cr~ 114 (118)
+...| ||......+ .++. -.|...||..|+.--. .....||.|+.
T Consensus 15 ~~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 34567 898775432 2333 3499999999985321 24557999964
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=80.08 E-value=0.6 Score=30.80 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=25.5
Q ss_pred cccccccccccccCCCceee-CCCChhhHHHHHHH
Q 033497 69 EGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTW 102 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~ 102 (118)
+..|.+|...|..-.+.... .||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999998764444444 49999999997653
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=79.47 E-value=0.69 Score=26.83 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=10.6
Q ss_pred hhhHHHHHHHhh
Q 033497 93 VFHATCISTWIS 104 (118)
Q Consensus 93 ~f~~~Ci~~~~~ 104 (118)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999984
No 120
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=79.21 E-value=0.71 Score=26.73 Aligned_cols=12 Identities=25% Similarity=0.938 Sum_probs=10.6
Q ss_pred hhhHHHHHHHhh
Q 033497 93 VFHATCISTWIS 104 (118)
Q Consensus 93 ~f~~~Ci~~~~~ 104 (118)
.||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 121
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=78.63 E-value=1.1 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.594 Sum_probs=25.4
Q ss_pred cccccccccccccCCCceee-CCCChhhHHHHHHH
Q 033497 69 EGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTW 102 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~ 102 (118)
+..|.+|...|..-.+.... .||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999998864333443 49999999997654
No 122
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.58 E-value=0.3 Score=31.66 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=28.5
Q ss_pred cccccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCcc
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRSG 115 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 115 (118)
+..|.+|.+. ++......|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3569999754 332333458899999999754322 1249999753
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=78.11 E-value=0.15 Score=27.54 Aligned_cols=46 Identities=26% Similarity=0.478 Sum_probs=28.4
Q ss_pred CccccccccccccccCCCcee-eCCCChhhHHHHHHHhh---CCCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQ-VPCGHVFHATCISTWIS---LSNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~---~~~~CP~Cr~ 114 (118)
.+...| ||..... +...+. -.|...||..|+.--.. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344667 9977654 222333 24899999999864322 2335998864
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.52 E-value=0.8 Score=24.15 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=30.5
Q ss_pred CccccccccccccccC-CCceee-CCCChhhHHHHHHHhh-------CCCcccccCcc
Q 033497 67 ATEGRCTVCMENFLQA-FPGKQV-PCGHVFHATCISTWIS-------LSNSCPVCRSG 115 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~-~~~~~~-~C~H~f~~~Ci~~~~~-------~~~~CP~Cr~~ 115 (118)
.++..|.||....... ...+.- .|...||..|+..-+. ..-.|+.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567899998764321 222332 4999999999875321 22248888654
No 125
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=76.14 E-value=0.54 Score=33.86 Aligned_cols=49 Identities=16% Similarity=0.386 Sum_probs=0.0
Q ss_pred ccccccccccccccCCCce-eeCCCChhhHHHHHHHhh-------CCCcccccCccc
Q 033497 68 TEGRCTVCMENFLQAFPGK-QVPCGHVFHATCISTWIS-------LSNSCPVCRSGV 116 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~-~~~C~H~f~~~Ci~~~~~-------~~~~CP~Cr~~~ 116 (118)
....|.+|...|..-.+.. .-.||+.||..|...... ..+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3467999999887532222 335999999999976541 234587775443
No 126
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.48 E-value=2.7 Score=25.98 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=30.4
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHhh-----------CCCcccccCc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS-----------LSNSCPVCRS 114 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-----------~~~~CP~Cr~ 114 (118)
+..+..|.+|.+. ++..---.|...||..||.+-+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4456789999755 22122235899999999997652 1225999974
No 127
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=73.56 E-value=2.8 Score=24.87 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=28.1
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
+.|..|-..+..........=+..||..|..+.+.....|..|..+|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 667777766642111233334566777777766544446777776553
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.19 E-value=2.6 Score=23.37 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=6.4
Q ss_pred CCChhhHHHHHHH
Q 033497 90 CGHVFHATCISTW 102 (118)
Q Consensus 90 C~H~f~~~Ci~~~ 102 (118)
=+..||..|..+.
T Consensus 70 ~g~~yC~~cy~~~ 82 (90)
T 2dar_A 70 KGALYCELCYEKF 82 (90)
T ss_dssp SSCEECHHHHHHH
T ss_pred CCEEECHHHHHHH
Confidence 3445555555443
No 129
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=72.64 E-value=0.2 Score=27.74 Aligned_cols=43 Identities=26% Similarity=0.524 Sum_probs=24.5
Q ss_pred cccccccccccCCCcee-eCCCChhhHHHHHHHhhC----C-CcccccCc
Q 033497 71 RCTVCMENFLQAFPGKQ-VPCGHVFHATCISTWISL----S-NSCPVCRS 114 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~----~-~~CP~Cr~ 114 (118)
.|.||...-..+ .... -.|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665443221 1122 148899999999865431 1 25888875
No 130
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=72.26 E-value=2.4 Score=25.03 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=33.1
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
+.|..|-..+..........=+..||..|..+.+..+..|..|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 778888877752101223345677999999887766558999988765
No 131
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.90 E-value=1.3 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.6
Q ss_pred Cccccccccccccc-cCCCce-eeCCCChhhHHHHHH
Q 033497 67 ATEGRCTVCMENFL-QAFPGK-QVPCGHVFHATCIST 101 (118)
Q Consensus 67 ~~~~~C~IC~~~~~-~~~~~~-~~~C~H~f~~~Ci~~ 101 (118)
..+..|.+|...|. ...... ...|.|.+|..|-..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 35678999999983 323233 345999999999654
No 132
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.98 E-value=5 Score=24.36 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=29.1
Q ss_pred cCccccccccccccccCCCceeeCCCChhhHHHHHHHh------h-----CCCcccccCcc
Q 033497 66 AATEGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI------S-----LSNSCPVCRSG 115 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~------~-----~~~~CP~Cr~~ 115 (118)
+..+..|.+|.+.= +..---.|-..||..||.+-+ + ..=.|++|+..
