Query 033499
Match_columns 118
No_of_seqs 31 out of 33
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 04:09:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 97.1 0.00029 1E-08 46.9 2.7 47 62-112 26-78 (104)
2 1exk_A DNAJ protein; extended 96.9 0.00043 1.5E-08 43.5 2.3 46 63-112 10-61 (79)
3 3lcz_A YCZA, inhibitor of trap 95.4 0.0074 2.5E-07 37.8 2.1 26 64-89 9-37 (53)
4 1nlt_A Protein YDJ1, mitochond 95.1 0.0064 2.2E-07 46.2 1.3 26 63-88 37-67 (248)
5 1exk_A DNAJ protein; extended 94.1 0.024 8.3E-07 35.3 2.0 37 64-112 28-75 (79)
6 2bx9_A Anti-trap, AT, tryptoph 93.3 0.043 1.5E-06 34.2 2.1 26 63-88 8-36 (53)
7 2ctt_A DNAJ homolog subfamily 91.9 0.071 2.4E-06 35.3 1.9 37 64-112 45-92 (104)
8 1nlt_A Protein YDJ1, mitochond 86.2 0.24 8.1E-06 37.6 1.2 21 65-85 55-90 (248)
9 1pft_A TFIIB, PFTFIIBN; N-term 56.6 4.8 0.00017 23.4 1.4 20 63-82 4-31 (50)
10 1dl6_A Transcription factor II 34.2 24 0.00083 21.6 2.1 19 63-81 10-36 (58)
11 1ssz_A Pulmonary surfactant-as 30.6 5.6 0.00019 23.7 -1.2 7 104-110 1-7 (34)
12 2dwf_A Pulmonary surfactant-as 30.5 7.8 0.00027 23.2 -0.6 6 104-109 1-6 (34)
13 2jny_A Uncharacterized BCR; st 29.4 21 0.00073 22.9 1.3 18 64-81 10-34 (67)
14 1nui_A DNA primase/helicase; z 29.2 23 0.0008 25.7 1.7 32 59-91 9-48 (255)
15 2d8v_A Zinc finger FYVE domain 28.1 20 0.00069 23.9 1.0 21 63-85 18-38 (67)
16 2hf1_A Tetraacyldisaccharide-1 26.5 23 0.00078 22.7 1.1 18 64-81 8-32 (68)
17 2jr6_A UPF0434 protein NMA0874 26.2 24 0.00082 22.6 1.1 18 64-81 8-32 (68)
18 2riq_A Poly [ADP-ribose] polym 26.1 8.2 0.00028 28.7 -1.3 20 64-83 66-86 (160)
19 2fc7_A ZZZ3 protein; structure 25.1 52 0.0018 21.4 2.6 24 63-86 35-59 (82)
20 2ysm_A Myeloid/lymphoid or mix 25.1 35 0.0012 22.2 1.8 26 59-84 2-31 (111)
21 2pk7_A Uncharacterized protein 24.5 28 0.00095 22.4 1.2 18 64-81 8-32 (69)
22 2odd_A Protein CBFA2T1; MYND z 24.5 30 0.001 20.7 1.3 24 61-84 14-37 (64)
23 2js4_A UPF0434 protein BB2007; 24.5 29 0.001 22.3 1.3 18 64-81 8-32 (70)
24 2kpi_A Uncharacterized protein 22.3 34 0.0012 21.0 1.2 18 64-81 10-34 (56)
25 4bbr_M Transcription initiatio 21.3 28 0.00095 27.5 0.8 18 64-81 21-48 (345)
26 3pfn_A NAD kinase; structural 20.4 39 0.0013 27.4 1.5 25 3-27 275-299 (365)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00029 Score=46.93 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=32.8
Q ss_pred ccceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 62 RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 62 p~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
+....|+.|+|.|+ ..|..|.|+|.-.... |.|..- ..|..|.|.-+
T Consensus 26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~~~~--~~C~~C~G~G~ 78 (104)
T 2ctt_A 26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPFVMR--STCRRCGGRGS 78 (104)
T ss_dssp SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTEEEE--EECSSSSSSSE
T ss_pred eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCEEEE--EECCcCCCcce
Confidence 35688999999985 6799999999754443 556433 56777766543
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.92 E-value=0.00043 Score=43.47 Aligned_cols=46 Identities=28% Similarity=0.550 Sum_probs=28.4
Q ss_pred cceEeccCCCCCc------EecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 63 ~sivC~dC~GnGa------~~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
....|+.|.|.|+ ..|..|.|+|.-.... |.|..- ..|..|.|.-+
T Consensus 10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~--~~C~~C~G~G~ 61 (79)
T 1exk_A 10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQ--QTCPHCQGRGT 61 (79)
T ss_dssp CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEE--EECTTTTTSSE
T ss_pred cceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEe--eECcCCCCccE
Confidence 4567888888885 5788888888643322 445322 45666665543
No 3
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.42 E-value=0.0074 Score=37.76 Aligned_cols=26 Identities=35% Similarity=0.931 Sum_probs=22.5
Q ss_pred ceEeccCCCCCc---EecccccCCcccce
Q 033499 64 SVVCADCDGNGA---VLCSQCKGSGVNAV 89 (118)
Q Consensus 64 sivC~dC~GnGa---~~C~QCkG~GVN~~ 89 (118)
...|++|.|.|. ..|..|.|.|+-..
