Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 118
PLN03107 159
PLN03107, PLN03107, eukaryotic translation initiat
9e-78 PTZ00328 166
PTZ00328, PTZ00328, eukaryotic initiation factor 5
2e-37 TIGR00037 130
TIGR00037, eIF_5A, translation elongation factor I
2e-36 COG0231 131
COG0231, Efp, Translation elongation factor P (EF-
2e-24 PRK03999 129
PRK03999, PRK03999, translation initiation factor
6e-22 pfam01287 69
pfam01287, eIF-5a, Eukaryotic elongation factor 5A
4e-06 TIGR00038 184
TIGR00038, efp, translation elongation factor P
1e-04 PRK00529 186
PRK00529, PRK00529, elongation factor P; Validated
0.001 cd04468 69
cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translatio
0.003
>gnl|CDD|215580 PLN03107, PLN03107, eukaryotic translation initiation factor 5A; Provisional
Back Hide alignment and domain information
Score = 225 bits (576), Expect = 9e-78
Identities = 96/102 (94%), Positives = 97/102 (95%), Gaps = 1/102 (0%)
Query: 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
MSDEEHHFES ADAGASKT+PQQAGTIRK GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1 MSDEEHHFES-ADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 59
Query: 61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFV 102
V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFV
Sbjct: 60 VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFV 101
>gnl|CDD|140349 PTZ00328, PTZ00328, eukaryotic initiation factor 5a; Provisional
Back Show alignment and domain information
Score = 124 bits (311), Expect = 2e-37
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 1 MSDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
MSDE+H F + ASKT+P AG ++K GY+ I GRPCKV+++S SKTGKHGHAK
Sbjct: 1 MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 60
Query: 60 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED 99
V DIF G +LED PS+HN +VP V Y ++DI +
Sbjct: 61 IVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPN 100
>gnl|CDD|129148 TIGR00037, eIF_5A, translation elongation factor IF5A
Back Show alignment and domain information
Score = 120 bits (302), Expect = 2e-36
Identities = 45/87 (51%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
S T Q +R GY+VI GRPCK+V++STSK GKHGHAK V I IF GKKLE +
Sbjct: 1 MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVS 60
Query: 76 PSSHNCDVPHVTRTDYQLIDISEDGFV 102
PS+ +VP V R +YQ++ I G V
Sbjct: 61 PSTSKVEVPIVDRREYQVLAI-MGGMV 86
Recent work (2009) changed the view of eIF5A in eukaryotes and aIF5A in archaea, hypusine-containing proteins, from translation initiation factor to translation elongation factor [Protein synthesis, Translation factors]. Length = 130
>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 89.9 bits (224), Expect = 2e-24
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
A +RK YIVI G P VVE+S K GK G A ++F GKK+E +
Sbjct: 1 MAMISASELRKGLYIVIDGEPYVVVEISHVKPGKGG-AFVRVKLKNLFTGKKVEKTFKAD 59
Query: 79 HNCDVPHVTRTDYQLIDISEDGFV 102
+V V R Q + I D +V
Sbjct: 60 DKVEVAIVERKTAQYLYIDGDFYV 83
>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional
Back Show alignment and domain information
Score = 83.4 bits (207), Expect = 6e-22
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80
+ G +++ Y+VI G PCK+VE+S SK GKHG AK V I IF+G+K + P
Sbjct: 5 QVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAK 64
Query: 81 CDVPHVTRTDYQLIDISED 99
+VP + + Q++ I D
Sbjct: 65 VEVPIIEKKTGQVLSIMGD 83
>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Back Show alignment and domain information
Score = 41.0 bits (97), Expect = 4e-06
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 85 HVTRTDYQLIDISEDGFV 102
V RT+YQLIDIS DGF+
Sbjct: 1 IVKRTEYQLIDISGDGFL 18
eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast. Length = 69
>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P
Back Show alignment and domain information
Score = 38.6 bits (91), Expect = 1e-04
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHNCDV 83
+RK I + G P V+E K GK G A FV + ++ GK LE S +
Sbjct: 6 LRKGLVIELDGEPYVVLEFEHVKPGK-GQA---FVRVKLKNLLTGKVLEKTFRSGEKVEK 61
Query: 84 PHVTRTDYQLIDISEDGFVC 103
V + Q + D +V
Sbjct: 62 ADVEEREMQYLYKDGDSYVF 81
function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184
>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated
Back Show alignment and domain information
Score = 35.8 bits (84), Expect = 0.001
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
