Query 033498
Match_columns 118
No_of_seqs 192 out of 1534
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 04:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v0s_A Perakine reductase; AKR 99.9 8.3E-22 2.8E-26 149.7 9.2 105 8-112 230-336 (337)
2 3n2t_A Putative oxidoreductase 99.7 4.1E-18 1.4E-22 129.9 6.3 92 9-101 252-345 (348)
3 1pz1_A GSP69, general stress p 99.7 7.2E-18 2.5E-22 127.8 5.1 90 10-99 232-325 (333)
4 1pyf_A IOLS protein; beta-alph 99.7 6.2E-17 2.1E-21 121.4 8.4 78 11-88 233-310 (312)
5 3eau_A Voltage-gated potassium 99.7 2.4E-16 8.2E-21 118.8 9.7 74 17-90 249-324 (327)
6 3lut_A Voltage-gated potassium 99.7 9.3E-17 3.2E-21 123.0 7.4 80 18-97 284-365 (367)
7 1lqa_A TAS protein; TIM barrel 99.7 2.7E-16 9.3E-21 119.1 9.8 79 11-89 262-340 (346)
8 3n6q_A YGHZ aldo-keto reductas 99.6 1.4E-15 4.9E-20 115.5 9.8 73 17-89 261-334 (346)
9 1zgd_A Chalcone reductase; pol 99.6 7.2E-16 2.5E-20 115.8 8.0 81 24-106 232-312 (312)
10 3erp_A Putative oxidoreductase 99.6 2E-15 7E-20 115.1 9.6 72 17-88 278-350 (353)
11 4gac_A Alcohol dehydrogenase [ 99.6 1.3E-15 4.5E-20 114.4 7.8 65 23-89 230-294 (324)
12 1ur3_M Hypothetical oxidoreduc 99.6 2.4E-15 8.3E-20 113.5 9.1 75 18-92 243-318 (319)
13 4gie_A Prostaglandin F synthas 99.6 3.2E-15 1.1E-19 111.5 8.8 65 23-89 210-274 (290)
14 3b3d_A YTBE protein, putative 99.6 7.4E-15 2.5E-19 110.6 9.2 63 25-89 240-302 (314)
15 1gve_A Aflatoxin B1 aldehyde r 99.6 1.3E-14 4.3E-19 109.4 9.2 74 17-90 235-318 (327)
16 3up8_A Putative 2,5-diketo-D-g 99.5 1.9E-14 6.6E-19 107.8 8.9 64 24-88 218-281 (298)
17 3ln3_A Dihydrodiol dehydrogena 99.5 2.9E-14 9.8E-19 107.4 9.5 65 23-89 239-303 (324)
18 3h7u_A Aldo-keto reductase; st 99.5 1.8E-14 6E-19 109.4 7.8 73 24-98 245-317 (335)
19 3h7r_A Aldo-keto reductase; st 99.5 1.9E-14 6.4E-19 109.1 7.9 70 23-94 240-309 (331)
20 3o3r_A Aldo-keto reductase fam 99.5 3.3E-14 1.1E-18 106.9 8.9 65 24-90 232-296 (316)
21 2bp1_A Aflatoxin B1 aldehyde r 99.5 3.3E-14 1.1E-18 108.7 8.4 73 17-89 268-350 (360)
22 2wzm_A Aldo-keto reductase; ox 99.5 6.4E-14 2.2E-18 104.2 9.6 64 24-89 207-270 (283)
23 3f7j_A YVGN protein; aldo-keto 99.5 6.8E-14 2.3E-18 103.6 9.1 64 24-89 201-264 (276)
24 1qwk_A Aldose reductase, aldo- 99.5 8.6E-14 2.9E-18 104.7 9.2 65 23-89 231-295 (317)
25 1us0_A Aldose reductase; oxido 99.5 1.2E-13 4.1E-18 103.8 9.4 65 23-89 231-295 (316)
26 3b3e_A YVGN protein; aldo-keto 99.5 1.1E-13 3.8E-18 104.2 9.1 64 24-89 235-298 (310)
27 4f40_A Prostaglandin F2-alpha 99.5 1.5E-13 5.2E-18 102.2 9.6 64 24-89 213-276 (288)
28 1mi3_A Xylose reductase, XR; a 99.5 8.3E-14 2.8E-18 104.9 8.1 63 24-88 243-305 (322)
29 1afs_A 3-alpha-HSD, 3-alpha-hy 99.5 1.3E-13 4.3E-18 104.0 9.0 65 23-89 238-302 (323)
30 3buv_A 3-OXO-5-beta-steroid 4- 99.5 1.6E-13 5.6E-18 103.5 9.5 65 23-89 241-305 (326)
31 3o0k_A Aldo/keto reductase; ss 99.5 9.3E-14 3.2E-18 103.3 7.7 61 24-86 222-282 (283)
32 1ynp_A Oxidoreductase, AKR11C1 99.5 8.5E-14 2.9E-18 104.8 7.5 68 20-89 241-309 (317)
33 1vbj_A Prostaglandin F synthas 99.5 2.3E-13 7.7E-18 101.1 9.1 64 24-89 204-267 (281)
34 1vp5_A 2,5-diketo-D-gluconic a 99.5 2.1E-13 7.3E-18 102.1 8.4 64 24-89 214-277 (298)
35 1hw6_A 2,5-diketo-D-gluconic a 99.5 2E-13 6.9E-18 101.1 8.1 64 24-89 201-264 (278)
36 1mzr_A 2,5-diketo-D-gluconate 99.4 2.7E-13 9.3E-18 101.5 8.6 64 24-89 221-284 (296)
37 1s1p_A Aldo-keto reductase fam 99.4 1.9E-13 6.6E-18 103.4 7.7 64 24-89 239-302 (331)
38 2bgs_A Aldose reductase; holoe 99.4 2.7E-13 9.2E-18 103.4 6.8 64 24-89 252-315 (344)
39 3krb_A Aldose reductase; ssgci 99.3 5.9E-13 2E-17 100.9 4.7 73 23-101 248-325 (334)
40 4exb_A Putative uncharacterize 99.1 4.6E-11 1.6E-15 89.1 2.4 49 30-78 244-292 (292)
41 4abx_A DNA repair protein RECN 73.9 4.3 0.00015 27.3 4.1 31 11-41 119-149 (175)
42 3h87_C Putative uncharacterize 71.0 13 0.00045 21.7 6.5 47 21-71 12-59 (73)
43 2glo_A Brinker CG9653-PA; prot 70.3 9.7 0.00033 20.5 4.4 37 10-47 5-48 (59)
44 2cpg_A REPA protein, transcrip 70.2 8.8 0.0003 19.4 4.2 25 20-44 11-35 (45)
45 2rn7_A IS629 ORFA; helix, all 65.9 13 0.00043 22.4 4.7 40 8-48 4-54 (108)
46 2k9i_A Plasmid PRN1, complete 63.8 14 0.00047 19.4 4.2 24 20-43 18-41 (55)
47 2a6c_A Helix-turn-helix motif; 62.5 11 0.00036 21.6 3.8 29 16-44 13-41 (83)
48 4hv0_A AVTR; ribbon-helix-heli 60.9 14 0.00048 23.0 4.1 26 21-46 8-33 (106)
49 2gpe_A Bifunctional protein PU 60.0 12 0.0004 19.7 3.4 22 21-42 13-34 (52)
50 4e2i_2 DNA polymerase alpha su 56.6 20 0.00068 21.3 4.1 33 59-91 3-35 (78)
51 2keb_A DNA polymerase subunit 55.7 21 0.00072 22.2 4.3 26 21-46 45-70 (101)
52 2ay0_A Bifunctional PUTA prote 53.2 17 0.00059 19.9 3.4 21 21-41 13-33 (58)
53 3hpw_C Protein CCDA; alpha+bet 51.7 21 0.00072 17.9 3.2 26 14-39 7-32 (36)
54 2hin_A GP39, repressor protein 50.9 33 0.0011 19.6 5.8 50 17-76 4-53 (71)
55 1uxc_A FRUR (1-57), fructose r 49.7 32 0.0011 19.1 4.8 47 26-75 3-49 (65)
56 1p94_A Plasmid partition prote 48.9 36 0.0012 19.8 4.4 23 20-42 43-65 (76)
57 3kz3_A Repressor protein CI; f 46.8 32 0.0011 19.1 4.0 26 18-43 9-34 (80)
58 2ba3_A NIKA; dimer, bacterial 44.1 34 0.0012 17.8 4.3 27 20-46 24-50 (51)
59 2an7_A Protein PARD; bacterial 44.0 31 0.0011 20.6 3.6 25 21-45 11-35 (83)
60 2l8n_A Transcriptional repress 43.1 36 0.0012 19.0 3.7 44 25-74 11-54 (67)
61 4epz_A Transcription anti-term 43.1 28 0.00095 23.4 3.6 65 2-68 21-88 (162)
62 3b7h_A Prophage LP1 protein 11 41.8 15 0.00052 20.1 2.0 23 22-44 8-30 (78)
63 1e0g_A Membrane-bound lytic mu 40.3 25 0.00087 17.5 2.6 17 25-41 12-28 (48)
64 2ko4_A Mediator of RNA polymer 38.6 32 0.0011 20.5 3.0 33 55-89 33-65 (81)
65 2elh_A CG11849-PA, LD40883P; s 38.2 57 0.002 18.7 5.5 20 26-46 41-60 (87)
66 2l02_A Uncharacterized protein 37.9 43 0.0015 20.0 3.6 26 26-51 25-52 (82)
67 3hrs_A Metalloregulator SCAR; 37.8 93 0.0032 21.1 6.1 56 61-116 90-147 (214)
68 1zs4_A Regulatory protein CII; 37.6 65 0.0022 19.2 6.6 47 27-86 28-74 (83)
69 3bq3_A Defective in cullin ned 37.2 86 0.0029 22.7 5.8 49 23-71 91-153 (270)
70 2c35_A Human RPB4, DNA-directe 35.7 72 0.0025 20.9 4.8 54 25-88 92-145 (152)
71 3t76_A VANU, transcriptional r 34.7 18 0.00062 21.4 1.6 19 25-43 28-46 (88)
72 4gba_A DCN1-like protein 3; E3 34.1 29 0.00098 24.5 2.7 61 23-84 25-100 (221)
73 2k5j_A Uncharacterized protein 34.1 50 0.0017 19.1 3.5 23 20-42 18-40 (80)
74 2r1j_L Repressor protein C2; p 33.2 23 0.00077 18.7 1.7 18 26-43 10-27 (68)
75 3qoq_A Alginate and motility r 31.7 63 0.0022 18.5 3.5 25 21-45 29-53 (69)
76 2djp_A Hypothetical protein SB 31.5 38 0.0013 19.0 2.6 19 24-42 24-42 (77)
77 2l01_A Uncharacterized protein 31.1 62 0.0021 19.0 3.5 26 26-51 27-55 (77)
78 1tc3_C Protein (TC3 transposas 30.8 40 0.0014 16.2 2.4 20 26-46 24-43 (51)
79 2xzm_O RPS13E; ribosome, trans 30.4 61 0.0021 21.6 3.7 73 12-87 24-98 (153)
80 3i5g_B Myosin regulatory light 29.7 68 0.0023 20.2 3.9 24 59-82 82-109 (153)
81 2ajj_A NS5A, nonstructural pro 29.6 20 0.00068 17.0 0.9 22 23-44 6-27 (28)
82 3l8m_A Probable thiamine pyrop 29.1 73 0.0025 21.9 4.2 40 32-71 72-113 (212)
83 2lv7_A Calcium-binding protein 27.7 33 0.0011 20.4 2.0 31 57-87 51-81 (100)
84 3u5c_N S27A, YS15, 40S ribosom 27.1 61 0.0021 21.6 3.2 73 12-87 22-96 (151)
85 1adr_A P22 C2 repressor; trans 26.9 33 0.0011 18.5 1.7 18 26-43 10-27 (76)
86 1y7y_A C.AHDI; helix-turn-heli 26.7 58 0.002 17.3 2.8 25 20-44 12-36 (74)
87 2hsg_A Glucose-resistance amyl 25.7 90 0.0031 21.9 4.3 45 26-76 5-49 (332)
88 1y14_A B32, RPB4, DNA-directed 25.6 1.6E+02 0.0056 20.1 5.9 31 57-87 150-180 (187)
89 3kk4_A Uncharacterized protein 25.3 59 0.002 20.9 2.8 23 22-44 38-60 (125)
90 3h5t_A Transcriptional regulat 24.7 79 0.0027 22.6 3.9 44 25-74 11-54 (366)
91 1p1j_A Inositol-3-phosphate sy 24.7 63 0.0021 25.9 3.4 72 17-90 218-290 (533)
92 2jn6_A Protein CGL2762, transp 23.6 54 0.0019 19.0 2.4 39 9-48 4-47 (97)
93 1vko_A Inositol-3-phosphate sy 23.4 59 0.002 26.0 3.0 72 17-90 222-294 (537)
94 2jrt_A Uncharacterized protein 22.9 61 0.0021 19.5 2.5 23 25-48 51-73 (95)
95 1du6_A PBX1, homeobox protein 22.7 98 0.0034 16.5 3.7 25 24-48 34-58 (64)
96 3i5g_C Myosin catalytic light 22.7 70 0.0024 20.3 2.9 31 57-87 100-130 (159)
97 3r46_A Coiled coil helix L24D; 22.5 77 0.0026 15.2 2.7 13 21-33 6-18 (35)
98 1dw9_A Cyanate lyase; cyanate 22.4 1.2E+02 0.0042 20.1 4.1 49 26-85 29-77 (156)
99 2bnm_A Epoxidase; oxidoreducta 22.3 76 0.0026 20.7 3.2 54 21-74 10-66 (198)
100 3kjx_A Transcriptional regulat 22.3 75 0.0026 22.5 3.3 43 25-73 12-54 (344)
101 1k61_A Mating-type protein alp 22.1 98 0.0034 16.3 3.7 24 24-47 29-52 (60)
102 3dte_A IRRE protein; radiotole 21.9 1.3E+02 0.0045 22.0 4.6 33 24-56 162-194 (301)
103 3f6w_A XRE-family like protein 21.9 62 0.0021 17.8 2.3 26 19-44 12-37 (83)
104 3k94_A Thiamin pyrophosphokina 21.9 1.2E+02 0.0042 21.0 4.3 39 33-71 76-116 (223)
105 1qpz_A PURA, protein (purine n 21.7 1.4E+02 0.0048 21.0 4.7 44 26-75 3-46 (340)
106 3qq6_A HTH-type transcriptiona 21.5 37 0.0013 19.0 1.2 14 27-40 27-40 (78)
107 2b1u_A Calmodulin-like protein 21.2 72 0.0025 16.5 2.4 31 57-87 21-51 (71)
108 2kz5_A Transcription factor NF 20.9 1E+02 0.0034 18.7 3.1 23 23-45 45-67 (91)
109 1jko_C HIN recombinase, DNA-in 20.8 55 0.0019 15.9 1.8 14 26-39 24-37 (52)
110 2x48_A CAG38821; archeal virus 20.8 76 0.0026 16.1 2.4 13 27-39 35-47 (55)
111 1baz_A ARC repressor; transcri 20.7 1.1E+02 0.0036 16.2 4.0 23 21-43 17-39 (53)