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34556699997541 111122488999999999752 1 11259999653
No 133
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=70.02 E-value=0.21 Score=26.22 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=29.9
Q ss_pred cCccccccccccc-cccCCCceeeCCCChhhHHHHHHHhh-CCC---cccccCc
Q 033497 66 AATEGRCTVCMEN-FLQAFPGKQVPCGHVFHATCISTWIS-LSN---SCPVCRS 114 (118)
Q Consensus 66 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~-~~~---~CP~Cr~ 114 (118)
..+...|.||+.. |.++.--.-.-|.-.||..|-.+|-. .++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3455789999865 33332223334888888888777643 333 3777764
No 134
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.52 E-value=0.39 Score=26.54 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=27.2
Q ss_pred cccccccccccccCCCcee-eCCCChhhHHHHHHHhhC-----CCcccccCc
Q 033497 69 EGRCTVCMENFLQAFPGKQ-VPCGHVFHATCISTWISL-----SNSCPVCRS 114 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~-----~~~CP~Cr~ 114 (118)
+-.|.||...-..+ ..+. -.|...||..|+.+-+.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34688887542221 1222 248999999999853321 225898864
No 135
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.06 E-value=0.64 Score=31.06 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=25.3
Q ss_pred cccccccccccccCCCceeeCCCChhhHHHHHHHhh--CC---CcccccCcc
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS--LS---NSCPVCRSG 115 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~--~~---~~CP~Cr~~ 115 (118)
+..|.+|...-..+.....-.|...||..|+.+=+. .. =.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 346888876422222222224999999999985442 12 249999753
No 136
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=68.89 E-value=1.9 Score=23.06 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=24.0
Q ss_pred CccccccccccccccCCCceeeCC-CChhhHHHHHHH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPC-GHVFHATCISTW 102 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C-~H~f~~~Ci~~~ 102 (118)
.+..-|-||.+. .. .+.+.| +-.||..|+.+.
T Consensus 6 ee~pWC~ICneD-At---lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-AT---LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CC---EEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC-Ce---EEecCCCCceehHHHHHHH
Confidence 344569999877 33 566778 789999998776
No 137
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=68.84 E-value=1.8 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=21.0
Q ss_pred cCccccccccccccccCCCceee---CCCChhhHHHHH
Q 033497 66 AATEGRCTVCMENFLQAFPGKQV---PCGHVFHATCIS 100 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~ 100 (118)
..++..|.+|.+. ++ .+.- .|...||..|+.
T Consensus 12 ~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 12 QMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc
Confidence 4566779999842 21 3332 377899999987
No 138
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=68.10 E-value=8.6 Score=21.08 Aligned_cols=10 Identities=20% Similarity=0.634 Sum_probs=5.0
Q ss_pred cccccccccc
Q 033497 71 RCTVCMENFL 80 (118)
Q Consensus 71 ~C~IC~~~~~ 80 (118)
.|..|-..+.
T Consensus 27 ~C~~C~~~I~ 36 (89)
T 1x64_A 27 LCDKCGSGIV 36 (89)
T ss_dssp BCTTTCCBCC
T ss_pred CcccCCCEec
Confidence 4555555443
No 139
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=67.69 E-value=0.44 Score=25.78 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=25.2
Q ss_pred cccccccccccCCCceee-CCCChhhHHHHHHHhhC-----CCcccccCcc
Q 033497 71 RCTVCMENFLQAFPGKQV-PCGHVFHATCISTWISL-----SNSCPVCRSG 115 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-----~~~CP~Cr~~ 115 (118)
.|.||...-..+ ..+.- .|...||..|+.+=+.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 456776432221 12222 48899999999854321 2259998753
No 140
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=67.65 E-value=1.6 Score=20.17 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 033497 69 EGRCTVCMENF 79 (118)
Q Consensus 69 ~~~C~IC~~~~ 79 (118)
...||||+..+
T Consensus 5 GFiCP~C~~~l 15 (34)
T 3mjh_B 5 GFICPQCMKSL 15 (34)
T ss_dssp EEECTTTCCEE
T ss_pred ccCCcHHHHHc
Confidence 35566665443
No 141
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.14 E-value=4.8 Score=21.71 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=15.0
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHH
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~ 101 (118)
+.|..|...+... .. ..=+..||..|..+
T Consensus 42 F~C~~C~~~L~~~--~f-~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 42 FNCANCGKELTAD--AR-ELKGELYCLPCHDK 70 (79)
T ss_dssp SBCSSSCCBCCTT--CE-EETTEEECHHHHHT
T ss_pred CEeCCCCCccCCC--CE-eECCEEeCHHHHHH
Confidence 5666666665532 11 22455566666543
No 142
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.12 E-value=0.58 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=24.0
Q ss_pred ccccccccccccCC---CceeeC--CCChhhHHHHHHHhhC
Q 033497 70 GRCTVCMENFLQAF---PGKQVP--CGHVFHATCISTWISL 105 (118)
Q Consensus 70 ~~C~IC~~~~~~~~---~~~~~~--C~H~f~~~Ci~~~~~~ 105 (118)
..||-|...+.... .+.-.. |++.||..|..+|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46888876654422 233333 8999999999998653
No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.66 E-value=2.4 Score=26.54 Aligned_cols=33 Identities=15% Similarity=0.445 Sum_probs=24.1
Q ss_pred Ccccccccccccccc--CCCceeeCCCChhhHHHH
Q 033497 67 ATEGRCTVCMENFLQ--AFPGKQVPCGHVFHATCI 99 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~--~~~~~~~~C~H~f~~~Ci 99 (118)
..+..|.+|...|.- +.......|.|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357889999998743 222334459999999997
No 144