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 568999999998 68999999997543
No 4
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=95.07 E-value=0.0064 Score=46.21 Aligned_cols=26 Identities=31% Similarity=1.083 Sum_probs=20.6
Q ss_pred cceEeccCCCCCc-----EecccccCCcccc
Q 033499 63 NSVVCADCDGNGA-----VLCSQCKGSGVNA 88 (118)
Q Consensus 63 ~sivC~dC~GnGa-----~~C~QCkG~GVN~ 88 (118)
....|+.|.|+|+ ..|+.|.|+|+-.
T Consensus 37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~ 67 (248)
T 1nlt_A 37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKF 67 (248)
T ss_dssp EEEECTTTTTCSBSTTTCCCCTTSSSSSCEE
T ss_pred EEEeCCCCcCccCCCCCCccCCCCCCCcEEE
Confidence 3568999999995 5699999999643
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=94.10 E-value=0.024 Score=35.30 Aligned_cols=37 Identities=30% Similarity=0.705 Sum_probs=26.2
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|..|.|+|.-. ++.|..|.|..+
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~G~ 75 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI------------KDPCNKCHGHGR 75 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC------------SSBCGGGTTSSE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC------------CCcCCCCCCeEE
Confidence 3578888888854 788888888532 256777777654
No 6
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=93.33 E-value=0.043 Score=34.24 Aligned_cols=26 Identities=35% Similarity=0.888 Sum_probs=21.5
Q ss_pred cceEeccCCCCCcE---ecccccCCcccc
Q 033499 63 NSVVCADCDGNGAV---LCSQCKGSGVNA 88 (118)
Q Consensus 63 ~sivC~dC~GnGa~---~C~QCkG~GVN~ 88 (118)
-+..|+.|.|.|++ .|..|.|+|.-.
T Consensus 8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 8 LEVACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred ccccCCCCcceeccCCCCCccCCCCccEE
Confidence 46789999999965 799999999643
No 7
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.91 E-value=0.071 Score=35.25 Aligned_cols=37 Identities=24% Similarity=0.525 Sum_probs=27.1
Q ss_pred ceEeccCCCCCcE-----------ecccccCCcccceeccCCeecccccceeeeecccce
Q 033499 64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAEAKGICYAGTAMEL 112 (118)
Q Consensus 64 sivC~dC~GnGa~-----------~C~QCkG~GVN~~D~f~G~fKag~~~~CWlc~g~~~ 112 (118)
...|+.|.|.|.+ .|..|.|+|.-. ++.|--|.|..+
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~ 92 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII------------ISPCVVCRGAGQ 92 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC------------SSCCSSSSSCSE
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC------------CCcCCCCCCeeE
Confidence 4689999999854 799999988421 256888877543
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=86.15 E-value=0.24 Score=37.56 Aligned_cols=21 Identities=38% Similarity=1.091 Sum_probs=14.0
Q ss_pred eEeccCCCCCcE---------------ecccccCCc
Q 033499 65 VVCADCDGNGAV---------------LCSQCKGSG 85 (118)
Q Consensus 65 ivC~dC~GnGa~---------------~C~QCkG~G 85 (118)
..|+.|.|.|.+ .|..|.|+|
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G 90 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTG 90 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSS
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcC
Confidence 567777777743 466666666
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=56.56 E-value=4.8 Score=23.39 Aligned_cols=20 Identities=30% Similarity=1.084 Sum_probs=14.2
Q ss_pred cceEeccCCC--------CCcEeccccc
Q 033499 63 NSVVCADCDG--------NGAVLCSQCK 82 (118)
Q Consensus 63 ~sivC~dC~G--------nGa~~C~QCk 82 (118)
+...||+|.+ .|...|..|.
