Query 033499
Match_columns 118
No_of_seqs 31 out of 33
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 02:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.8 0.00068 1.5E-08 43.7 1.6 44 67-112 1-52 (66)
2 PLN03165 chaperone protein dna 96.5 0.001 2.3E-08 48.5 1.2 33 59-91 36-68 (111)
3 PRK10767 chaperone protein Dna 95.9 0.0036 7.8E-08 51.0 1.2 44 63-110 141-190 (371)
4 PRK14290 chaperone protein Dna 95.4 0.008 1.7E-07 49.2 1.7 34 63-96 148-186 (365)
5 PRK14286 chaperone protein Dna 95.4 0.0082 1.8E-07 49.4 1.6 44 63-110 149-198 (372)
6 PRK14279 chaperone protein Dna 95.1 0.0081 1.8E-07 49.9 0.9 46 63-112 172-223 (392)
7 PRK14296 chaperone protein Dna 95.0 0.013 2.7E-07 48.5 1.6 32 63-94 148-185 (372)
8 PRK14283 chaperone protein Dna 94.9 0.011 2.3E-07 48.7 1.0 47 63-111 145-199 (378)
9 PRK14298 chaperone protein Dna 94.8 0.012 2.6E-07 48.6 1.2 29 63-91 140-174 (377)
10 PLN03165 chaperone protein dna 94.8 0.021 4.5E-07 41.7 2.2 36 62-97 73-108 (111)
11 PRK14294 chaperone protein Dna 94.7 0.015 3.2E-07 47.7 1.4 46 63-112 143-194 (366)
12 PRK14288 chaperone protein Dna 94.7 0.017 3.6E-07 47.6 1.8 45 63-111 139-188 (369)
13 PRK14284 chaperone protein Dna 94.6 0.017 3.6E-07 47.8 1.5 44 63-110 157-206 (391)
14 PRK14300 chaperone protein Dna 94.6 0.018 4E-07 47.3 1.7 45 63-111 144-194 (372)
15 PRK14289 chaperone protein Dna 94.5 0.014 3.1E-07 47.9 0.9 46 63-110 153-206 (386)
16 PRK14278 chaperone protein Dna 94.5 0.023 5E-07 47.0 2.0 46 63-110 138-191 (378)
17 PRK14295 chaperone protein Dna 94.5 0.018 3.9E-07 47.8 1.3 45 63-111 165-215 (389)
18 PRK14301 chaperone protein Dna 94.4 0.019 4.2E-07 47.3 1.4 45 63-111 143-193 (373)
19 PF00684 DnaJ_CXXCXGXG: DnaJ c 94.4 0.029 6.3E-07 36.1 1.9 13 63-75 14-26 (66)
20 PRK14277 chaperone protein Dna 94.2 0.019 4.1E-07 47.4 1.0 46 63-110 154-207 (386)
21 PRK14280 chaperone protein Dna 94.1 0.022 4.9E-07 46.9 1.2 47 63-111 142-196 (376)
22 PRK14276 chaperone protein Dna 94.1 0.022 4.7E-07 47.0 1.1 46 63-110 145-198 (380)
23 PRK14285 chaperone protein Dna 94.0 0.026 5.6E-07 46.4 1.4 44 63-110 145-194 (365)
24 PRK14287 chaperone protein Dna 94.0 0.023 5E-07 46.8 1.1 29 63-91 137-171 (371)
25 PRK14282 chaperone protein Dna 94.0 0.029 6.2E-07 46.0 1.6 28 63-90 151-184 (369)
26 PRK14281 chaperone protein Dna 94.0 0.031 6.7E-07 46.5 1.8 47 63-111 162-215 (397)
27 PRK14297 chaperone protein Dna 93.6 0.035 7.6E-07 45.7 1.4 47 63-111 147-201 (380)
28 COG0484 DnaJ DnaJ-class molecu 93.5 0.039 8.4E-07 47.3 1.6 47 62-111 140-193 (371)
29 PRK14293 chaperone protein Dna 93.0 0.044 9.6E-07 45.0 1.2 25 63-87 142-172 (374)
30 PRK14291 chaperone protein Dna 92.9 0.047 1E-06 45.1 1.2 27 63-89 155-187 (382)
31 TIGR02349 DnaJ_bact chaperone 92.7 0.059 1.3E-06 43.6 1.5 29 63-91 142-176 (354)
32 TIGR02642 phage_xxxx uncharact 92.5 0.059 1.3E-06 42.2 1.2 23 64-86 99-126 (186)
33 PRK14292 chaperone protein Dna 92.3 0.082 1.8E-06 43.2 1.8 47 63-111 138-193 (371)
34 PTZ00037 DnaJ_C chaperone prot 91.6 0.084 1.8E-06 44.9 1.2 24 63-86 149-177 (421)
35 PRK10767 chaperone protein Dna 90.1 0.16 3.5E-06 41.5 1.5 37 64-112 159-206 (371)
36 KOG2813 Predicted molecular ch 89.9 0.21 4.5E-06 43.9 2.1 67 43-111 165-244 (406)
37 PRK14291 chaperone protein Dna 87.9 0.28 6E-06 40.6 1.4 36 64-112 173-219 (382)
38 PRK14287 chaperone protein Dna 85.1 0.47 1E-05 39.2 1.4 36 64-111 155-205 (371)
39 PRK14282 chaperone protein Dna 85.0 0.57 1.2E-05 38.5 1.8 36 64-111 169-219 (369)
40 PRK14293 chaperone protein Dna 84.2 0.57 1.2E-05 38.6 1.5 36 64-111 160-210 (374)
41 PRK14284 chaperone protein Dna 83.7 0.68 1.5E-05 38.4 1.8 37 64-112 175-222 (391)
42 COG0484 DnaJ DnaJ-class molecu 83.3 0.65 1.4E-05 40.0 1.5 11 64-74 159-169 (371)
43 PRK14279 chaperone protein Dna 82.9 0.56 1.2E-05 39.1 1.0 36 64-111 190-236 (392)
44 TIGR02349 DnaJ_bact chaperone 82.2 0.82 1.8E-05 37.0 1.7 37 64-112 160-211 (354)
45 PRK14298 chaperone protein Dna 82.0 0.75 1.6E-05 38.2 1.4 36 65-112 159-209 (377)
46 PRK14294 chaperone protein Dna 81.7 0.84 1.8E-05 37.5 1.6 37 64-112 161-208 (366)
47 PRK14288 chaperone protein Dna 81.4 0.89 1.9E-05 37.6 1.6 37 63-111 155-202 (369)
48 PRK14292 chaperone protein Dna 81.2 1.1 2.3E-05 36.8 2.0 37 64-112 157-208 (371)
49 PRK14290 chaperone protein Dna 80.9 0.84 1.8E-05 37.5 1.3 38 63-112 164-216 (365)
50 PRK14286 chaperone protein Dna 80.9 0.79 1.7E-05 37.9 1.2 36 65-112 168-214 (372)
51 PRK14300 chaperone protein Dna 80.8 0.91 2E-05 37.5 1.5 37 64-112 162-209 (372)
52 PRK14297 chaperone protein Dna 80.6 0.8 1.7E-05 37.8 1.1 36 64-111 165-215 (380)
53 PRK14285 chaperone protein Dna 79.8 0.97 2.1E-05 37.3 1.3 37 64-112 163-210 (365)
54 PTZ00037 DnaJ_C chaperone prot 79.8 1.1 2.4E-05 38.2 1.7 38 64-111 166-218 (421)
55 PRK14278 chaperone protein Dna 79.7 0.97 2.1E-05 37.5 1.3 37 64-112 156-207 (378)
56 PRK14280 chaperone protein Dna 79.6 1.2 2.6E-05 36.8 1.8 37 64-112 160-211 (376)
57 PRK14301 chaperone protein Dna 79.5 1.1 2.3E-05 37.2 1.5 35 65-111 162-207 (373)
58 PRK14296 chaperone protein Dna 79.4 1.1 2.5E-05 37.1 1.7 36 64-111 166-216 (372)
59 PRK14276 chaperone protein Dna 79.0 1.1 2.4E-05 37.1 1.4 37 64-112 163-214 (380)
60 COG1107 Archaea-specific RecJ- 78.7 1.4 3.1E-05 41.2 2.2 50 63-112 52-106 (715)
61 PRK14283 chaperone protein Dna 78.7 1.2 2.5E-05 36.8 1.5 36 64-111 163-213 (378)
62 PRK14289 chaperone protein Dna 78.3 1.3 2.7E-05 36.7 1.6 38 63-112 170-222 (386)
63 KOG2813 Predicted molecular ch 77.8 1.1 2.3E-05 39.6 1.1 23 63-85 233-255 (406)
64 PRK14295 chaperone protein Dna 74.5 1.8 4E-05 36.1 1.6 36 65-112 184-230 (389)
65 PRK14277 chaperone protein Dna 74.5 1.9 4E-05 35.9 1.6 37 64-112 172-223 (386)
66 KOG0712 Molecular chaperone (D 74.4 2.4 5.2E-05 36.2 2.3 33 63-95 126-163 (337)
67 COG1107 Archaea-specific RecJ- 70.7 2.9 6.3E-05 39.2 2.1 45 65-111 3-63 (715)
68 PRK14281 chaperone protein Dna 70.6 2.2 4.8E-05 35.6 1.2 37 64-112 179-230 (397)
69 KOG0712 Molecular chaperone (D 68.3 2.8 6.1E-05 35.8 1.4 25 63-87 169-198 (337)
70 cd03031 GRX_GRX_like Glutaredo 63.8 4.3 9.4E-05 30.2 1.5 24 64-87 99-122 (147)
71 PRK00488 pheS phenylalanyl-tRN 49.2 11 0.00023 32.1 1.7 20 63-85 259-278 (339)
72 TIGR00630 uvra excinuclease AB 46.1 8.5 0.00018 36.3 0.7 25 65-89 737-773 (924)
73 PF03589 Antiterm: Antitermina 45.7 9.2 0.0002 26.9 0.6 28 64-91 5-48 (95)
74 KOG2824 Glutaredoxin-related p 37.7 19 0.00041 30.6 1.4 25 61-85 226-250 (281)
75 PF13719 zinc_ribbon_5: zinc-r 35.8 31 0.00067 20.2 1.7 10 73-82 23-32 (37)
76 PF07092 DUF1356: Protein of u 35.3 24 0.00052 29.1 1.6 24 63-86 26-49 (238)
77 smart00261 FU Furin-like repea 35.1 20 0.00044 20.6 0.9 20 64-83 8-27 (46)
78 PF07092 DUF1356: Protein of u 35.0 16 0.00034 30.2 0.5 19 62-80 36-54 (238)
79 TIGR02098 MJ0042_CXXC MJ0042 f 33.4 37 0.0008 19.2 1.8 7 76-82 26-32 (38)
80 PRK12380 hydrogenase nickel in 33.1 24 0.00052 25.0 1.2 31 59-89 65-100 (113)
81 KOG2824 Glutaredoxin-related p 31.9 28 0.00061 29.6 1.5 22 61-82 259-280 (281)
82 PRK00349 uvrA excinuclease ABC 31.4 26 0.00056 33.3 1.4 13 64-76 738-750 (943)
83 PRK00635 excinuclease ABC subu 30.5 23 0.0005 36.3 0.9 10 65-74 1608-1617(1809)
84 cd00064 FU Furin-like repeats. 30.3 25 0.00054 20.6 0.7 20 66-85 5-24 (49)