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.50 E-value=4.4 Score=21.96 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.6
Q ss_pred cccccccccc
Q 033497 70 GRCTVCMENF 79 (118)
Q Consensus 70 ~~C~IC~~~~ 79 (118)
+.|..|...+
T Consensus 43 F~C~~C~~~L 52 (80)
T 2dj7_A 43 FKCQTCSVIL 52 (80)
T ss_dssp CBCSSSCCBC
T ss_pred CCcCcCCCCc
Confidence 4444444443
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.93 E-value=3 Score=22.44 Aligned_cols=13 Identities=0% Similarity=0.192 Sum_probs=6.5
Q ss_pred CChhhHHHHHHHh
Q 033497 91 GHVFHATCISTWI 103 (118)
Q Consensus 91 ~H~f~~~Ci~~~~ 103 (118)
+..||..|..+.+
T Consensus 61 g~~yC~~cy~~~~ 73 (79)
T 1x62_A 61 DQIYCEKHARERV 73 (79)
T ss_dssp SCEECHHHHHHHH
T ss_pred CEEECHHHHHHHh
Confidence 4445555554444
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.00 E-value=4.8 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=17.8
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~ 103 (118)
..|..|...+... .....=+..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 34 FLCSGCEQPLGSR--SFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CBCTTTCCBTTTS--CEEEETTEEEEHHHHHHHT
T ss_pred CeECCCCCcCCCC--ccCCcCCeEECHHHHHHHc
Confidence 6677776665542 2223345567777765543
No 147
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.99 E-value=2.1 Score=18.84 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=6.2
Q ss_pred CcccccCccc
Q 033497 107 NSCPVCRSGV 116 (118)
Q Consensus 107 ~~CP~Cr~~~ 116 (118)
..||+|+..+
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 4577776644
No 148
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=60.94 E-value=4.1 Score=20.95 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=14.9
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHH
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTW 102 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~ 102 (118)
..|..|...+... .....=+..||..|..+.
T Consensus 32 F~C~~C~~~L~~~--~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 32 FVCAKCEKPFLGH--RHYERKGLAYCETHYNQL 62 (66)
T ss_dssp CBCTTTCCBCSSS--CCEEETTEEECHHHHHHH
T ss_pred CEECCCCCCCCCC--ceEeECCcEECHHHHHHH
Confidence 5566665555431 122224455666665443
No 149
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.84 E-value=5.5 Score=20.67 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=19.9
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~ 103 (118)
+.|..|...+... .....=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 32 FVCTACRKQLSGQ--RFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp SBCSSSCCBCTTS--CCEESSSSEECHHHHHHHT
T ss_pred CccCCCCCcCCcC--ceEeeCCeEECHHHHHHHh
Confidence 6778887776432 2233346678888876654
No 150
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.75 E-value=2.7 Score=22.54 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=28.4
Q ss_pred ccccccccccccccCCCceee-CCCChhhHHHHHHHh----hCCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWI----SLSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~----~~~~~CP~Cr~ 114 (118)
+...| ||......+...+.. .|...||..|+.--. .....||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 44668 787765433333333 488999999986432 12335999964
No 151
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.99 E-value=8.2 Score=20.88 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=5.6
Q ss_pred ccccccccccc
Q 033497 70 GRCTVCMENFL 80 (118)
Q Consensus 70 ~~C~IC~~~~~ 80 (118)
..|..|-..+.
T Consensus 16 ~~C~~C~~~I~ 26 (82)
T 2co8_A 16 DLCALCGEHLY 26 (82)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCcccCCCcc
Confidence 34555555543
No 152
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=58.40 E-value=0.41 Score=25.02 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=24.7
Q ss_pred ccccccccccccccCCCcee-eC--CC-ChhhHHHHHHHhh--CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQ-VP--CG-HVFHATCISTWIS--LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~-~~--C~-H~f~~~Ci~~~~~--~~~~CP~Cr~ 114 (118)
+..-| ||..... +. ++. -. |. ..||..|+.--.. .+-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34556 8977532 21 222 23 55 6899999972111 2235998864
No 153
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=58.30 E-value=7.1 Score=21.02 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=26.5
Q ss_pred ccccccccccCCCceee-CCCChhhHHHHHHHhh-----CCCcccccCc
Q 033497 72 CTVCMENFLQAFPGKQV-PCGHVFHATCISTWIS-----LSNSCPVCRS 114 (118)
Q Consensus 72 C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~-----~~~~CP~Cr~ 114 (118)
--||...+..+..++.- .|.-.||..|+.--.. ....||.|+.
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 33887665433333333 4899999999954322 2345998864
No 154
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=58.25 E-value=0.77 Score=23.97 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=24.0
Q ss_pred ccccccccccccccCCCcee-eC--CC-ChhhHHHHHHHhh--CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQ-VP--CG-HVFHATCISTWIS--LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~-~~--C~-H~f~~~Ci~~~~~--~~~~CP~Cr~ 114 (118)
+...| ||..... +. ++. -. |. ..||..|+.--.. ..-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34456 8977532 21 222 13 54 6899999972111 2225998854
No 155
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=57.19 E-value=2.2 Score=22.80 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=26.4
Q ss_pred ccccccccccccCCCceeeCCCChhhH-HHHHHHhhCCCcccccCcc
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHA-TCISTWISLSNSCPVCRSG 115 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~-~Ci~~~~~~~~~CP~Cr~~ 115 (118)
+.|..|...+... .....=+..||. .|..+. ....|..|...
