BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033500
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1W2R5|RL29_ACISJ 50S ribosomal protein L29 OS=Acidovorax sp. (strain JS42) GN=rpmC
PE=3 SV=1
Length = 65
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93
+Q D+ GLE+E +SL KA+ L RM QQL AT ++ +AR K I +
Sbjct: 8 RQKDVAGLEAEIKSLQKAHFGL--RMQKATQQLGNTATLKATRRDIARAKTILAE 60
>sp|B9MB81|RL29_ACIET 50S ribosomal protein L29 OS=Acidovorax ebreus (strain TPSY)
GN=rpmC PE=3 SV=1
Length = 65
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93
+Q D+ GLE+E +SL KA+ L RM QQL AT ++ +AR K I +
Sbjct: 8 RQKDVAGLEAEIKSLQKAHFGL--RMQKATQQLGNTATLKATRRDIARAKTILAE 60
>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2
Length = 1152
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTP 99
QN IE LE L++ N D+ R+ D +L A A AL+P + +P P P
Sbjct: 51 QNRIEQLEQ----LLEENHDIISRIKDSVLELTANAEGPPALLPYHTANGSWAVLPEPRP 106
Query: 100 PAGEAAKEDAK 110
+ +D +
Sbjct: 107 SFFSVSPQDCQ 117
>sp|A1TJ15|RL29_ACIAC 50S ribosomal protein L29 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpmC PE=3 SV=1
Length = 65
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93
+Q D+ GLE+E +SL KA+ L RM QQL T + +AR K I +
Sbjct: 8 RQKDVAGLEAEIKSLQKAHFGL--RMQKATQQLGNTGTLRTTRRDIARAKTILAE 60
>sp|A1VIQ8|RL29_POLNA 50S ribosomal protein L29 OS=Polaromonas naphthalenivorans
(strain CJ2) GN=rpmC PE=3 SV=1
Length = 67
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93
+Q D++GL++E + L KA+ L RM QQL +T S +AR K I +
Sbjct: 7 RQKDVDGLKAEVKELQKAHFGL--RMQKATQQLTNTSTLRSTRRAIARAKTILAE 59
>sp|A1RJI3|SYT_SHESW Threonine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=thrS
PE=3 SV=1
Length = 642
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DIE LE L K N D+ KR+ W++
Sbjct: 114 QDDIEALEKRMLQLAKTNYDVVKRVVSWQE 143
>sp|A4Y706|SYT_SHEPC Threonine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=thrS PE=3 SV=1
Length = 642
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DIE LE L K N D+ KR+ W++
Sbjct: 114 QDDIEALEKRMLQLAKTNYDVVKRVVSWQE 143
>sp|Q8EER9|SYT_SHEON Threonine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=thrS PE=3 SV=1
Length = 642
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DIE LE L K N D+ KR+ W++
Sbjct: 114 QDDIEALEKRMLELAKTNYDVVKRVVSWQE 143
>sp|Q12GW3|RL29_POLSJ 50S ribosomal protein L29 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpmC PE=3 SV=1
Length = 69
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93
+Q D+ GL++E + L KA+ L RM QQL +T S +AR K I +
Sbjct: 8 RQKDVAGLKTEVKELQKAHFGL--RMQKATQQLTNTSTLRSTRRSIARAKTILAE 60
>sp|A9BPS6|RL29_DELAS 50S ribosomal protein L29 OS=Delftia acidovorans (strain DSM
14801 / SPH-1) GN=rpmC PE=3 SV=1
Length = 65
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAIYGD 93
+Q D+ GLE+E +SL KA+ L RM QQL T + +AR K I +
Sbjct: 8 RQKDVAGLEAEVKSLQKAHFGL--RMQKATQQLGNTNTLRTTRRDIARAKTILAE 60
>sp|Q21RW6|RL29_RHOFD 50S ribosomal protein L29 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rpmC PE=3 SV=1
Length = 68
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 39 QQNDIEGLESEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLARLKAI 90
+Q D+ GL++E + L KA+ L RM QQL AT S +AR K I
Sbjct: 7 RQKDVAGLQAEVKELQKAHFGL--RMQKATQQLNNTATLRSTRRDIARAKTI 56
>sp|A1USI0|GLYA_BARBK Serine hydroxymethyltransferase OS=Bartonella bacilliformis (strain
ATCC 35685 / KC583) GN=glyA PE=3 SV=1
Length = 432
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 31 ALTLRSVKQQNDIEGLE----SEKESLVKANKDLKKRMWDWKQQLYAEATTESALVPLAR 86
