BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033498
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V0T|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 9 PRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 68
PRF ENLE NK+++ R+ L+ K GCT QLALAWV HQG+DV PIPGTTKI+NL+ N+
Sbjct: 231 PRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNV 290
Query: 69 KALSVKLTPXXXXXXXXXXXXXXVRG---HRYGGVTPTYEDSETPPL 112
AL VKLT V G H VT ++ + TPPL
Sbjct: 291 GALKVKLTKEDLKEISDAVPLDEVAGESIHEVIAVT-NWKFANTPPL 336
>pdb|3V0U|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 338
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 9 PRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 68
PRF ENLE NK+++ R+ L+ K GCT QLALAWV HQG+DV PIPGTTKI+NL+ N+
Sbjct: 232 PRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNV 291
Query: 69 KALSVKLTPXXXXXXXXXXXXXXVRG---HRYGGVTPTYEDSETPPL 112
AL VKLT V G H VT ++ + TPPL
Sbjct: 292 GALKVKLTKEDLKEISDAVPLDEVAGESIHEVIAVT-NWKFANTPPL 337
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 9 PRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 68
PRF ENLE NK+++ R+ L+ K GCT QLALAWV HQG+DV PIPGTTKI+NL+ N+
Sbjct: 232 PRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNV 291
Query: 69 KALSVKLTPXXXXXXXXXXXXXXVRG---HRYGGVTPTYEDSETPPL 112
AL VKLT V G H VT ++ + TPPL
Sbjct: 292 GALKVKLTKEDLKEISDAVPLDEVAGESIHEVIAVT-NWKFANTPPL 337
>pdb|3V0S|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 9 PRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNI 68
PRF ENLE NK+++ R+ L+ K GCT QLALAWV HQG+DV PIPGTTKI+NL+ N+
Sbjct: 231 PRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNV 290
Query: 69 KALSVKLTPXXXXXXXXXXXXXXVRG---HRYGGVTPTYEDSETPPL 112
AL V LT V G H VT ++ + TPPL
Sbjct: 291 GALKVXLTKEDLKEISDAVPLDEVAGESIHEVIAVT-NWKFANTPPL 336
>pdb|1LQA|A Chain A, Tas Protein From Escherichia Coli In Complex With Nadph
pdb|1LQA|B Chain B, Tas Protein From Escherichia Coli In Complex With Nadph
Length = 346
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 SLLPRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLN 65
+L RF + E +K ++A + G +Q+ALA+V Q + G T ++ L
Sbjct: 257 TLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLK 316
Query: 66 QNIKALSVKLT 76
NI++L ++L+
Sbjct: 317 TNIESLHLELS 327
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALS 72
E N +NE+A ++G + +Q+AL+W+ + G ++ E L +N++AL+
Sbjct: 261 EANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALN 316
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALS 72
E N +NE+A ++G + +Q+AL+W+ + G ++ E L +N++AL+
Sbjct: 281 EANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALN 336
>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
pdb|3ERP|B Chain B, Structure Of Idp01002, A Putative Oxidoreductase From And
Essential Gene Of Salmonella Typhimurium
Length = 353
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 RF-QPENLEHNK-KLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQN 67
RF +PE + +K + R+NELA ++G SQ+ALAWV + + G +K +
Sbjct: 269 RFLKPEQITADKLEKVRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDA 328
Query: 68 IKALS 72
+ L+
Sbjct: 329 VGMLA 333
>pdb|1ZGD|A Chain A, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
Resolution
pdb|1ZGD|B Chain B, Chalcone Reductase Complexed With Nadp+ At 1.7 Angstrom
Resolution
Length = 312
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPXXXXXX 83
+ + E+A G + +Q++L W++ QG V +P + E +NQN++ LT
Sbjct: 232 DMLKEIADAHGKSVAQISLRWLYEQG--VTFVPKSYDKERMNQNLRIFDWSLTKEDHEKI 289
Query: 84 XXXXXXXXVRGHRYGGVTPTYED 106
+ G G+ Y+D
Sbjct: 290 AQIKQNRLIPGPTKPGLNDLYDD 312
>pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 367
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 14 ENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
E KL E + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 281 EGRRQQAKLKE-LQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 339
>pdb|3EB3|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (W121a) In
Complex With Cortisone
Length = 327
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 255 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 305
>pdb|3EB4|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (I211r) In
Complex With Cortisone
Length = 327
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 255 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 305
>pdb|3EAU|A Chain A, Voltage-Dependent K+ Channel Beta Subunit In Complex With
Cortisone
Length = 327
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 255 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 305
>pdb|2A79|A Chain A, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
pdb|2R9R|A Chain A, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|G Chain G, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|3LNM|A Chain A, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|C Chain C, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 333
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 255 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 305
>pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|B Chain B, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|C Chain C, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|D Chain D, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
Length = 325
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 254 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 304
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 332
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + E L +NI A+ V
Sbjct: 254 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQV 304
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73
+ + +A + GCT QLA+AW + G + + L +NI A+ V
Sbjct: 276 LKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQV 326
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 9 PRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQG 49
P+FQ N E + +LA K+G + A+ WV QG
Sbjct: 252 PKFQKPNFEKYLAAMDEFEKLAEKRGKSVMAFAVRWVLDQG 292
>pdb|4EP4|A Chain A, Thermus Thermophilus Ruvc Structure
pdb|4EP4|B Chain B, Thermus Thermophilus Ruvc Structure
Length = 166
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 5 MSLLPRFQPENLEHNKKLFERVNELAVKKG 34
+ +L RF+PE + ++ F R NELA K G
Sbjct: 56 LEVLHRFRPEAVAVEEQFFYRQNELAYKVG 85
>pdb|4EP5|A Chain A, Thermus Thermophilus Ruvc Structure
Length = 166
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 5 MSLLPRFQPENLEHNKKLFERVNELAVKKG 34
+ +L RF+PE + ++ F R NELA K G
Sbjct: 56 LEVLHRFRPEAVAVEEQFFYRQNELAYKVG 85
>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Apo)
pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Holo)
Length = 312
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 11 FQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKA 70
F+ E + N + ++ +A K + LAW + + IPG + + L NIK
Sbjct: 233 FKGERFKENIRKVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKT 292
Query: 71 LSVKLT 76
V L+
Sbjct: 293 ADVTLS 298
>pdb|3T6A|A Chain A, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|B Chain B, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|C Chain C, Structure Of The C-Terminal Domain Of Bcar3
pdb|3T6A|D Chain D, Structure Of The C-Terminal Domain Of Bcar3
Length = 333
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 7 LLPRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQ 66
+L FQP+ E +NE+ T Q+ L W G + T + E NQ
Sbjct: 264 ILAGFQPD---------EEMNEICK----TEFQMRLLW----GSKGAQVNQTERYEKFNQ 306
Query: 67 NIKALSVKLTP 77
+ ALS KL P
Sbjct: 307 ILTALSRKLEP 317
>pdb|1OG6|A Chain A, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
pdb|1OG6|B Chain B, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
pdb|1OG6|C Chain C, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
Nadph
Length = 298
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 39 QLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLT 76
Q+ AWV PI G+ KIE + ++A ++K+T
Sbjct: 244 QVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMT 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,341,263
Number of Sequences: 62578
Number of extensions: 94276
Number of successful extensions: 214
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 23
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)