Query 033502
Match_columns 118
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 04:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033502.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033502hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iy1a1 d.3.1.7 (A:419-643) Se 35.3 6.9 0.0005 25.5 1.4 36 65-100 186-221 (225)
2 d2q22a1 d.365.1.1 (A:8-138) Un 25.8 15 0.0011 24.7 1.8 32 80-117 20-51 (131)
3 d1th0a_ d.3.1.7 (A:) Sentrin-s 25.6 16 0.0011 23.7 1.8 36 65-100 186-221 (226)
4 d1ylia1 d.38.1.1 (A:11-152) Pu 25.3 17 0.0013 23.2 2.0 25 66-91 111-135 (142)
5 d1c7na_ c.67.1.3 (A:) Cystalys 23.1 21 0.0015 24.6 2.2 21 73-101 61-81 (394)
6 d1c5ch2 b.1.1.2 (H:114-230) Im 23.1 9.7 0.0007 22.5 0.3 17 63-80 21-37 (103)
7 g2bi6.2 g.3.12.1 (L:,H:1-7,H:3 20.2 14 0.001 19.8 0.6 10 2-13 15-24 (28)
8 d1hnra_ a.155.1.1 (A:) H1 prot 19.6 14 0.001 21.3 0.5 11 70-80 3-13 (47)
9 d1np6a_ c.37.1.10 (A:) Molybdo 17.5 32 0.0023 19.8 1.9 36 67-102 133-168 (170)
10 d1hwxa2 c.58.1.1 (A:1-208) Glu 16.9 70 0.0051 22.7 4.0 64 37-109 89-162 (208)
No 1
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.34 E-value=6.9 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=29.6
Q ss_pred ccchhccccccCCCCCchhhhHHHHHHHHHHHHHhh
Q 033502 65 RNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLA 100 (118)
Q Consensus 65 ~~~v~Raa~ykfPDPIPEFAe~ETeKFr~hl~~KLs 100 (118)
+=|||.-+++-..++.-.|.+.....||.+|...|-
T Consensus 186 Gvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~ 221 (225)
T d2iy1a1 186 GMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 221 (225)
T ss_dssp HHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 347788888888886668999999999999998764
No 2
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=25.78 E-value=15 Score=24.72 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=26.5
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhcccccchhhhhcccc
Q 033502 80 IPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICT 117 (118)
Q Consensus 80 IPEFAe~ETeKFr~hl~~KLskkD~fGd~leeVV~VCt 117 (118)
-|+....|.+|-|.+|......-|. ..+|||+
T Consensus 20 aP~Ls~~q~~~L~~eL~~~~~~adw------~tiGImA 51 (131)
T d2q22a1 20 APILKPSEKESVRRALILITKLSDY------QILGICA 51 (131)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTSSE------EEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCc------EEEEEec
Confidence 3788899999999999999988776 3677775
No 3
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.58 E-value=16 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=29.7
Q ss_pred ccchhccccccCCCCCchhhhHHHHHHHHHHHHHhh
Q 033502 65 RNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLA 100 (118)
Q Consensus 65 ~~~v~Raa~ykfPDPIPEFAe~ETeKFr~hl~~KLs 100 (118)
+=|||.-+++-..++.-.|.+.+...||.+|...|=
T Consensus 186 Gvfvl~~~~~~~~~~~~~~tq~di~~~R~~i~~el~ 221 (226)
T d1th0a_ 186 GMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEIL 221 (226)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 457888888887876668999999999999987664
No 4
>d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase HI0827 {Haemophilus influenzae [TaxId: 727]}
Probab=25.32 E-value=17 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=17.7
Q ss_pred cchhccccccCCCCCchhhhHHHHHH
Q 033502 66 NHICRAAEYKFPDPIPEFADSETQKF 91 (118)
Q Consensus 66 ~~v~Raa~ykfPDPIPEFAe~ETeKF 91 (118)
-||+...+-+ |-|||+..+.|-||-
T Consensus 111 tfV~vd~~gk-p~~VP~~~~~e~e~~ 135 (142)
T d1ylia1 111 TFVAVDNNGR-SRTIPRENNQELEKA 135 (142)
T ss_dssp EEEEBCTTSC-BCCCCCTTCHHHHHH
T ss_pred EEEEECCCCC-EecCCCCCCccHHHH
Confidence 4666665555 899999887776654
No 5
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Probab=23.14 E-value=21 Score=24.60 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=14.3