112 2dmn_A Homeobox protein TGIF2L 20.7 1.3E+02 0.0045 17.2 3.7 23 25-47 39-61 (83)
113 1wlz_A DJBP, CAP-binding prote 20.4 1.2E+02 0.0041 17.2 3.5 31 57-87 39-69 (105)
114 2k9q_A Uncharacterized protein 20.2 1.2E+02 0.004 16.4 4.8 19 60-80 43-61 (77)
115 2kpj_A SOS-response transcript 20.0 51 0.0018 18.9 1.7 21 23-43 11-31 (94)
116 3lm8_A Thiamine pyrophosphokin 20.0 1.2E+02 0.0039 21.1 3.8 38 33-70 77-116 (222)
117 2ktg_A Calmodulin, putative; e 20.0 1.2E+02 0.004 16.3 3.3 31 57-87 29-59 (85)
No 1
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=99.86 E-value=8.3e-22 Score=149.66 Aligned_cols=105 Identities=50% Similarity=0.814 Sum_probs=73.7
Q ss_pred CCCCCccchHhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 8 LPRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
.++|.+..++++++.++.++++|+++|+|++|+||+|+++++.+++||||+++++||++|+++.+++|++++++.|++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~t~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 309 (337)
T 3v0s_A 230 HPRFVGENLEKNKQIYYRIEALSQKHGCTPVQLALAWVLHQGEDVVPIPGTTKIKNLHNNVGALKVXLTKEDLKEISDAV 309 (337)
T ss_dssp ---------------CHHHHHHHHHTTSCHHHHHHHHHHTTCTTBCCCCCCSCHHHHHHHHHGGGCCCCHHHHHHHHHTC
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHhccCCCHHHHHHHHHhh
Confidence 35566667788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCCCCC--CCCCCCCCCCCCC
Q 033498 88 SADAVRGHRYGG--VTPTYEDSETPPL 112 (118)
Q Consensus 88 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 112 (118)
....+.|.||+. ....|++++++||
T Consensus 310 ~~~~~~g~~~~~~~~~~~~~~~~~~~~ 336 (337)
T 3v0s_A 310 PLDEVAGESIHEVIAVTNWKFANTPPL 336 (337)
T ss_dssp C-----------------CTTCCCCCC
T ss_pred cccCCCCCCchHHHhhhhhhcCCCCCC
Confidence 988889999998 6779999999998
No 2
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=99.72 E-value=4.1e-18 Score=129.86 Aligned_cols=92 Identities=23% Similarity=0.314 Sum_probs=81.6
Q ss_pred CCCCccchHhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 033498 9 PRFQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIAS 88 (118)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~ 88 (118)
++|.+..++++++.++.++++|+++|+|++|+||+|++++ ++++||||+++++||++|+++.++.|++++++.|+++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~l~~iA~~~g~t~aqvaL~w~l~~-~v~~~I~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~ 330 (348)
T 3n2t_A 252 PKFQKPNFEKYLAAMDEFEKLAEKRGKSVMAFAVRWVLDQ-GPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDILA 330 (348)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTT-TTEEEEEECSSGGGGTTHHHHSSCCCCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHC-CCcEEEeCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4466667788899999999999999999999999999999 788999999999999999999999999999999999988
Q ss_pred CC--CcCCCCCCCCC
Q 033498 89 AD--AVRGHRYGGVT 101 (118)
Q Consensus 89 ~~--~~~~~~~~~~~ 101 (118)
.. .+.|.||..+.
T Consensus 331 ~~~~~~~g~~~~~~~ 345 (348)
T 3n2t_A 331 RHVPNPIDPTFMAPP 345 (348)
T ss_dssp HHSCCCCCSSCCC--
T ss_pred HhccCCCCccccCCc
Confidence 65 45688887664
No 3
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=99.70 E-value=7.2e-18 Score=127.77 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=81.5
Q ss_pred CCCccchHhhHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 033498 10 RFQPENLEHNKKLFERVNELAVKKGC-TRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIAS 88 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~ia~~~g~-s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~ 88 (118)
.|.+..+.++++.++.++++|+++|+ |++|+||+|+++++.+++||||+++++||++|+++.++.|++++++.|+++..
T Consensus 232 ~~~~~~~~~~~~~~~~l~~ia~~~g~~s~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 311 (333)
T 1pz1_A 232 KFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWILDQPGADIALWGARKPGQLEALSEITGWTLNSEDQKDINTILE 311 (333)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHTSTTCCEEEEECCSGGGGTTCTTSSSCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 34445577888999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CC--CcCCCCC-CC
Q 033498 89 AD--AVRGHRY-GG 99 (118)
Q Consensus 89 ~~--~~~~~~~-~~ 99 (118)
.. ++.|.|| +.
T Consensus 312 ~~~~~~~g~~~~~~ 325 (333)
T 1pz1_A 312 NTISDPVGPEFMAP 325 (333)
T ss_dssp HHCSSCCCSGGGCC
T ss_pred hcccCCccccccch
Confidence 76 6778888 44
No 4
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=99.69 E-value=6.2e-17 Score=121.43 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=71.4
Q ss_pred CCccchHhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 033498 11 FQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIAS 88 (118)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~ 88 (118)
|....++++++.++.++++|+++|+|++|+||+|++++|.+++||||+++++||++|+++.++.|++++++.|++++.
T Consensus 233 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 310 (312)
T 1pyf_A 233 FKGERFKENIRKVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFA 310 (312)
T ss_dssp GSHHHHHHHHHHHHTTHHHHHHTTSCHHHHHHHHHHHSTTCCCBCCCCSSHHHHHHHHGGGGCCCCHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHhc
Confidence 333445677888899999999999999999999999999999999999999999999999999999999999999875
No 5
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=99.67 E-value=2.4e-16 Score=118.80 Aligned_cols=74 Identities=28% Similarity=0.484 Sum_probs=69.0
Q ss_pred HhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCC--CCCHHHHHHHHhhhcCC
Q 033498 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV--KLTPEEIAELESIASAD 90 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~--~Ls~e~~~~l~~~~~~~ 90 (118)
.++++.++.++++|+++|+|++|+||+|++++|++++||||+++++||++|+++.++ .|++++++.|+++....
T Consensus 249 ~~~~~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~~L~~e~~~~i~~~~~~~ 324 (327)
T 3eau_A 249 RRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNK 324 (327)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHSSTTCCEEEECCSSHHHHHHHHGGGGGGGGCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHhCCCCceEEeCCCCHHHHHHHHHHhccCCCCCHHHHHHHHHHhhcc
Confidence 455678899999999999999999999999999999999999999999999999998 99999999999998754
No 6
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=99.67 E-value=9.3e-17 Score=123.04 Aligned_cols=80 Identities=28% Similarity=0.471 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCC--CCCHHHHHHHHhhhcCCCcCCC
Q 033498 18 HNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV--KLTPEEIAELESIASADAVRGH 95 (118)
Q Consensus 18 ~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~--~Ls~e~~~~l~~~~~~~~~~~~ 95 (118)
+.+..++.|+++|+++|+|++|+||+|+++++.+++||||+++++||++|+++.++ .|++++++.|+++....+..+.
T Consensus 284 ~~~~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~~Ls~e~~~~i~~~~~~~~~~~~ 363 (367)
T 3lut_A 284 RQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKK 363 (367)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHTSTTEEEEEECCSSHHHHHHHHTHHHHGGGCCHHHHHHHHHHHCCCCCC--
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCcEEecCCCCHHHHHHHHHhhcccCCCCHHHHHHHHHHHhcCCCccc
Confidence 44567889999999999999999999999999988999999999999999999986 8999999999999988777666
Q ss_pred CC
Q 033498 96 RY 97 (118)
Q Consensus 96 ~~ 97 (118)
+|
T Consensus 364 ~~ 365 (367)
T 3lut_A 364 DY 365 (367)
T ss_dssp --
T ss_pred cc
Confidence 65
No 7
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=99.67 E-value=2.7e-16 Score=119.12 Aligned_cols=79 Identities=27% Similarity=0.417 Sum_probs=72.0
Q ss_pred CCccchHhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 11 FQPENLEHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
|.....+.+++.++.++++|+++|+|++|+||+|++++|.+++||||+++++||++|+++.+++|++++++.|+++...
T Consensus 262 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqvaL~w~l~~~~v~~~I~g~~~~~~l~enl~a~~~~L~~e~~~~l~~~~~~ 340 (346)
T 1lqa_A 262 FTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQV 340 (346)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSHHHHHHHHGGGGCCCCHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHhh
Confidence 3333456778899999999999999999999999999999889999999999999999999999999999999998753
No 8
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=99.63 E-value=1.4e-15 Score=115.49 Aligned_cols=73 Identities=25% Similarity=0.492 Sum_probs=69.2
Q ss_pred HhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhc-CCCCCHHHHHHHHhhhcC
Q 033498 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKAL-SVKLTPEEIAELESIASA 89 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~-~~~Ls~e~~~~l~~~~~~ 89 (118)
+.+++.++.++++|+++|+|++|+||+|++++|.+++||||+++++||++|++++ ++.|++++++.|+++.+.
T Consensus 261 ~~~~~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i~~~~~~ 334 (346)
T 3n6q_A 261 EANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIAD 334 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSSTTCSEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHHHHHHhc
Confidence 5678889999999999999999999999999999999999999999999999997 799999999999999864
No 9
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=99.63 E-value=7.2e-16 Score=115.84 Aligned_cols=81 Identities=27% Similarity=0.487 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCCCcCCCCCCCCCCC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASADAVRGHRYGGVTPT 103 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~~~~~~~~~~~~~~ 103 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++.......|.|++...+.
