Query 033502
Match_columns 118
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2137 OraA Uncharacterized p 57.7 5.4 0.00012 30.7 1.1 31 88-118 33-63 (174)
2 PF14615 Rsa3: Ribosome-assemb 57.6 4.3 9.2E-05 25.8 0.4 22 90-113 1-22 (47)
3 PF07131 DUF1382: Protein of u 52.4 15 0.00033 25.2 2.5 23 79-101 28-50 (61)
4 PF09803 DUF2346: Uncharacteri 47.8 19 0.00042 24.8 2.5 37 64-101 31-67 (80)
5 PF00351 Biopterin_H: Biopteri 41.0 24 0.00052 30.3 2.5 29 71-100 47-77 (332)
6 PF04652 DUF605: Vta1 like; I 36.1 30 0.00064 27.6 2.2 25 84-108 38-63 (380)
7 COG1105 FruK Fructose-1-phosph 31.1 45 0.00098 28.0 2.6 32 73-104 101-132 (310)
8 PF03385 DUF288: Protein of un 29.9 14 0.00031 32.5 -0.5 42 64-118 131-175 (390)
9 cd05143 Barstar_SaI14_like Bar 27.8 53 0.0012 22.9 2.1 28 88-115 11-39 (88)
10 cd05141 Barstar_evA4336-like B 27.4 54 0.0012 21.5 2.0 27 89-115 12-38 (81)
11 PHA01513 mnt Mnt 27.1 38 0.00083 23.9 1.3 29 73-101 49-77 (82)
12 cd00489 Barstar_like Barstar i 26.9 56 0.0012 22.0 2.1 27 89-115 12-38 (85)
13 PRK14136 recX recombination re 26.3 26 0.00057 29.8 0.4 27 92-118 179-205 (309)
14 PF01337 Barstar: Barstar (bar 26.2 72 0.0016 20.6 2.4 27 89-115 12-38 (90)
15 PRK09248 putative hydrolase; V 23.4 27 0.00059 26.2 0.0 8 78-85 238-245 (246)
16 cd05142 Barstar Barstar is an 23.1 70 0.0015 21.7 2.0 27 89-115 13-39 (87)
17 PLN02294 cytochrome c oxidase 22.8 67 0.0015 25.6 2.1 30 73-106 63-92 (174)
18 KOG3046 Transcription factor, 22.7 61 0.0013 25.4 1.8 21 88-110 111-131 (147)
19 PF06570 DUF1129: Protein of u 22.4 91 0.002 23.4 2.7 28 84-112 23-58 (206)
20 KOG3693 Uncharacterized conser 22.4 1.2E+02 0.0027 30.0 4.1 42 1-42 205-248 (1117)
21 PF08854 DUF1824: Domain of un 22.1 69 0.0015 23.9 1.9 31 81-117 14-44 (125)
22 PF15546 DUF4653: Domain of un 21.6 1.1E+02 0.0024 25.6 3.2 27 19-45 123-150 (239)
No 1
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=57.73 E-value=5.4 Score=30.69 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhccccC
Q 033502 88 TQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118 (118)
Q Consensus 88 TeKFr~hl~~KLskkD~fGd~leeVV~VCte 118 (118)
...++.+|-.||.++.+.-+-+|+|++.|++
T Consensus 33 R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~ 63 (174)
T COG2137 33 RDRSEKELRRKLAKKEFSEEIIEEVIDRLAE 63 (174)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3567789999999998888889999999864
No 2
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=57.63 E-value=4.3 Score=25.85 Aligned_cols=22 Identities=41% Similarity=0.848 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhcccccchhhhh
Q 033502 90 KFRTHLLNKLAKKDMFGDSLEDVV 113 (118)
Q Consensus 90 KFr~hl~~KLskkD~fGd~leeVV 113 (118)
+|+..-|+++. +.|||+||++-
T Consensus 1 ~f~~~yl~~~t--~efgdDLd~lR 22 (47)
T PF14615_consen 1 EFRNFYLQRLT--DEFGDDLDELR 22 (47)
T ss_pred ChHHHHHHHHH--HHHHHHHHHHh
Confidence 36667777654 57888888863
No 3
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=52.39 E-value=15 Score=25.21 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.8
Q ss_pred CCchhhhHHHHHHHHHHHHHhhh
Q 033502 79 PIPEFADSETQKFRTHLLNKLAK 101 (118)
Q Consensus 79 PIPEFAe~ETeKFr~hl~~KLsk 101 (118)
|||=-+|.|-+.|-.++.+||.+
T Consensus 28 piPv~~dee~~~L~s~~~~kLe~ 50 (61)
T PF07131_consen 28 PIPVVTDEEFHTLSSQLSQKLER 50 (61)
T ss_pred ccccccHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999985
No 4
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=47.82 E-value=19 Score=24.78 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=28.0
Q ss_pred cccchhccccccCCCCCchhhhHHHHHHHHHHHHHhhh
Q 033502 64 FRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAK 101 (118)
Q Consensus 64 ~~~~v~Raa~ykfPDPIPEFAe~ETeKFr~hl~~KLsk 101 (118)
+.++|..+..+.||..-|+ -..|.++|+.++.+|-.+
T Consensus 31 f~~~v~~~~~~~~ppe~~~-~~~ele~~~~~~~~k~~~ 67 (80)
T PF09803_consen 31 FEKWVIKRKRELYPPENEE-IREELEEFKEELRKKREE 67 (80)
T ss_pred HHHHhHHHhcccCCCCCcc-cHHHHHHHHHHHHHHHHH
Confidence 3457777778888888887 678899999988776543
No 5
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=40.95 E-value=24 Score=30.28 Aligned_cols=29 Identities=38% Similarity=0.693 Sum_probs=18.0
Q ss_pred cccccCCCCCchh--hhHHHHHHHHHHHHHhh
Q 033502 71 AAEYKFPDPIPEF--ADSETQKFRTHLLNKLA 100 (118)
Q Consensus 71 aa~ykfPDPIPEF--Ae~ETeKFr~hl~~KLs 100 (118)
|.+||+.||||.. .+.|.+-.|. +++||.