T Consensus 28 F~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 28 LKCEKCGKTLTSG--GHAEHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTCCBCCTT--TEEEETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCccccCccCCCC--ceECcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 7788888777653 223335667888 587654 33557777544
No 156
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.86 E-value=2.3 Score=24.92 Aligned_cols=26 Identities=35% Similarity=0.822 Sum_probs=16.2
Q ss_pred ceeeCCCChhhHHHHHHHhhCCCcccccCcc
Q 033497 85 GKQVPCGHVFHATCISTWISLSNSCPVCRSG 115 (118)
Q Consensus 85 ~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~ 115 (118)
+....||+.|. .-+.....||.|+..
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 44556999881 112344579999874
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=56.62 E-value=0.32 Score=28.84 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=25.0
Q ss_pred cccccccccccCCCceeeCCCChhhHHHHHHHhhC----CCcccccCc
Q 033497 71 RCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL----SNSCPVCRS 114 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~ 114 (118)
.|.||...-..+..+.--.|...||..|+.+=+.. .-.||.|+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 57777664322211122248899999998753322 113888754
No 158
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.33 E-value=3 Score=23.42 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=29.1
Q ss_pred ccccccccccccccC-CCceee-CCCChhhHHHHHHHhh--------CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQA-FPGKQV-PCGHVFHATCISTWIS--------LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~-~~~~~~-~C~H~f~~~Ci~~~~~--------~~~~CP~Cr~ 114 (118)
.+..|.+|...-... +..+.. .|...||..|+..-+. ..-.|+.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 456799998763321 223332 4899999999876432 1224888854
No 159
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.30 E-value=4.3 Score=21.12 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=20.5
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
+.|..|...+... .....=+..||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~--~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 32 FRCDLCQEVLADI--GFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SBCSSSCCBCSSS--CCEEETTEEECHHHHHHHHC
T ss_pred CEeCCCCCcCCCC--ccEeECCeEECHHHhhhhcC
Confidence 6777777766553 22233566788888776654
No 160
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.18 E-value=7.6 Score=20.81 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=16.0
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~ 103 (118)
+.|..|...+... .....=+..||..|..+.+
T Consensus 44 F~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 75 (82)
T 1x63_A 44 FTCSNCKQVIGTG--SFFPKGEDFYCVTCHETKF 75 (82)
T ss_dssp CCCSSSCCCCTTS--CEEEETTEEEEHHHHHHHT
T ss_pred CchhhCCCccCCC--ccEeeCCEEECHHHHHHHh
Confidence 5566665555432 1222244556666665544
No 161
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.17 E-value=5.4 Score=21.12 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=20.4
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
+.|..|...+..+. .....=+..||..|......
T Consensus 32 F~C~~C~~~L~~~~-~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 32 ALCVRCGQMFAEGE-EMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSSSCCCCCSSC-CCEEETTEEECTTHHHHTSS
T ss_pred CEeCCCCCCCCCCC-eeEeeCCEEEChHHChHhhc
Confidence 67888877776322 22223455678888766543
No 162
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=54.64 E-value=4.7 Score=25.62 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=27.6
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
+.|..|...+..........=+..||..|..+.+..+..|..|..+|.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 667777666543001222334566788887765544336777776653
No 163
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.18 E-value=5.6 Score=21.34 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=21.4
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
..|..|...+..+....+..=+..||..|..+.+.
T Consensus 42 F~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 42 FACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred CCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 67788877765432222124567788888877654
No 164
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.99 E-value=5.5 Score=21.11 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=6.4
Q ss_pred ccccccccccc
Q 033497 70 GRCTVCMENFL 80 (118)
Q Consensus 70 ~~C~IC~~~~~ 80 (118)
..|..|...+.
T Consensus 37 F~C~~C~~~L~ 47 (76)
T 2cu8_A 37 LKCERCSKTLT 47 (76)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCCCCCCccC
Confidence 55666655554
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.86 E-value=11 Score=19.65 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=16.2
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHH
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~ 101 (118)
+.|..|...+.. ......=+..||..|..+
T Consensus 36 F~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 36 FNCKKCSLSLVG--RGFLTERDDILCPDCGKD 65 (72)
T ss_dssp CBCSSSCCBCTT--SCCEECSSSEECHHHHHT
T ss_pred CEeccCCCcCCC--CccEeECCEEEChhHcCc
Confidence 666677666543 122223455677776644
No 166
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.96 E-value=23 Score=20.80 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=22.7
Q ss_pred cccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCccc
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 116 (118)
...|.-|-..+... .++..-+..||..| ..|-.|+..|
T Consensus 61 ~~~C~~C~~~I~~~--~~v~a~~~~wH~~C--------F~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADR--FLLYAMDSYWHSRC--------LKCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSS--SEEEETTEEEETTT--------SBCTTTCCBG
T ss_pred CCcCcCCCCCcCCc--EEEEeCCcEEcccc--------cCcCcCCCcc
Confidence 46788888776641 22333566677766 4566665554
No 167
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.04 E-value=12 Score=19.62 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=12.9
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHH
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~ 101 (118)
..|..|...+..+. ....=+..||..|..+
T Consensus 40 F~C~~C~~~L~~~~--~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 40 FVCAQCFQQFPEGL--FYEFEGRKYCEHDFQM 69 (77)
T ss_dssp CCCTTTCCCCGGGC--SEEETTEEECHHHHHH
T ss_pred CeECCCCCCCCCCC--eEeECCeEeCHHHHHH
Confidence 44555555544321 1122334455555543
No 168
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.62 E-value=8.9 Score=20.40 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=19.6