T Consensus 232 ~~l~~ia~~~g~s~aqvaL~w~l~~~--~~~I~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (312)
T 1zgd_A 232 DMLKEIADAHGKSVAQISLRWLYEQG--VTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIAQIKQNRLIPGPTKPGLNDL 309 (312)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHTT--CEECCCCCSHHHHHHTTCCSSCCCCHHHHHHHTTSCCCCSCCCSEESCCTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCC--CEEEeCCCCHHHHHHHHHhccCCCCHHHHHHHHHHhccCccCCCCCCChHHh
Confidence 57889999999999999999999996 5899999999999999999999999999999999988777788888776666
Q ss_pred CCC
Q 033498 104 YED 106 (118)
Q Consensus 104 ~~~ 106 (118)
|++
T Consensus 310 ~~~ 312 (312)
T 1zgd_A 310 YDD 312 (312)
T ss_dssp TCC
T ss_pred ccC
Confidence 663
No 10
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=99.61 E-value=2e-15 Score=115.14 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=68.3
Q ss_pred HhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhc-CCCCCHHHHHHHHhhhc
Q 033498 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKAL-SVKLTPEEIAELESIAS 88 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~-~~~Ls~e~~~~l~~~~~ 88 (118)
+.+++.++.++++|+++|+|++|+||+|+++++.|++||||+++++||++|+++. +++|++++++.|+++.+
T Consensus 278 ~~~~~~~~~l~~iA~~~g~t~aqvaL~w~l~~~~v~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i~~~~~ 350 (353)
T 3erp_A 278 ADKLEKVRRLNELAARRGQKLSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAILE 350 (353)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCCCEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Confidence 4578889999999999999999999999999999999999999999999999999 89999999999999874
No 11
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=99.61 E-value=1.3e-15 Score=114.44 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|+++++ .+||||+++++||+||+++.++.||++|+++|+++.+.
T Consensus 230 ~~~l~~iA~~~g~t~aqvaL~w~l~~~--~v~I~G~~~~~~l~eN~~a~~~~Ls~ee~~~id~l~~~ 294 (324)
T 4gac_A 230 EPVVLALAEKHGRSPAQILLRWQVQRK--VICIPKSINPSRILQNIQVFDFTFSPEEMKQLDALNKN 294 (324)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCCHHHHHHHTCCSSCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHCC--CEEEECCCCHHHHHHHHhhCCCCCCHHHHHHHhccCcC
Confidence 356889999999999999999999998 56999999999999999999999999999999998753
No 12
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=99.61 E-value=2.4e-15 Score=113.46 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHhCCCH-HHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCCCc
Q 033498 18 HNKKLFERVNELAVKKGCTR-SQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASADAV 92 (118)
Q Consensus 18 ~~~~~~~~l~~ia~~~g~s~-aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~~~ 92 (118)
......+.++++|+++|+|+ +|+||+|++++|.+++||||+++++||++|+++.++.|++++++.|+++.+.+++
T Consensus 243 ~~~~~~~~l~~ia~~~g~t~~aqvaL~w~l~~~~~~~~I~G~~~~~~l~en~~a~~~~Ls~ee~~~l~~~~~~~~~ 318 (319)
T 1ur3_M 243 YFQPLRDELAVVAEELNAGSIEQVVNAWVLRLPSQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRKAALGYDV 318 (319)
T ss_dssp GGHHHHHHHHHHHHHTTCSCHHHHHHHHHHTSTTCCEEEECCSCHHHHHHHHGGGGCCCCHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCC
Confidence 34567889999999999999 9999999999999999999999999999999999999999999999999876543
No 13
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=99.60 E-value=3.2e-15 Score=111.46 Aligned_cols=65 Identities=23% Similarity=0.449 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|++++| .+||||+++++||++|+++.++.||+++++.|+++.+.
T Consensus 210 ~~~l~~iA~~~g~t~aqvaL~w~l~~~--~v~I~G~~~~~~l~eNl~a~~~~Ls~ee~~~ld~l~~~ 274 (290)
T 4gie_A 210 NHVLGEIAKKHNKSPAQVVIRWDIQHG--IVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNED 274 (290)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCSHHHHHHHHCCSSCCCCHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHhCC--CEEEECCCCHHHHHHHHhhcCCCCCHHHHHHHhccCCC
Confidence 356889999999999999999999998 56899999999999999999999999999999998764
No 14
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=7.4e-15 Score=110.59 Aligned_cols=63 Identities=19% Similarity=0.435 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 25 RVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++|+++|+|++|+||+|++++| .+||||+++++||+||+++.++.|+++|+++|+++.+.
T Consensus 240 ~~~~ia~~~g~t~aqvaL~w~l~~~--~v~I~G~~~~~~l~eNl~a~~~~Ls~ee~~~ld~l~~~ 302 (314)
T 3b3d_A 240 VLADIAQTYNKSVAQIILRWDLQHG--IITIPKSTKEHRIKENASVFDFELTQDDMNRIDALNEN 302 (314)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTT--CEECCBCCCHHHHHHHHCCSSCCCCHHHHHHHHTTCCC
T ss_pred hhHHHHHHcCCCHHHHHHHHHHhCC--CEEEECCCCHHHHHHHHHhcCCCCCHHHHHHHhccCCC
Confidence 3578999999999999999999998 56899999999999999999999999999999998753
No 15
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=99.56 E-value=1.3e-14 Score=109.43 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=68.2
Q ss_pred HhhHHHHHHHHHHHHH----hCCCHHHHHHHHHHcCCCC-----ceecCCCCcHHHHHHHHhhcCC-CCCHHHHHHHHhh
Q 033498 17 EHNKKLFERVNELAVK----KGCTRSQLALAWVHHQGDD-----VCPIPGTTKIENLNQNIKALSV-KLTPEEIAELESI 86 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~----~g~s~aqlAL~w~l~~~~v-----~~~I~G~~~~~ql~en~~a~~~-~Ls~e~~~~l~~~ 86 (118)
+++++.++.++++|++ +|+|++|+||+|++++|.+ ++||||+++++||++|++++++ .|++++++.|+++
T Consensus 235 ~~~~~~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~~I~g~~~~~~l~en~~a~~~~~L~~e~~~~l~~~ 314 (327)
T 1gve_A 235 EEHFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVILGMSSLEQLEQNLALVEEGPLEPAVVDAFDQA 314 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTSSCCGGGTCEEEECCSSHHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHhCCCccccCCCeEEECCCCHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4567788999999999 9999999999999999988 7999999999999999999987 8999999999998
Q ss_pred hcCC
Q 033498 87 ASAD 90 (118)
Q Consensus 87 ~~~~ 90 (118)
....
T Consensus 315 ~~~~ 318 (327)
T 1gve_A 315 WNLV 318 (327)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7643
No 16
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=99.54 E-value=1.9e-14 Score=107.83 Aligned_cols=64 Identities=28% Similarity=0.438 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIAS 88 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~ 88 (118)
+.++++|+++|+|++|+||+|++++|+++ ||||+++++|+++|+++.+++|++++++.|+++..
T Consensus 218 ~~l~~ia~~~g~s~aqvaL~w~l~~p~v~-~I~g~~~~~~l~en~~a~~~~L~~ee~~~l~~l~~ 281 (298)
T 3up8_A 218 PLLTEIGGRHGKTAAQVALRWLVQQQDVI-VLSKTATEARLKENFAIFDFALTREEMAAVRELAR 281 (298)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTSTTEE-EEECCCSHHHHHHHHCCSSCCCCHHHHHHHHTTCC
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHCCCcE-EEECCCCHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999998765 89999999999999999999999999999999954
No 17
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=99.54 E-value=2.9e-14 Score=107.43 Aligned_cols=65 Identities=15% Similarity=0.399 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|+++++ .+||||+++++||++|+++.++.|++++++.|+++...
T Consensus 239 ~~~l~~ia~~~g~t~aqvaL~w~l~~~--~~~I~g~~~~~~l~en~~~~~~~L~~e~~~~l~~l~~~ 303 (324)
T 3ln3_A 239 DPVLCDVAXXNXRSPALIALRYLIQRG--IVPLAQSFXENEMRENLQVFGFQLSPEDMXTLDGLNXN 303 (324)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHTT--CEEEECCSSHHHHHHHGGGGGCCCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHhhCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHHHhhCCCCcCHHHHHHHHhcccC
Confidence 367899999999999999999999998 57999999999999999999999999999999999764
No 18
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=99.53 E-value=1.8e-14 Score=109.39 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCCCcCCCCCC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASADAVRGHRYG 98 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~~~~~~~~~ 98 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++.......+..|.
T Consensus 245 ~~l~~iA~~~g~t~aqvaL~w~l~~~--~~vI~g~~~~~~l~enl~a~~~~L~~e~~~~i~~l~~~~~~~~~~~~ 317 (335)
T 3h7u_A 245 PILNMVAEKLGKSPAQVALRWGLQMG--HSVLPKSTNEGRIKENFNVFDWSIPDYMFAKFAEIEQARLVTGSFLV 317 (335)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCSCHHHHHHHHCCSSCCCCHHHHHHGGGSCCCCSCCCGGGB
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHCC--CEEEeCCCCHHHHHHHHhhCCCCcCHHHHHHHHhHhhcCccccceec
Confidence 57889999999999999999999998 78999999999999999999999999999999999876665555553
No 19
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=99.53 E-value=1.9e-14 Score=109.12 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCCCcCC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASADAVRG 94 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~~~~~ 94 (118)
.+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++.......|
T Consensus 240 ~~~l~~iA~~~g~t~aqvaL~w~l~~~--~~vI~g~~~~~~l~en~~a~~~~L~~ee~~~l~~l~~~~~~~~ 309 (331)
T 3h7r_A 240 NPIVTEVAEKLGKTTAQVALRWGLQTG--HSVLPKSSSGARLKENLDVFDWSIPEDLFTKFSNIPQEKFCRA 309 (331)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCCCSCHHHHHHHTCCSSCCCCHHHHGGGGGSCCCCSCCC
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHHCC--CEEEeCCCCHHHHHHHHhhCCCCcCHHHHHHHHHhhhcCcccC
Confidence 367899999999999999999999998 7899999999999999999999999999999999987665555
No 20
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=99.52 E-value=3.3e-14 Score=106.86 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASAD 90 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~ 90 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++.+..
T Consensus 232 ~~l~~ia~~~g~t~aqvaL~w~l~~~--~~vi~g~~~~~~l~en~~a~~~~L~~ee~~~l~~l~~~~ 296 (316)
T 3o3r_A 232 PKIKEIAAKHKKTIAQVLIRFHVQRN--VAVIPKSVTLSHIKENIQVFDFQLSEEDMAAILSLNRNW 296 (316)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTT--CEECCBCCSHHHHHHHTCCSSCCCCHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CEEeCCCCCHHHHHHHHhhCCCCcCHHHHHHHHccccCC
Confidence 57899999999999999999999998 579999999999999999999999999999999997543
No 21
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=108.72 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=67.6
Q ss_pred HhhHHHHHHHHHHHHH----hCCCHHHHHHHHHHcCCCC-----ceecCCCCcHHHHHHHHhhcCC-CCCHHHHHHHHhh
Q 033498 17 EHNKKLFERVNELAVK----KGCTRSQLALAWVHHQGDD-----VCPIPGTTKIENLNQNIKALSV-KLTPEEIAELESI 86 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~----~g~s~aqlAL~w~l~~~~v-----~~~I~G~~~~~ql~en~~a~~~-~Ls~e~~~~l~~~ 86 (118)
+++++.++.++++|++ +|+|++|+||+|++++|.+ ++||||+++++||++|+++.++ .|++++++.|+++
T Consensus 268 ~~~~~~~~~l~~ia~~~~~~~g~s~aqvaL~w~l~~~~v~~~~g~~vI~G~~~~~~l~enl~a~~~~~L~~e~~~~l~~~ 347 (360)
T 2bp1_A 268 EHHFEAIALVEKALQAAYGASAPSVTSAALRWMYHHSQLQGAHGDAVILGMSSLEQLEQNLAATEEGPLEPAVVDAFNQA 347 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSSCCGGGTCEEEECCSSHHHHHHHHHHHTSCCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHhCCcccccCCCeEEECCCCHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4566788999999999 9999999999999999988 7999999999999999999987 8999999999998
Q ss_pred hcC
Q 033498 87 ASA 89 (118)
Q Consensus 87 ~~~ 89 (118)
...