T Consensus 47 A~~~k~g~pip~v~YT~eE~~tW~~-v~~rl~ 77 (332)
T PF00351_consen 47 AFNYKHGDPIPRVEYTEEEHATWRT-VYRRLM 77 (332)
T ss_dssp HHH--TTSTTSGGG--HHHHHHHHH-HHHHHH
T ss_pred HHhccccCCCCcccCCHHHHHHHHH-HHHHHH
Confidence 4599999999964 5677766664 555554
No 6
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=36.14 E-value=30 Score=27.56 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHhhh-hcccccc
Q 033502 84 ADSETQKFRTHLLNKLAK-KDMFGDS 108 (118)
Q Consensus 84 Ae~ETeKFr~hl~~KLsk-kD~fGd~ 108 (118)
.+.|...|-.+||.+|++ |...||.
T Consensus 38 ~~~e~~~~~~~Ll~~lE~~K~~~~~~ 63 (380)
T PF04652_consen 38 RSKECRQFLTSLLDKLEKMKAELGDN 63 (380)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCT---
T ss_pred CChhHHHHHHHHHHHHHHhhhccCcH
Confidence 788999999999999998 7777754
No 7
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.08 E-value=45 Score=28.02 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.6
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHHHhhhhcc
Q 033502 73 EYKFPDPIPEFADSETQKFRTHLLNKLAKKDM 104 (118)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hl~~KLskkD~ 104 (118)
++.+.+|=|+..++|-+.|.+++.+.|.+.|+
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~ 132 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDI 132 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccCCE
Confidence 89999999999999999999999988888774
No 8
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=29.89 E-value=14 Score=32.54 Aligned_cols=42 Identities=33% Similarity=0.639 Sum_probs=26.2
Q ss_pred cccchhccccccCC--CCCchhhhHHHHHHHHHHHHHhhhh-cccccchhhhhccccC
Q 033502 64 FRNHICRAAEYKFP--DPIPEFADSETQKFRTHLLNKLAKK-DMFGDSLEDVVGICTE 118 (118)
Q Consensus 64 ~~~~v~Raa~ykfP--DPIPEFAe~ETeKFr~hl~~KLskk-D~fGd~leeVV~VCte 118 (118)
.+++-|||..-.|- ||.-+- .+-.+|..|| ++||| +|+.|.|
T Consensus 131 ~R~vNCRRm~leF~lvdp~~~~---------~~~~~ra~qKlnyFGD----l~~WC~e 175 (390)
T PF03385_consen 131 SRDVNCRRMHLEFELVDPKKEE---------SQNIKRAEQKLNYFGD----LVDWCNE 175 (390)
T ss_pred ccccccccccceeeccCCcccc---------cHHHHHHHHHHHhhch----HHHHHhc
Confidence 46789999966554 444321 2334566664 99997 5666754
No 9
>cd05143 Barstar_SaI14_like Barstar_SaI14_like contains sequences that are similar to SaI14, an RNAase inhibitor, which are members of the Barstar family. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. The sequences in this subfamily are mostly uncharacterized, but believed to have a similar function and role.
Probab=27.82 E-value=53 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhh-cccccchhhhhcc
Q 033502 88 TQKFRTHLLNKLAKK-DMFGDSLEDVVGI 115 (118)
Q Consensus 88 TeKFr~hl~~KLskk-D~fGd~leeVV~V 115 (118)
.+.|-.+|-+.|.-. ++||..+|++.|.