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG 31 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCG 31 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccC
Confidence 3567888866 3677888883
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.25 E-value=24 Score=21.61 Aligned_cols=19 Identities=26% Similarity=0.875 Sum_probs=13.7
Q ss_pred cceEeccCCC--------CCcEecccc
Q 033499 63 NSVVCADCDG--------NGAVLCSQC 81 (118)
Q Consensus 63 ~sivC~dC~G--------nGa~~C~QC 81 (118)
....||+|.+ .|-..|..|
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~C 36 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPEC 36 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTT
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCC
Confidence 3347999965 477888888
No 11
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=30.64 E-value=5.6 Score=23.71 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=5.5
Q ss_pred eeeeccc
Q 033499 104 CYAGTAM 110 (118)
Q Consensus 104 CWlc~g~ 110 (118)
|||||.-
T Consensus 1 cwlcr~l 7 (34)
T 1ssz_A 1 CWLCRAL 7 (34)
T ss_dssp CHHHHHH
T ss_pred ChhHHHH
Confidence 8999853
No 12
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=30.48 E-value=7.8 Score=23.19 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=5.0
Q ss_pred eeeecc
Q 033499 104 CYAGTA 109 (118)
Q Consensus 104 CWlc~g 109 (118)
||||+.
T Consensus 1 CwlCrt 6 (34)
T 2dwf_A 1 CWLCRA 6 (34)
T ss_dssp CCCHHH
T ss_pred ChhHHH
Confidence 899974
No 13
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.39 E-value=21 Score=22.93 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=11.2
Q ss_pred ceEeccCCC-------CCcEecccc
Q 033499 64 SVVCADCDG-------NGAVLCSQC 81 (118)
Q Consensus 64 sivC~dC~G-------nGa~~C~QC 81 (118)
-++||.|.| .|...|..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c 34 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERL 34 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTT
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCC
Confidence 457777766 455566665
No 14
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=29.20 E-value=23 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.455 Sum_probs=17.5
Q ss_pred CccccceEeccCCC--------CCcEecccccCCcccceec
Q 033499 59 NTKRNSVVCADCDG--------NGAVLCSQCKGSGVNAVDF 91 (118)
Q Consensus 59 ~tKp~sivC~dC~G--------nGa~~C~QCkG~GVN~~D~ 91 (118)
+.-.....||.|-| .|+..|.||. .|++..|.
T Consensus 9 ~~~~~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg-~~~~~~~~ 48 (255)
T 1nui_A 9 SVFLYHIPCDNCGSSDGNSLFSDGHTFCYVCE-KWTAGNED 48 (255)
T ss_dssp -CEEEEECCSSSCCSSCEEEETTSCEEETTTC-CEEC----
T ss_pred cceecCCcCCCCCCCCCceEeCCCCeecccCC-CcCCCccc
Confidence 33445677888865 3467888885 44544333
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.11 E-value=20 Score=23.90 Aligned_cols=21 Identities=38% Similarity=1.108 Sum_probs=16.2
Q ss_pred cceEeccCCCCCcEecccccCCc
Q 033499 63 NSVVCADCDGNGAVLCSQCKGSG 85 (118)
Q Consensus 63 ~sivC~dC~GnGa~~C~QCkG~G 85 (118)
-+++|.+|||. ..|..|--.+
T Consensus 18 AtlrC~gCdgD--LYC~rC~rE~ 38 (67)
T 2d8v_A 18 ATLRCAGCDGD--LYCARCFREG 38 (67)
T ss_dssp CCEEETTTTSE--EECSSHHHHH
T ss_pred CeEEecCCCCc--eehHHHHHHH
Confidence 36899999975 8999995443
No 16
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.54 E-value=23 Score=22.72 Aligned_cols=18 Identities=28% Similarity=0.759 Sum_probs=11.0
Q ss_pred ceEeccCCCC-------CcEecccc
Q 033499 64 SVVCADCDGN-------GAVLCSQC 81 (118)
Q Consensus 64 sivC~dC~Gn-------Ga~~C~QC 81 (118)
-++||.|.|. |...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGD 32 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTT
T ss_pred heECCCCCCcCeEeCCCCEEEcCCC
Confidence 3567777653 55566655
No 17
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.16 E-value=24 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=11.1
Q ss_pred ceEeccCCCC-------CcEecccc
Q 033499 64 SVVCADCDGN-------GAVLCSQC 81 (118)
Q Consensus 64 sivC~dC~Gn-------Ga~~C~QC 81 (118)
-++||.|.|. |...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQA 32 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTT
T ss_pred heECCCCCCcCeEeCCCCEEEcCCC
Confidence 4567777653 55566655
No 18
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=26.06 E-value=8.2 Score=28.69 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.3
Q ss_pred ceEeccCCCCCcE-ecccccC
Q 033499 64 SVVCADCDGNGAV-LCSQCKG 83 (118)
Q Consensus 64 sivC~dC~GnGa~-~C~QCkG 83 (118)
--+|+|+---|+. +|++|+|
T Consensus 66 l~r~ADgm~FGal~~CP~C~G 86 (160)
T 2riq_A 66 LDRVADGMVFGALLPCEECSG 86 (160)
T ss_dssp HHHHHHHHHHCEECCCTTTCC
T ss_pred HHHHHHHHHhCCCCCCCCCCC
Confidence 4579999999998 8999994
No 19
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.15 E-value=52 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.2
Q ss_pred cceEeccCCC-CCcEecccccCCcc
Q 033499 63 NSVVCADCDG-NGAVLCSQCKGSGV 86 (118)
Q Consensus 63 ~sivC~dC~G-nGa~~C~QCkG~GV 86 (118)
.-..|.+|.- +|.-+|..|...|.