T Consensus 348 ~~~ 350 (360)
T 2bp1_A 348 WHL 350 (360)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 22
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=99.51 E-value=6.4e-14 Score=104.17 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.+++|++++++.|+++...
T Consensus 207 ~~l~~ia~~~g~s~aqvaL~w~l~~~--~~~I~g~~~~~~l~en~~~~~~~L~~~~~~~l~~~~~~ 270 (283)
T 2wzm_A 207 PAVTAIAEAHGRTAAQVLLRWSIQLG--NVVISRSANPERIASNLDVFGFELTADEMETLNGLDDG 270 (283)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEEEECCSSHHHHHHHHCCSSCCCCHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHCC--CEEEeCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Confidence 46889999999999999999999996 48999999999999999999999999999999998754
No 23
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=99.50 E-value=6.8e-14 Score=103.57 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ .+||||+++++|+++|+++.+++|++++++.|+++.+.
T Consensus 201 ~~l~~ia~~~g~t~aqval~w~l~~~--~v~i~g~~~~~~l~en~~a~~~~L~~e~~~~l~~l~~~ 264 (276)
T 3f7j_A 201 EVLTQIAEKHNKSVAQVILRWDLQHG--VVTIPKSIKEHRIIENADIFDFELSQEDMDKIDALNKD 264 (276)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCSHHHHHHHTCCSSCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CEEeeCCCCHHHHHHHHhhCCCCCCHHHHHHHHhhccC
Confidence 56889999999999999999999998 46999999999999999999999999999999999754
No 24
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=99.50 E-value=8.6e-14 Score=104.69 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++.+.
T Consensus 231 ~~~l~~ia~~~g~s~aqvaL~w~l~~~--~~vI~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 295 (317)
T 1qwk_A 231 DQNVLALAEKTHKTPAQVLLRYALDRG--CAILPKSIQENRIKENFEVFDFSLTEEDIAKLEESKNS 295 (317)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHTT--CEEECCCCSHHHHHHHHCCSSCCCCHHHHHHHTTTCCC
T ss_pred cHHHHHHHHHHCcCHHHHHHHHHHhCC--CeEEeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHHhhc
Confidence 367889999999999999999999998 58999999999999999999999999999999998754
No 25
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=99.49 E-value=1.2e-13 Score=103.77 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.+++|++++++.|+++...
T Consensus 231 ~~~l~~ia~~~g~s~aqvaL~w~l~~~--~~~I~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~ 295 (316)
T 1us0_A 231 DPRIKAIAAKHNKTTAQVLIRFPMQRN--LVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRN 295 (316)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCCHHHHHHHHCCSSCCCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHCC--CEEEeCCCCHHHHHHHhhhcCCCCCHHHHHHHHhhccC
Confidence 367889999999999999999999998 58999999999999999999999999999999998754
No 26
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=99.48 E-value=1.1e-13 Score=104.16 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ .+||||+++++||++|+++.++.|++++++.|+++.+.
T Consensus 235 ~~l~~iA~~~g~t~aqvaL~w~l~~~--~v~I~gs~~~~~l~en~~a~~~~Ls~ee~~~l~~l~~~ 298 (310)
T 3b3e_A 235 EVLTQIAEKHNKSVAQVILRWDLQHG--VVTIPKSIKEHRIIENADIFDFELSQEDMDKIDALNKD 298 (310)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCSHHHHHHHTCCSSCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC--CeEEeCCCCHHHHHHHHHhccCCCCHHHHHHHHhhhhC
Confidence 56889999999999999999999998 45999999999999999999999999999999999754
No 27
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=99.48 E-value=1.5e-13 Score=102.18 Aligned_cols=64 Identities=17% Similarity=0.387 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
..++++|+++|+|++|+||+|+++++ ++||||+++++|+++|+++.++.|++++++.|+++...
T Consensus 213 ~~l~~ia~~~g~t~aqvaL~w~l~~~--~~~i~g~~~~~~l~en~~~~~~~L~~ee~~~i~~l~~~ 276 (288)
T 4f40_A 213 PILSAIGAKYNKTAAQVILRWNIQKN--LITIPKSVHRERIEENADIFDFELGAEDVMSIDALNTN 276 (288)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCSSHHHHHHHHCCSSCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CeEeeCCCCHHHHHHHhhhcCCCCCHHHHHHHHhhccC
Confidence 46789999999999999999999999 78999999999999999999999999999999999753
No 28
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=99.48 E-value=8.3e-14 Score=104.91 Aligned_cols=63 Identities=25% Similarity=0.415 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIAS 88 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~ 88 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++..
T Consensus 243 ~~l~~iA~~~g~t~aqvaL~w~l~~~--~~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~~~ 305 (322)
T 1mi3_A 243 DTIKAIAAKYNKTPAEVLLRWAAQRG--IAVIPKSNLPERLVQNRSFNTFDLTKEDFEEIAKLDI 305 (322)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTT--CEECCCCCSHHHHHHTTSCCSSCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CEEEcCCCCHHHHHHHHhhcCCCcCHHHHHHHHhhcc
Confidence 67889999999999999999999998 5899999999999999999999999999999999864
No 29
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=99.48 E-value=1.3e-13 Score=104.03 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++...
T Consensus 238 ~~~l~~ia~~~g~s~aqvaL~w~l~~~--~~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~ 302 (323)
T 1afs_A 238 DPVLCAIAKKYKQTPALVALRYQLQRG--VVPLIRSFNAKRIKELTQVFEFQLASEDMKALDGLNRN 302 (323)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHHTT--CEEEECCSCHHHHHHHTTTTSCCCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHhCC--CEEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHhhccc
Confidence 467899999999999999999999998 58999999999999999999999999999999998753
No 30
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=99.48 E-value=1.6e-13 Score=103.51 Aligned_cols=65 Identities=25% Similarity=0.415 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 23 FERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
.+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++.+.
T Consensus 241 ~~~l~~ia~~~g~s~aqvaL~w~l~~~--~~~I~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~ 305 (326)
T 3buv_A 241 DALLNSLGKRYNKTAAQIVLRFNIQRG--VVVIPKSFNLERIKENFQIFDFSLTEEEMKDIEALNKN 305 (326)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCSHHHHHHHHCCSSCCCCHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhccC
Confidence 467889999999999999999999998 68999999999999999999999999999999998754
No 31
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=99.47 E-value=9.3e-14 Score=103.35 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESI 86 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~ 86 (118)
+.++++|+++|+|++|+||+|+++++ .+||||+++++|+++|+++.++.|++++++.|+++
T Consensus 222 ~~l~~ia~~~g~t~aqvaL~w~l~~~--~v~I~g~~~~~~l~en~~a~~~~Ls~ee~~~i~~l 282 (283)
T 3o0k_A 222 PTLKSIAEKHAKSVAQIILRWHIETG--NIVIPKSITPARIKENFDIFDFTLNGTDHDAITKL 282 (283)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHT--CEECCCCCSHHHHHHHHCCSSCCCCHHHHHHHHTT
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHCC--CEEEeCCCCHHHHHHHHHhCCCCCCHHHHHHHhcc
Confidence 57889999999999999999999998 45899999999999999999999999999999875
No 32
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=99.47 E-value=8.5e-14 Score=104.84 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcC-CCCCHHHHHHHHhhhcC
Q 033498 20 KKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALS-VKLTPEEIAELESIASA 89 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~-~~Ls~e~~~~l~~~~~~ 89 (118)
..+.+.++++|+ |+|++|+||+|++++|.+++||||+++++||++|+++.+ +.|++++++.|+++...
T Consensus 241 ~~~~~~l~~ia~--g~s~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~Ls~ee~~~l~~~~~~ 309 (317)
T 1ynp_A 241 DELKLLRESLPT--DRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKA 309 (317)
T ss_dssp HHHHHHHHHSCS--SSCHHHHHHHHHHTSTTEEEEECCCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHHhh
Confidence 345677888887 999999999999999999999999999999999999999 99999999999999754
No 33
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=99.46 E-value=2.3e-13 Score=101.11 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++...
T Consensus 204 ~~l~~ia~~~g~s~aqvaL~w~l~~~--~~~I~g~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 267 (281)
T 1vbj_A 204 ARLKAIGGKYGKTAAQVMLRWEIQAG--VITIPKSGNEARIKENGNIFDFELTAEDIQVIDGMNAG 267 (281)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTT--CEECCBCSCHHHHHHHHCCSSCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHCC--CEEecCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Confidence 46889999999999999999999996 48999999999999999999999999999999998754
No 34
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=99.45 E-value=2.1e-13 Score=102.14 Aligned_cols=64 Identities=27% Similarity=0.532 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++...
T Consensus 214 ~~l~~ia~~~g~s~aqvaL~w~l~~~--v~vI~g~~~~~~l~enl~a~~~~Ls~e~~~~l~~~~~~ 277 (298)
T 1vp5_A 214 GVLRSIAEKYGKTVAQVILRWLTQKG--IVAIPKTVRRERMKENISIFDFELTQEDMEKIATLDEG 277 (298)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCCCSCHHHHHHHHCCSSCCCCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Confidence 46889999999999999999999997 48999999999999999999999999999999999764
No 35
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=99.45 E-value=2e-13 Score=101.13 Aligned_cols=64 Identities=28% Similarity=0.461 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ + +||||+++++|+++|+++.++.|++++++.|+++...
T Consensus 201 ~~l~~ia~~~g~s~aqvaL~w~l~~~-v-~~I~g~~~~~~l~en~~~~~~~L~~~~~~~l~~~~~~ 264 (278)
T 1hw6_A 201 EPVTAAAAAHGKTPAQAVLRWHLQKG-F-VVFPKSVRRERLEENLDVFDFDLTDTEIAAIDAMDPG 264 (278)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT-C-BBCCCCCSHHHHHHHHCCSSCCCCHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHCC-C-EEEcCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcc
Confidence 46889999999999999999999995 4 8999999999999999999999999999999998754
No 36
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=99.45 E-value=2.7e-13 Score=101.47 Aligned_cols=64 Identities=22% Similarity=0.452 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++...
T Consensus 221 ~~l~~ia~~~g~s~aqvaL~w~l~~~--v~vI~g~~~~~~l~enl~a~~~~Ls~e~~~~l~~~~~~ 284 (296)
T 1mzr_A 221 KVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQG 284 (296)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHTT--CEECCBCCCHHHHHHTTCCSSCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CEEEeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhhc
Confidence 46889999999999999999999995 47999999999999999999999999999999998754
No 37
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Probab=99.44 E-value=1.9e-13 Score=103.39 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.++.|++++++.|+++...
T Consensus 239 ~~l~~ia~~~g~s~aqvaL~w~l~~~--~~vI~g~~~~~~l~en~~~~~~~L~~e~~~~l~~~~~~ 302 (331)
T 1s1p_A 239 PVLCALAKKHKRTPALIALRYQLQRG--VVVLAKSYNEQRIRQNVQVFEFQLTAEDMKAIDGLDRN 302 (331)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHTT--CEEEEECCSHHHHHHHGGGGGCCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CEEeeCCCCHHHHHHHhhhcCCCcCHHHHHHHHHHhcC
Confidence 67889999999999999999999998 58999999999999999999999999999999998753
No 38
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=99.41 E-value=2.7e-13 Score=103.37 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
+.++++|+++|+|++|+||+|+++++ ++||||+++++||++|+++.+++|++++++.|+++.+.