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~ 103 (118)
+.|..|...+... .....=+..||..|..+.+
T Consensus 42 F~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 42 LVCTGCQTPLAGQ--QFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp CBCSSSCCBCTTC--CEEECSSSEEEHHHHHHHT
T ss_pred CCcccCCCcCCCC--eeEeECCEEECHHHHHHHc
Confidence 6777777776431 2333456678888876654
No 169
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.53 E-value=0.64 Score=25.73 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=12.6
Q ss_pred CCCChhhHHHHHHH
Q 033497 89 PCGHVFHATCISTW 102 (118)
Q Consensus 89 ~C~H~f~~~Ci~~~ 102 (118)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998887
No 170
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.48 E-value=6.8 Score=20.38 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=17.8
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~ 103 (118)
+.|..|...+... .....=+..||..|..+.+
T Consensus 34 F~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 34 FICHRCQQPIGTK--SFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TCCSSSCCCCCSS--SEEEETTEEEEHHHHHHHT
T ss_pred CcccccCCccCCC--ccCccCCeEECHHHHhHHh
Confidence 6677776665542 2222345567777765543
No 171
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.46 E-value=5.2 Score=20.74 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=20.9
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
+.|..|...+... .....=+..||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 32 FVCVTCSKKLAGQ--RFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TBCTTTCCBCTTS--CEEECSSCEEEHHHHHHHHT
T ss_pred CEECCCCCCCCCC--ccEeECCEEECHHHhHHHhc
Confidence 6778887776531 23334467788888876654
No 172
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=49.11 E-value=9.1 Score=30.00 Aligned_cols=38 Identities=18% Similarity=0.501 Sum_probs=28.2
Q ss_pred cccccccccccc-------CCCceeeCCCChhhHHHHHHHhhCCC
Q 033497 70 GRCTVCMENFLQ-------AFPGKQVPCGHVFHATCISTWISLSN 107 (118)
Q Consensus 70 ~~C~IC~~~~~~-------~~~~~~~~C~H~f~~~Ci~~~~~~~~ 107 (118)
..|++|+-...+ ...-..++|+-+||..|...+++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~~ 58 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHK 58 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTTS
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccCc
Confidence 568899877654 12245788999999999998876643
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.06 E-value=6.2 Score=21.19 Aligned_cols=8 Identities=25% Similarity=0.683 Sum_probs=3.4
Q ss_pred cccccccc
Q 033497 72 CTVCMENF 79 (118)
Q Consensus 72 C~IC~~~~ 79 (118)
|..|-..+
T Consensus 18 C~~C~~~I 25 (81)
T 1v6g_A 18 CFSCDQFI 25 (81)
T ss_dssp CTTTCCBC
T ss_pred CccccCEe
Confidence 44444433
No 174
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=49.04 E-value=0.84 Score=22.99 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=23.1
Q ss_pred ccccccccCCCcee-eCCCChhhHHHHHHHhh---CCCcccccCc
Q 033497 74 VCMENFLQAFPGKQ-VPCGHVFHATCISTWIS---LSNSCPVCRS 114 (118)
Q Consensus 74 IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~---~~~~CP~Cr~ 114 (118)
||..... +...+. -.|...||..|+.--.. ....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5655433 222333 24888999999864322 3345888864
No 175
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.49 E-value=6.6 Score=21.07 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=18.5
Q ss_pred ccccccccccccCCCceeeC-CCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVP-CGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~ 103 (118)
+.|..|...+... ..... =+..||..|..+.+
T Consensus 42 F~C~~C~~~L~~~--~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 42 FTCVVCHRGLDGI--PFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp CBCSSSCCBCTTS--CEECCTTCCCEEHHHHHHHT
T ss_pred cCcccCCCccCCC--eeEECCCCEEECHHHHHHHh
Confidence 6777887766531 12222 35667888776543
No 176
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=47.13 E-value=12 Score=27.02 Aligned_cols=15 Identities=13% Similarity=0.682 Sum_probs=13.7
Q ss_pred CCCChhhHHHHHHHh
Q 033497 89 PCGHVFHATCISTWI 103 (118)
Q Consensus 89 ~C~H~f~~~Ci~~~~ 103 (118)
.|...||..||..++
T Consensus 112 ~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 112 DCTRCYCFECVDSLV 126 (386)
T ss_dssp TCCCEECHHHHHHHT
T ss_pred CCCcchHHHHHHHhc
Confidence 588999999999988
No 177
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.63 E-value=7.8 Score=20.65 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=18.2
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWI 103 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~ 103 (118)
+.|..|...+... .....=+..||..|..+.+
T Consensus 42 F~C~~C~~~L~~~--~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 42 FVCGDCFTSFSTG--SFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp CBCSSSCCBSCSS--CCEESSSCEECHHHHHHHH
T ss_pred CChhhCCCCCCCC--cEEeECCEEECHHHHHHHc
Confidence 6677777666542 1222345667777765543
No 178
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.22 E-value=12 Score=27.85 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=28.6
Q ss_pred ccccccccccccccCCCceee-CCCChhhHHHHHHHhh-----CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQV-PCGHVFHATCISTWIS-----LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~-----~~~~CP~Cr~ 114 (118)
+...| ||......+..++.. .|.-.||..|+.--.. ....||.|+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 33445 998775433334433 4999999999854322 1235999964
No 179
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.01 E-value=1.5 Score=30.67 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=30.3
Q ss_pred CccccccccccccccCCCceee----CCC--ChhhHHHHHHHhhCCCcccccCc
Q 033497 67 ATEGRCTVCMENFLQAFPGKQV----PCG--HVFHATCISTWISLSNSCPVCRS 114 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~----~C~--H~f~~~Ci~~~~~~~~~CP~Cr~ 114 (118)
+....||+|-..... .++. .=| +.+|.-|-..|-..+..||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~---s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMA---GMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEE---EEEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCce---eEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 556789999776543 1111 112 56777888889777788999954
No 180
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.01 E-value=23 Score=20.57 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=28.5
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
..|..|...+.. ......=|..||..|..+. ....|..|..+|.