T Consensus 35 ~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 35 VRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp CEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred ceEECCcCCCCcceecHHHHHhCcc
Confidence 4567888864 78999999998876
No 20
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.14 E-value=35 Score=22.21 Aligned_cols=26 Identities=27% Similarity=0.738 Sum_probs=20.2
Q ss_pred CccccceEeccCCCCCc----EecccccCC
Q 033499 59 NTKRNSVVCADCDGNGA----VLCSQCKGS 84 (118)
Q Consensus 59 ~tKp~sivC~dC~GnGa----~~C~QCkG~ 84 (118)
++..|..+|..|...|. +.|.+|.-.
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~ 31 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQH 31 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSSSCCE
T ss_pred CCCCCCCCCcCCCCCCCCcCCeECCCCCCC
Confidence 35567889999988886 689988754
No 21
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.52 E-value=28 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=10.6
Q ss_pred ceEeccCCCC-------CcEecccc
Q 033499 64 SVVCADCDGN-------GAVLCSQC 81 (118)
Q Consensus 64 sivC~dC~Gn-------Ga~~C~QC 81 (118)
-++||.|.|. |...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGA 32 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTT
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCC
Confidence 4567777653 55555555
No 22
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=24.49 E-value=30 Score=20.71 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.1
Q ss_pred cccceEeccCCCCCcEecccccCC
Q 033499 61 KRNSVVCADCDGNGAVLCSQCKGS 84 (118)
Q Consensus 61 Kp~sivC~dC~GnGa~~C~QCkG~ 84 (118)
+|....|..|.-.+...|+.|+..
T Consensus 14 ~~~~~~C~~C~~~~~~~Cs~C~~~ 37 (64)
T 2odd_A 14 GDSSESCWNCGRKASETCSGCNTA 37 (64)
T ss_dssp -CCSSSCTTTSSCCCEEETTTSCC
T ss_pred CCCCCcCccccCCCcccCCCCCCh
Confidence 345668999988888899998753
No 23
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.45 E-value=29 Score=22.31 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=11.4
Q ss_pred ceEeccCCC-------CCcEecccc
Q 033499 64 SVVCADCDG-------NGAVLCSQC 81 (118)
Q Consensus 64 sivC~dC~G-------nGa~~C~QC 81 (118)
-++||.|.| .|...|..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~c 32 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNAD 32 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTT
T ss_pred heECCCCCCcCEEeCCCCEEEcCCC
Confidence 457777766 356666666
No 24
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.26 E-value=34 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.992 Sum_probs=12.3
Q ss_pred ceEeccCCCC-----CcEecc--cc
Q 033499 64 SVVCADCDGN-----GAVLCS--QC 81 (118)
Q Consensus 64 sivC~dC~Gn-----Ga~~C~--QC 81 (118)
-.+||.|.|. |...|. .|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c 34 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDC 34 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSC
T ss_pred heeCCCCCCcceecCCEEEcCCcCC
Confidence 4578888776 666666 66
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.32 E-value=28 Score=27.45 Aligned_cols=18 Identities=33% Similarity=1.090 Sum_probs=14.7
Q ss_pred ceEeccCCC----------CCcEecccc
Q 033499 64 SVVCADCDG----------NGAVLCSQC 81 (118)
Q Consensus 64 sivC~dC~G----------nGa~~C~QC 81 (118)
...||+|.+ .|-..|+.|
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~C 48 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC 48 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTT
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCC
Confidence 447999986 489999999
No 26
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=20.39 E-value=39 Score=27.43 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=20.0
Q ss_pred ccccccccccCccCCCCccccCCCC
Q 033499 3 SASCSAAMLPFAETLKPRAHVDSSS 27 (118)
Q Consensus 3 ~slcfapics~kss~~pG~~~g~S~ 27 (118)
.++..+||||+.-+.+|-+..+++.
T Consensus 275 ~~i~ltPI~PhsLs~RPiVlp~~~~ 299 (365)
T 3pfn_A 275 PAIMITPICPHSLSFRPIVVPAGVE 299 (365)
T ss_dssp CCEEEEEESCSSTTCCCEEECTTCC
T ss_pred CeEEEEeccCCccCCCceEECCCCE
Confidence 4567899999999999977776653
Done!