T Consensus 252 ~~l~~iA~~~g~s~aqvaL~w~l~~~--~~vI~gs~~~~~l~eNl~a~~~~Ls~ee~~~l~~l~~~ 315 (344)
T 2bgs_A 252 PVVEKVANKLNKTPGQVLIKWALQRG--TSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDE 315 (344)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHT--CEECCBCSSHHHHHHTTCCSSCCCCHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CeEEECCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Confidence 56889999999999999999999998 58999999999999999999999999999999998764
No 39
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=99.34 E-value=5.9e-13 Score=100.90 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCHHHHHH-----HHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCCCcCCCCC
Q 033498 23 FERVNELAVKKGCTRSQLAL-----AWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIASADAVRGHRY 97 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL-----~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~~~~~~~~ 97 (118)
.+.++++|+++|+|++|+|| +|+++ + ++||||+++++||++|+++.+++|++++++.|+++.+.. +.||
T Consensus 248 ~~~l~~iA~~~g~s~aqvaLaw~~~~w~l~-~--~~vI~gs~~~~~l~en~~a~~~~Ls~ee~~~l~~l~~~~---~~r~ 321 (334)
T 3krb_A 248 CKTLKAIADAKGTSPHCVALAWHVKKWNTS-M--YSVIPKSQTPARIEANFKCTEVQLSDDDMDAINNIHLNK---RIRF 321 (334)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHSCST-T--EEECCBCSSHHHHHHHGGGGGCCCCHHHHHHHHHHHHHC---CCCC
T ss_pred cHHHHHHHHHhCcCHHHhHHhhHhhhhhcC-C--eEEeeCCCCHHHHHHHHhhcCCCCCHHHHHHHHHhhcCC---Cccc
Confidence 47889999999999999999 77777 3 789999999999999999999999999999999998642 3576
Q ss_pred CCCC
Q 033498 98 GGVT 101 (118)
Q Consensus 98 ~~~~ 101 (118)
..+.
T Consensus 322 ~~~~ 325 (334)
T 3krb_A 322 CDPA 325 (334)
T ss_dssp SCHH
T ss_pred CCCH
Confidence 6554
No 40
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=99.06 E-value=4.6e-11 Score=89.05 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=40.9
Q ss_pred HHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHH
Q 033498 30 AVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPE 78 (118)
Q Consensus 30 a~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e 78 (118)
+.++|+|++|+||+|++++|.+++||||+++++||+||+++.++.||++
T Consensus 244 ~~~~g~t~aqvaL~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~Ls~~ 292 (292)
T 4exb_A 244 CLGAGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAAQALKKA 292 (292)
T ss_dssp -----CCHHHHHHHHHHHSTTCCEEEECCCCHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHHhhccCCCC
Confidence 4568999999999999999999999999999999999999999888874
No 41
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=73.86 E-value=4.3 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCccchHhhHHHHHHHHHHHHHhCCCHHHHH
Q 033498 11 FQPENLEHNKKLFERVNELAVKKGCTRSQLA 41 (118)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlA 41 (118)
|.|..+.....++..+..+++|||+++.++.
T Consensus 119 ~DP~rL~~ie~RL~~l~~L~RKyg~~~eell 149 (175)
T 4abx_A 119 ADPEALDRVEARLSALSKLKNKYGPTLEDVV 149 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 5677888999999999999999999988763
No 42
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=70.98 E-value=13 Score=21.73 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCC-CCcHHHHHHHHhhc
Q 033498 21 KLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPG-TTKIENLNQNIKAL 71 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G-~~~~~ql~en~~a~ 71 (118)
+....|+..|+.+|.|..+.....+-.. ..-+| ..+.+.+....+.+
T Consensus 12 ev~~~L~~rAa~~G~S~~~ylr~~Le~~----a~~~~~~~~~~~l~r~~~~~ 59 (73)
T 3h87_C 12 DVLASLDAIAARLGLSRTEYIRRRLAQD----AQTARVTVTAADLRRLRGAV 59 (73)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH----HTSCCCCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH----hcCCcccccHHHHHHHHHHH
Confidence 4677899999999999999988887552 22345 66788887776555
No 43
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.34 E-value=9.7 Score=20.50 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCCccchHhhHHHHHH-------HHHHHHHhCCCHHHHHHHHHHc
Q 033498 10 RFQPENLEHNKKLFER-------VNELAVKKGCTRSQLALAWVHH 47 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~-------l~~ia~~~g~s~aqlAL~w~l~ 47 (118)
.|+++...+....++. +.++|.++|++.. ....|+..
T Consensus 5 ~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~-tl~~W~~~ 48 (59)
T 2glo_A 5 IFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRR-QIQKWLQC 48 (59)
T ss_dssp CCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHH-HHHHHHTT
T ss_pred cCCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHH-HHHHHHHH
Confidence 4555444444444443 7889999999765 45677643
No 44
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=70.15 E-value=8.8 Score=19.36 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH
Q 033498 20 KKLFERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL~w 44 (118)
.+.++.|.++|++.|+|.+++.-..
T Consensus 11 ~~l~~~Ld~~a~~~g~srS~~ir~a 35 (45)
T 2cpg_A 11 ESVLENLEKMAREMGLSKSAMISVA 35 (45)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3577889999999999998765443
No 45
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=65.87 E-value=13 Score=22.40 Aligned_cols=40 Identities=28% Similarity=0.540 Sum_probs=26.8
Q ss_pred CCCCCccchHhhHHHH-----------HHHHHHHHHhCCCHHHHHHHHHHcC
Q 033498 8 LPRFQPENLEHNKKLF-----------ERVNELAVKKGCTRSQLALAWVHHQ 48 (118)
Q Consensus 8 ~~~~~~~~~~~~~~~~-----------~~l~~ia~~~g~s~aqlAL~w~l~~ 48 (118)
.+.|+++.....+..+ ..+.++|.++|+++.+ ..+|+...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~t-l~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPET-LRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHH-HHHHHHHH
Confidence 3456665554554433 3577899999998764 57888764
No 46
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=63.83 E-value=14 Score=19.35 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Q 033498 20 KKLFERVNELAVKKGCTRSQLALA 43 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL~ 43 (118)
-+..+.|..+|+..|+|.+++.-.
T Consensus 18 ~el~~~l~~~a~~~g~s~s~~ir~ 41 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNLTLSDVCRL 41 (55)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 457788999999999999876544
No 47
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=62.47 E-value=11 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=20.7
Q ss_pred hHhhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 033498 16 LEHNKKLFERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 16 ~~~~~~~~~~l~~ia~~~g~s~aqlAL~w 44 (118)
.......-+.|+.+-++.|+|..++|-.-
T Consensus 13 ~~~~~~~~~~l~~~r~~~glsq~elA~~~ 41 (83)
T 2a6c_A 13 MKMRSQLLIVLQEHLRNSGLTQFKAAELL 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444566777888888899988888764
No 48
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=60.94 E-value=14 Score=23.05 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLALAWVH 46 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~w~l 46 (118)
...+.|+.+|++-|+|+++++=..+.
T Consensus 8 slY~~LkelAe~EGvSvSav~RkLL~ 33 (106)
T 4hv0_A 8 EVYEFLKKKAKEEGTSVPAVIRKILK 33 (106)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46788999999999999998876654
No 49
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=60.03 E-value=12 Score=19.68 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLAL 42 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL 42 (118)
++.+.|+.+|+..|+|.+++.-
T Consensus 13 ~l~~~l~~lA~~~~rs~s~lir 34 (52)
T 2gpe_A 13 ATRERIKSAATRIDRTPHWLIK 34 (52)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 5778899999999999987643
No 50
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=56.60 E-value=20 Score=21.26 Aligned_cols=33 Identities=9% Similarity=0.196 Sum_probs=28.5
Q ss_pred CcHHHHHHHHhhcCCCCCHHHHHHHHhhhcCCC
Q 033498 59 TKIENLNQNIKALSVKLTPEEIAELESIASADA 91 (118)
Q Consensus 59 ~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~~ 91 (118)
.+.++|.+.++.+++..+++.++.+.++-..+.
T Consensus 3 vs~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~ 35 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYG 35 (78)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSC
T ss_pred cCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Confidence 578999999999999999999999988876543
No 51
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.73 E-value=21 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLALAWVH 46 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~w~l 46 (118)
++++++.++|..|+++..+++-.|+.
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmA 70 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIA 70 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57899999999999999999988875
No 52
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=53.23 E-value=17 Score=19.91 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLA 41 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlA 41 (118)
++.+.|+.+|++.|+|.+.+.
T Consensus 13 el~~rL~~lA~~~~rs~s~li 33 (58)
T 2ay0_A 13 ATRERIKSAATRIDRTPHWLI 33 (58)
T ss_dssp HHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 567889999999999998654
No 53
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=51.68 E-value=21 Score=17.86 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.0
Q ss_pred cchHhhHHHHHHHHHHHHHhCCCHHH
Q 033498 14 ENLEHNKKLFERVNELAVKKGCTRSQ 39 (118)
Q Consensus 14 ~~~~~~~~~~~~l~~ia~~~g~s~aq 39 (118)
.|..++.+.++.+.++.+++|+....
T Consensus 7 ~W~~EN~~ai~~~N~~ve~~Gl~~d~ 32 (36)
T 3hpw_C 7 RWKAENQEGMAEVARFIEMNGSFADE 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45689999999999999999987653
No 54
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=50.94 E-value=33 Score=19.61 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=32.8
Q ss_pred HhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCC
Q 033498 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLT 76 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls 76 (118)
...++......++|+..|+|...+ -.|+...+ || ..+....-.+.+..++
T Consensus 4 ~~ai~~~G~~~~lA~~lGVs~~aV-s~W~~g~~-----iP----~~~~~~Ie~~T~G~vk 53 (71)
T 2hin_A 4 EELVRHFGDVEKAAVGVGVTPGAV-YQWLQAGE-----IP----PLRQSDIEVRTAYKLK 53 (71)
T ss_dssp HHHHHHHSSHHHHHHHHTSCHHHH-HHHHHHTS-----CC----HHHHHHHHHHTTTSSC
T ss_pred HHHHHHHCCHHHHHHHHCCCHHHH-HHHHhCCC-----CC----HHHHHHHHHHhCCcch
Confidence 344555555689999999999876 78986532 33 3444455555566677
No 55
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=49.71 E-value=32 Score=19.11 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCC
Q 033498 26 VNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKL 75 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~L 75 (118)
++++|+..|+|.+.+.- +++.+.. ..-+...+.+++.+.++.++...
T Consensus 3 ~~diA~~aGVS~sTVSr--vLng~~~-~~~vs~et~~rI~~aa~~lgY~p 49 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASY--VINGKAK-QYRVSDKTVEKVMAVVREHNYHP 49 (65)
T ss_dssp HHHHHHHHTSCHHHHHH--HHHTCTT-TTTCTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCcCHHHHHH--HHcCCCC-CCCCCHHHHHHHHHHHHHhCCCc
Confidence 57899999999886554 3443320 01245667788888877776643
No 56
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=48.86 E-value=36 Score=19.83 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHH
Q 033498 20 KKLFERVNELAVKKGCTRSQLAL 42 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL 42 (118)
-++...|+.+|...|+|++++.-
T Consensus 43 ~~lh~rlK~~Aa~~g~Smsdvvr 65 (76)
T 1p94_A 43 EEKHTRFKAACARKGTSITDVVN 65 (76)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 35677899999999999998773
No 57
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=46.76 E-value=32 Score=19.12 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHH
Q 033498 18 HNKKLFERVNELAVKKGCTRSQLALA 43 (118)
Q Consensus 18 ~~~~~~~~l~~ia~~~g~s~aqlAL~ 43 (118)
......+.++.+-++.|.|..++|-.
T Consensus 9 ~~~~l~~~l~~~r~~~gltq~~lA~~ 34 (80)
T 3kz3_A 9 DARRLKAIWEKKKNELGLSYESVADK 34 (80)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33344455556566667666666654
No 58
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=44.09 E-value=34 Score=17.77 Aligned_cols=27 Identities=19% Similarity=-0.043 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 033498 20 KKLFERVNELAVKKGCTRSQLALAWVH 46 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL~w~l 46 (118)
-+-.+.|+..|+..|++.++.+..-++
T Consensus 24 ~eE~~~l~~~A~~~g~s~SeyiR~~~l 50 (51)
T 2ba3_A 24 PVEDETIRKKAEDSGLTVSAYIRNAAL 50 (51)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 445677889999999999988776554
No 59
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=44.02 E-value=31 Score=20.58 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLALAWV 45 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~w~ 45 (118)
+.-+.|+.+|...|+|+-+++.-.+
T Consensus 11 ~qH~rLKalAa~qG~SInqli~E~l 35 (83)
T 2an7_A 11 QQHQSLKALAALQGKTIKQYALERL 35 (83)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3567889999999999999998864
No 60
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=43.13 E-value=36 Score=19.02 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCC
Q 033498 25 RVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVK 74 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~ 74 (118)
.++++|+..|+|.+.+.. +++.+. -+...+.+++.+.++.+++.