T Consensus 11 ~~~f~~~l~~~l~~p~~~fG~NlDAL~D~ 39 (88)
T cd05143 11 LADFFCEIGEAINGEGGYFGPNLDALADC 39 (88)
T ss_pred HHHHHHHHHHHHCCCccccCCCHHHHHHH
Confidence 356777888888766 9999999998875
No 10
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=27.41 E-value=54 Score=21.48 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhcc
Q 033502 89 QKFRTHLLNKLAKKDMFGDSLEDVVGI 115 (118)
Q Consensus 89 eKFr~hl~~KLskkD~fGd~leeVV~V 115 (118)
+.|-..|-++|.--++||..+|+..|.
T Consensus 12 ~~~~~~l~~~l~fP~yfG~NlDAl~Dc 38 (81)
T cd05141 12 AALLDALAAALDFPSWFGHNWDALADC 38 (81)
T ss_pred HHHHHHHHHHcCCCccccCCHHHHHHH
Confidence 345566667775579999999998764
No 11
>PHA01513 mnt Mnt
Probab=27.12 E-value=38 Score=23.93 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.7
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHHHhhh
Q 033502 73 EYKFPDPIPEFADSETQKFRTHLLNKLAK 101 (118)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hl~~KLsk 101 (118)
.+.|-|-.-.||+++.+|||+-++.-|.+
T Consensus 49 ~~g~~~~~~~~a~~~~~~~~~~~~~~l~~ 77 (82)
T PHA01513 49 VTGYRDDAERLADEQSELVKKMVFDTLKD 77 (82)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778889999999999999987753
No 12
>cd00489 Barstar_like Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it, thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=26.95 E-value=56 Score=22.01 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhcc
Q 033502 89 QKFRTHLLNKLAKKDMFGDSLEDVVGI 115 (118)
Q Consensus 89 eKFr~hl~~KLskkD~fGd~leeVV~V 115 (118)
+.|-..|.++|.--|+||..+|+..|+
T Consensus 12 ~~f~~~~~~~l~fp~~fG~NlDAl~D~ 38 (85)
T cd00489 12 EDFHARLKKKLGFPDYYGHNLDALWDC 38 (85)
T ss_pred HHHHHHHHHHhCCccccCCCHHHHHHH
Confidence 346666777775579999999998775
No 13
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.35 E-value=26 Score=29.79 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhcccccchhhhhccccC
Q 033502 92 RTHLLNKLAKKDMFGDSLEDVVGICTE 118 (118)
Q Consensus 92 r~hl~~KLskkD~fGd~leeVV~VCte 118 (118)
+.||.+||.++.+=.+.+++||+-|.+
T Consensus 179 e~ELr~KL~kkG~~ee~IE~VIerLke 205 (309)
T PRK14136 179 RAELARKLAPYADESDSVEPLLDALER 205 (309)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457889999888878899999987753
No 14
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=26.18 E-value=72 Score=20.59 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhcc
Q 033502 89 QKFRTHLLNKLAKKDMFGDSLEDVVGI 115 (118)
Q Consensus 89 eKFr~hl~~KLskkD~fGd~leeVV~V 115 (118)
+.|-..|.++|.=-|+||..+|+.-|.
T Consensus 12 ~~~~~~l~~~l~fP~yfG~NlDAl~D~ 38 (90)
T PF01337_consen 12 EDFYDALAEALDFPDYFGRNLDALWDC 38 (90)
T ss_dssp HHHHHHHHHHTT--TTSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCchhcCCHHHHHHH
Confidence 346666777775579999999998763
No 15
>PRK09248 putative hydrolase; Validated
Probab=23.36 E-value=27 Score=26.23 Aligned_cols=8 Identities=88% Similarity=1.522 Sum_probs=6.0
Q ss_pred CCCchhhh
Q 033502 78 DPIPEFAD 85 (118)
Q Consensus 78 DPIPEFAe 85 (118)
-||||||+
T Consensus 238 ~~~~~~~~ 245 (246)
T PRK09248 238 APIPEFAD 245 (246)
T ss_pred ccchhhcc
Confidence 46789986
No 16
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=23.11 E-value=70 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhcc
Q 033502 89 QKFRTHLLNKLAKKDMFGDSLEDVVGI 115 (118)
Q Consensus 89 eKFr~hl~~KLskkD~fGd~leeVV~V 115 (118)
+.|-..|-++|.=.++||..+|+.-|+
T Consensus 13 ~~f~~~l~~~~~~p~~~G~NlDAl~D~ 39 (87)
T cd05142 13 EDLHQILKKELALPEYYGENLDALWDC 39 (87)
T ss_pred HHHHHHHHHHhCCchhcCCCHHHHHHH
Confidence 346666666666579999999998774