A LR Q DIE +E K L+ A R+WDWK+ + E + E +
Sbjct: 153 AYGLRQEDQLLDIESVERLAKEHKPKLIFAGGTAYSRIWDWKR--FREISDEVGAYLVVD 210
Query: 87 LKAIYGDV-----PTPTPPA 101
+ I G V P+P P A
Sbjct: 211 MAHIAGLVAGGVHPSPIPHA 230
>sp|Q0HV45|SYT_SHESR Threonine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=thrS PE=3
SV=1
Length = 642
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q DIE LE L K N D+ KR+ W++
Sbjct: 114 QEDIEALEKRMLELAKTNYDVVKRVVSWQE 143
>sp|Q0HIT9|SYT_SHESM Threonine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=thrS PE=3
SV=1
Length = 642
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q DIE LE L K N D+ KR+ W++
Sbjct: 114 QEDIEALEKRMLELAKTNYDVVKRVVSWQE 143
>sp|A0KWV4|SYT_SHESA Threonine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=thrS
PE=3 SV=1
Length = 642
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q DIE LE L K N D+ KR+ W++
Sbjct: 114 QEDIEALEKRMLELAKTNYDVVKRVVSWQE 143
>sp|Q924K2|FAF1_RAT FAS-associated factor 1 OS=Rattus norvegicus GN=Faf1 PE=2 SV=1
Length = 649
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 3 LANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESL--VKANKDL 60
+ + +N + I NT V+ ++ AA+ + S +QQ DI+ E E+E+ VK +D
Sbjct: 454 MGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFSAQQQEDIKD-EDEREARENVKREQDE 512
Query: 61 KKRM 64
R+
Sbjct: 513 AYRL 516
>sp|A9L2Q9|SYT_SHEB9 Threonine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=thrS
PE=3 SV=1
Length = 642
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DI+ LE L K N D+ KR+ W++
Sbjct: 114 QDDIDALEKRMLQLAKTNYDVVKRVVSWQE 143
>sp|A6WNH2|SYT_SHEB8 Threonine--tRNA ligase OS=Shewanella baltica (strain OS185) GN=thrS
PE=3 SV=1
Length = 642
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DI+ LE L K N D+ KR+ W++
Sbjct: 114 QDDIDALEKRMLQLAKTNYDVVKRVVSWQE 143
>sp|A3D4I2|SYT_SHEB5 Threonine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=thrS PE=3 SV=1
Length = 642
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DI+ LE L K N D+ KR+ W++
Sbjct: 114 QDDIDALEKRMLQLAKTNYDVVKRVVSWQE 143
>sp|B8EES6|SYT_SHEB2 Threonine--tRNA ligase OS=Shewanella baltica (strain OS223) GN=thrS
PE=3 SV=1
Length = 642
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 40 QNDIEGLESEKESLVKANKDLKKRMWDWKQ 69
Q+DI+ LE L K N D+ KR+ W++
Sbjct: 114 QDDIDALEKRMLQLAKTNYDVVKRVVSWQE 143
>sp|P54731|FAF1_MOUSE FAS-associated factor 1 OS=Mus musculus GN=Faf1 PE=1 SV=2
Length = 649
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 3 LANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESL--VKANKDL 60
+ + +N + I NT V+ ++ AA+ + S +QQ DI+ E E+E+ VK +D
Sbjct: 454 MGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFSAQQQEDIKD-EDEREARENVKREQDE 512
Query: 61 KKRM 64
R+
Sbjct: 513 AYRL 516
>sp|Q2GBX1|SYT_NOVAD Threonine--tRNA ligase OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=thrS PE=3 SV=1
Length = 664
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 42 DIEGLESEKESLVKANKDLKKRMWD-------WKQQ 70
D+ +E+E ++ ANK L++ +W WKQQ
Sbjct: 121 DLPAIEAEMRKIIAANKPLRREVWSREQLISRWKQQ 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.124 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,460,853
Number of Sequences: 539616
Number of extensions: 1232994
Number of successful extensions: 4565
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 4543
Number of HSP's gapped (non-prelim): 53
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)