A +RK I I G P V+E K GK G A FV ++ G +E +
Sbjct: 4 ANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQA---FVRTKLKNLLTGSVVEKTFKAGDK 59
Query: 81 CDVPHVTRTDYQ 92
+ V R + Q
Sbjct: 60 VERADVERREMQ 71
>gnl|CDD|239914 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain
Back Show alignment and domain information
Score = 33.7 bits (78), Expect = 0.003
Identities = 12/17 (70%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Query: 86 VTRTDYQLIDISEDGFV 102
V RT+YQLIDI +DGF+
Sbjct: 1 VKRTEYQLIDI-DDGFL 16
eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed. Length = 69
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
118
PLN03107 159
eukaryotic translation initiation factor 5A; Provi
100.0 TIGR00037 130
eIF_5A translation initiation factor eIF-5A. Obser
100.0 PTZ00328 166
eukaryotic initiation factor 5a; Provisional
100.0 COG0231 131
Efp Translation elongation factor P (EF-P)/transla
100.0 PRK03999 129
translation initiation factor IF-5A; Provisional
100.0 PRK12426 185
elongation factor P; Provisional
100.0 PRK14578 187
elongation factor P; Provisional
100.0 PRK04542 189
elongation factor P; Provisional
100.0 KOG3271 156
consensus Translation initiation factor 5A (eIF-5A
99.98 TIGR02178 186
yeiP elongation factor P-like protein YeiP. This m
99.98 PRK00529 186
elongation factor P; Validated
99.97 TIGR00038 184
efp translation elongation factor P. function: inv
99.97 PF08207 58
EFP_N: Elongation factor P (EF-P) KOW-like domain;
99.88 PF01132 55
EFP: Elongation factor P (EF-P) OB domain; InterPr
98.88 cd04470 61
S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo
98.86 cd04463 55
S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin
98.58 PF01287 69
eIF-5a: Eukaryotic elongation factor 5A hypusine,
97.23 COG1499 355
NMD3 NMD protein affecting ribosome stability and
96.75 cd04467 57
S1_aIF5A S1_aIF5A: Archaeal translation Initiation
96.02 cd04468 69
S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati
93.65 cd04469 75
S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain.
86.1
>PLN03107 eukaryotic translation initiation factor 5A; Provisional
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Probab=100.00 E-value=3e-44 Score=266.70 Aligned_cols=112 Identities=85% Similarity=1.255 Sum_probs=109.5
Q ss_pred CCccccccccccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCc
Q 033503 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (118)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ 80 (118)
|+|++|+|+ +++||++.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++
T Consensus 1 ~~~~~~~~~-~~~~~~~~t~m~~~~~lKkG~~I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~ 79 (159)
T PLN03107 1 MSDEEHHFE-SADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHN 79 (159)
T ss_pred CCccccccc-ccccCCCceeccchHhccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCE
Confidence 899788999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEeeeeEEEeccCCCeeEeecC--CChHHH
Q 033503 81 CDVPHVTRTDYQLIDISEDGFVCSYFV--LSCSFY 113 (118)
Q Consensus 81 ve~~~ve~~~~qyly~d~d~~l~FMd~--etyeq~ 113 (118)
+++|+|++++|||||+|+++||+|||+ +|||||
T Consensus 80 ve~~~ve~~~~qyly~dgd~y~~fMD~~get~eqi 114 (159)
T PLN03107 80 CDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDL 114 (159)
T ss_pred EEEEEEEEEEEEEEEEcCCceEEEEcCCCCcceeE
Confidence 999999999999999999998899999 699998
>TIGR00037 eIF_5A translation initiation factor eIF-5A
Back Show alignment and domain information
Probab=100.00 E-value=1.6e-39 Score=234.37 Aligned_cols=97 Identities=44% Similarity=0.671 Sum_probs=93.8
Q ss_pred cceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEe
Q 033503 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (118)
Q Consensus 16 ~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly 95 (118)
++.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|++++++|.|+++++||||
T Consensus 1 ~~~~~~~~~~~irkG~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY 80 (130)
T TIGR00037 1 MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLA 80 (130)
T ss_pred CCcceeccHHHccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeEeecCCChHHH
Q 033503 96 ISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 96 ~d~d~~l~FMd~etyeq~ 113 (118)
+||+.| +|||+|||||+
T Consensus 81 ~dg~~~-~fMd~etyeq~ 97 (130)
T TIGR00037 81 IMGGMV-QLMDLDTYETD 97 (130)
T ss_pred ecCCEE-EEEcCCCcEEE
Confidence 988766 99999999997
Observed in eukaryotes and archaea.