T Consensus 11 t~~diA~~aGVS~sTVSr--~ln~~~----~vs~~t~~rV~~~a~~lgY~ 54 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSR--ALMNPD----KVSQATRNRVEKAAREVGYL 54 (67)
T ss_dssp CHHHHHHHTTCCHHHHHH--TTTCCC----CSCHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHCCCHHHHHH--HHcCCC----CCCHHHHHHHHHHHHHhCCC
Confidence 378999999999886654 444432 23455667777777776654
No 61
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=43.06 E-value=28 Score=23.38 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=41.9
Q ss_pred cccCCCCCCCCccchHhhHHHHHHHHHHHHHhCCCH---HHHHHHHHHcCCCCceecCCCCcHHHHHHHH
Q 033498 2 ILDMSLLPRFQPENLEHNKKLFERVNELAVKKGCTR---SQLALAWVHHQGDDVCPIPGTTKIENLNQNI 68 (118)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~---aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~ 68 (118)
-+.+.+.|.|......-+.++.+...++-..+|.|+ |.++|+-++.-. ++..--..+.+++...+
T Consensus 21 ylG~dg~PIYsD~f~rLN~eV~~~~~~Ly~~~G~t~EeEA~LCLaLLmGYn--atiyd~geke~~~Q~vL 88 (162)
T 4epz_A 21 YLDTNGSPIYSDEFCRLNKEVLTRSDSLFSEQSSDIEEEGNLCLALLMGYN--ATIYDNGDKERKKQVIL 88 (162)
T ss_dssp TC------CCCHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH--HCSCCCSCHHHHHHHHH
T ss_pred hcCCCCCeeechHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcc--chhhhCccHHHHHHHHH
Confidence 356788899988777888888888888888899998 678888887654 33344444444444433
No 62
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=41.78 E-value=15 Score=20.15 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Q 033498 22 LFERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 22 ~~~~l~~ia~~~g~s~aqlAL~w 44 (118)
..+.|+.+-++.|+|..++|-.-
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~ 30 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLA 30 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 34455666666677776666543
No 63
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=40.26 E-value=25 Score=17.51 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCHHHHH
Q 033498 25 RVNELAVKKGCTRSQLA 41 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlA 41 (118)
.|..||++||++..++.
T Consensus 12 tl~~Ia~~~~~~~~~l~ 28 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVM 28 (48)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred cHHHHHHHHCcCHHHHH
Confidence 35678999999987764
No 64
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=38.56 E-value=32 Score=20.48 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=28.1
Q ss_pred cCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhcC
Q 033498 55 IPGTTKIENLNQNIKALSVKLTPEEIAELESIASA 89 (118)
Q Consensus 55 I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~ 89 (118)
=+|.++..++.|.+.- -.|+.+++..|.+++..
T Consensus 33 PpgVnTW~qI~el~qk--k~i~~~~m~iik~iy~~ 65 (81)
T 2ko4_A 33 PPNINTWQQVTALAQQ--KLLTPQDMEAAKEVYKI 65 (81)
T ss_dssp CTTTCBHHHHHHHHTT--TSSCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 4699999999999864 46999999999998764
No 65
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=38.17 E-value=57 Score=18.73 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=12.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 033498 26 VNELAVKKGCTRSQLALAWVH 46 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~w~l 46 (118)
+.++|+++|++.+. ..+|+.
T Consensus 41 ~~~iA~~~gIs~sT-l~rW~k 60 (87)
T 2elh_A 41 KASVARDIGVPEST-LRGWCK 60 (87)
T ss_dssp HHHHHHHHTCCHHH-HHHHHH
T ss_pred HHHHHHHHCcCHHH-HHHHHH
Confidence 45677777776654 355653
No 66
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=37.93 E-value=43 Score=19.98 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCH--HHHHHHHHHcCCCC
Q 033498 26 VNELAVKKGCTR--SQLALAWVHHQGDD 51 (118)
Q Consensus 26 l~~ia~~~g~s~--aqlAL~w~l~~~~v 51 (118)
++++++..|.+. ..+||.|+.+...+
T Consensus 25 ~~el~k~t~l~d~el~lAIGWLaREdKI 52 (82)
T 2l02_A 25 IPELARKVNLSVESTALAVGWLARENKV 52 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCce
Confidence 567888888777 47899999988754
No 67
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=37.84 E-value=93 Score=21.08 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHhhhcCC--CcCCCCCCCCCCCCCCCCCCCCCCCC
Q 033498 61 IENLNQNIKALSVKLTPEEIAELESIASAD--AVRGHRYGGVTPTYEDSETPPLSSWK 116 (118)
Q Consensus 61 ~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (118)
.+++.+....++-.++++.++.|++.+... .++|+.-+...-.+.....-+|+..|
T Consensus 90 ~~e~~~~a~~lEh~~s~~~~~~l~~~l~~p~~~Phg~~Ip~~~~~~~~~~~~~L~~l~ 147 (214)
T 3hrs_A 90 TEEIHEEAEVLEHTVSDHFVERLDQLLDYPKACPHGGTIPAKGELLVEKHKLTLEEAK 147 (214)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHTTCCSBCTTSCBCCCTTSCCCCSCCCBSTTCC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhCCCCCCcCcCCcCCCCCCcccccccChhhcC
Confidence 455555555556678888989988877532 23444444333334444555666655
No 68
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=37.59 E-value=65 Score=19.16 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=36.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 033498 27 NELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESI 86 (118)
Q Consensus 27 ~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~ 86 (118)
+.+|+..|++.+++. +|-... .+++...+.++++..-++++.++..-
T Consensus 28 ~~vAe~~GvdeStIS-R~k~~~------------~~~~~~lLa~Lglkvv~~e~~~~~k~ 74 (83)
T 1zs4_A 28 EKTAEAVGVDKSQIS-RWKRDW------------IPKFSMLLAVLEWGVVDDDMARLARQ 74 (83)
T ss_dssp HHHHHHHTSCHHHHH-HHHHHT------------HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHh-hhhhhH------------HHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 467888999999887 554421 67888888999999988888887654
No 69
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=37.17 E-value=86 Score=22.66 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCH---HHHHHHHHHcCCCCceec-----------CCCCcHHHHHHHHhhc
Q 033498 23 FERVNELAVKKGCTR---SQLALAWVHHQGDDVCPI-----------PGTTKIENLNQNIKAL 71 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~---aqlAL~w~l~~~~v~~~I-----------~G~~~~~ql~en~~a~ 71 (118)
.+.+..+++..|+++ .-++|+|.++-+..++.+ .|+.++++|+.-+..+
T Consensus 91 ~dG~~~~~~DLgv~ped~~~Lvla~~l~a~~~~g~ftr~ef~~G~~~l~~dsi~~lk~~l~~l 153 (270)
T 3bq3_A 91 IDSLVKFIEELGYNLEDLATLCLAHLLGYKKLEEPLKREDFLSTWFMQGCSTISDMQECIKTL 153 (270)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTSCCCHHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HhhHHHHHHHcCCChhhHHHHHHHHHcCCCccCceeeHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 467888999999886 688999999877541222 3677777777666544
No 70
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=35.70 E-value=72 Score=20.94 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhhc
Q 033498 25 RVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIAS 88 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~~ 88 (118)
.+.....+++++..+++.= +=..+.+.+.++-.+...+..+++++++.|-.+..
T Consensus 92 ~l~e~L~~~~L~~~E~a~L----------~NL~P~t~dEar~lipsl~~r~sdEeLe~ILd~l~ 145 (152)
T 2c35_A 92 SVRSLLLQKKLHKFELACL----------ANLCPETAEESKALIPSLEGRFEDEELQQILDDIQ 145 (152)
T ss_dssp HHHHHHHTSSCCHHHHHHH----------HHHCCSSHHHHHHHCGGGTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHh----------ccCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 3333444556666554421 11234577777777777777788888877766654
No 71
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=34.66 E-value=18 Score=21.36 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCHHHHHHH
Q 033498 25 RVNELAVKKGCTRSQLALA 43 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~ 43 (118)
.|+.+-++.|+|..++|-+
T Consensus 28 rLk~lR~~~glTq~eLA~~ 46 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREA 46 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 4455555666666666654
No 72
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=34.10 E-value=29 Score=24.54 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCH---HHHHHHHHHcCCCCceec-----------CCCCcHHHHHHHHhhcCCCCC-HHHHHHHH
Q 033498 23 FERVNELAVKKGCTR---SQLALAWVHHQGDDVCPI-----------PGTTKIENLNQNIKALSVKLT-PEEIAELE 84 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~---aqlAL~w~l~~~~v~~~I-----------~G~~~~~ql~en~~a~~~~Ls-~e~~~~l~ 84 (118)
.+.+..+++..|+++ .-++|+|.++-+.. ..| .|+.++++++..+..+.-.|+ ++.++.+-
T Consensus 25 ~eGi~~l~~DLgv~ped~~~LvLAw~l~A~~m-g~ftr~eF~~G~~~l~~dsi~~lk~~l~~L~~~l~d~~~Fk~~Y 100 (221)
T 4gba_A 25 EEGMERFCNDLCVDPTEFRVLLLAWKFQAATM-CKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLY 100 (221)
T ss_dssp HHHHHHHHHHTTCCTTSHHHHHHHHHTTCCST-TCEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHhCCCcc-CcCcHHHHHHHHHHhCcCCHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 467788999999876 68899999987743 122 388888888877765544443 33344443
No 73
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=34.07 E-value=50 Score=19.13 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHH
Q 033498 20 KKLFERVNELAVKKGCTRSQLAL 42 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL 42 (118)
-+.++.|+.+|+..|.|.+++.-
T Consensus 18 del~~~Ld~la~~~g~srselir 40 (80)
T 2k5j_A 18 NEVIKQLDDLEVQRNLPRADLLR 40 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHH
Confidence 34678889999999999987654
No 74
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=33.23 E-value=23 Score=18.69 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=8.1
Q ss_pred HHHHHHHhCCCHHHHHHH
Q 033498 26 VNELAVKKGCTRSQLALA 43 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~ 43 (118)
|+.+-++.|+|..++|-.
T Consensus 10 l~~~r~~~g~s~~~lA~~ 27 (68)
T 2r1j_L 10 IRARRKKLKIRQAALGKM 27 (68)
T ss_dssp HHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 344444445554444433
No 75
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=31.74 E-value=63 Score=18.48 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLALAWV 45 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~w~ 45 (118)
++.+.|+..|++.|.|+.+....-+
T Consensus 29 eL~~~L~~~A~~~grSlNaeIv~~L 53 (69)
T 3qoq_A 29 GMREQIAEVARSHHRSMNSEIIARL 53 (69)
T ss_dssp THHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4667889999999999987666543
No 76
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.53 E-value=38 Score=19.02 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 033498 24 ERVNELAVKKGCTRSQLAL 42 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL 42 (118)
+.|..||++||++..+++-
T Consensus 24 DTL~~IA~~~~~~~~~l~~ 42 (77)
T 2djp_A 24 DTLAGLALKYGVTMEQIKR 42 (77)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHH
Confidence 4467799999999887643
No 77
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=31.13 E-value=62 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHHHHHhCC-CH--HHHHHHHHHcCCCC
Q 033498 26 VNELAVKKGC-TR--SQLALAWVHHQGDD 51 (118)
Q Consensus 26 l~~ia~~~g~-s~--aqlAL~w~l~~~~v 51 (118)
++++++..|. +. ..+||.|+.+...+
T Consensus 27 ~~el~k~t~l~~d~el~lAiGWLaREdKI 55 (77)
T 2l01_A 27 QKQIKKATKLKADKDFFLGLGWLLREDKV 55 (77)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhcCce
Confidence 5677888787 55 57899999987754
No 78
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.77 E-value=40 Score=16.15 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=12.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 033498 26 VNELAVKKGCTRSQLALAWVH 46 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~w~l 46 (118)
..+||+.+|++...+ -+|+.
T Consensus 24 ~~~IA~~lgis~~Tv-~~~~~ 43 (51)
T 1tc3_C 24 LHEMSRKISRSRHCI-RVYLK 43 (51)
T ss_dssp HHHHHHHHTCCHHHH-HHHHH
T ss_pred HHHHHHHHCcCHHHH-HHHHh
Confidence 457788888877654 34544
No 79
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=30.43 E-value=61 Score=21.60 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=42.0
Q ss_pred CccchHhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 12 QPENLEHN-KKLFERVNELAVKKGCTRSQLALAWVHHQGDD-VCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 12 ~~~~~~~~-~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v-~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
.+.|..-. .++-+.+-++|+ .|.+++|+-+--=-+++-. +-.|.|..=.+-|++| .+.-.++++.+..|....
