Query 033502
Match_columns 118
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 04:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j8u_A Phenylalanine-4-hydroxy 29.3 28 0.00097 28.6 2.3 30 70-100 62-93 (325)
2 1phz_A Protein (phenylalanine 29.3 31 0.001 29.1 2.6 29 71-100 165-195 (429)
3 1toh_A Tyroh, tyrosine hydroxy 27.2 33 0.0011 28.5 2.3 30 70-100 55-86 (343)
4 3dfg_A Xcrecx, regulatory prot 25.3 16 0.00053 25.6 0.1 26 92-117 34-59 (162)
5 1mnt_A MNT repressor; transcri 25.0 14 0.00049 23.7 -0.1 25 76-100 51-75 (76)
6 3im4_C Dual specificity A kina 24.1 25 0.00086 22.0 0.9 22 80-101 2-23 (45)
7 2lxl_A Vacuolar protein sortin 23.7 36 0.0012 25.1 1.8 24 85-108 53-77 (183)
8 2cx6_A Hypothetical protein YH 22.7 51 0.0017 21.3 2.2 27 89-115 15-41 (90)
9 2za4_B Barstar; protein-protei 21.8 55 0.0019 20.7 2.2 27 89-115 15-41 (90)
10 3d5l_A Regulatory protein RECX 21.1 21 0.00071 26.1 0.1 26 92-117 78-103 (221)
11 3oak_C Transcription elongatio 20.4 36 0.0012 19.8 1.0 16 93-108 4-20 (31)
12 3e3v_A Regulatory protein RECX 20.2 17 0.00058 25.8 -0.6 26 92-117 35-60 (177)
No 1
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=29.31 E-value=28 Score=28.63 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=23.0
Q ss_pred ccccccCCCCCc--hhhhHHHHHHHHHHHHHhh
Q 033502 70 RAAEYKFPDPIP--EFADSETQKFRTHLLNKLA 100 (118)
Q Consensus 70 Raa~ykfPDPIP--EFAe~ETeKFr~hl~~KLs 100 (118)
-|.+|++.|||| +.-+.|.+-.| .|++++.
T Consensus 62 ~a~~y~~g~~~~~v~YT~eE~~~W~-~l~~r~~ 93 (325)
T 1j8u_A 62 IAYNYRHGQPIPRVEYMEEEKKTWG-TVFKTLK 93 (325)
T ss_dssp HHHHCCTTSCCCCCCCCHHHHHHHH-HHHHHHH
T ss_pred HHHhCcCCCCCCcccCCHHHHHHHH-HHHHHHH
Confidence 345999999999 99999988876 4455544
No 2
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=29.28 E-value=31 Score=29.10 Aligned_cols=29 Identities=34% Similarity=0.708 Sum_probs=22.4
Q ss_pred cccccCCCCCc--hhhhHHHHHHHHHHHHHhh
Q 033502 71 AAEYKFPDPIP--EFADSETQKFRTHLLNKLA 100 (118)
Q Consensus 71 aa~ykfPDPIP--EFAe~ETeKFr~hl~~KLs 100 (118)
|.+|++.|||| +.-+.|.+-.|. +++++.
T Consensus 165 a~~~~~g~~~~~v~Yt~~e~~~W~~-l~~~~~ 195 (429)
T 1phz_A 165 AYNYRHGQPIPRVEYTEEEKQTWGT-VFRTLK 195 (429)
T ss_dssp HHTCCTTSCCCCCCCCHHHHHHHHH-HHHHHH
T ss_pred HHhCcCCCCCCcccCCHHHHHHHHH-HHHHHH
Confidence 34999999999 999999888763 445544
No 3
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=27.20 E-value=33 Score=28.49 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=23.0
Q ss_pred ccccccCCCCCc--hhhhHHHHHHHHHHHHHhh
Q 033502 70 RAAEYKFPDPIP--EFADSETQKFRTHLLNKLA 100 (118)
Q Consensus 70 Raa~ykfPDPIP--EFAe~ETeKFr~hl~~KLs 100 (118)
-|.+|++.|||| +.-+.|.+-.| .|++++.
T Consensus 55 ~a~~y~~g~~~p~v~YT~eE~~~W~-~l~~r~~ 86 (343)
T 1toh_A 55 IAFQYKHGEPIPHVEYTAEEIATWK-EVYVTLK 86 (343)
T ss_dssp HHHHCCTTSCCCCCCCCHHHHHHHH-HHHHHHH
T ss_pred HHHhCcCCCCCCcCCCCHHHHHHHH-HHHHHHH
Confidence 355999999999 89999988876 3444444
No 4
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.27 E-value=16 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhcccccchhhhhcccc
Q 033502 92 RTHLLNKLAKKDMFGDSLEDVVGICT 117 (118)
Q Consensus 92 r~hl~~KLskkD~fGd~leeVV~VCt 117 (118)
+.+|-+||.++++=.+.+++|++-|.