>PTZ00328 eukaryotic initiation factor 5a; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=6.2e-37 Score=228.17 Aligned_cols=111 Identities=48% Similarity=0.813 Sum_probs=107.1
Q ss_pred CCcccccccc-ccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCC
Q 033503 1 MSDEEHHFES-KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH 79 (118)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~ 79 (118)
|||++|+|+. +++|+++.|+|++++.||+|.+|+|+|+||+|++++++||||||+||+++.+.+||||+++|...|+++
T Consensus 1 m~d~~~~f~~~~~~~gas~t~p~q~~~LkkG~yvvIkGrPCKIveistSKtGKHGhAK~~ivaidIFTgkK~edi~Ps~h 80 (166)
T PTZ00328 1 MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTH 80 (166)
T ss_pred CCccccccccccCCCCCCceecccccceeECCEEEECCeeeEEEEEecCCCCcCCceEEEEEEEecCCCCEEeeecCccc
Confidence 8998889995 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecEEEeeeeEEEeccCC------CeeEeecCCChH
Q 033503 80 NCDVPHVTRTDYQLIDISED------GFVCSYFVLSCS 111 (118)
Q Consensus 80 ~ve~~~ve~~~~qyly~d~d------~~l~FMd~etye 111 (118)
++++|+|+|++||+|.+++| +|+.+||.++|+
T Consensus 81 nv~VP~V~r~~yqli~I~~d~~~~~~g~v~LMd~~g~~ 118 (166)
T PTZ00328 81 NVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGES 118 (166)
T ss_pred eeEeeeEEeeEEEEEEEcCCCcccccceEEEEcCCCCe
Confidence 99999999999999999887 799999998875
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=100.00 E-value=5e-36 Score=216.49 Aligned_cols=92 Identities=33% Similarity=0.405 Sum_probs=88.6
Q ss_pred eEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCC
Q 033503 20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED 99 (118)
Q Consensus 20 ~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d 99 (118)
.++++++||+|++|+++|+||+|++++++|||| |+|++|+++|||+||+++|.+|+++++++.|.|+++++||||+||+
T Consensus 2 ~~i~~~~lr~G~~i~~dg~~~~V~~~~~~KpGK-g~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~ 80 (131)
T COG0231 2 AMISASELRKGLYIVIDGEPYVVVEISHVKPGK-GGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGD 80 (131)
T ss_pred ceeeHHHccCCCEEEECCeEEEEEEEEEccCCC-CCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCC
Confidence 578999999999999999999999999999999 5569999999999999999999999999999999999999999998
Q ss_pred CeeEeecCCChHHH
Q 033503 100 GFVCSYFVLSCSFY 113 (118)
Q Consensus 100 ~~l~FMd~etyeq~ 113 (118)
.| +|||+||||||
T Consensus 81 ~~-~FMD~etyeq~ 93 (131)
T COG0231 81 FY-VFMDLETYEQY 93 (131)
T ss_pred eE-EEccCCCceEE
Confidence 87 99999999997
>PRK03999 translation initiation factor IF-5A; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=5.9e-36 Score=215.50 Aligned_cols=94 Identities=33% Similarity=0.580 Sum_probs=90.7
Q ss_pred eeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccC
Q 033503 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE 98 (118)
Q Consensus 19 t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~ 98 (118)
-.|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.|+++++||||+||
T Consensus 3 ~~~~~~~~lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~~ve~~~~qylY~dg 82 (129)
T PRK03999 3 KKQVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIMG 82 (129)
T ss_pred cccccHHHccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeeeeEEeEEEEEEEecC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEeecCCChHHH
Q 033503 99 DGFVCSYFVLSCSFY 113 (118)
Q Consensus 99 d~~l~FMd~etyeq~ 113 (118)
+.| +|||+|||||+
T Consensus 83 ~~~-~fMd~eTyeq~ 96 (129)
T PRK03999 83 DVV-QLMDLETYETF 96 (129)
T ss_pred CEE-EEecCCCceEE
Confidence 665 99999999997
>PRK12426 elongation factor P; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-34 Score=219.99 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=88.5
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCC
Q 033503 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~ 100 (118)
++++++||+|++|+++|+||.|++++|+|||| |+|++|+|+|||.||+++|+||+++++++.+.|+++++||||.||+.
T Consensus 1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGk-g~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~ 79 (185)
T PRK12426 1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPK-GETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDE 79 (185)
T ss_pred CCchhhcCCCCEEEECCEEEEEEEEEEecCCC-CceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCe
Confidence 36799999999999999999999999999999 99999999999999999999999999999999999999999999988
Q ss_pred eeEeecCCChHHH
Q 033503 101 FVCSYFVLSCSFY 113 (118)
Q Consensus 101 ~l~FMd~etyeq~ 113 (118)
| +|||+||||||
T Consensus 80 ~-~FMd~etyeQi 91 (185)
T PRK12426 80 Y-LFLDLGNYDKI 91 (185)
T ss_pred E-EEecCCCceEE
Confidence 7 99999999998
>PRK14578 elongation factor P; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=2.6e-33 Score=212.75 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=87.6
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCC-cccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCC
Q 033503 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKH-GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED 99 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKh-G~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d 99 (118)