T Consensus 24 ~P~W~~~~~eeVe~~I~klak-kG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~--glapeiPEDL~~LikKAv 98 (153)
T 2xzm_O 24 SPKWLHMTPSTVVDLSVKLAK-KGLTPSQIGVILRDQHGIPQVRFLTGQKILRILKKN--GCAPQLPEDLYFLIKKAL 98 (153)
T ss_dssp CCSSCCCCHHHHHHHHHHHHH-TTCCHHHHHHHHHHSSCCSCHHHHHSSCHHHHHHHT--TCCCSSCHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHH-CCCCHHHhhhHHhhcCCCCCeeeeccchHHHHHHHc--CCCCCCcHHHHHHHHHHH
Confidence 34454333 334455666775 7999999877643344411 1234466555555554 223378888887777654
No 80
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.70 E-value=68 Score=20.19 Aligned_cols=24 Identities=4% Similarity=0.127 Sum_probs=12.0
Q ss_pred CcHHHHHHHHhhcCC----CCCHHHHHH
Q 033498 59 TKIENLNQNIKALSV----KLTPEEIAE 82 (118)
Q Consensus 59 ~~~~ql~en~~a~~~----~Ls~e~~~~ 82 (118)
.+.+.|.+.++.++. .|+.+++..
T Consensus 82 ~~~~~l~~aF~~fD~d~~G~I~~~el~~ 109 (153)
T 3i5g_B 82 DPEDALRNAFSMFDEDGQGFIPEDYLKD 109 (153)
T ss_dssp CCHHHHHHHHHTTCSSCSSCCCHHHHHH
T ss_pred ccHHHHHHHHhccccCCCCeEeHHHHHH
Confidence 344555555555533 455555444
No 81
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=29.58 E-value=20 Score=17.02 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHH
Q 033498 23 FERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w 44 (118)
++.+..+-+..+.+.-.++|.|
T Consensus 6 LdLl~~lh~~~~~~ikk~~lgW 27 (28)
T 2ajj_A 6 LDLIYSLHKQINRGLKKIVLGW 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666666777788888887
No 82
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=29.08 E-value=73 Score=21.87 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=31.9
Q ss_pred HhCCCHHHHHHHHHHcCCCCceecCCCC--cHHHHHHHHhhc
Q 033498 32 KKGCTRSQLALAWVHHQGDDVCPIPGTT--KIENLNQNIKAL 71 (118)
Q Consensus 32 ~~g~s~aqlAL~w~l~~~~v~~~I~G~~--~~~ql~en~~a~ 71 (118)
+...|=.++||.|++.++.-.++|.|+. +.+|.-.|+...
T Consensus 72 eKD~TD~e~Al~~a~~~~~~~I~i~Ga~GgR~DH~lani~ll 113 (212)
T 3l8m_A 72 EKDDTDLALGIDQAVKRGYRNIDVYGATGGRLDHFMGALQIL 113 (212)
T ss_dssp --CBCHHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHCCCCEEEEEcCCCCchhHHHHHHHHH
Confidence 3456778999999999987778888885 899998888754
No 83
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.68 E-value=33 Score=20.36 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 57 GTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 57 G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
|.-+.+.+...++..+..+++++++.|-..+
T Consensus 51 G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 51 GFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp SCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5557888888888888888888877765554
No 84
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=27.14 E-value=61 Score=21.56 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=42.1
Q ss_pred CccchHhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 12 QPENLEHN-KKLFERVNELAVKKGCTRSQLALAWVHHQGDD-VCPIPGTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 12 ~~~~~~~~-~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v-~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
.+.|..-. .++.+.+-++|+ .|.+++|+-+--=-+++-. +-.+.|..=.+-|++| ...-.++++.+..|....
T Consensus 22 ~P~W~~~~~eeVe~~I~klak-kG~tpSqIG~iLRD~~GIp~Vk~vtG~kI~rILk~~--glapeiPEDL~~LikKAv 96 (151)
T 3u5c_N 22 APAWFKLSSESVIEQIVKYAR-KGLTPSQIGVLLRDAHGVTQARVITGNKIMRILKSN--GLAPEIPEDLYYLIKKAV 96 (151)
T ss_dssp CCSSCCSCHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCSCHHHHSSSCHHHHHHHT--TCCCSSCHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHH-CCCCHHHhhhHHhccCCCCCeeeecccHHHHHHHhC--CCCCCCcHHHHHHHHHHH
Confidence 34454323 344455667775 7999999877654455311 1245566544444444 233478888887776554
No 85
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=26.87 E-value=33 Score=18.48 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=8.0
Q ss_pred HHHHHHHhCCCHHHHHHH
Q 033498 26 VNELAVKKGCTRSQLALA 43 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~ 43 (118)
|+.+-++.|+|..++|-.
T Consensus 10 l~~~r~~~gls~~~lA~~ 27 (76)
T 1adr_A 10 IRARRKKLKIRQAALGKM 27 (76)
T ss_dssp HHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 334444445554444433
No 86
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.67 E-value=58 Score=17.30 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH
Q 033498 20 KKLFERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 20 ~~~~~~l~~ia~~~g~s~aqlAL~w 44 (118)
....+.|+.+-++.|+|..++|-.-
T Consensus 12 ~~~~~~l~~~r~~~g~s~~~lA~~~ 36 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLS 36 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455667777777888888877654
No 87
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=25.74 E-value=90 Score=21.90 Aligned_cols=45 Identities=7% Similarity=0.097 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCC
Q 033498 26 VNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLT 76 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls 76 (118)
++++|++.|+|.+.+... +++.. -+...+.+++.+.++..+..-+
T Consensus 5 i~dvA~~agVS~~TVSrv--ln~~~----~vs~~tr~rV~~aa~~lgY~pn 49 (332)
T 2hsg_A 5 IYDVAREASVSMATVSRV--VNGNP----NVKPSTRKKVLETIERLGYRPN 49 (332)
T ss_dssp HHHHHHHTTSCHHHHHHH--HTTCT----TSCHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHhCCCHHHHHHH--HcCCC----CCCHHHHHHHHHHHHHHCCCcC
Confidence 678899999998866654 44432 2455677777777776665433
No 88
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=25.58 E-value=1.6e+02 Score=20.11 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=17.2
Q ss_pred CCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 57 GTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 57 G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
.+.+.+.++..+......+++++++.|-.+.
T Consensus 150 ~PeTadEaraLIpSle~rlsdEeLeeILd~L 180 (187)
T 1y14_A 150 ACDTADEAKTLIPSLNNKISDDELERILKEL 180 (187)
T ss_dssp CCSSHHHHHHHSGGGTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 3445555555555555556666665555444
No 89
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=25.28 E-value=59 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Q 033498 22 LFERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 22 ~~~~l~~ia~~~g~s~aqlAL~w 44 (118)
..+.|++||++.|+|+.+++-..
T Consensus 38 FW~~L~eIA~~~g~tv~~Lia~I 60 (125)
T 3kk4_A 38 FWDVLEEIAARDGMRVTQLIERL 60 (125)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 45678999999999999988775
No 90
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=24.69 E-value=79 Score=22.62 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCC
Q 033498 25 RVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVK 74 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~ 74 (118)
.++++|++.|+|.+.+... +++. .-++..+.+++.+.++..+..
T Consensus 11 Ti~diA~~aGVS~~TVSrv--Ln~~----~~Vs~~tr~rV~~~a~~lgY~ 54 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNA--YNRP----EQLSAELRQRILDTAEDMGYL 54 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHH--HHCG----GGSCHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHhCCCHHHHHHH--HCCC----CCCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999977765 3332 134566777777777766654
No 91
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Probab=24.68 E-value=63 Score=25.86 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=57.2
Q ss_pred HhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCC-cHHHHHHHHhhcCCCCCHHHHHHHHhhhcCC
Q 033498 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTT-KIENLNQNIKALSVKLTPEEIAELESIASAD 90 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~-~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~ 90 (118)
+....+.+.++++-+++|++ .+..-|+.+.....-+++|.. +.+.|+..++.-+-.+++..+-....+...+
T Consensus 218 e~ve~ir~DIr~Fk~~~~ld--rvVVlwtAsTE~~~~~~~g~~~t~~~l~~ai~~~~~eispS~~YA~AAl~aG~ 290 (533)
T 1p1j_A 218 THLQRIRRDIQNFKEENALD--KVIVLWTANTERYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGV 290 (533)
T ss_dssp HHHHHHHHHHHHHHHHTTCS--CEEEEECSCCCCCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCC--eEEEEeCcCccCCCCCccccccCHHHHHHHHhcCCccCChHHHHHHHHHhcCC
Confidence 44455666778888889988 467778888887777788866 9999999999877789999988888887544
No 92
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.63 E-value=54 Score=19.00 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCCCccchHhhHHHH-H----HHHHHHHHhCCCHHHHHHHHHHcC
Q 033498 9 PRFQPENLEHNKKLF-E----RVNELAVKKGCTRSQLALAWVHHQ 48 (118)
Q Consensus 9 ~~~~~~~~~~~~~~~-~----~l~~ia~~~g~s~aqlAL~w~l~~ 48 (118)
..|++......+..+ . .+.++|.++|++.+ ...+|+...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~-tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRV-TLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHH-HHHHHHHHH
Confidence 345555444454444 1 37799999999875 457888644
No 93
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=23.36 E-value=59 Score=26.04 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=58.2
Q ss_pred HhhHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCC-cHHHHHHHHhhcCCCCCHHHHHHHHhhhcCC
Q 033498 17 EHNKKLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTT-KIENLNQNIKALSVKLTPEEIAELESIASAD 90 (118)
Q Consensus 17 ~~~~~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~-~~~ql~en~~a~~~~Ls~e~~~~l~~~~~~~ 90 (118)
+....+.+.++++.+++|++ .+..-|+.+.....-+++|.. +.+.|+..++.-+-.+++..+-....+...+
T Consensus 222 e~ve~ir~DIr~Fk~~~~ld--rvVVlwtAsTE~~~~~~~g~~~t~~~L~~ai~~~~~eisaS~~YA~AAl~aG~ 294 (537)
T 1vko_A 222 EHLEHIRADIRKFKQEHELE--CVIVLWTANTERYTDVRQGLNATADEIMESIRVNEDEVSPSNIFAVASILEGA 294 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTCS--EEEEEECSCCCCCCCCCTTTTSSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCC--eEEEEeCCCCcCCCCCccccccCHHHHHHHHhcCCccCChHHHHHHHHHhcCC
Confidence 44556677888999999988 467779999887777888866 9999999999877789999988888776543
No 94
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=22.92 E-value=61 Score=19.53 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Q 033498 25 RVNELAVKKGCTRSQLALAWVHHQ 48 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~~ 48 (118)
.+.++|.+||++.+ ....|...-
T Consensus 51 s~~e~arry~Is~s-~i~~W~r~~ 73 (95)
T 2jrt_A 51 TEREALDRYSLSEE-EFALWRSAV 73 (95)
T ss_dssp CHHHHHHHTTCCHH-HHHHHHHHT
T ss_pred CHHHHHHHhCCCHH-HHHHHHHHH
Confidence 36688889999755 456787654
No 95
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.72 E-value=98 Score=16.51 Aligned_cols=25 Identities=36% Similarity=0.291 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQ 48 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~ 48 (118)
.....||...|++..||-.-|....
T Consensus 34 ~~r~~La~~~~L~~~qV~~WFqNrR 58 (64)
T 1du6_A 34 EAKEELAKKCGITVSQVSNWFGNKR 58 (64)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456899999999999998876653
No 96
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.68 E-value=70 Score=20.29 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 57 GTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 57 G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
|.-+.+.|+..+..++..|+++++..|-...
T Consensus 100 G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~ 130 (159)
T 3i5g_C 100 GLISSAEIRNVLKMLGERITEDQCNDIFTFC 130 (159)
T ss_dssp SEECHHHHHHHHHHSSSCCCHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 5567888888888888889999887776544
No 97
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=22.50 E-value=77 Score=15.21 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHh
Q 033498 21 KLFERVNELAVKK 33 (118)
Q Consensus 21 ~~~~~l~~ia~~~ 33 (118)
.+.++|+.||++.