85 cd02335 ZZ_ADA2 Zinc finger, Z 28.1 30 0.00064 21.2 0.8 28 63-92 14-41 (49)
86 PHA03035 hypothetical protein; 27.5 21 0.00047 28.1 0.1 16 84-99 93-108 (158)
87 PF14843 GF_recep_IV: Growth f 26.8 68 0.0015 23.0 2.6 41 66-108 5-55 (132)
88 TIGR00100 hypA hydrogenase nic 26.6 38 0.00082 24.0 1.3 31 59-89 65-100 (115)
89 PF10235 Cript: Microtubule-as 25.9 43 0.00093 24.0 1.4 32 63-110 43-78 (90)
90 TIGR00630 uvra excinuclease AB 25.6 33 0.00071 32.6 1.0 33 76-111 737-769 (924)
91 PRK00564 hypA hydrogenase nick 25.0 43 0.00094 23.9 1.3 31 59-89 66-102 (117)
92 smart00105 ArfGap Putative GTP 24.8 26 0.00055 24.4 0.1 19 65-83 4-31 (112)
93 PRK00635 excinuclease ABC subu 23.6 39 0.00084 34.7 1.1 32 77-111 1609-1640(1809)
94 PRK00349 uvrA excinuclease ABC 22.9 42 0.00091 31.9 1.1 35 75-112 738-772 (943)
95 PF08271 TF_Zn_Ribbon: TFIIB z 22.8 55 0.0012 19.3 1.3 9 73-81 17-25 (43)
96 TIGR02533 type_II_gspE general 22.0 44 0.00096 29.0 1.0 9 77-85 414-422 (486)
97 TIGR02538 type_IV_pilB type IV 21.9 47 0.001 29.1 1.2 9 77-85 490-498 (564)
98 PF08792 A2L_zn_ribbon: A2L zi 21.8 72 0.0016 18.7 1.6 10 65-74 4-13 (33)
99 cd02345 ZZ_dah Zinc finger, ZZ 21.8 44 0.00095 20.7 0.7 27 63-91 14-40 (49)
100 PRK03824 hypA hydrogenase nick 21.4 51 0.0011 24.0 1.1 16 60-75 66-81 (135)
101 PF08273 Prim_Zn_Ribbon: Zinc- 21.3 44 0.00096 20.6 0.7 12 71-82 22-33 (40)
102 cd02343 ZZ_EF Zinc finger, ZZ 21.2 34 0.00074 22.0 0.1 26 64-91 14-39 (48)
103 KOG4113 Guanine nucleotide exc 20.8 62 0.0014 24.0 1.4 11 62-72 65-75 (99)
104 PF09526 DUF2387: Probable met 20.5 63 0.0014 21.9 1.3 20 94-115 3-22 (71)
105 COG5347 GTPase-activating prot 20.1 53 0.0011 27.8 1.1 21 63-83 19-48 (319)
No 1
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.81 E-value=0.00068 Score=43.66 Aligned_cols=44 Identities=34% Similarity=0.690 Sum_probs=26.6
Q ss_pred eccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeecccce
Q 033499 67 CADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 67 C~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~~~ 112 (118)
|+.|+|+|+ ..|.+|.|+|+-..-. ..|.|..- ..|-.|.|.-.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~--~~C~~C~G~G~ 52 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQ--QTCPKCGGTGK 52 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEE--EE-TTTSSSSE
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEE--EECCCCcceee
Confidence 677777776 6788888888765544 44555544 66666666543
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.54 E-value=0.001 Score=48.45 Aligned_cols=33 Identities=36% Similarity=0.808 Sum_probs=27.3
Q ss_pred CccccceEeccCCCCCcEecccccCCcccceec
Q 033499 59 NTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDF 91 (118)
Q Consensus 59 ~tKp~sivC~dC~GnGa~~C~QCkG~GVN~~D~ 91 (118)
........|..|+|.|...|..|.|+|+-....
T Consensus 36 ~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~ 68 (111)
T PLN03165 36 AKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL 68 (111)
T ss_pred hhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe
Confidence 445567899999999999999999999877655
No 3
>PRK10767 chaperone protein DnaJ; Provisional
Probab=95.86 E-value=0.0036 Score=51.03 Aligned_cols=44 Identities=30% Similarity=0.675 Sum_probs=28.8
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|+.|+|+|+ ..|.+|.|+|+-.... |.|..- ..|.-|.|+
T Consensus 141 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~--~~C~~C~G~ 190 (371)
T PRK10767 141 TLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ--GFFTVQ--QTCPTCHGR 190 (371)
T ss_pred ecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee--ceEEEE--EeCCCCCCc
Confidence 5678999999995 4799999999765443 444222 344444444
No 4
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.40 E-value=0.008 Score=49.17 Aligned_cols=34 Identities=35% Similarity=0.866 Sum_probs=23.6
Q ss_pred cceEeccCCCCCc-----EecccccCCcccceeccCCee
Q 033499 63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQF 96 (118)
Q Consensus 63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~D~f~G~f 96 (118)
..++|+.|+|+|+ ..|.+|.|+|+-..=...|.|
T Consensus 148 r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~ 186 (365)
T PRK14290 148 RNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFF 186 (365)
T ss_pred ecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeE
Confidence 3567999999886 568899998875444333433
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.36 E-value=0.0082 Score=49.44 Aligned_cols=44 Identities=32% Similarity=0.641 Sum_probs=32.4
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|++|.|.|+ ..|.+|.|+|+-.... |.|.- ...|.-|.|+
T Consensus 149 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~--~~~C~~C~G~ 198 (372)
T PRK14286 149 RLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ--GFFSV--ATTCPTCRGK 198 (372)
T ss_pred ccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe--ceEEE--EEeCCCCCce
Confidence 5778999999996 6799999999866553 55532 2566666665
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.11 E-value=0.0081 Score=49.91 Aligned_cols=46 Identities=30% Similarity=0.652 Sum_probs=32.9
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
..+.|+.|.|+|+ ..|.+|.|+|+-..-. |.|- ....|.-|.|+-.
T Consensus 172 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~--~~~~C~~C~G~G~ 223 (392)
T PRK14279 172 SPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAFG--FSEPCTDCRGTGS 223 (392)
T ss_pred ccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--cceE--EEEecCCCCceeE
Confidence 5678999999997 4699999999866554 4442 2356777766543
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=94.96 E-value=0.013 Score=48.49 Aligned_cols=32 Identities=34% Similarity=0.686 Sum_probs=25.3
Q ss_pred cceEeccCCCCCcE------ecccccCCcccceeccCC
Q 033499 63 NSVVCADCDGNGAV------LCSQCKGSGVNAVDFFGG 94 (118)
Q Consensus 63 ~sivC~dC~GnGa~------~C~QCkG~GVN~~D~f~G 94 (118)
..+.|..|.|+|+. .|..|.|+|+-....-.|
T Consensus 148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g 185 (372)
T PRK14296 148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMG 185 (372)
T ss_pred eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEecc
Confidence 46789999999964 599999999877665333
No 8
>PRK14283 chaperone protein DnaJ; Provisional
Probab=94.90 E-value=0.011 Score=48.66 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=32.9
Q ss_pred cceEeccCCCCCc------EecccccCCcccceecc--CCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f--~G~fKag~~~~CWlc~g~~ 111 (118)
..+.|++|.|.|. ..|.+|.|+|+-...+. .|.+..- -.|+-|.|.-
T Consensus 145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~G 199 (378)
T PRK14283 145 HTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNV--TTCPDCQGEG 199 (378)
T ss_pred eeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEE--EECCCCCccc
Confidence 5678999999885 46999999998766553 3555433 4566665543
No 9
>PRK14298 chaperone protein DnaJ; Provisional
Probab=94.82 E-value=0.012 Score=48.63 Aligned_cols=29 Identities=31% Similarity=0.747 Sum_probs=23.0
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF 91 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~ 91 (118)
..+.|..|.|+|+ ..|++|.|+|+-....