No 17
>PLN02294 cytochrome c oxidase subunit Vb
Probab=22.78 E-value=67 Score=25.63 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=24.7
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHHHhhhhcccc
Q 033502 73 EYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFG 106 (118)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hl~~KLskkD~fG 106 (118)
+=+.+||+| +.|---|.||+-||.-+|.|-
T Consensus 63 ~~~~~d~~~----~ATGLER~ELla~leG~D~Fd 92 (174)
T PLN02294 63 KKRVEDVMP----IATGHEREELEAELEGRKLLD 92 (174)
T ss_pred cccCCCchh----hccchHHHHHHHHHcCCCccc
Confidence 456788876 778888999999999888884
No 18
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=22.67 E-value=61 Score=25.41 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhcccccchh
Q 033502 88 TQKFRTHLLNKLAKKDMFGDSLE 110 (118)
Q Consensus 88 TeKFr~hl~~KLskkD~fGd~le 110 (118)
-.|||.||+++|++ .|-|.++
T Consensus 111 ~K~fr~~l~eEl~q--~fPe~~~ 131 (147)
T KOG3046|consen 111 FKKFRKHLAEELSQ--EFPELVD 131 (147)
T ss_pred HHHHHHHHHHHHHH--HChHHHH
Confidence 36899999999886 3444433
No 19
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.42 E-value=91 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.495 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHhhh--------hcccccchhhh
Q 033502 84 ADSETQKFRTHLLNKLAK--------KDMFGDSLEDV 112 (118)
Q Consensus 84 Ae~ETeKFr~hl~~KLsk--------kD~fGd~leeV 112 (118)
.|+|.|..-.+|+..|=+ +|+|| +..+-
T Consensus 23 ~e~~~e~~L~eil~~LleaQk~G~tA~~lfG-~P~~~ 58 (206)
T PF06570_consen 23 SEEEIEELLEEILPHLLEAQKKGKTARQLFG-DPKEY 58 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCcHHHHcC-CHHHH
Confidence 578999999999999862 39999 76553
No 20
>KOG3693 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.36 E-value=1.2e+02 Score=29.97 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=28.4
Q ss_pred CccccccccccCCCCCCCCCcccc--eeeeeccCCCcccCccee
Q 033502 1 MACYCNRSLISSKLDPCSPFSSSS--LRLAFHRNSSVLLGGGIK 42 (118)
Q Consensus 1 ~~~~~~~~~~s~~~~~~s~~ssS~--lrlsf~~~sS~~~~t~~~ 42 (118)
||||-...+....-.+-++=.++. +|++|....|-++.+|.-
T Consensus 205 ~aC~Tgs~~~h~fasd~~~r~~~sRn~~~~~sa~~S~~l~~pFl 248 (1117)
T KOG3693|consen 205 SACYTGSESDHQFASDTSPRPSSSRNDSFGPSAAPSTSLSPPFL 248 (1117)
T ss_pred cccccCCccccccCCCCCCCCccccccccCcccCcccccCCCCC
Confidence 578887766666555555555555 667777777777777763
No 21
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=22.08 E-value=69 Score=23.93 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=22.7
Q ss_pred chhhhHHHHHHHHHHHHHhhhhcccccchhhhhcccc
Q 033502 81 PEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICT 117 (118)
Q Consensus 81 PEFAe~ETeKFr~hl~~KLskkD~fGd~leeVV~VCt 117 (118)
|.....|.++-|.+|..-.+.-|. ..+|||+
T Consensus 14 p~ls~~~~~~Lr~~L~~~~~~sd~------~~lGIcA 44 (125)
T PF08854_consen 14 PQLSPSQRKKLRQALRLLASNSDW------FTLGICA 44 (125)
T ss_dssp ----HHHHHHHHHHHHHHHHTSSE------EEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhccCc------eEEEeec
Confidence 778899999999999998888776 3677775
No 22
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=21.59 E-value=1.1e+02 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=17.6
Q ss_pred CCcccceeee-eccCCCcccCcceeecc
Q 033502 19 PFSSSSLRLA-FHRNSSVLLGGGIKLHD 45 (118)
Q Consensus 19 ~~ssS~lrls-f~~~sS~~~~t~~~lh~ 45 (118)
.|.||+|-+- +..++-+.+.|+...++
T Consensus 123 gYaSsSlSidS~~ssp~~~~~~~~~p~p 150 (239)
T PF15546_consen 123 GYASSSLSIDSPSSSPESACGTPWGPGP 150 (239)
T ss_pred cccccccccCCCCCCCCCcCCCCCCCCC
Confidence 5888887765 55555667888774333
Done!