T Consensus 6 aiaqelkaiakel 18 (35)
T 3r46_A 6 AIAQELKAIAKEL 18 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456677777664
No 98
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=22.37 E-value=1.2e+02 Score=20.08 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCCCHHHHHHHHh
Q 033498 26 VNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKLTPEEIAELES 85 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~Ls~e~~~~l~~ 85 (118)
..+||++.|+|..-++-...-++. -+.++.+...+.+ .|++++...|..
T Consensus 29 we~IAe~iG~S~v~vtaa~lGQ~~---------ls~e~A~kLa~~L--gL~~e~~~~l~~ 77 (156)
T 1dw9_A 29 FAEIADGTGLAEAFVTAALLGQQA---------LPADAARLVGAKL--DLDEDSILLLQM 77 (156)
T ss_dssp HHHHHTTSSSCHHHHHHHHTTSSC---------CCHHHHHHHHHHT--TCCHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC---------CCHHHHHHHHHHh--CcCHHHHHHHhc
Confidence 345677777777665555544443 2456666666555 588888666543
No 99
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=22.28 E-value=76 Score=20.72 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCC---cHHHHHHHHhhcCCC
Q 033498 21 KLFERVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTT---KIENLNQNIKALSVK 74 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~---~~~ql~en~~a~~~~ 74 (118)
.+-+.|+.+-++.|+|..++|-+--++...+.-..-|-+ +.+.+....+++++.
T Consensus 10 ~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~ 66 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTS 66 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCC
Confidence 344566666666777777766554333222222222222 455566655555543
No 100
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.27 E-value=75 Score=22.51 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCC
Q 033498 25 RVNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSV 73 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~ 73 (118)
.++++|+..|+|.+.+... +++.. -+...+.+++.+.++..+.
T Consensus 12 ti~diA~~agVS~~TVSr~--Ln~~~----~vs~~tr~rV~~~~~~lgY 54 (344)
T 3kjx_A 12 TLRDVSEASGVSEMTVSRV--LRNRG----DVSDATRARVLAAAKELGY 54 (344)
T ss_dssp CHHHHHHHHCCCSHHHHHH--HTTCS----CCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHH--HcCCC----CCCHHHHHHHHHHHHHhCC
Confidence 4789999999999977765 44432 2455566777776665544
No 101
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=22.07 E-value=98 Score=16.27 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHH 47 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~ 47 (118)
.....+|...|++..||-.-|...
T Consensus 29 ~~r~~La~~~gl~~~qV~~WFqNr 52 (60)
T 1k61_A 29 KGLENLMKNTSLSRIQIKNWVSNR 52 (60)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 345689999999999998877553
No 102
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=21.93 E-value=1.3e+02 Score=21.96 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCCceecC
Q 033498 24 ERVNELAVKKGCTRSQLALAWVHHQGDDVCPIP 56 (118)
Q Consensus 24 ~~l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~ 56 (118)
..+..+|+.+|+|..+++.++..-.+.-..+|+
T Consensus 162 ~~I~~LA~~FgVS~eav~~RL~~l~~~p~~~vv 194 (301)
T 3dte_A 162 RALAELARRADVSATSALYALAERTAPPVIYAV 194 (301)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTCCSCEEEEE
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCEEEEE
Confidence 468899999999999999998876654443333
No 103
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=21.93 E-value=62 Score=17.82 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHH
Q 033498 19 NKKLFERVNELAVKKGCTRSQLALAW 44 (118)
Q Consensus 19 ~~~~~~~l~~ia~~~g~s~aqlAL~w 44 (118)
...+-+.|+.+-++.|+|..++|-.-
T Consensus 12 ~~~~~~~l~~~R~~~gltq~elA~~~ 37 (83)
T 3f6w_A 12 YQALLDLLLEARSAAGITQKELAARL 37 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34455666777777777777777654
No 104
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=21.86 E-value=1.2e+02 Score=20.96 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=31.6
Q ss_pred hCCCHHHHHHHHHHcCCCCceecCCCC--cHHHHHHHHhhc
Q 033498 33 KGCTRSQLALAWVHHQGDDVCPIPGTT--KIENLNQNIKAL 71 (118)
Q Consensus 33 ~g~s~aqlAL~w~l~~~~v~~~I~G~~--~~~ql~en~~a~ 71 (118)
...|-.++||.++..++.-.++|.|+. +.+|.-.|+...
T Consensus 76 KD~TD~e~Al~~a~~~g~~~I~i~Ga~GGR~DH~lani~lL 116 (223)
T 3k94_A 76 KDKTDMEIALDWAVEQTARCIRLFGATGGRLDHLFGNVELL 116 (223)
T ss_dssp TTBCHHHHHHHHHHTTCCSEEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCchhHHHHHHHHH
Confidence 356778999999999887778888884 889988888654
No 105
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.68 E-value=1.4e+02 Score=20.97 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCCceecCCCCcHHHHHHHHhhcCCCC
Q 033498 26 VNELAVKKGCTRSQLALAWVHHQGDDVCPIPGTTKIENLNQNIKALSVKL 75 (118)
Q Consensus 26 l~~ia~~~g~s~aqlAL~w~l~~~~v~~~I~G~~~~~ql~en~~a~~~~L 75 (118)
++++|++.|+|.+.+.... +++. -+...+.+++.+.++..+..-
T Consensus 3 i~diA~~agVS~~TVSrvL--n~~~----~vs~~tr~rV~~~a~~lgY~p 46 (340)
T 1qpz_A 3 IKDVAKRANVSTTTVSHVI--NKTR----FVAEETRNAVWAAIKELHYSP 46 (340)
T ss_dssp HHHHHHHHTSCHHHHHHHH--HTCS----CCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCHHHHHHHH--cCcC----CCCHHHHHHHHHHHHHhCCCC
Confidence 6788888898888776553 3331 234556777777766666543
No 106
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=21.52 E-value=37 Score=18.96 Aligned_cols=14 Identities=50% Similarity=0.624 Sum_probs=7.5
Q ss_pred HHHHHHhCCCHHHH
Q 033498 27 NELAVKKGCTRSQL 40 (118)
Q Consensus 27 ~~ia~~~g~s~aql 40 (118)
.++|+..|++...+
T Consensus 27 ~elA~~~gis~~~i 40 (78)
T 3qq6_A 27 SELAEKAGVAKSYL 40 (78)
T ss_dssp HHHHHHHTCCHHHH
T ss_pred HHHHHHHCcCHHHH
Confidence 35555566655543
No 107
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=21.18 E-value=72 Score=16.46 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 57 GTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 57 G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
|.-+.+.+...+......++++++..+-..+
T Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (71)
T 2b1u_A 21 GHITVDELRRAMAGLGQPLPQEELDAMIREA 51 (71)
T ss_dssp SEEEHHHHHHHGGGTTCSSCHHHHHHHHHHC
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 5557788888888888888988877765554
No 108
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=20.87 E-value=1e+02 Score=18.69 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 033498 23 FERVNELAVKKGCTRSQLALAWV 45 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~w~ 45 (118)
++++..+.++++.|..|+++-+-
T Consensus 45 v~efn~ll~~~~Ls~~Ql~lIrd 67 (91)
T 2kz5_A 45 VDDFNELLARYPLTESQLALVRD 67 (91)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 46788888899999999887653
No 109
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.83 E-value=55 Score=15.93 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=8.3
Q ss_pred HHHHHHHhCCCHHH
Q 033498 26 VNELAVKKGCTRSQ 39 (118)
Q Consensus 26 l~~ia~~~g~s~aq 39 (118)
+.++|+.+|++.+.
T Consensus 24 ~~~ia~~lgvs~~T 37 (52)
T 1jko_C 24 RQQLAIIFGIGVST 37 (52)
T ss_dssp HHHHHHTTSCCHHH
T ss_pred HHHHHHHHCCCHHH
Confidence 45666666666553
No 110
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.80 E-value=76 Score=16.10 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=6.6
Q ss_pred HHHHHHhCCCHHH
Q 033498 27 NELAVKKGCTRSQ 39 (118)
Q Consensus 27 ~~ia~~~g~s~aq 39 (118)
.++|+..|+|...
T Consensus 35 ~eIA~~lgis~~T 47 (55)
T 2x48_A 35 QQIANALGVSERK 47 (55)
T ss_dssp HHHHHHHTSCHHH
T ss_pred HHHHHHHCcCHHH
Confidence 3455555555543
No 111
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.75 E-value=1.1e+02 Score=16.18 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHH
Q 033498 21 KLFERVNELAVKKGCTRSQLALA 43 (118)
Q Consensus 21 ~~~~~l~~ia~~~g~s~aqlAL~ 43 (118)
++.+.++..|+..|.|+.+....
T Consensus 17 eL~~~l~~~A~~~grS~N~~i~~ 39 (53)
T 1baz_A 17 EVLDLVRKVAEENGRSVNSEIYQ 39 (53)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 46677889999999999765543
No 112
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=20.73 E-value=1.3e+02 Score=17.18 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Q 033498 25 RVNELAVKKGCTRSQLALAWVHH 47 (118)
Q Consensus 25 ~l~~ia~~~g~s~aqlAL~w~l~ 47 (118)
.-..||...|++..||-.-|...
T Consensus 39 ~r~~LA~~~gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 39 EKQMLSEKTNLSLLQISNWFINA 61 (83)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHhhHHhhhh
Confidence 45678999999999999988765
No 113
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=20.41 E-value=1.2e+02 Score=17.18 Aligned_cols=31 Identities=19% Similarity=0.062 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 57 GTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 57 G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
|.-+.+.+...+......++++++..+-..+
T Consensus 39 G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~ 69 (105)
T 1wlz_A 39 NTISREEFRAICNRRVQILTDEQFDRLWNEM 69 (105)
T ss_dssp SCBCHHHHHHHHHHHTCCCCHHHHHHHHTTS
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 5567888888888888888888877665544
No 114
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.18 E-value=1.2e+02 Score=16.41 Aligned_cols=19 Identities=0% Similarity=0.043 Sum_probs=10.2
Q ss_pred cHHHHHHHHhhcCCCCCHHHH
Q 033498 60 KIENLNQNIKALSVKLTPEEI 80 (118)
Q Consensus 60 ~~~ql~en~~a~~~~Ls~e~~ 80 (118)
+.+.+.....+++ ++.+++
T Consensus 43 ~~~~l~~ia~~l~--v~~~~l 61 (77)
T 2k9q_A 43 VVVKYIAFLRSKG--VDLNAL 61 (77)
T ss_dssp HHHHHHHHHHHTT--CCHHHH
T ss_pred CHHHHHHHHHHhC--cCHHHH
Confidence 4556666666655 444443
No 115
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=20.04 E-value=51 Score=18.91 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHH
Q 033498 23 FERVNELAVKKGCTRSQLALA 43 (118)
Q Consensus 23 ~~~l~~ia~~~g~s~aqlAL~ 43 (118)
.+.|+.+-++.|+|..++|-.
T Consensus 11 ~~~lk~~r~~~glsq~~lA~~ 31 (94)
T 2kpj_A 11 SENLNSYIAKSEKTQLEIAKS 31 (94)
T ss_dssp HHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 344455555555555555544
No 116
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=20.02 E-value=1.2e+02 Score=21.06 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=30.5
Q ss_pred hCCCHHHHHHHHHHcCCCCceecCCCC--cHHHHHHHHhh
Q 033498 33 KGCTRSQLALAWVHHQGDDVCPIPGTT--KIENLNQNIKA 70 (118)
Q Consensus 33 ~g~s~aqlAL~w~l~~~~v~~~I~G~~--~~~ql~en~~a 70 (118)
...|-.++||.|+..++.-.++|.|+. +.+|.-.|+..
T Consensus 77 KD~TD~e~Al~~a~~~g~~~I~i~Ga~GgR~DH~lani~l 116 (222)
T 3lm8_A 77 KDQTDLDLALDWALEKQPDIIQIFGITGGRADHFLGNIQL 116 (222)
T ss_dssp SSSCHHHHHHHHHHHHCCSEEEEESCCCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCchhHHHHHHHH
Confidence 356778999999998877678888875 88888888764
No 117
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.01 E-value=1.2e+02 Score=16.34 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 033498 57 GTTKIENLNQNIKALSVKLTPEEIAELESIA 87 (118)
Q Consensus 57 G~~~~~ql~en~~a~~~~Ls~e~~~~l~~~~ 87 (118)
|.-+.+++...+...+..++++++..+-..+
T Consensus 29 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 29 NKLTAEELGTVMRALGANPTKQKISEIVKDY 59 (85)
T ss_dssp SEEEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3446677777777776777777766665544
Done!