T Consensus 140 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~ 174 (377)
T PRK14298 140 RAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTR 174 (377)
T ss_pred eeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEE
Confidence 4678999999997 5799999999765443
No 10
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=94.79 E-value=0.021 Score=41.71 Aligned_cols=36 Identities=33% Similarity=0.848 Sum_probs=28.8
Q ss_pred ccceEeccCCCCCcEecccccCCcccceeccCCeec
Q 033499 62 RNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFK 97 (118)
Q Consensus 62 p~sivC~dC~GnGa~~C~QCkG~GVN~~D~f~G~fK 97 (118)
.....|+.|+|.|-+.|..|+|.|+-+.-+-+=.||
T Consensus 73 q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~~~~ 108 (111)
T PLN03165 73 KEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRREFK 108 (111)
T ss_pred EEEEECCCCCCcceeeCCCCCCCEEEeeeecccccC
Confidence 357899999999999999999999987655444454
No 11
>PRK14294 chaperone protein DnaJ; Provisional
Probab=94.75 E-value=0.015 Score=47.66 Aligned_cols=46 Identities=30% Similarity=0.629 Sum_probs=30.8
Q ss_pred cceEeccCCCCCcE------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 63 NSVVCADCDGNGAV------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 63 ~sivC~dC~GnGa~------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
..+.|++|.|+|+. .|.+|.|+|+-.... |.|.- ...|..|.|+-.
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--G~~~~--~~~C~~C~G~G~ 194 (366)
T PRK14294 143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ--GFFSI--RTTCPRCRGMGK 194 (366)
T ss_pred ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe--eeEEE--EeeCCCCCCcCe
Confidence 56789999999964 689999998765443 44432 255666665543
No 12
>PRK14288 chaperone protein DnaJ; Provisional
Probab=94.74 E-value=0.017 Score=47.60 Aligned_cols=45 Identities=33% Similarity=0.615 Sum_probs=29.4
Q ss_pred cceEeccCCCCCc-----EecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
....|..|.|+|+ ..|.+|.|+|+-.... |.+.-- ..|.-|.|+-
T Consensus 139 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--g~~~~~--~~C~~C~G~G 188 (369)
T PRK14288 139 YQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ--GFMSFA--QTCGACQGKG 188 (369)
T ss_pred eeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe--ceEEEE--EecCCCCCCc
Confidence 3458999999996 4599999999765543 444222 3566665554
No 13
>PRK14284 chaperone protein DnaJ; Provisional
Probab=94.62 E-value=0.017 Score=47.85 Aligned_cols=44 Identities=32% Similarity=0.645 Sum_probs=27.2
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|+.|.|.|+ ..|.+|.|+|+-..-. |.|..- ..|.-|.|.
T Consensus 157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~--~~C~~C~G~ 206 (391)
T PRK14284 157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GFFSMA--STCPECGGE 206 (391)
T ss_pred eeccCCCCcccccCCCCCCeecCccCCeeEEEEEe--ceEEEE--EECCCCCCC
Confidence 4677888888886 4588888888654332 444322 445555443
No 14
>PRK14300 chaperone protein DnaJ; Provisional
Probab=94.60 E-value=0.018 Score=47.29 Aligned_cols=45 Identities=29% Similarity=0.666 Sum_probs=31.7
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
....|+.|+|+|. ..|++|.|+|.... ..|-|..- ..|+-|.|+-
T Consensus 144 r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~--~~g~~~~~--~~C~~C~G~G 194 (372)
T PRK14300 144 SEVKCDTCHGSGSEKGETVTTCDACSGVGATRM--QQGFFTIE--QACHKCQGNG 194 (372)
T ss_pred eccccCCCCCcccCCCCCCccCCCccCeEEEEE--eeceEEEE--EeCCCCCccc
Confidence 4678999999995 67999999997654 33555432 4666665554
No 15
>PRK14289 chaperone protein DnaJ; Provisional
Probab=94.53 E-value=0.014 Score=47.95 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=31.0
Q ss_pred cceEeccCCCCCc------EecccccCCcccceecc--CCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f--~G~fKag~~~~CWlc~g~ 110 (118)
..+.|+.|+|+|+ ..|.+|.|+|+-....- .|-+.. ...|+.|.|.
T Consensus 153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~--~~~C~~C~G~ 206 (386)
T PRK14289 153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT--QSTCPTCNGE 206 (386)
T ss_pred eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE--EEecCCCCcc
Confidence 5688999999995 57999999998766542 233322 2455555444
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=94.51 E-value=0.023 Score=46.95 Aligned_cols=46 Identities=30% Similarity=0.642 Sum_probs=29.7
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|+.|.|.|+ ..|++|.|+|+-..-. +.|+|..- ..|.-|.|.
T Consensus 138 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~ 191 (378)
T PRK14278 138 TAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTS--RPCPTCRGV 191 (378)
T ss_pred eeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEE--EECCCCCcc
Confidence 5678999999996 4699999999744332 33455322 344444443
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=94.46 E-value=0.018 Score=47.82 Aligned_cols=45 Identities=27% Similarity=0.624 Sum_probs=31.9
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
..++|++|+|.|+ ..|.+|.|+|+-..-. |.|- ....|.-|.|+-
T Consensus 165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~--~~~~C~~C~G~G 215 (389)
T PRK14295 165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFS--LSEPCPDCKGRG 215 (389)
T ss_pred ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceE--EEEecCCCccee
Confidence 5678999999996 5799999999876654 4442 224566665554
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=94.41 E-value=0.019 Score=47.29 Aligned_cols=45 Identities=33% Similarity=0.635 Sum_probs=30.9
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
..+.|+.|+|.|+ ..|.+|.|+|+-.... |.|.- ...|..|.|.-
T Consensus 143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~--~~~C~~C~G~G 193 (373)
T PRK14301 143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ--GFFQI--AVPCPVCRGEG 193 (373)
T ss_pred ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe--eeEEE--EEeCCCCCcee
Confidence 5678999999996 5699999999755443 44433 25566665553
No 19
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=94.37 E-value=0.029 Score=36.05 Aligned_cols=13 Identities=31% Similarity=1.020 Sum_probs=6.4
Q ss_pred cceEeccCCCCCc
Q 033499 63 NSVVCADCDGNGA 75 (118)
Q Consensus 63 ~sivC~dC~GnGa 75 (118)
+...|+.|.|.|.
T Consensus 14 ~~~~C~~C~G~G~ 26 (66)
T PF00684_consen 14 KPKTCPQCNGSGQ 26 (66)
T ss_dssp T-EE-TTSSSSSE
T ss_pred CCcCCcCCCCeeE
Confidence 3446666666664
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.23 E-value=0.019 Score=47.44 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=29.4
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|++|+|.|+ ..|.+|.|+|+-..-. .-|.+..- ..|..|.|+
T Consensus 154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~--~~C~~C~G~ 207 (386)
T PRK14277 154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI--RTCDRCHGE 207 (386)
T ss_pred eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE--EECCCCCcc
Confidence 5678999999996 5699999999754433 22333332 345555443
No 21
>PRK14280 chaperone protein DnaJ; Provisional
Probab=94.12 E-value=0.022 Score=46.87 Aligned_cols=47 Identities=30% Similarity=0.577 Sum_probs=31.8
Q ss_pred cceEeccCCCCCc------EecccccCCcccceecc--CCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f--~G~fKag~~~~CWlc~g~~ 111 (118)
..+.|++|.|+|+ ..|.+|.|+|+=..... -|.+.- ...|+.|.|+-
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~--~~~C~~C~G~G 196 (376)
T PRK14280 142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVN--RQTCPHCNGTG 196 (376)
T ss_pred eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEE--EEEcCCCCCCC
Confidence 5678999999995 56999999997544432 234432 25677666653
No 22
>PRK14276 chaperone protein DnaJ; Provisional
Probab=94.09 E-value=0.022 Score=46.99 Aligned_cols=46 Identities=35% Similarity=0.702 Sum_probs=30.9
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|.+|+|+|+ ..|.+|.|+|+=.... .-|.|..- ..|..|.|.
T Consensus 145 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~--~~C~~C~G~ 198 (380)
T PRK14276 145 REATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQ--VTCDVCHGT 198 (380)
T ss_pred ccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEE--EECCCCCCC
Confidence 5678999999996 5699999999755443 22334322 456666554
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=94.03 E-value=0.026 Score=46.42 Aligned_cols=44 Identities=27% Similarity=0.622 Sum_probs=29.6
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~ 110 (118)
..+.|.+|.|.|+ ..|.+|.|+|+-.. -.|.+.. ...|.-|.|+
T Consensus 145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~--~~G~~~~--~~~C~~C~G~ 194 (365)
T PRK14285 145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ--GGGFFRV--TTTCPKCYGN 194 (365)
T ss_pred ecccCCCCCCcccCCCCCCccCCCccCceeEEe--cCceeEE--eeecCCCCCc
Confidence 4678999999995 46999999997654 2244422 2455555554
No 24
>PRK14287 chaperone protein DnaJ; Provisional
Probab=94.02 E-value=0.023 Score=46.81 Aligned_cols=29 Identities=41% Similarity=0.864 Sum_probs=22.8
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF 91 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~ 91 (118)
..+.|++|.|+|+ ..|.+|.|+|+-.+..