T Consensus 31 F~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 31 FCCFDCDSILAG--EIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp SBCTTTCCBCTT--SEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCcCCCCCCCCc--CEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 678888777654 1233345667888887654 3456888877764
No 181
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.91 E-value=29 Score=21.38 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=24.5
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCccc
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 116 (118)
+.|..|...+... ....=|..||..|..+.+ ...|..|...|
T Consensus 34 F~C~~C~~~L~~~---~f~~~g~~yC~~~y~~~f--~~~C~~C~~~I 75 (169)
T 2rgt_A 34 LKCSDCHVPLAER---CFSRGESVYCKDDFFKRF--GTKCAACQLGI 75 (169)
T ss_dssp SBCTTTCCBCCSC---CEESSSCEECHHHHHHHH--SCBCTTTCCBC
T ss_pred CccCCCCCcCCCC---CcccCCeeeecccccccc--ccccccccccc
Confidence 6677777766542 123346667777776543 24566665544
No 182
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=43.15 E-value=1.3 Score=18.44 Aligned_cols=11 Identities=36% Similarity=1.066 Sum_probs=8.5
Q ss_pred hhhHHHHHHHh
Q 033497 93 VFHATCISTWI 103 (118)
Q Consensus 93 ~f~~~Ci~~~~ 103 (118)
.||..|-++|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 48888888876
No 183
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=43.11 E-value=14 Score=23.27 Aligned_cols=33 Identities=18% Similarity=0.477 Sum_probs=21.7
Q ss_pred ccccccccccccccCCCceee---CCCChhhHHHHHHHhh
Q 033497 68 TEGRCTVCMENFLQAFPGKQV---PCGHVFHATCISTWIS 104 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~~~~~ 104 (118)
.+..|.||-+.- ..+.. .|...||..||..++.
T Consensus 78 ~~~yC~wC~~Gg----~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 78 YQSYCTICCGGR----EVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SBSSCTTTSCCS----EEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CcceeeEecCCC----eEEeeCCCCCCCchhHHHHHHhcC
Confidence 345677776431 12222 3888999999999874
No 184
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.92 E-value=14 Score=19.49 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=5.5
Q ss_pred ccccccccccc
Q 033497 70 GRCTVCMENFL 80 (118)
Q Consensus 70 ~~C~IC~~~~~ 80 (118)
..|..|...+.
T Consensus 36 F~C~~C~~~L~ 46 (76)
T 1x68_A 36 FNCGKCSVSLV 46 (76)
T ss_dssp CBCTTTCCBCS
T ss_pred CChhhCCCcCC
Confidence 45555554443
No 185
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=39.50 E-value=12 Score=22.00 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=20.8
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
+.|..|-..+..+. .....=+..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~-~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGD-RYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTC-EEEECSSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCC-cEEeeCCEEEcHHHhHHHhc
Confidence 67788877764322 22333466788888777653
No 186
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.42 E-value=15 Score=19.56 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=4.6
Q ss_pred cccccccccc
Q 033497 70 GRCTVCMENF 79 (118)
Q Consensus 70 ~~C~IC~~~~ 79 (118)
+.|..|...+
T Consensus 44 F~C~~C~~~L 53 (82)
T 2ehe_A 44 FRCCRCQRSL 53 (82)
T ss_dssp SBCTTTCCBC
T ss_pred CeecCCCCcc
Confidence 4444554444
No 187
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=39.05 E-value=47 Score=18.01 Aligned_cols=26 Identities=27% Similarity=0.690 Sum_probs=17.8
Q ss_pred cccccccccccccCCCceeeCCCChhhH
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHA 96 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~ 96 (118)
..+|..|...+.. ......|+..||.
T Consensus 25 ~nRC~~CrKkvgL--~gf~CrCg~~FCs 50 (74)
T 1wfl_A 25 KNRCFMCRKKVGL--TGFDCRCGNLFCG 50 (74)
T ss_dssp TTBCSSSCCBCGG--GCEECTTSCEECS
T ss_pred CCcChhhCCcccc--cCeecCCCCEech
Confidence 4679999776433 1355569988886
No 188
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.58 E-value=1.6 Score=24.31 Aligned_cols=32 Identities=25% Similarity=0.671 Sum_probs=20.4
Q ss_pred cccccccccc--CCCceeeC-CCChhhHHHHHHHh
Q 033497 72 CTVCMENFLQ--AFPGKQVP-CGHVFHATCISTWI 103 (118)
Q Consensus 72 C~IC~~~~~~--~~~~~~~~-C~H~f~~~Ci~~~~ 103 (118)
||-|-..+.. +...+..+ |++.||..|-..|-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchh
Confidence 6655544332 22234555 99999999988873
No 189
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=38.48 E-value=6.5 Score=16.80 Aligned_cols=6 Identities=67% Similarity=1.979 Sum_probs=3.0
Q ss_pred ccccCc
Q 033497 109 CPVCRS 114 (118)
Q Consensus 109 CP~Cr~ 114 (118)
||+|.+
T Consensus 9 cpvcqq 14 (29)
T 3vhs_A 9 CPVCQQ 14 (29)
T ss_dssp CTTTCC
T ss_pred ChHHHH
Confidence 555544
No 190
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.04 E-value=6.5 Score=21.11 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=17.8
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHH
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTW 102 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~ 102 (118)
..|..|...+.... ....=+..||..|..+.