++++++||+|++|+++|+||+|++++|+||||+ |+|++|+|+|||.||+++|+||++++++|.|.|+++++||||.||+
T Consensus 1 m~~~~dik~G~~i~~dg~~~~V~~~~~~kpg~~g~~a~vr~klknl~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~ 80 (187)
T PRK14578 1 MYTTSDFKKGLVIQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYADGD 80 (187)
T ss_pred CCchhhcCCCCEEEECCEEEEEEEEEEEcCCCCCCceEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCC
Confidence 367999999999999999999999999999985 4679999999999999999999999999999999999999999998
Q ss_pred CeeEeecCCChHHH
Q 033503 100 GFVCSYFVLSCSFY 113 (118)
Q Consensus 100 ~~l~FMd~etyeq~ 113 (118)
.| +|||+||||||
T Consensus 81 ~~-~FMD~etyEQ~ 93 (187)
T PRK14578 81 RG-VFMDLETYEQF 93 (187)
T ss_pred EE-EEecCCCcEEE
Confidence 87 99999999998
>PRK04542 elongation factor P; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=2.7e-33 Score=212.89 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=87.7
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecC-CCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCC
Q 033503 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKT-GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED 99 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kp-GKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d 99 (118)
++++++||+|++|+++|+||+|++++|+|| ||+|+|++|+|+|||.||+++++||+|++++|.+.|++++|||||.||+
T Consensus 1 mi~~~dik~G~~i~~~g~~~~V~~~~h~kp~Gkg~~a~vr~klknl~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~ 80 (189)
T PRK04542 1 MPKANEIKKGMVVEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGD 80 (189)
T ss_pred CCchhhcCCCCEEEECCEEEEEEEEEEECCCCCCcceEEEEEEEEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCC
Confidence 468999999999999999999999999999 7944669999999999999999999999999999999999999999998
Q ss_pred CeeEeecCCChHHH
Q 033503 100 GFVCSYFVLSCSFY 113 (118)
Q Consensus 100 ~~l~FMd~etyeq~ 113 (118)
.| +|||++|||||
T Consensus 81 ~~-~FMd~etyEQ~ 93 (189)
T PRK04542 81 EY-VFMDNEDYTPY 93 (189)
T ss_pred EE-EEecCCCceEE
Confidence 87 99999999998
>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.98 E-value=1e-32 Score=201.10 Aligned_cols=108 Identities=67% Similarity=1.022 Sum_probs=104.9
Q ss_pred CCccccccccccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCc
Q 033503 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (118)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ 80 (118)
|||++|+|+ .++||++.|||++++.|||+.+|.++|+||+|+|.+++|+||||+|++++..++||||+++|..++|.++
T Consensus 1 Msd~~~~Fe-~~dagas~t~p~q~salrkNG~vviK~rpckivEmSTsKtGKHGhAKvh~vaidifTgkk~edI~psthn 79 (156)
T KOG3271|consen 1 MSDEEHRFE-TGDAGASATYPMQCSALRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKVHIVAIDIFTGKKLEDICPSTHN 79 (156)
T ss_pred CCccccccc-cCCCcccccccchhhheeeCCEEEEcCCCceEEEeecccCCcCCceEEEEEEEEeecCcccccccCCCCc
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecEEEeeeeEEEeccCCCeeEeecCCCh
Q 033503 81 CDVPHVTRTDYQLIDISEDGFVCSYFVLSC 110 (118)
Q Consensus 81 ve~~~ve~~~~qyly~d~d~~l~FMd~ety 110 (118)
+++|+++|++||++.++++ |+.||+.+.+
T Consensus 80 ~dVp~vkr~~yqLidIsd~-~~sl~t~sG~ 108 (156)
T KOG3271|consen 80 MDVPVVKRVDYQLIDISDG-YLSLMTDSGE 108 (156)
T ss_pred cccCccccceeEEEEecCC-eEEEEcCCCC
Confidence 9999999999999999774 9999998763
>TIGR02178 yeiP elongation factor P-like protein YeiP
Back Show alignment and domain information
Probab=99.98 E-value=4.6e-32 Score=205.75 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=85.0
Q ss_pred cccccCceEEEECCeeEEEEEeeEecCCCCccc-EEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCCee
Q 033503 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHA-KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFV 102 (118)
Q Consensus 24 ~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A-~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~~l 102 (118)
+++||+|++|+++|+||+|++++|+|||+.|+| ++|+|+|||.||+++++||+|+|++|.|.|+++++||||.||+.|
T Consensus 2 ~~~lk~G~~i~~dg~~~~V~~~~~~kpg~~ga~~~vk~klknl~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~~~- 80 (186)
T TIGR02178 2 ASEMKKGSIVEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFSYKDGEEY- 80 (186)
T ss_pred cccccCCCEEEECCEEEEEEEEEEECCCCCCCcEEEEEEEeEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCCeE-
Confidence 789999999999999999999999999884555 899999999999999999999999999999999999999999887
Q ss_pred EeecCCChHHH
Q 033503 103 CSYFVLSCSFY 113 (118)
Q Consensus 103 ~FMd~etyeq~ 113 (118)
+|||+||||||
T Consensus 81 ~FMD~etyEQ~ 91 (186)
T TIGR02178 81 VFMDEEDYTPY 91 (186)
T ss_pred EEccCCCcEEE
Confidence 99999999998
This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
>PRK00529 elongation factor P; Validated
Back Show alignment and domain information
Probab=99.97 E-value=1.1e-31 Score=203.17 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=88.2
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCC
Q 033503 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~ 100 (118)
++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||++++.+|+++++++.|.++++++||||.|++.