T Consensus 137 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~ 171 (371)
T PRK14287 137 REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQ 171 (371)
T ss_pred eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEE
Confidence 5678999999994 5699999999755443
No 25
>PRK14282 chaperone protein DnaJ; Provisional
Probab=93.99 E-value=0.029 Score=46.03 Aligned_cols=28 Identities=32% Similarity=0.854 Sum_probs=22.6
Q ss_pred cceEeccCCCCCc------EecccccCCccccee
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVD 90 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D 90 (118)
..+.|.+|+|.|+ +.|.+|.|+|+-...
T Consensus 151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 184 (369)
T PRK14282 151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE 184 (369)
T ss_pred ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEE
Confidence 5678999999996 469999999976544
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=93.98 E-value=0.031 Score=46.45 Aligned_cols=47 Identities=30% Similarity=0.588 Sum_probs=30.6
Q ss_pred cceEeccCCCCCc-----EecccccCCcccce--eccCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA-----VLCSQCKGSGVNAV--DFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~--D~f~G~fKag~~~~CWlc~g~~ 111 (118)
..+.|+.|.|.|+ ..|.+|.|+|+-.. -.+.|.|..- ..|..|.|+-
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~G 215 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNI--TACPTCGGEG 215 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEE--EecCCCccee
Confidence 4678999999996 46999999996432 2334555332 4555555543
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=93.59 E-value=0.035 Score=45.71 Aligned_cols=47 Identities=28% Similarity=0.546 Sum_probs=31.8
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec--cCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~~ 111 (118)
..+.|++|.|.|+ ..|.+|.|+|+=.+.. ..|.+.-- ..|.-|.|+-
T Consensus 147 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~--~~C~~C~G~G 201 (380)
T PRK14297 147 RNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVST--TTCDKCGGSG 201 (380)
T ss_pred eeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEE--EeCCCCCCCc
Confidence 5678999999996 5699999999655443 23444332 5666666553
No 28
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.039 Score=47.31 Aligned_cols=47 Identities=34% Similarity=0.689 Sum_probs=35.6
Q ss_pred ccceEeccCCCCCc------EecccccCCcc-cceeccCCeecccccceeeeecccc
Q 033499 62 RNSVVCADCDGNGA------VLCSQCKGSGV-NAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 62 p~sivC~dC~GnGa------~~C~QCkG~GV-N~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
+....|..|.|.|| +.|++|.|+|+ ..+... |.|..- ..|.-|.|.-
T Consensus 140 ~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~--~~C~~C~G~G 193 (371)
T COG0484 140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQ--QTCPTCNGTG 193 (371)
T ss_pred ceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEE--EECCCCccce
Confidence 47889999999976 47999999996 555555 778666 6666666653
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=93.00 E-value=0.044 Score=45.01 Aligned_cols=25 Identities=40% Similarity=0.930 Sum_probs=19.2
Q ss_pred cceEeccCCCCCc------EecccccCCccc
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVN 87 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN 87 (118)
..+.|++|+|.|. ..|.+|.|+|+=
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 172 (374)
T PRK14293 142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQV 172 (374)
T ss_pred ccccCCCCCCcCCCCCCCCeeCCCCCCcceE
Confidence 5678888888886 358888888853
No 30
>PRK14291 chaperone protein DnaJ; Provisional
Probab=92.91 E-value=0.047 Score=45.11 Aligned_cols=27 Identities=37% Similarity=0.786 Sum_probs=19.9
Q ss_pred cceEeccCCCCCc------EecccccCCcccce
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAV 89 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~ 89 (118)
..+.|..|.|.|+ ..|.+|.|+|+-..
T Consensus 155 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 187 (382)
T PRK14291 155 RYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQ 187 (382)
T ss_pred eeccCCCCccccCCCCCCCccCCCCCCceEEEE
Confidence 5678888888884 46888888886433
No 31
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=92.72 E-value=0.059 Score=43.55 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=23.1
Q ss_pred cceEeccCCCCCc------EecccccCCcccceec
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF 91 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~ 91 (118)
..++|..|.|.|+ ..|.+|.|+|+-....
T Consensus 142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~ 176 (354)
T TIGR02349 142 RKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQ 176 (354)
T ss_pred cCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEE
Confidence 5678999999995 5699999999765544
No 32
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=92.53 E-value=0.059 Score=42.20 Aligned_cols=23 Identities=39% Similarity=1.057 Sum_probs=20.7
Q ss_pred ceEeccCCCCCcEe-----cccccCCcc
Q 033499 64 SVVCADCDGNGAVL-----CSQCKGSGV 86 (118)
Q Consensus 64 sivC~dC~GnGa~~-----C~QCkG~GV 86 (118)
+..|+.|.|.|-+. |..|.|+|.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~ 126 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGR 126 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccE
Confidence 78999999999764 999999995
No 33
>PRK14292 chaperone protein DnaJ; Provisional
Probab=92.28 E-value=0.082 Score=43.23 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=29.6
Q ss_pred cceEeccCCCCCc-------EecccccCCcccceec--cCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGA-------VLCSQCKGSGVNAVDF--FGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa-------~~C~QCkG~GVN~~D~--f~G~fKag~~~~CWlc~g~~ 111 (118)
..+.|+.|+|.|. ..|.+|.|+|.-..-. +.|.+..- ..|+.|.|.-
T Consensus 138 r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~--~~C~~C~G~G 193 (371)
T PRK14292 138 RLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQ--QPCPTCRGEG 193 (371)
T ss_pred eeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEe--eecCCCcccc
Confidence 4577999999884 5688888888644322 22554433 5566665543
No 34
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=91.62 E-value=0.084 Score=44.91 Aligned_cols=24 Identities=46% Similarity=1.265 Sum_probs=20.4
Q ss_pred cceEeccCCCCCc-----EecccccCCcc
Q 033499 63 NSVVCADCDGNGA-----VLCSQCKGSGV 86 (118)
Q Consensus 63 ~sivC~dC~GnGa-----~~C~QCkG~GV 86 (118)
..++|++|.|.|+ ..|+.|.|+|+
T Consensus 149 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 149 KDVICANCEGHGGPKDAFVDCKLCNGQGI 177 (421)
T ss_pred ccccccccCCCCCCCCCCccCCCCCCCCe
Confidence 5678999999996 36999999996
No 35
>PRK10767 chaperone protein DnaJ; Provisional
Probab=90.11 E-value=0.16 Score=41.49 Aligned_cols=37 Identities=30% Similarity=0.656 Sum_probs=29.3
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|.+|.|.|.-. +..|.-|.|+..
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 206 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII------------KDPCKKCHGQGR 206 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC------------CCCCCCCCCCce
Confidence 4689999999976 499999999631 256999998764
No 36
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.21 Score=43.91 Aligned_cols=67 Identities=25% Similarity=0.409 Sum_probs=44.7
Q ss_pred cCcceeeEEEeccCCCCccccc---eEeccCCCCCcEecccccCCcccc-----eeccC-----Ceecccccceeeeecc
Q 033499 43 VNRLHSIRVKAAANNGNTKRNS---VVCADCDGNGAVLCSQCKGSGVNA-----VDFFG-----GQFKAEAKGICYAGTA 109 (118)
Q Consensus 43 ~~~~~sl~~KAt~~~~~tKp~s---ivC~dC~GnGa~~C~QCkG~GVN~-----~D~f~-----G~fKag~~~~CWlc~g 109 (118)
.+|+.-+.+-.++ +-.-|+| .-|..|.|.|+..|.-|-|+|-|+ .=|+- -.-|+|..++|.+|-|
T Consensus 165 ~~~gp~mf~~~~~--~~~vphs~~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G 242 (406)
T KOG2813|consen 165 CSRGPGMFSGVAH--PAVVPHSMIVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHG 242 (406)
T ss_pred ccCCCCccccccc--ceeccchHhhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccC
Confidence 3345444444444 2223333 359999999999999999999654 33332 2348888899999988
Q ss_pred cc
Q 033499 110 ME 111 (118)
Q Consensus 110 ~~ 111 (118)
+-
T Consensus 243 ~G 244 (406)
T KOG2813|consen 243 RG 244 (406)
T ss_pred CC
Confidence 64
No 37
>PRK14291 chaperone protein DnaJ; Provisional
Probab=87.94 E-value=0.28 Score=40.63 Aligned_cols=36 Identities=33% Similarity=0.843 Sum_probs=28.7
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
-..|+.|.|.|.+ .|..|.|+|+ + +..|--|.|+..
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~--~-----------~~~C~~C~G~g~ 219 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV--L-----------REPCSKCNGRGL 219 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceE--E-----------ccCCCCCCCCce
Confidence 4679999999975 7999999995 2 256999988653
No 38
>PRK14287 chaperone protein DnaJ; Provisional
Probab=85.08 E-value=0.47 Score=39.24 Aligned_cols=36 Identities=28% Similarity=0.744 Sum_probs=27.6
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|.|.+ .|..|.|+|.-. +..|-+|.|+.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g 205 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII------------KQKCATCGGKG 205 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc------------cccCCCCCCee
Confidence 3579999999853 699999999642 25688888854
No 39
>PRK14282 chaperone protein DnaJ; Provisional
Probab=84.97 E-value=0.57 Score=38.53 Aligned_cols=36 Identities=28% Similarity=0.709 Sum_probs=27.6
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
-..|+.|.|.|.+ .|..|.|.|.-. +..|--|.|+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g 219 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP------------GEYCHECGGSG 219 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC------------CCCCCCCCCce
Confidence 3579999999965 589999998532 35688888865
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=84.18 E-value=0.57 Score=38.60 Aligned_cols=36 Identities=31% Similarity=0.720 Sum_probs=25.9
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|+|.+ .|.+|.|.|.= -+..|.-|.|+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~------------~~~~C~~C~G~g 210 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV------------IEDPCDACGGQG 210 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE------------eccCCCCCCCCc
Confidence 4679999999864 58888888841 125688888754
No 41
>PRK14284 chaperone protein DnaJ; Provisional
Probab=83.71 E-value=0.68 Score=38.45 Aligned_cols=37 Identities=27% Similarity=0.617 Sum_probs=28.8
Q ss_pred ceEeccCCCCCc-----------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa-----------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|. ..|.+|.|+|.-. +..|--|.|+..
