BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033499
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q218N7|PURQ_RHOPB Phosphoribosylformylglycinamidine synthase 1 OS=Rhodopseudomonas
palustris (strain BisB18) GN=purQ PE=3 SV=1
Length = 233
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 35 NDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSG 85
+DTP T N IRV A GN + + +G+G VL C SG
Sbjct: 123 SDTPFTRGYNAGQVIRVPVAHGEGNYEADEETLQRLEGDGRVLYRYCSASG 173
>sp|Q89IB6|PURQ_BRAJA Phosphoribosylformylglycinamidine synthase 1 OS=Bradyrhizobium
japonicum (strain USDA 110) GN=purQ PE=3 SV=1
Length = 233
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 35 NDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGV 86
+DTP T N IRV A GN + + +G G VL C GV
Sbjct: 123 SDTPFTRGYNAGQVIRVPVAHGEGNYEADEETIQRLEGEGRVLYRYCSAEGV 174
>sp|Q74IT7|DNAJ_LACJO Chaperone protein DnaJ OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=dnaJ PE=3 SV=1
Length = 388
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 20 RAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGA---- 75
R+ VD ++ K D T ++ + +I+ K T S VC CDG+GA
Sbjct: 117 RSRVDPTAPQKGQ---DLDYTMTIDFMDAIKGK---KTDITYTRSEVCPTCDGSGAEKGT 170
Query: 76 --VLCSQCKGSGVNAV 89
+ C +C GSGV V
Sbjct: 171 HPITCDKCHGSGVMTV 186
>sp|Q7NBW0|DNAJ_MYCGA Chaperone protein DnaJ OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=dnaJ PE=3 SV=2
Length = 391
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 43 VNRLHSIRVK-AAANNGNTKR----NSVVCADCDGNGA-----VLCSQCKGSG 85
VN +H I++ A NG K V C DC+G+G+ + CS C G G
Sbjct: 129 VNLVHEIKINFLEAANGCIKNVKYTRQVTCPDCNGSGSADGDVITCSDCNGEG 181
>sp|Q044A8|DNAJ_LACGA Chaperone protein DnaJ OS=Lactobacillus gasseri (strain ATCC 33323
/ DSM 20243) GN=dnaJ PE=3 SV=1
Length = 388
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 20 RAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGA---- 75
R+ VD ++ K D T ++ + +I+ K T S VC CDG+GA
Sbjct: 117 RSRVDPTAPQKGQ---DLDYTMTIDFMDAIKGK---KTDITYTRSEVCPTCDGSGAEKGT 170
Query: 76 --VLCSQCKGSGVNAV 89
+ C +C G+GV V
Sbjct: 171 HPITCDKCHGTGVMTV 186
>sp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1
PE=1 SV=1
Length = 154
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 67 CADCDGNGAVLCSQCKGSGVNAVDFFGGQFK 97
C +CDG G++ C+ C+GSGV +FK
Sbjct: 121 CINCDGAGSLTCTTCQGSGVQPRYLDRREFK 151
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 56 NNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQ 95
+N + N+ C C+G GA C C GSG V+ GG+
Sbjct: 76 DNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGE 115
>sp|Q3ST24|PURQ_NITWN Phosphoribosylformylglycinamidine synthase 1 OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=purQ PE=3
SV=1
Length = 233
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 35 NDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSG 85
+DTP T N IRV A GN + +G G VL C SG
Sbjct: 123 SDTPFTRGYNAGQVIRVPVAHGEGNYAADEDTIRRLEGEGRVLYRYCSASG 173
>sp|C6BYN5|DNAJ_DESAD Chaperone protein DnaJ OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=dnaJ PE=3
SV=1
Length = 373
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 53 AAANNGNTKRNSVVCADCDGNGAVL---CSQCKGSG 85
A N R SV C C+G G V+ CS+C+G+G
Sbjct: 172 AVEQNQGFFRISVPCPACNGRGKVITDPCSECRGAG 207
>sp|C0ZB49|DNAJ_BREBN Chaperone protein DnaJ OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=dnaJ PE=3 SV=1