T Consensus 1 ~~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~vrvk~knL~tG~~~e~~f~~~e~ve~~~ve~~~~q~ly~dgd~ 79 (186)
T PRK00529 1 MISANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYNDGDG 79 (186)
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCeEEEEeCCCCEEEeccEEeEEEEEEEECCCE
Confidence 36899999999999999999999999999999 99999999999999999999999999999999999999999999987
Q ss_pred eeEeecCCChHHH
Q 033503 101 FVCSYFVLSCSFY 113 (118)
Q Consensus 101 ~l~FMd~etyeq~ 113 (118)
+ +|||+||||||
T Consensus 80 ~-~fMD~etyeq~ 91 (186)
T PRK00529 80 Y-VFMDTETYEQI 91 (186)
T ss_pred E-EEecCCCceee
Confidence 6 99999999997
>TIGR00038 efp translation elongation factor P
Back Show alignment and domain information
Probab=99.97 E-value=1.9e-31 Score=201.59 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=87.4
Q ss_pred EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeeeEEEeccCCCe
Q 033503 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF 101 (118)
Q Consensus 22 i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~qyly~d~d~~ 101 (118)
+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||++++++|+++++++.|.++++++||||.|++.+
T Consensus 1 ~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~~rvk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly~dgd~~ 79 (184)
T TIGR00038 1 ISANDLRKGLVIELDGEPYVVLEFEHVKPGK-GQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKDGDSY 79 (184)
T ss_pred CchhhccCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEEECCCEE
Confidence 4689999999999999999999999999999 999999999999999999999999999999999999999999999876
Q ss_pred eEeecCCChHHH
Q 033503 102 VCSYFVLSCSFY 113 (118)
Q Consensus 102 l~FMd~etyeq~ 113 (118)
+|||+||||||
T Consensus 80 -~fMD~etyeq~ 90 (184)
T TIGR00038 80 -VFMDTETYEQI 90 (184)
T ss_pred -EEeCCCCccce
Confidence 99999999997
function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors
Back Show alignment and domain information
Probab=99.88 E-value=3.5e-22 Score=126.00 Aligned_cols=58 Identities=29% Similarity=0.379 Sum_probs=53.5
Q ss_pred ecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCce
Q 033503 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC 81 (118)
Q Consensus 23 ~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~v 81 (118)
+|++||+|++|+++|+||+|++++|++||| |+|++|+++|||.||+++|.+|+++|++
T Consensus 1 sa~dlr~G~~i~~~g~~~~V~~~~~~k~gk-g~a~v~~klknl~tG~~~e~tf~s~d~v 58 (58)
T PF08207_consen 1 SASDLRKGMVIEIDGEPYVVLDFQHVKPGK-GGAFVRVKLKNLRTGSKVEKTFRSGDKV 58 (58)
T ss_dssp EGGG--TTSEEEETTEEEEEEEEEEECCTT-SSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred CHHHccCCCEEEECCEEEEEEEEEEECCCC-CCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence 589999999999999999999999999999 9999999999999999999999999986
; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []
Back Show alignment and domain information
Probab=98.88 E-value=7.8e-10 Score=68.85 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=21.8
Q ss_pred eeeeEEEeccCCCeeEeecCCChHHHh
Q 033503 88 RTDYQLIDISEDGFVCSYFVLSCSFYL 114 (118)
Q Consensus 88 ~~~~qyly~d~d~~l~FMd~etyeq~~ 114 (118)
+|++||||.||+++ +|||++|||||.
T Consensus 1 ~r~~qylY~dgd~~-~FMd~etyeQi~ 26 (55)
T PF01132_consen 1 RREMQYLYKDGDNY-VFMDTETYEQIE 26 (55)
T ss_dssp EEEEEEEEEESSEE-EEEETTT--EEE
T ss_pred CceEEEEEeCCCEE-EEecCCCceEEE
Confidence 68999999999886 999999999973
Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1
Back Show alignment and domain information
Probab=98.86 E-value=7.8e-10 Score=70.23 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=24.0
Q ss_pred EeeeeEEEeccCCCeeEeecCCChHHH
Q 033503 87 TRTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 87 e~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
+++++||||.||+.| +|||++|||||
T Consensus 1 e~~~~qylY~dg~~~-~FMd~etyeQ~ 26 (61)
T cd04470 1 EEREMQYLYKDGDNY-VFMDTETYEQI 26 (61)
T ss_pred CCceEEEEEeCCCEE-EEeCCCCceEE
Confidence 478999999999887 89999999997
EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain
Back Show alignment and domain information
Probab=98.58 E-value=1.9e-08 Score=61.92 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.8
Q ss_pred eeeEEEeccCCCeeEeecCCChHHH
Q 033503 89 TDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 89 ~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
|++||||.||+.+ +|||+|||||+
T Consensus 1 ~~~qylY~dg~~~-~fMd~etyeq~ 24 (55)
T cd04463 1 RELQVLDIQGSKP-VTMDLETYEVV 24 (55)
T ss_pred CCEEEEEcCCCEe-EEecCCCceEE
Confidence 5799999999776 99999999997
The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []
Back Show alignment and domain information
Probab=97.23 E-value=0.00038 Score=45.32 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=23.3
Q ss_pred EEEeeeeEEEeccCCCeeEeecCCChHH
Q 033503 85 HVTRTDYQLIDISEDGFVCSYFVLSCSF 112 (118)
Q Consensus 85 ~ve~~~~qyly~d~d~~l~FMd~etyeq 112 (118)
+|+|++||.+.+++|+|+.+|| ++||.