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 222 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI------------TDPCSVCRGQGR 222 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc------------CCcCCCCCCcce
Confidence 468999999998 4799999998532 256888988643
No 42
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.27 E-value=0.65 Score=39.99 Aligned_cols=11 Identities=36% Similarity=1.159 Sum_probs=6.3
Q ss_pred ceEeccCCCCC
Q 033499 64 SVVCADCDGNG 74 (118)
Q Consensus 64 sivC~dC~GnG 74 (118)
-..|+.|.|+|
T Consensus 159 ~~tC~tC~G~G 169 (371)
T COG0484 159 PKTCPTCNGSG 169 (371)
T ss_pred CCcCCCCCCcC
Confidence 44566666666
No 43
>PRK14279 chaperone protein DnaJ; Provisional
Probab=82.90 E-value=0.56 Score=39.12 Aligned_cols=36 Identities=28% Similarity=0.792 Sum_probs=28.3
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|.|.+ .|.+|.|+|.-. +..|--|.|+.
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~g 236 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII------------EDPCEECKGTG 236 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe------------CCcCCCCCCCe
Confidence 4679999999975 699999999632 25688888864
No 44
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=82.21 E-value=0.82 Score=37.03 Aligned_cols=37 Identities=27% Similarity=0.608 Sum_probs=24.9
Q ss_pred ceEeccCCCCCc---------------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa---------------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|+|. ..|..|.|.|.=. +..|--|.|+..
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 211 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII------------KEPCSTCKGKGR 211 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec------------CCCCCCCCCCcE
Confidence 467888888884 3588888887421 235777777653
No 45
>PRK14298 chaperone protein DnaJ; Provisional
Probab=81.97 E-value=0.75 Score=38.21 Aligned_cols=36 Identities=31% Similarity=0.682 Sum_probs=27.3
Q ss_pred eEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 65 ivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
..|+.|.|.|.+ .|..|.|+|.-. +..|--|.|+..
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 209 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI------------ESPCPVCSGTGK 209 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc------------CCCCCCCCCccE
Confidence 679999999964 699999999632 245888888654
No 46
>PRK14294 chaperone protein DnaJ; Provisional
Probab=81.66 E-value=0.84 Score=37.51 Aligned_cols=37 Identities=27% Similarity=0.682 Sum_probs=28.0
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|.+|.|.|.-. +..|--|.|+..
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 208 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI------------VSPCKTCHGQGR 208 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec------------CcCCCCCCCceE
Confidence 4689999999964 699999999632 256888888553
No 47
>PRK14288 chaperone protein DnaJ; Provisional
Probab=81.36 E-value=0.89 Score=37.59 Aligned_cols=37 Identities=32% Similarity=0.709 Sum_probs=27.7
Q ss_pred cceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 63 NSVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 63 ~sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
....|+.|.|+|.+ .|.+|.|+|.-. +..|--|.|..
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g 202 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII------------KTPCQACKGKT 202 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc------------cccCccCCCcc
Confidence 34579999999965 599999999632 24588888863
No 48
>PRK14292 chaperone protein DnaJ; Provisional
Probab=81.20 E-value=1.1 Score=36.82 Aligned_cols=37 Identities=30% Similarity=0.662 Sum_probs=28.1
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|..|.|+|.-. +..|--|.|+..
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 208 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII------------TDPCTVCRGRGR 208 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec------------CCCCCCCCCceE
Confidence 4679999999865 499999998641 367888888654
No 49
>PRK14290 chaperone protein DnaJ; Provisional
Probab=80.94 E-value=0.84 Score=37.50 Aligned_cols=38 Identities=24% Similarity=0.617 Sum_probs=28.2
Q ss_pred cceEeccCCCCCc---------------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 63 NSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 63 ~sivC~dC~GnGa---------------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
....|+.|.|.|. ..|.+|.|.|+= .+..|--|.|+..
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~------------~~~~C~~C~G~g~ 216 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI------------PEEKCPRCNGTGT 216 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE------------ccCCCCCCCCcee
Confidence 4567999999995 479999998852 1367888887754
No 50
>PRK14286 chaperone protein DnaJ; Provisional
Probab=80.89 E-value=0.79 Score=37.93 Aligned_cols=36 Identities=31% Similarity=0.812 Sum_probs=25.7
Q ss_pred eEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 65 VVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 65 ivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
..|+.|.|.|.+ .|.+|.|+|.-. +..|--|.|+..
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 214 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI------------SNPCKTCGGQGL 214 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe------------cccCCCCCCCcE
Confidence 679999999865 688888888542 245777777543
No 51
>PRK14300 chaperone protein DnaJ; Provisional
Probab=80.81 E-value=0.91 Score=37.47 Aligned_cols=37 Identities=32% Similarity=0.706 Sum_probs=26.8
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|.+|.|.|.=. +..|--|.|+..
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 209 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII------------KNPCKKCHGMGR 209 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe------------CCCCCCCCCceE
Confidence 4679999999876 588888888431 255777877654
No 52
>PRK14297 chaperone protein DnaJ; Provisional
Probab=80.62 E-value=0.8 Score=37.81 Aligned_cols=36 Identities=28% Similarity=0.707 Sum_probs=26.7
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|.|.+ .|..|.|.|.=. +..|--|.|+.
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g 215 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI------------EDPCNKCHGKG 215 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc------------CCCCCCCCCCe
Confidence 4679999999865 599999988531 24688888754
No 53
>PRK14285 chaperone protein DnaJ; Provisional
Probab=79.81 E-value=0.97 Score=37.31 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=26.7
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|.+|.|+|.-. +..|--|.|+..
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 210 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII------------SNPCKSCKGKGS 210 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc------------CCCCCCCCCCCE
Confidence 3579999998854 688888888531 245888877653
No 54
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=79.76 E-value=1.1 Score=38.23 Aligned_cols=38 Identities=26% Similarity=0.575 Sum_probs=24.8
Q ss_pred ceEeccCCCCCc---------------EecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa---------------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|.|. ..|..|.|+|.-. + ++..|--|.|+.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i--------~--~~~~C~~C~G~g 218 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKII--------P--ESKKCKNCSGKG 218 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceec--------c--ccccCCcCCCcc
Confidence 456888888884 2688888887521 1 125677777754
No 55
>PRK14278 chaperone protein DnaJ; Provisional
Probab=79.66 E-value=0.97 Score=37.47 Aligned_cols=37 Identities=30% Similarity=0.666 Sum_probs=27.5
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|+|.+ .|..|.|+|.=. +..|--|.|+..
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 207 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI------------PDPCHECAGDGR 207 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee------------CCCCCCCCCcee
Confidence 4579999999953 599999998521 256888888753
No 56
>PRK14280 chaperone protein DnaJ; Provisional
Probab=79.59 E-value=1.2 Score=36.80 Aligned_cols=37 Identities=30% Similarity=0.727 Sum_probs=25.9
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|.+|.|+|.=. +..|--|.|+.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 211 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI------------KEKCPTCHGKGK 211 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee------------cCCCCCCCCceE
Confidence 4679999998854 588888888521 245777777553
No 57
>PRK14301 chaperone protein DnaJ; Provisional
Probab=79.53 E-value=1.1 Score=37.21 Aligned_cols=35 Identities=29% Similarity=0.662 Sum_probs=25.7
Q ss_pred eEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 65 VVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 65 ivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
..|+.|.|.|.+ .|.+|.|+|.-. +..|--|.|+.
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g 207 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI------------THPCPKCKGSG 207 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec------------CCCCCCCCCCc
Confidence 579999999864 688898888531 24587887754
No 58
>PRK14296 chaperone protein DnaJ; Provisional
Probab=79.40 E-value=1.1 Score=37.07 Aligned_cols=36 Identities=31% Similarity=0.730 Sum_probs=25.9
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|.|.+ .|..|.|+|.-. +..|--|.|+.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~------------~~~C~~C~G~g 216 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII------------KNKCKNCKGKG 216 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee------------cccccCCCCce
Confidence 3569999999865 688888888542 25577777754
No 59
>PRK14276 chaperone protein DnaJ; Provisional
Probab=78.95 E-value=1.1 Score=37.07 Aligned_cols=37 Identities=30% Similarity=0.766 Sum_probs=25.1
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|+|.+ .|..|.|+|.-. +..|--|.|+..
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 214 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI------------KEPCQTCHGTGH 214 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc------------cCCCCCCCCceE
Confidence 3578999988854 588888887542 245777777543
No 60
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=78.71 E-value=1.4 Score=41.21 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=37.4
Q ss_pred cceEeccCCCCCcE----ecccccCCcccceeccCCe-ecccccceeeeecccce
Q 033499 63 NSVVCADCDGNGAV----LCSQCKGSGVNAVDFFGGQ-FKAEAKGICYAGTAMEL 112 (118)
Q Consensus 63 ~sivC~dC~GnGa~----~C~QCkG~GVN~~D~f~G~-fKag~~~~CWlc~g~~~ 112 (118)
+.+.|+.|+|.|-+ .|..|.|+|=-..+--.|+ +..-...+|.-|+.+..
