BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033500
MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL
KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI

High Scoring Gene Products

Symbol, full name Information P value
AT1G48200 protein from Arabidopsis thaliana 2.2e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033500
        (118 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2023777 - symbol:AT1G48200 "AT1G48200" species...   307  2.2e-27   1


>TAIR|locus:2023777 [details] [associations]
            symbol:AT1G48200 "AT1G48200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
            UniGene:At.38465 UniGene:At.63148 EMBL:BT010912 EMBL:BT010953
            IPI:IPI00531122 RefSeq:NP_175254.2 PaxDb:Q6NPH1 PRIDE:Q6NPH1
            EnsemblPlants:AT1G48200.1 GeneID:841240 KEGG:ath:AT1G48200
            TAIR:At1g48200 eggNOG:NOG278707 HOGENOM:HOG000084205
            InParanoid:Q6NPH1 OMA:DWKQQLF PhylomeDB:Q6NPH1
            ProtClustDB:CLSN2680419 Genevestigator:Q6NPH1 Uniprot:Q6NPH1
        Length = 118

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/118 (52%), Positives = 84/118 (71%)

Query:     3 LANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDLKK 62
             +ANK+     +A+N+N V+NTCL  SF  L LRS KQQ  +E L  +KESL K+NK +K 
Sbjct:     1 MANKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKL 60

Query:    63 RMWDWKQQLYAEATT--ESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118
              MW+WKQQL+AEA +   +A+VPL+ LKAIYG+V T T  +G+ AKED+K S  K++I
Sbjct:    61 TMWEWKQQLFAEAASAGNAAVVPLSTLKAIYGEVTTTTNQSGDTAKEDSKVSTPKIMI 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.124   0.336    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       118   0.00091  102 3  11 23  0.41    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  531 (57 KB)
  Total size of DFA:  107 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.14u 0.07s 15.21t   Elapsed:  00:00:14
  Total cpu time:  15.14u 0.07s 15.21t   Elapsed:  00:00:14
  Start:  Thu May  9 16:01:27 2013   End:  Thu May  9 16:01:41 2013

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