T Consensus 1 ~V~r~eyqli~I~~Dg~lsLMd-e~get 27 (69)
T PF01287_consen 1 IVKRKEYQLIDIDGDGFLSLMD-EDGET 27 (69)
T ss_dssp -EEEEEEEEEEEETTTEEEEEE-TTS-E
T ss_pred CeEEEEEEEEEEccCcEEEEEc-CCCCe
Confidence 4799999999999999999999 88875
Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=96.75 E-value=0.0071 Score=50.36 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=66.7
Q ss_pred ccCCCcceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCcee--ecEEE-
Q 033503 11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD--VPHVT- 87 (118)
Q Consensus 11 ~~~~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve--~~~ve- 87 (118)
+|-.-.-.|+-+..-++++|++|.++|..+.++.. -|+ .+.++++.|++..+.++.....-+ .+.-+
T Consensus 231 tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~----~~~------~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T COG1499 231 TGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRS----IGK------GIVVLDLETGEPVEITWSVYKRNEGKVAVKEP 300 (355)
T ss_pred CCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEE----ecC------ceEEEecccCCccccChhhcccCcceeeeccc
Confidence 34444567899999999999999999966665533 256 388999999988887775433333 22222
Q ss_pred -eeeeEEEeccCCCeeEeecCCChHHH
Q 033503 88 -RTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 88 -~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
-+.+.++..+.+.. .+||++|||-+
T Consensus 301 ~~~~~~vvs~~~~~~-~v~d~et~e~~ 326 (355)
T COG1499 301 RLKKAVVVSRDPSAI-QVLDPETYEAR 326 (355)
T ss_pred cceEEEEEecCCCce-EEEecceEEEE
Confidence 25788888888766 89999999854
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain
Back Show alignment and domain information
Probab=96.02 E-value=0.0048 Score=38.91 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.5
Q ss_pred EEeeeeEEEeccCCCeeEeecCCChHHH
Q 033503 86 VTRTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 86 ve~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
|+||..|.++.+|+.. -+||+||||-+
T Consensus 1 i~k~~aqVisi~g~~v-QlMD~eTYeT~ 27 (57)
T cd04467 1 IERKTGQVLSIMGDVV-QLMDLETYETF 27 (57)
T ss_pred CcceEEEEEEEcCCEE-EEeccccceeE
Confidence 5899999999999765 89999999843
aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain
Back Show alignment and domain information
Probab=93.65 E-value=0.064 Score=34.97 Aligned_cols=22 Identities=50% Similarity=0.691 Sum_probs=19.0
Q ss_pred EEeeeeEEEeccCCCeeEeecCC
Q 033503 86 VTRTDYQLIDISEDGFVCSYFVL 108 (118)
Q Consensus 86 ve~~~~qyly~d~d~~l~FMd~e 108 (118)
|.|++||++.+++ +|+.+|+.+
T Consensus 1 V~R~eYqLidI~d-GflsLm~e~ 22 (69)
T cd04468 1 VKRTEYQLIDIDD-GFLSLMDDD 22 (69)
T ss_pred CcceeEEEEeecC-CeEEEEcCC
Confidence 4689999999977 999999853
eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain
Back Show alignment and domain information
Probab=86.10 E-value=0.91 Score=30.03 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.8
Q ss_pred eeeeEEEeccCCCeeEeecCC
Q 033503 88 RTDYQLIDISEDGFVCSYFVL 108 (118)
Q Consensus 88 ~~~~qyly~d~d~~l~FMd~e 108 (118)
.++||++.+ +|+|+.+||.+
T Consensus 2 ~~eYqLidI-~DG~lsLM~e~ 21 (75)
T cd04469 2 FKQYRVLDI-QDGSIVAMTET 21 (75)
T ss_pred ceEEEEEEe-cCCeEEEEcCC
Confidence 368999999 67999999853
Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 118
d1x6oa1 68
b.34.5.2 (A:19-86) Eukaryotic initiation translati
4e-36 d1khia1 76
b.34.5.2 (A:27-102) Woronin body major protein (He
1e-28 d2eifa1 73
b.34.5.2 (A:1-73) Eukaryotic initiation translatio
4e-25 d1iz6a1 69
b.34.5.2 (A:2-70) Eukaryotic initiation translatio
1e-23 d1bkba1 71
b.34.5.2 (A:4-74) Eukaryotic initiation translatio
6e-23 d1ueba1 63
b.34.5.2 (A:1-63) Elongation factor P N-terminal d
9e-04 d1x6oa2 79
b.40.4.5 (A:87-165) C-terminal domain of eukaryoti
0.004
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 68
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class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]
Score = 115 bits (291), Expect = 4e-36
Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77
KT+P AG ++K GY+ I GRPCKV+++S SKTGKHGHAK V DIF G +LED PS
Sbjct: 1 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPS 60
Query: 78 SHNCDVP 84
+HN +VP
Sbjct: 61 THNVEVP 67
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 76
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]
Score = 96.8 bits (241), Expect = 1e-28
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 14 AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLE 72
AS+T IR ++++GRPC+V+ +STS TG+H + +G+D+F + E
Sbjct: 1 GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQLHE 55
Query: 73 DIVPSSHNCDVPHVTR 88
+ S+ V
Sbjct: 56 ESSFVSNPAPSVVVQT 71
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.3 bits (219), Expect = 4e-25
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
T G+++ Y++I G PC++V++S SK GKHG AK VGI IF K E + P+S
Sbjct: 7 TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 66
Query: 79 HNCDVP 84
+VP
Sbjct: 67 SKVEVP 72
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 84.4 bits (209), Expect = 1e-23
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