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l~ 59 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERLA 59 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45788899988887888999987653
No 5
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=25.04 E-value=14 Score=23.73 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=12.7
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhh
Q 033502 76 FPDPIPEFADSETQKFRTHLLNKLA 100 (118)
Q Consensus 76 fPDPIPEFAe~ETeKFr~hl~~KLs 100 (118)
|.|=.=++|+.+.|+||..++..|.
T Consensus 51 ~~~~a~~~a~~~~e~~~~~~~~~~~ 75 (76)
T 1mnt_A 51 YRNDAERLADEQSELVKKMVFDTLK 75 (76)
T ss_dssp CCCSHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHccHHHHHHHHHHHhc
Confidence 4555556999999999999988764
No 6
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=24.05 E-value=25 Score=22.03 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=12.2
Q ss_pred CchhhhHHHHHHHHHHHHHhhh
Q 033502 80 IPEFADSETQKFRTHLLNKLAK 101 (118)
Q Consensus 80 IPEFAe~ETeKFr~hl~~KLsk 101 (118)
.|.|-.-|+.|=+++|.|+..+
T Consensus 2 ~~K~V~~~~D~aqEEMAWqIA~ 23 (45)
T 3im4_C 2 SPEFVQGNTDEAQEELAWKIAK 23 (45)
T ss_dssp ---------CHHHHHHHHHHHH
T ss_pred CCccccCCchHHHHHHHHHHHH
Confidence 3788888999999999999987
No 7
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=23.67 E-value=36 Score=25.07 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHhhh-hcccccc
Q 033502 85 DSETQKFRTHLLNKLAK-KDMFGDS 108 (118)
Q Consensus 85 e~ETeKFr~hl~~KLsk-kD~fGd~ 108 (118)
..|..+|...||.+|++ |...+++
T Consensus 53 ~~e~~~f~~~LLd~LE~~K~~~~~~ 77 (183)
T 2lxl_A 53 TPECRKFLSKLMDQLEALKKQLGDN 77 (183)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ChhHHHHHHHHHHHHHHHHHhccch
Confidence 57889999999999997 6556654
No 8
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=22.66 E-value=51 Score=21.28 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhcc
Q 033502 89 QKFRTHLLNKLAKKDMFGDSLEDVVGI 115 (118)
Q Consensus 89 eKFr~hl~~KLskkD~fGd~leeVV~V 115 (118)
+.|-..+-++|.=-++||..+|+.-|.
T Consensus 15 ~~f~~~~~~~~~~p~~fG~NlDAL~D~ 41 (90)
T 2cx6_A 15 EDFYRDFSQTFGLAKDKVRDLDSLWDV 41 (90)
T ss_dssp HHHHHHHHHHTTCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCchhhCCCHHHHHHH
Confidence 457777777776679999999998764
No 9
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=21.82 E-value=55 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhcccccchhhhhcc
Q 033502 89 QKFRTHLLNKLAKKDMFGDSLEDVVGI 115 (118)
Q Consensus 89 eKFr~hl~~KLskkD~fGd~leeVV~V 115 (118)
+.|-..+-++|.=-|+||..+|+..|.
T Consensus 15 ~~~~~~l~~~l~~P~~fG~NlDAL~D~ 41 (90)
T 2za4_B 15 SDLHQTLKKELALPEYYGENLDALWAA 41 (90)
T ss_dssp HHHHHHHHHHTTCCTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence 446666777775579999999998764
No 10
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.14 E-value=21 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhcccccchhhhhcccc
Q 033502 92 RTHLLNKLAKKDMFGDSLEDVVGICT 117 (118)
Q Consensus 92 r~hl~~KLskkD~fGd~leeVV~VCt 117 (118)
+.+|-+||.++.+=.+.+++|++-|.
T Consensus 78 ~~EL~~KL~~kg~~~e~i~~vl~~L~ 103 (221)
T 3d5l_A 78 ESDIVKKLKEIDTPEEFVEPILKKLR 103 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45778888888766788888887664
No 11
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=20.41 E-value=36 Score=19.82 Aligned_cols=16 Identities=44% Similarity=0.877 Sum_probs=13.5
Q ss_pred HHHHHHhhh-hcccccc
Q 033502 93 THLLNKLAK-KDMFGDS 108 (118)
Q Consensus 93 ~hl~~KLsk-kD~fGd~ 108 (118)
+||-..|++ .++|||-
T Consensus 4 ~~~~~aledm~eiFGdG 20 (31)
T 3oak_C 4 THMSDKIDEMYDIFGDG 20 (31)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred hhHHHHHHHHHHHhCCC
Confidence 588888988 8999985
No 12
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.22 E-value=17 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhcccccchhhhhcccc
Q 033502 92 RTHLLNKLAKKDMFGDSLEDVVGICT 117 (118)
Q Consensus 92 r~hl~~KLskkD~fGd~leeVV~VCt 117 (118)
+.+|-+||.++++=.+.+++||+-|.
T Consensus 35 ~~EL~~KL~~kg~~~~~ie~vl~~L~ 60 (177)
T 3e3v_A 35 RKEVEDKLRSLDIHEDYISEIINKLI 60 (177)
T ss_dssp HHHHHTTSGGGTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45778888888777778888887653
Done!