T Consensus 35 F~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 35 FLCMVCRKNLDSTT--VAIHDAEVYCKSCYGKK 65 (81)
T ss_dssp EECSSSCCEECSSC--CEEETTEEECSHHHHHH
T ss_pred CccCCCCCCCCCCC--eEeeCCEEECHHHHHHH
Confidence 67777777665421 22224556777776554
No 191
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.05 E-value=12 Score=19.06 Aligned_cols=10 Identities=20% Similarity=0.570 Sum_probs=4.7
Q ss_pred cccccccccc
Q 033497 70 GRCTVCMENF 79 (118)
Q Consensus 70 ~~C~IC~~~~ 79 (118)
..|..|...+
T Consensus 33 F~C~~C~~~L 42 (65)
T 2iyb_E 33 FLCSCCSKCL 42 (65)
T ss_dssp SBCTTTCCBC
T ss_pred EECCCCCCcC
Confidence 4445554444
No 192
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.85 E-value=11 Score=16.55 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=16.6
Q ss_pred ccccccccccccCCCceeeCCCChhhHHH
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATC 98 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~C 98 (118)
..|+.|.......+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 35888987766532222 2466778777
No 193
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.32 E-value=1.7 Score=22.80 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=24.7
Q ss_pred ccccccccccccccCCCcee-eC--CC-ChhhHHHHHHHhh--CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQ-VP--CG-HVFHATCISTWIS--LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~-~~--C~-H~f~~~Ci~~~~~--~~~~CP~Cr~ 114 (118)
+..-| ||..... +. ++. -. |. ..||..|+.--.. .+-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34556 8977532 21 222 13 44 7999999973211 2235998864
No 194
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=35.15 E-value=5.5 Score=21.06 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=26.2
Q ss_pred ccccccccccccccCCCceee---CCCChhhHHHHHHHhh--------CCCcccccCc
Q 033497 68 TEGRCTVCMENFLQAFPGKQV---PCGHVFHATCISTWIS--------LSNSCPVCRS 114 (118)
Q Consensus 68 ~~~~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~~~~~--------~~~~CP~Cr~ 114 (118)
+...| ||......+ .++.. .|...||..|+.---. .+..||.||.
T Consensus 9 ~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34557 786554332 23443 2888999999742111 1345999974
No 195
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.50 E-value=13 Score=20.31 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=23.3
Q ss_pred cCcccccccccccccc-CCCc-eeeCCCChhhHHHH
Q 033497 66 AATEGRCTVCMENFLQ-AFPG-KQVPCGHVFHATCI 99 (118)
Q Consensus 66 ~~~~~~C~IC~~~~~~-~~~~-~~~~C~H~f~~~Ci 99 (118)
...+..|..|.+.|-. .+.. .-..|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 4566889999999753 1222 33349999888884
No 196
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.49 E-value=12 Score=19.13 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=4.4
Q ss_pred cccccccccc
Q 033497 71 RCTVCMENFL 80 (118)
Q Consensus 71 ~C~IC~~~~~ 80 (118)
.|..|-..+.
T Consensus 13 ~C~~C~~~i~ 22 (72)
T 3f6q_B 13 TCERCKGGFA 22 (72)
T ss_dssp BCTTTCCBCC
T ss_pred cchhcCcccc
Confidence 3444444433
No 197
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.13 E-value=25 Score=20.14 Aligned_cols=36 Identities=8% Similarity=-0.041 Sum_probs=22.5
Q ss_pred cccccccccccc-CCCceeeCCCChhhHHHHHHHhhCC
Q 033497 70 GRCTVCMENFLQ-AFPGKQVPCGHVFHATCISTWISLS 106 (118)
Q Consensus 70 ~~C~IC~~~~~~-~~~~~~~~C~H~f~~~Ci~~~~~~~ 106 (118)
+.|..|...+.. +. .....=+..||..|..+.+..+
T Consensus 31 F~C~~C~~~L~~~g~-~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGR-RLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CCCSSSCSCCCCSSS-CCCCBTTBCCCHHHHHHHHTSC
T ss_pred CcccccCCchhcCCC-eeEEECCeeechHHHHHHhCcc
Confidence 788888877753 11 1222346678888887766543
No 198
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.95 E-value=64 Score=17.47 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=18.9
Q ss_pred CccccccccccccccCCCceeeCCCChhhH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHA 96 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~ 96 (118)
.....|..|-..+.. ......|+..||.
T Consensus 23 ~~~~RC~~C~kkvgL--~~f~CrCg~~FCs 50 (74)
T 1wfp_A 23 STATRCLSCNKKVGV--TGFKCRCGSTFCG 50 (74)
T ss_dssp CCCCBCSSSCCBCTT--TCEECTTSCEECT
T ss_pred ccCccchhhcCcccc--cceEeccCCEecc
Confidence 344679999776543 1345579999987
No 199
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.86 E-value=26 Score=21.87 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=25.0
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCccc
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGV 116 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 116 (118)
+.|..|...+.... ...=|..||..|..+. ....|..|..+|
T Consensus 88 F~C~~C~~~L~~~~---f~~~g~~yC~~~y~~~--f~~kC~~C~~~I 129 (182)
T 2jtn_A 88 LKCSDCHVPLAERC---FSRGESVYCKDDFFKR--FGTKCAACQLGI 129 (182)
T ss_dssp TSCTTTCCCCSSCC---EEETTEEECHHHHHHT--TSCCCTTTCCCC
T ss_pred CccCCCCCccCCCc---eeECCEeeecCccccc--cccccccCCCcc
Confidence 67777777665421 2234566787776553 234577776655
No 200
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.34 E-value=32 Score=18.71 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=20.1
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhh
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWIS 104 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 104 (118)
+.|..|...+.... ....=+..||..|..+.+.
T Consensus 43 F~C~~C~~~L~~~~--~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 43 FRCSYCNNKLSLGT--YASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp CBCTTTCCBCCTTT--CCCSSSCCCCHHHHHHHSC
T ss_pred CeeCCCCCCCCCCC--cEeECCEEECHHHHHHHhC
Confidence 67777777665422 2223456788888766544
No 201
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.32 E-value=23 Score=18.50 Aligned_cols=8 Identities=25% Similarity=0.829 Sum_probs=3.5
Q ss_pred cccccccc
Q 033497 72 CTVCMENF 79 (118)
Q Consensus 72 C~IC~~~~ 79 (118)
|..|-..+
T Consensus 18 C~~C~~~I 25 (77)
T 2egq_A 18 CAGCKNPI 25 (77)
T ss_dssp CSSSCCCC
T ss_pred CcccCCcc
Confidence 44444443
No 202
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.52 E-value=38 Score=17.12 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=9.8
Q ss_pred Ccccccccccccccc
Q 033497 67 ATEGRCTVCMENFLQ 81 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~ 81 (118)
.+-..|++|...+..