Q ++ YI+I PC++V ++ S GKHG AK + IF+GK + P+S D
Sbjct: 7 QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 66
Query: 83 VP 84
VP
Sbjct: 67 VP 68
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71
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class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 82.6 bits (204), Expect = 6e-23
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
T +AG +++ Y+VI G PC+VVE+ SKTGKHG AK V + +F+G K +P
Sbjct: 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65
Query: 79 HNCDVP 84
+VP
Sbjct: 66 AQVEVP 71
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]
Score = 33.0 bits (76), Expect = 9e-04
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
+R + + G + VE K G+ G AK ++ G +E S +
Sbjct: 3 SVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLE 61
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 79
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class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]
Score = 31.6 bits (72), Expect = 0.004
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 86 VTRTDYQLIDISEDGFVCSYFVLS 109
V Y ++DI + LS
Sbjct: 1 VKTYTYSVLDIQANEDPSLPAHLS 24
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 118
d2eifa1 73
Eukaryotic initiation translation factor 5a (eIF5a
99.94 d1bkba1 71
Eukaryotic initiation translation factor 5a (eIF5a
99.94 d1iz6a1 69
Eukaryotic initiation translation factor 5a (eIF5a
99.94 d1x6oa1 68
Eukaryotic initiation translation factor 5a (eIF5a
99.93 d1ueba1 63
Elongation factor P N-terminal domain {Thermus the
99.9 d1khia1 76
Woronin body major protein (Hex1) {Filamentous fun
99.81 d1ueba2 63
Elongation factor P middle and C-terminal domains
99.03 d2eifa2 59
C-terminal domain of eukaryotic initiation transla
95.55 d1bkba2 65
C-terminal domain of eukaryotic initiation transla
95.5 d1iz6a2 67
C-terminal domain of eukaryotic initiation transla
95.13 d1x6oa2 79
C-terminal domain of eukaryotic initiation transla
90.24 d1khia2 71
C-terminal domain of eIF5a homologue (Hex1) {Filam
88.25
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
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class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=2.1e-27 Score=153.83 Aligned_cols=69 Identities=41% Similarity=0.718 Sum_probs=66.7
Q ss_pred ceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecE
Q 033503 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH 85 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ 85 (118)
..|.++++++||+|++|+++|+||+|++++++||||||+|++|++++||+||+++|.+|+++|++|+|.
T Consensus 5 ~~~~~i~~~~lKkG~~i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevPi 73 (73)
T d2eifa1 5 PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPI 73 (73)
T ss_dssp SSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEEC
T ss_pred ccceEEEHHHccCCCEEEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEeccC
Confidence 458999999999999999999999999999999999999999999999999999999999999999984
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.94 E-value=3.2e-27 Score=152.28 Aligned_cols=68 Identities=41% Similarity=0.751 Sum_probs=66.0
Q ss_pred ceeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033503 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 17 ~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
+.|.+|++++||+|++|+++|+||+|++++++||||||+|++|+++|||+||+++|.+|+++|++|+|
T Consensus 4 m~~~~i~a~~lKkG~~i~~~g~p~~V~~~~~~kpgk~G~a~~r~k~k~i~tG~~~e~~~~s~d~vevP 71 (71)
T d1bkba1 4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP 71 (71)
T ss_dssp CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred ceeeEEEHHHccCCCEEEECCEEEEEEEEEEECCCCCCccEEEEEEEEeecCcEEEEEEcCCCEEeCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999987
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.94 E-value=1.3e-26 Score=148.53 Aligned_cols=67 Identities=34% Similarity=0.662 Sum_probs=64.9
Q ss_pred eeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecE
Q 033503 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH 85 (118)
Q Consensus 19 t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ 85 (118)
...|++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++|+||+|.
T Consensus 3 ~~~i~~~~lkkG~~i~~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~d~vevP~ 69 (69)
T d1iz6a1 3 KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPI 69 (69)
T ss_dssp EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred cEEEEHhHccCCCEEEECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCCCEEeccC
Confidence 4689999999999999999999999999999999999999999999999999999999999999984
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]
Probab=99.93 E-value=1.2e-25 Score=143.86 Aligned_cols=68 Identities=59% Similarity=1.087 Sum_probs=62.3
Q ss_pred eeeEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecE
Q 033503 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH 85 (118)
Q Consensus 18 ~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ 85 (118)
.|+|+++++||+|.+|+++|+||+|++++++||||||+|++|+.+.+||||++++...++++++++|.