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHHHhhh
Q 033502 73 EYKFPDPIPEFADSETQKFRTHLLNKLAK 101 (118)
Q Consensus 73 ~ykfPDPIPEFAe~ETeKFr~hl~~KLsk 101 (118)
.|.||+|+||+ |+.+.+.+++
T Consensus 61 ~~~Y~~g~~~L--------r~aia~~~~~ 81 (394)
T d1c7na_ 61 VLGYTGPTEEY--------KKTVKKWMKD 81 (394)
T ss_dssp CCSSBCCCHHH--------HHHHHHHHHH
T ss_pred CcCCCCCCHHH--------HHHHHHHHHH
Confidence 58899998865 5555555554
No 6
>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.07 E-value=9.7 Score=22.51 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=13.4
Q ss_pred ccccchhccccccCCCCC
Q 033502 63 SFRNHICRAAEYKFPDPI 80 (118)
Q Consensus 63 s~~~~v~Raa~ykfPDPI 80 (118)
....++|.+.+| ||+.|
T Consensus 21 ~~~tl~Cl~~~f-~P~~i 37 (103)
T d1c5ch2 21 GTAALGCLVKDY-FPEPV 37 (103)
T ss_dssp TEEEEEEEEEEE-BSSCC
T ss_pred CeEEEEEEEEeE-eCCCe
Confidence 456789998887 89876
No 7
>g2bi6.2 g.3.12.1 (L:,H:1-7,H:32-41) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=20.24 E-value=14 Score=19.79 Aligned_cols=10 Identities=60% Similarity=1.464 Sum_probs=7.4
Q ss_pred ccccccccccCC
Q 033502 2 ACYCNRSLISSK 13 (118)
Q Consensus 2 ~~~~~~~~~s~~ 13 (118)
.|||. |||||
T Consensus 15 kcycd--lispn 24 (28)
T g2bi6.2 15 KCYCD--LISPN 24 (28)
T ss_dssp SCEEC--CCCSS
T ss_pred eeeee--eeccc
Confidence 47885 78886
No 8
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=19.60 E-value=14 Score=21.32 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=8.8
Q ss_pred ccccccCCCCC
Q 033502 70 RAAEYKFPDPI 80 (118)
Q Consensus 70 Raa~ykfPDPI 80 (118)
|.++|+|+||-
T Consensus 3 rp~KY~y~~~~ 13 (47)
T d1hnra_ 3 RPAKYSYVDEN 13 (47)
T ss_dssp CSCCBEECCSS
T ss_pred CCCcccccCCC
Confidence 56799999883
No 9
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=17.51 E-value=32 Score=19.80 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=27.4
Q ss_pred chhccccccCCCCCchhhhHHHHHHHHHHHHHhhhh
Q 033502 67 HICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKK 102 (118)
Q Consensus 67 ~v~Raa~ykfPDPIPEFAe~ETeKFr~hl~~KLskk 102 (118)
.+.-+.++.++...|-|-..+.+.....+++.|+|+
T Consensus 133 v~~v~~~~~~~~~~~~~~~dd~~~iad~I~~~l~~~ 168 (170)
T d1np6a_ 133 VIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQ 168 (170)
T ss_dssp EEEEEESSCCCCSSEEEETTCHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccCCCCCcCCccCHHHHHHHHHHHHHHc
Confidence 344445777788888888778888888888888874
No 10
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.91 E-value=70 Score=22.69 Aligned_cols=64 Identities=19% Similarity=0.348 Sum_probs=36.8
Q ss_pred cCcceeeccCcch---hhhcc-------ccccccccccccchhccccccCCCCCchhhhHHHHHHHHHHHHHhhhhcccc
Q 033502 37 LGGGIKLHDSSTI---SKKAQ-------LSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFG 106 (118)
Q Consensus 37 ~~t~~~lh~SsT~---~~~~~-------l~~~~~~~s~~~~v~Raa~ykfPDPIPEFAe~ETeKFr~hl~~KLskkD~fG 106 (118)
.-+||+.|++.+. ..+++ +.-+||-..-...++--. +.-+.|.|++=......|.++++.|
T Consensus 89 ~kGGiR~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~---------~~s~~Eler~~r~f~~~L~~~~~ig 159 (208)
T d1hwxa2 89 CKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPK---------NYTDEDLEKITRRFTMELAKKGFIG 159 (208)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCGG---------GSCHHHHHHHHHHHHHHHHHTTCCB
T ss_pred cCCCceEChhhhHHHHHHHHHHHHHHHHhhcccccCccceeecCCC---------CCCHHHHHHHHHHHHHHhhcccccc
Confidence 5578889888754 33333 566777753333333222 2346677766666666776655555
Q ss_pred cch
Q 033502 107 DSL 109 (118)
Q Consensus 107 d~l 109 (118)
.++
T Consensus 160 p~~ 162 (208)
T d1hwxa2 160 PGV 162 (208)
T ss_dssp TTT
T ss_pred CCC
Confidence 443
Done!