Length = 375
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 63 NSVVCADCDGNGAVL---CSQCKGSG 85
N VC+ C+G G V+ CS C+GSG
Sbjct: 181 NRRVCSTCEGKGKVVKEKCSTCRGSG 206
>sp|O27352|DNAJ_METTH Chaperone protein DnaJ OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=dnaJ PE=3 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 63 NSVVCADCDGNGAVL---CSQCKGSGV 86
N C DC G G V+ CS C G GV
Sbjct: 187 NITTCPDCQGEGTVVEKPCSNCNGKGV 213
>sp|Q1QMU3|PURQ_NITHX Phosphoribosylformylglycinamidine synthase 1 OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=purQ PE=3 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 35 NDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSG 85
+DTP T N IRV A GN + +G G VL C +G
Sbjct: 123 SDTPFTRGYNAGQVIRVPVAHGEGNYAADEETIRRLEGEGRVLYRYCSATG 173
>sp|Q9LCQ4|DNAJ_BRECH Chaperone protein DnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3
SV=1
Length = 375
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 63 NSVVCADCDGNGAVL---CSQCKGSG 85
N VC C+G G V CS C+GSG
Sbjct: 181 NRRVCTTCEGKGKVFKEKCSSCRGSG 206
>sp|Q9U178|UTP11_LEIMA Probable U3 small nucleolar RNA-associated protein 11
OS=Leishmania major GN=L374.02 PE=3 SV=1
Length = 361
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 18 KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANN 57
K R H+ KDH++ + KV RL I+ AA N
Sbjct: 30 KSRQHLGQLEKHKDHVLRAKKRKVKVRRLQEIKRAAAQRN 69
>sp|Q9HJ83|DNAJ_THEAC Chaperone protein DnaJ OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=dnaJ PE=3 SV=1
Length = 365
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 62 RNSVVCADCDGNGA-----VLCSQCKGSG 85
R + +C DC+G GA + C C G+G
Sbjct: 147 RRNAMCPDCNGTGAKNGKLITCPTCNGTG 175
>sp|Q97BG9|DNAJ_THEVO Chaperone protein DnaJ OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=dnaJ PE=3
SV=1
Length = 365
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 62 RNSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAEAKGIC 104
R + +C DC G GA + C C G+G V G F+ C
Sbjct: 147 RRNAICPDCKGTGAKNGKLITCPTCHGTGQQRVVRGQGFFRMVTVTTC 194
>sp|Q316U7|DNAJ_DESDG Chaperone protein DnaJ OS=Desulfovibrio desulfuricans (strain G20)
GN=dnaJ PE=3 SV=1
Length = 375
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 64 SVVCADCDGNGAV------LCSQCKGSG 85
+V C DC G+GA C QC GSG
Sbjct: 146 NVTCPDCSGSGAAPGTQPETCPQCGGSG 173
>sp|Q6GLQ1|SPB5_XENLA Serpin B5 OS=Xenopus laevis GN=serpinb5 PE=2 SV=1
Length = 383
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 1 MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNT 60
+ S+ S + ++ L R +VD+S + K IN T K + L +I +K+
Sbjct: 72 LLSSDISKVISIYSLKLLKRVYVDNSIECKKDFINSTKKPYPL-ELETIDIKSRPEEARC 130
Query: 61 KRNSVVCADCDGN 73
+ NS V DGN
Sbjct: 131 QINSSVKELTDGN 143
>sp|Q9HHB8|DNAJ_HALMT Chaperone protein DnaJ OS=Haloferax mediterranei (strain ATCC 33500
/ DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4)
GN=dnaJ PE=3 SV=1
Length = 384
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 60 TKRNSVVCADCDGNG------AVLCSQCKGSG 85
T R VC +CDG G CS+C GSG
Sbjct: 153 TIRRREVCPECDGEGHPADADVNTCSECNGSG 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,645,883
Number of Sequences: 539616
Number of extensions: 1551278
Number of successful extensions: 4432
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4410
Number of HSP's gapped (non-prelim): 40
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)