T Consensus 8 L~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 8 LEILACPACHAPLEE 22 (56)
T ss_dssp TTSCCCSSSCSCEEE
T ss_pred HhheeCCCCCCccee
Confidence 344678888876543
No 203
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=29.06 E-value=8 Score=28.41 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=27.2
Q ss_pred cccccccccccCCCceee-CCCChhhHHHHHHHhh-----CCCcccccCc
Q 033497 71 RCTVCMENFLQAFPGKQV-PCGHVFHATCISTWIS-----LSNSCPVCRS 114 (118)
Q Consensus 71 ~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~-----~~~~CP~Cr~ 114 (118)
...||......+...+.. .|.-.||..|+.---. ....||.|+.
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 345887765433334433 4999999999953221 2346999965
No 204
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.87 E-value=1.6 Score=24.37 Aligned_cols=9 Identities=33% Similarity=1.003 Sum_probs=4.5
Q ss_pred ccccccccc
Q 033497 71 RCTVCMENF 79 (118)
Q Consensus 71 ~C~IC~~~~ 79 (118)
.|+.|..++
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 455555444
No 205
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=28.34 E-value=74 Score=16.99 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=23.5
Q ss_pred CccccccccccccccCCCceeeCCCChhhHHHHHH
Q 033497 67 ATEGRCTVCMENFLQAFPGKQVPCGHVFHATCIST 101 (118)
Q Consensus 67 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~ 101 (118)
..+..|.+|.+.-...-....+.|.-.||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 34567999975421111234567999999999986
No 206
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.15 E-value=17 Score=20.89 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=7.3
Q ss_pred CCcccccCccc
Q 033497 106 SNSCPVCRSGV 116 (118)
Q Consensus 106 ~~~CP~Cr~~~ 116 (118)
...||+|..++
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 44588887654
No 207
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.58 E-value=3.5 Score=20.47 Aligned_cols=9 Identities=33% Similarity=1.051 Sum_probs=5.6
Q ss_pred cccccCccc
Q 033497 108 SCPVCRSGV 116 (118)
Q Consensus 108 ~CP~Cr~~~ 116 (118)
.||.|...+
T Consensus 25 rCpyCGyri 33 (48)
T 4ayb_P 25 RCPYCGYKI 33 (48)
T ss_dssp CCTTTCCSC
T ss_pred ccCccCcEE
Confidence 577775543
No 208
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=25.40 E-value=37 Score=18.71 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=29.0
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhCCCcccccCcccC
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISLSNSCPVCRSGVI 117 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 117 (118)
+.|..|...+... .....=+..||..|..+ .....|..|..+|.
T Consensus 34 F~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANE--TFVAKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSS--CCEEETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CcccccCCCCCcC--eeECcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 7788888777432 22333566788888643 23457999988775
No 209
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.42 E-value=21 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=17.9
Q ss_pred cccccccccccccCCCceeeCCCChhhH
Q 033497 69 EGRCTVCMENFLQAFPGKQVPCGHVFHA 96 (118)
Q Consensus 69 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~ 96 (118)
...|..|...-. .-.-|.|||.+|.
T Consensus 24 ~~~C~~C~~~~~---~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQE---NWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSS---EEEETTTCCEEEC
T ss_pred CCcCccccCCCC---eeeeeecCccccC
Confidence 456999976533 3677889999874
No 210
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=24.36 E-value=17 Score=20.42 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=8.1
Q ss_pred cccccccccccc
Q 033497 68 TEGRCTVCMENF 79 (118)
Q Consensus 68 ~~~~C~IC~~~~ 79 (118)
-...|.||+..|
T Consensus 44 ~~i~C~VCr~tF 55 (86)
T 1wvk_A 44 MSIQCKVCMQTF 55 (86)
T ss_dssp CCEEETTTTEEE
T ss_pred hCCCChHhHhhH
Confidence 346788887654
No 211
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=80 Score=15.97 Aligned_cols=34 Identities=9% Similarity=0.139 Sum_probs=22.9
Q ss_pred ccccccccccccCCCceeeCCCChhhHHHHHHHhhC
Q 033497 70 GRCTVCMENFLQAFPGKQVPCGHVFHATCISTWISL 105 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~ 105 (118)
+.|..|...+.. ......=+..||..|..+.+..
T Consensus 34 F~C~~C~~~L~~--~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 34 FVCSTCRAQLRG--QHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CBCSSSCCBCTT--SCEEESSSCEEEHHHHHHHHHT
T ss_pred CcccccCCcCCc--CcCEeeCCeEECHHHHHHHHcc
Confidence 678888877743 2234445778899998877653
No 212
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=23.91 E-value=50 Score=18.25 Aligned_cols=39 Identities=21% Similarity=0.523 Sum_probs=25.1
Q ss_pred ccccccccccccCCC--c-eeeCCCChhhHHHHHHHhhCCCcccc
Q 033497 70 GRCTVCMENFLQAFP--G-KQVPCGHVFHATCISTWISLSNSCPV 111 (118)
Q Consensus 70 ~~C~IC~~~~~~~~~--~-~~~~C~H~f~~~Ci~~~~~~~~~CP~ 111 (118)
..|.+|-+....... . +-+=|+-.+|.+|+..+ ...|++
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 579999877543221 1 22338999999998775 444654
Done!