T Consensus 52 ~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 52 FEIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 57899999999976 6999999995554444444 44434458999998877
No 61
>PRK14283 chaperone protein DnaJ; Provisional
Probab=78.68 E-value=1.2 Score=36.84 Aligned_cols=36 Identities=28% Similarity=0.685 Sum_probs=25.8
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
...|+.|.|.|.+ .|.+|.|+|.=. +..|--|.|+.
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g 213 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV------------EKPCSNCHGKG 213 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec------------CCCCCCCCCce
Confidence 4679999999875 488898888421 25577777754
No 62
>PRK14289 chaperone protein DnaJ; Provisional
Probab=78.27 E-value=1.3 Score=36.65 Aligned_cols=38 Identities=32% Similarity=0.706 Sum_probs=25.3
Q ss_pred cceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 63 NSVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 63 ~sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
....|+.|.|.|.+ .|.+|.|+|+=. +..|--|.|+..
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 222 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------------KKKCKKCGGEGI 222 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------------CcCCCCCCCCcE
Confidence 34668888888765 588888887431 145777777643
No 63
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.80 E-value=1.1 Score=39.60 Aligned_cols=23 Identities=39% Similarity=0.936 Sum_probs=16.3
Q ss_pred cceEeccCCCCCcEecccccCCc
Q 033499 63 NSVVCADCDGNGAVLCSQCKGSG 85 (118)
Q Consensus 63 ~sivC~dC~GnGa~~C~QCkG~G 85 (118)
.+.+|..|.|.|-..|.-|+|.|
T Consensus 233 t~~~C~~C~G~G~~~C~tC~grG 255 (406)
T KOG2813|consen 233 THDLCYMCHGRGIKECHTCKGRG 255 (406)
T ss_pred ccchhhhccCCCcccCCcccCCC
Confidence 45677777777777777777765
No 64
>PRK14295 chaperone protein DnaJ; Provisional
Probab=74.52 E-value=1.8 Score=36.07 Aligned_cols=36 Identities=33% Similarity=0.743 Sum_probs=26.0
Q ss_pred eEeccCCCCCc-----------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 65 VVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 65 ivC~dC~GnGa-----------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
..|+.|.|.|. ..|.+|.|+|.= .+..|--|.|+..
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~~C~~C~G~g~ 230 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLI------------ADDPCLVCKGSGR 230 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEE------------eccCCCCCCCCce
Confidence 67999999986 368888888842 1255888877653
No 65
>PRK14277 chaperone protein DnaJ; Provisional
Probab=74.48 E-value=1.9 Score=35.85 Aligned_cols=37 Identities=30% Similarity=0.676 Sum_probs=27.5
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|.+|.|+|.-. +..|--|.|+..
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 223 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII------------TDPCNKCGGTGR 223 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec------------cCCCCCCCCCcE
Confidence 4679999999865 599999998542 245888888653
No 66
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=74.43 E-value=2.4 Score=36.24 Aligned_cols=33 Identities=33% Similarity=0.834 Sum_probs=22.6
Q ss_pred cceEeccCCCCCc-----EecccccCCcccceeccCCe
Q 033499 63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQ 95 (118)
Q Consensus 63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~~D~f~G~ 95 (118)
...+|+.|+|-|. ..|+.|.|+||-+.=..-|-
T Consensus 126 ~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gP 163 (337)
T KOG0712|consen 126 RNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGP 163 (337)
T ss_pred cCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccc
Confidence 5678888888773 35888888887665544444
No 67
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=70.67 E-value=2.9 Score=39.24 Aligned_cols=45 Identities=29% Similarity=0.660 Sum_probs=29.4
Q ss_pred eEeccCCCCCcE-----ecccccCCcccceeccC----Ceeccc-----c--cceeeeecccc
Q 033499 65 VVCADCDGNGAV-----LCSQCKGSGVNAVDFFG----GQFKAE-----A--KGICYAGTAME 111 (118)
Q Consensus 65 ivC~dC~GnGa~-----~C~QCkG~GVN~~D~f~----G~fKag-----~--~~~CWlc~g~~ 111 (118)
..|++|.|.|-+ .|.-|.|+|-- |-|. ++|..+ . .--|.-|+|+-
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~--~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG 63 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFS--DDFDPKGVANLSRETVDLFASFEIPCPKCRGKG 63 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccc--cccChhhhhhhhhccccccccCCCCCCeeccce
Confidence 469999999965 49999999954 3333 333221 1 13677777764
No 68
>PRK14281 chaperone protein DnaJ; Provisional
Probab=70.59 E-value=2.2 Score=35.61 Aligned_cols=37 Identities=32% Similarity=0.716 Sum_probs=26.8
Q ss_pred ceEeccCCCCCcE---------------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~---------------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
-..|+.|.|.|.+ .|..|.|.|.-. +..|--|.|+..
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~ 230 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV------------KDRCPACYGEGI 230 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee------------CCCCCCCCCCcc
Confidence 4579999999954 599999988431 255888887544
No 69
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=68.29 E-value=2.8 Score=35.80 Aligned_cols=25 Identities=36% Similarity=0.970 Sum_probs=17.0
Q ss_pred cceEeccCCCCCcE-----ecccccCCccc
Q 033499 63 NSVVCADCDGNGAV-----LCSQCKGSGVN 87 (118)
Q Consensus 63 ~sivC~dC~GnGa~-----~C~QCkG~GVN 87 (118)
-..+|.+|+|.|-. .|..|.|.++=
T Consensus 169 ~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 169 PQLVCDSCNGSGETISLKDRCKTCSGAKVV 198 (337)
T ss_pred ceeEeccCCCccccccccccCcccccchhh
Confidence 45667777777776 77777777653
No 70
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=63.83 E-value=4.3 Score=30.24 Aligned_cols=24 Identities=42% Similarity=0.811 Sum_probs=20.8
Q ss_pred ceEeccCCCCCcEecccccCCccc
Q 033499 64 SVVCADCDGNGAVLCSQCKGSGVN 87 (118)
Q Consensus 64 sivC~dC~GnGa~~C~QCkG~GVN 87 (118)
...|..|-|-+.++|..|.|+==.
T Consensus 99 ~~~C~~Cgg~rfv~C~~C~Gs~k~ 122 (147)
T cd03031 99 GGVCEGCGGARFVPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCCCcCeEECCCCCCcceE
Confidence 456999999999999999998544
No 71
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=49.20 E-value=11 Score=32.12 Aligned_cols=20 Identities=50% Similarity=1.252 Sum_probs=16.0
Q ss_pred cceEeccCCCCCcEecccccCCc
Q 033499 63 NSVVCADCDGNGAVLCSQCKGSG 85 (118)
Q Consensus 63 ~sivC~dC~GnGa~~C~QCkG~G 85 (118)
-.+.|..|.|.| |..||++|
T Consensus 259 vdv~~~~~~g~g---c~~ck~~~ 278 (339)
T PRK00488 259 VDVSCFKCGGKG---CRVCKGTG 278 (339)
T ss_pred EEEEEeccCCCc---ccccCCCC
Confidence 357788898877 88888887
No 72
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.06 E-value=8.5 Score=36.31 Aligned_cols=25 Identities=36% Similarity=0.872 Sum_probs=17.0
Q ss_pred eEeccCCCCCcE------------ecccccCCcccce
Q 033499 65 VVCADCDGNGAV------------LCSQCKGSGVNAV 89 (118)
Q Consensus 65 ivC~dC~GnGa~------------~C~QCkG~GVN~~ 89 (118)
-.|+.|.|.|-+ .|..|.|...|.+
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 568888888843 5777777766544
No 73
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=45.69 E-value=9.2 Score=26.87 Aligned_cols=28 Identities=36% Similarity=0.789 Sum_probs=21.7
Q ss_pred ceEeccCCCCCc----------------EecccccCCcccceec
Q 033499 64 SVVCADCDGNGA----------------VLCSQCKGSGVNAVDF 91 (118)
Q Consensus 64 sivC~dC~GnGa----------------~~C~QCkG~GVN~~D~ 91 (118)
|..|.+|.|.|+ +.|.+|.|.|+..+|-
T Consensus 5 S~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~sr~~~ 48 (95)
T PF03589_consen 5 SDSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYSRLPS 48 (95)
T ss_pred CCCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCCCCCh
Confidence 456778888773 5699999999997774
No 74
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.66 E-value=19 Score=30.60 Aligned_cols=25 Identities=36% Similarity=0.772 Sum_probs=21.3
Q ss_pred cccceEeccCCCCCcEecccccCCc
Q 033499 61 KRNSVVCADCDGNGAVLCSQCKGSG 85 (118)
Q Consensus 61 Kp~sivC~dC~GnGa~~C~QCkG~G 85 (118)
....-+|..|.|-+.++|+-|-|+=
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~ 250 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSC 250 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCce
Confidence 3355789999999999999999973
No 75
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.78 E-value=31 Score=20.20 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=5.0
Q ss_pred CCcEeccccc
Q 033499 73 NGAVLCSQCK 82 (118)
Q Consensus 73 nGa~~C~QCk 82 (118)
.+.+-|++|+
T Consensus 23 ~~~vrC~~C~ 32 (37)
T PF13719_consen 23 GRKVRCPKCG 32 (37)
T ss_pred CcEEECCCCC
Confidence 3445555554
No 76
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=35.28 E-value=24 Score=29.08 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=14.4
Q ss_pred cceEeccCCCCCcEecccccCCcc
Q 033499 63 NSVVCADCDGNGAVLCSQCKGSGV 86 (118)
Q Consensus 63 ~sivC~dC~GnGa~~C~QCkG~GV 86 (118)
.+.-|.+-.|.+.+.|.-|+|+|=
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGr 49 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGR 49 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCcc
Confidence 344444556666677777777664
No 77
>smart00261 FU Furin-like repeats.
Probab=35.13 E-value=20 Score=20.61 Aligned_cols=20 Identities=40% Similarity=0.894 Sum_probs=16.2
Q ss_pred ceEeccCCCCCcEecccccC
Q 033499 64 SVVCADCDGNGAVLCSQCKG 83 (118)
Q Consensus 64 sivC~dC~GnGa~~C~QCkG 83 (118)
+..|..|.|.+...|.+|+.
T Consensus 8 ~~~C~~C~~~~~~~C~~C~~ 27 (46)
T smart00261 8 HPECATCTGPGPDDCTSCKH 27 (46)
T ss_pred cccccccCCcCcCcCccCCc
Confidence 46688899888888999964
No 78
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=35.02 E-value=16 Score=30.17 Aligned_cols=19 Identities=42% Similarity=0.900 Sum_probs=15.7
Q ss_pred ccceEeccCCCCCcEeccc
Q 033499 62 RNSVVCADCDGNGAVLCSQ 80 (118)
Q Consensus 62 p~sivC~dC~GnGa~~C~Q 80 (118)
..++.||-|.|+|-|+=.|
T Consensus 36 ~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 36 RDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred CCCCcCCCCcCCccCCccc
Confidence 4689999999999887544
No 79
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=33.41 E-value=37 Score=19.17 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=2.9
Q ss_pred Eeccccc
Q 033499 76 VLCSQCK 82 (118)
Q Consensus 76 ~~C~QCk 82 (118)
+.|+.|+
T Consensus 26 v~C~~C~ 32 (38)
T TIGR02098 26 VRCGKCG 32 (38)
T ss_pred EECCCCC
Confidence 3444443
No 80
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.13 E-value=24 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=21.8
Q ss_pred CccccceEeccCCCCCcE-----ecccccCCcccce
Q 033499 59 NTKRNSVVCADCDGNGAV-----LCSQCKGSGVNAV 89 (118)
Q Consensus 59 ~tKp~sivC~dC~GnGa~-----~C~QCkG~GVN~~ 89 (118)
..-|-...|.+|.....+ .|.+|.+..++.+
T Consensus 65 ~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~ 100 (113)
T PRK12380 65 VYKPAQAWCWDCSQVVEIHQHDAQCPHCHGERLRVD 100 (113)
T ss_pred EeeCcEEEcccCCCEEecCCcCccCcCCCCCCcEEc
Confidence 445678899999865433 3999988766543
No 81
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.95 E-value=28 Score=29.59 Aligned_cols=22 Identities=32% Similarity=0.863 Sum_probs=18.6
Q ss_pred cccceEeccCCCCCcEeccccc
Q 033499 61 KRNSVVCADCDGNGAVLCSQCK 82 (118)
Q Consensus 61 Kp~sivC~dC~GnGa~~C~QCk 82 (118)
+-.-..|..|.-||-+.|.-|-
T Consensus 259 ~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 259 DGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCcEEECcccCCCCceeCCccC
Confidence 3346899999999999999984
No 82
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=31.42 E-value=26 Score=33.28 Aligned_cols=13 Identities=31% Similarity=0.956 Sum_probs=8.8
Q ss_pred ceEeccCCCCCcE
Q 033499 64 SVVCADCDGNGAV 76 (118)
Q Consensus 64 sivC~dC~GnGa~ 76 (118)
.-.|+.|.|.|-+
T Consensus 738 ~G~C~~C~G~G~~ 750 (943)
T PRK00349 738 GGRCEACQGDGVI 750 (943)
T ss_pred CCCCCcccccceE
Confidence 3568888777754
No 83
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=30.48 E-value=23 Score=36.26 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=5.7
Q ss_pred eEeccCCCCC
Q 033499 65 VVCADCDGNG 74 (118)
Q Consensus 65 ivC~dC~GnG 74 (118)
-.|+.|.|.|
T Consensus 1608 GrC~~C~G~G 1617 (1809)
T PRK00635 1608 GQCSDCWGLG 1617 (1809)
T ss_pred CCCCCCccCc
Confidence 3466666555
No 84
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=30.34 E-value=25 Score=20.64 Aligned_cols=20 Identities=35% Similarity=0.894 Sum_probs=17.1
Q ss_pred EeccCCCCCcEecccccCCc
Q 033499 66 VCADCDGNGAVLCSQCKGSG 85 (118)
Q Consensus 66 vC~dC~GnGa~~C~QCkG~G 85 (118)
-|..|.|.+.-.|..|+..=
T Consensus 5 ~C~~C~g~~~~~C~~C~~~~ 24 (49)
T cd00064 5 SCATCTGPGPDQCTSCRHGF 24 (49)
T ss_pred ccCCCcCcCcCcCccCcCcc
Confidence 58899999999999998653
No 85
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=28.10 E-value=30 Score=21.17 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=22.0
Q ss_pred cceEeccCCCCCcEecccccCCcccceecc
Q 033499 63 NSVVCADCDGNGAVLCSQCKGSGVNAVDFF 92 (118)
Q Consensus 63 ~sivC~dC~GnGa~~C~QCkG~GVN~~D~f 92 (118)
.-+.|.+|. ...+|.+|--.|+-+..|-
T Consensus 14 ~r~~C~~C~--d~dLC~~Cf~~g~~~~~H~ 41 (49)
T cd02335 14 IRIKCAECP--DFDLCLECFSAGAEIGKHR 41 (49)
T ss_pred cEEECCCCC--CcchhHHhhhCcCCCCCCC
Confidence 357899996 4899999999998765553
No 86
>PHA03035 hypothetical protein; Provisional
Probab=27.47 E-value=21 Score=28.10 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.6
Q ss_pred CcccceeccCCeeccc
Q 033499 84 SGVNAVDFFGGQFKAE 99 (118)
Q Consensus 84 ~GVN~~D~f~G~fKag 99 (118)
-|||++|.|+|+-|.-
T Consensus 93 iginsad~yggks~kn 108 (158)
T PHA03035 93 IGINSADAYGGKSKKN 108 (158)
T ss_pred cCcchhhhhCCccccc
Confidence 5999999999998653
No 87
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=26.79 E-value=68 Score=22.98 Aligned_cols=41 Identities=24% Similarity=0.605 Sum_probs=25.7
Q ss_pred Eec--cCCCCCcEecccccCCcc--------cceeccCCeecccccceeeeec
Q 033499 66 VCA--DCDGNGAVLCSQCKGSGV--------NAVDFFGGQFKAEAKGICYAGT 108 (118)
Q Consensus 66 vC~--dC~GnGa~~C~QCkG~GV--------N~~D~f~G~fKag~~~~CWlc~ 108 (118)
.|. -|.|.|+-.|..|+.-=. +..+.|.+.|... ..|..|-
T Consensus 5 ~C~~~gC~Gp~~~~C~sC~~~~~~g~Cv~~C~~~~~~~~~~~~~--~~C~~Ch 55 (132)
T PF14843_consen 5 QCASDGCWGPGPDQCLSCRNFSFNGTCVASCPDGYYFDGSYEDS--NTCQPCH 55 (132)
T ss_dssp TBGTT-BSSSSTTCBSSBSSEEETTEEESSTSSSSSSSSEEEET--TEEEE--
T ss_pred ccCCCCccCcChhhccCccCcccCCcchhhcccccccccccccC--CcCcccC
Confidence 466 899999999999985211 1123456667665 7888764
No 88
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.65 E-value=38 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=21.5
Q ss_pred CccccceEeccCCCCC-----cEecccccCCcccce
Q 033499 59 NTKRNSVVCADCDGNG-----AVLCSQCKGSGVNAV 89 (118)
Q Consensus 59 ~tKp~sivC~dC~GnG-----a~~C~QCkG~GVN~~ 89 (118)
..-|-...|.+|.-.- ...|.+|.+..++.+
T Consensus 65 ~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~ 100 (115)
T TIGR00100 65 EDEPVECECEDCSEEVSPEIDLYRCPKCHGIMLQVR 100 (115)
T ss_pred EeeCcEEEcccCCCEEecCCcCccCcCCcCCCcEEe
Confidence 4456778999996443 344999988776543
No 89
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=25.86 E-value=43 Score=24.02 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=25.0
Q ss_pred cceEeccCCCC----CcEecccccCCcccceeccCCeecccccceeeeeccc
Q 033499 63 NSVVCADCDGN----GAVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAM 110 (118)
Q Consensus 63 ~sivC~dC~Gn----Ga~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~ 110 (118)
.+-.|..|... |+..|.+|- ||.| +|+.|.-+
T Consensus 43 ~~~~C~~CK~~v~q~g~~YCq~CA-------------YkkG---iCamCGKk 78 (90)
T PF10235_consen 43 YSSKCKICKTKVHQPGAKYCQTCA-------------YKKG---ICAMCGKK 78 (90)
T ss_pred cCccccccccccccCCCccChhhh-------------cccC---cccccCCe
Confidence 46679999887 999999994 5555 89888644
No 90
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.56 E-value=33 Score=32.57 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=26.6
Q ss_pred EecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 76 VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 76 ~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
-.|..|+|.|+=.+|. .|-+.....|-.|.|+.
T Consensus 737 G~C~~C~G~G~~~~~~---~f~~~~~~~C~~C~G~R 769 (924)
T TIGR00630 737 GRCEACQGDGVIKIEM---HFLPDVYVPCEVCKGKR 769 (924)
T ss_pred CCCCCCccceEEEEEc---cCCCCcccCCCCcCCce
Confidence 4599999999988875 36666678999999975
No 91
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.95 E-value=43 Score=23.85 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=21.5
Q ss_pred CccccceEeccCCCC------CcEecccccCCcccce
Q 033499 59 NTKRNSVVCADCDGN------GAVLCSQCKGSGVNAV 89 (118)
Q Consensus 59 ~tKp~sivC~dC~Gn------Ga~~C~QCkG~GVN~~ 89 (118)
.+-|-...|.+|.-. ....|.+|.+..++.+
T Consensus 66 e~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~ 102 (117)
T PRK00564 66 VDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIIT 102 (117)
T ss_pred EecCCEEEhhhCCCccccCCccCCcCcCCCCCceEEe
Confidence 445678899999743 3334999998766543
No 92
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=24.80 E-value=26 Score=24.44 Aligned_cols=19 Identities=37% Similarity=0.980 Sum_probs=13.4
Q ss_pred eEeccCCCCC---------cEecccccC
Q 033499 65 VVCADCDGNG---------AVLCSQCKG 83 (118)
Q Consensus 65 ivC~dC~GnG---------a~~C~QCkG 83 (118)
-+|+||...+ ..+|.+|-|
T Consensus 4 ~~CaDC~~~~p~w~s~~~GifvC~~Csg 31 (112)
T smart00105 4 KKCFDCGAPNPTWASVNLGVFLCIECSG 31 (112)
T ss_pred CcccCCCCCCCCcEEeccceeEhHHhHH
Confidence 4789998754 456888864
No 93
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=23.62 E-value=39 Score=34.72 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=26.7
Q ss_pred ecccccCCcccceeccCCeecccccceeeeecccc
Q 033499 77 LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAME 111 (118)
Q Consensus 77 ~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~ 111 (118)
.|..|+|.|+-.+|. +|-+.....|--|.|+.
T Consensus 1609 rC~~C~G~G~i~i~m---~fl~dv~~~C~~C~G~R 1640 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDR---AFYALEKRPCPTCSGFR 1640 (1809)
T ss_pred CCCCCccCceEEEec---ccCCCcccCCCCCCCcC
Confidence 499999999988886 47777778899999975
No 94
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=22.87 E-value=42 Score=31.93 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=27.7
Q ss_pred cEecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 75 AVLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 75 a~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
.-.|..|+|.|+=.+|. +|-+.....|-.|.|+..
T Consensus 738 ~G~C~~C~G~G~~~~~~---~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 738 GGRCEACQGDGVIKIEM---HFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCCcccccceEEEEe---ccCCCccccCccccCccc
Confidence 34599999999988775 466666789999999754
No 95
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=22.79 E-value=55 Score=19.25 Aligned_cols=9 Identities=33% Similarity=1.280 Sum_probs=5.7
Q ss_pred CCcEecccc
Q 033499 73 NGAVLCSQC 81 (118)
Q Consensus 73 nGa~~C~QC 81 (118)
+|-..|+.|
T Consensus 17 ~g~~vC~~C 25 (43)
T PF08271_consen 17 RGELVCPNC 25 (43)
T ss_dssp TTEEEETTT
T ss_pred CCeEECCCC
Confidence 466666666
No 96
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=22.01 E-value=44 Score=28.97 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=5.9
Q ss_pred ecccccCCc
Q 033499 77 LCSQCKGSG 85 (118)
Q Consensus 77 ~C~QCkG~G 85 (118)
-|..|.++|
T Consensus 414 GC~~C~~tG 422 (486)
T TIGR02533 414 GCPHCNHTG 422 (486)
T ss_pred CchhccCCC
Confidence 367777666
No 97
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=21.89 E-value=47 Score=29.11 Aligned_cols=9 Identities=33% Similarity=1.088 Sum_probs=5.2
Q ss_pred ecccccCCc
Q 033499 77 LCSQCKGSG 85 (118)
Q Consensus 77 ~C~QCkG~G 85 (118)
-|.+|.|+|
T Consensus 490 gC~~C~~~G 498 (564)
T TIGR02538 490 GCDECSNTG 498 (564)
T ss_pred CCcccCCCC
Confidence 366666655
No 98
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=21.81 E-value=72 Score=18.73 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=4.7
Q ss_pred eEeccCCCCC
Q 033499 65 VVCADCDGNG 74 (118)
Q Consensus 65 ivC~dC~GnG 74 (118)
..|..|.++|
T Consensus 4 ~~C~~C~~~~ 13 (33)
T PF08792_consen 4 KKCSKCGGNG 13 (33)
T ss_pred eEcCCCCCCe
Confidence 3444444444
No 99
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=21.76 E-value=44 Score=20.66 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred cceEeccCCCCCcEecccccCCcccceec
Q 033499 63 NSVVCADCDGNGAVLCSQCKGSGVNAVDF 91 (118)
Q Consensus 63 ~sivC~dC~GnGa~~C~QCkG~GVN~~D~ 91 (118)
.-+.|.+|. ...+|.+|...|.-+-.|
T Consensus 14 ~R~~C~~C~--dydLC~~Cf~~~~~~~~H 40 (49)
T cd02345 14 IRFPCQVCR--DYSLCLGCYTKGRETKRH 40 (49)
T ss_pred eeEECCCCC--CcCchHHHHhCCCcCCCC
Confidence 346899995 599999999888755444
No 100
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.40 E-value=51 Score=24.03 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=11.4
Q ss_pred ccccceEeccCCCCCc
Q 033499 60 TKRNSVVCADCDGNGA 75 (118)
Q Consensus 60 tKp~sivC~dC~GnGa 75 (118)
+-|-..+|.+|.-.-.
T Consensus 66 ~~p~~~~C~~CG~~~~ 81 (135)
T PRK03824 66 EEEAVLKCRNCGNEWS 81 (135)
T ss_pred ecceEEECCCCCCEEe
Confidence 5667889999974443
No 101
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=21.30 E-value=44 Score=20.57 Aligned_cols=12 Identities=50% Similarity=1.204 Sum_probs=6.3
Q ss_pred CCCCcEeccccc
Q 033499 71 DGNGAVLCSQCK 82 (118)
Q Consensus 71 ~GnGa~~C~QCk 82 (118)
+++|.-.|.||.
T Consensus 22 ~~~G~~~C~~C~ 33 (40)
T PF08273_consen 22 DGRGTWICRQCG 33 (40)
T ss_dssp ---S-EEETTTT
T ss_pred ccCCCEECCCCC
Confidence 455777898993
No 102
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=21.19 E-value=34 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceEeccCCCCCcEecccccCCcccceec
Q 033499 64 SVVCADCDGNGAVLCSQCKGSGVNAVDF 91 (118)
Q Consensus 64 sivC~dC~GnGa~~C~QCkG~GVN~~D~ 91 (118)
-+.|..|. ..-+|.+|.-.|+-+.+|
T Consensus 14 RykCl~C~--d~DlC~~Cf~~g~~~~~H 39 (48)
T cd02343 14 RYRCLQCT--DMDLCKTCFLGGVKPEGH 39 (48)
T ss_pred eEECCCCC--CchhHHHHHhCCccCCCC
Confidence 46677776 488999999999887665
No 103
>KOG4113 consensus Guanine nucleotide exchange factor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.77 E-value=62 Score=24.00 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=8.9
Q ss_pred ccceEeccCCC
Q 033499 62 RNSVVCADCDG 72 (118)
Q Consensus 62 p~sivC~dC~G 72 (118)
.+-.+|+||+-
T Consensus 65 ~K~LvCADCEk 75 (99)
T KOG4113|consen 65 LKYLVCADCEK 75 (99)
T ss_pred eeEEEEecccc
Confidence 46899999983
No 104
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=20.54 E-value=63 Score=21.90 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=16.1
Q ss_pred Ceecccccceeeeecccceeee
Q 033499 94 GQFKAEAKGICYAGTAMELALL 115 (118)
Q Consensus 94 G~fKag~~~~CWlc~g~~~~~~ 115 (118)
-||=|| ..|..|..+....+
T Consensus 3 krFIAG--a~CP~C~~~D~i~~ 22 (71)
T PF09526_consen 3 KRFIAG--AVCPKCQAMDTIMM 22 (71)
T ss_pred ceEecC--ccCCCCcCccEEEE
Confidence 389999 99999998875543
No 105
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=20.09 E-value=53 Score=27.78 Aligned_cols=21 Identities=43% Similarity=1.067 Sum_probs=16.2
Q ss_pred cceEeccCCCC---------CcEecccccC
Q 033499 63 NSVVCADCDGN---------GAVLCSQCKG 83 (118)
Q Consensus 63 ~sivC~dC~Gn---------Ga~~C~QCkG 83 (118)
.--+|+||.-. |..+|.+|-|
T Consensus 19 ~Nk~CaDCga~~P~W~S~nlGvfiCi~Cag 48 (319)
T COG5347 19 SNKKCADCGAPNPTWASVNLGVFLCIDCAG 48 (319)
T ss_pred ccCccccCCCCCCceEecccCeEEEeecch
Confidence 34579999876 6788999965
Done!