T Consensus 1 ~T~p~~~~~lkkG~yv~i~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~vP~ 68 (68)
T d1x6oa1 1 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPF 68 (68)
T ss_dssp CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred CceeeEcceeeECCEEEECCEeeEEEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceeecCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999984
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}
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class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]
Probab=99.90 E-value=4e-24 Score=134.63 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=60.8
Q ss_pred EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEEecCCCceeec
Q 033503 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (118)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~P~~Vve~~~~kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~ 84 (118)
++++++||+|++|+++|+||.|++++|++||| |+|++|+|+|||.||+++|.||+++|++|.+
T Consensus 1 Mi~a~elkkG~~i~~~g~~~~V~~~~~~kpgk-g~a~v~~Klknl~tG~~~e~tf~~~dkve~V 63 (63)
T d1ueba1 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDI 63 (63)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred CCcHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEEcCCCCEEEEEECCCCEeeeC
Confidence 47899999999999999999999999999999 9999999999999999999999999999864
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Back Show information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]
Probab=99.81 E-value=6.7e-20 Score=118.55 Aligned_cols=73 Identities=30% Similarity=0.491 Sum_probs=68.3
Q ss_pred CCcceeeEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEEecCCCceeecEEEeeee
Q 033503 14 AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDY 91 (118)
Q Consensus 14 ~~~~~t~~i~~~~lkkG~~i~i~g~P~~Vve~~~~-kpGKhG~A~vrik~knl~TG~~~e~t~~s~~~ve~~~ve~~~~ 91 (118)
|+++.|+|+++++||+|.+|+|+|+||+|++++++ ||||| ++.+.|||||+++|...+.++....|.+++.-.
T Consensus 1 a~as~T~p~~~~~lkkg~yv~i~g~PCkIv~istS~ktGKH-----~~vgidIFtgkk~ed~~~vs~~~p~~vvq~~~g 74 (76)
T d1khia1 1 GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLG 74 (76)
T ss_dssp CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEE
T ss_pred CCCCcceeEEccceeeCCEEEECCcccEEEEEeeccCCCce-----eEEEEeeccCcEeeecccccCCCCceeeeeeec
Confidence 68999999999999999999999999999999998 99998 789999999999999999999999998887643
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
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class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]
Probab=99.03 E-value=3e-11 Score=75.04 Aligned_cols=29 Identities=7% Similarity=0.007 Sum_probs=26.6
Q ss_pred EEEeeeeEEEeccCCCeeEeecCCChHHHh
Q 033503 85 HVTRTDYQLIDISEDGFVCSYFVLSCSFYL 114 (118)
Q Consensus 85 ~ve~~~~qyly~d~d~~l~FMd~etyeq~~ 114 (118)
.|++|++||||.||++| +|||.+|||||.
T Consensus 1 ~ve~~~~qyLY~dgd~~-~FMd~etyEQi~ 29 (63)
T d1ueba2 1 YVETRELQYLYPEGEEM-VFMDLETYEQFA 29 (63)
T ss_dssp CEEEEEEEEEEEETTEE-EEEETTTCCEEE
T ss_pred CccceeEEEEEeCCCeE-EEEeCCCccEEE
Confidence 47999999999999987 999999999974
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Back Show information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.55 E-value=0.0041 Score=37.13 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=24.4
Q ss_pred EEeeeeEEEeccCCCeeEeecCCChHHH
Q 033503 86 VTRTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 86 ve~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
|+|+..|.+.+.||.. .+||.||||.+
T Consensus 1 IeKk~aQVlsi~G~~v-q~MD~etyetf 27 (59)
T d2eifa2 1 IDRRKGQVLAIMGDMV-QIMDLQTYETL 27 (59)
T ss_dssp EEEEEEEEEEEETTEE-EEEETTTCCEE
T ss_pred CccceeEEEEEcCCeE-EEeeCCcceeE
Confidence 6899999999999886 99999999864
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Back Show information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.50 E-value=0.0022 Score=39.07 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=24.5
Q ss_pred EEeeeeEEEeccCCCeeEeecCCChHHH
Q 033503 86 VTRTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 86 ve~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
|+|+..|.|.+.||.. .+||.||||.+
T Consensus 2 IeK~~aQVlsi~Gd~v-q~MD~etyetf 28 (65)
T d1bkba2 2 IEKFTAQILSVSGDVI-QLMDMRDYKTI 28 (65)
T ss_dssp CEEEEEEEEEECSSEE-EEEETTTCCEE
T ss_pred ccccceeEEEEcCCeE-EEeecCcceeE
Confidence 7899999999999876 99999999864
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.13 E-value=0.0058 Score=37.30 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=24.2
Q ss_pred EEeeeeEEEeccCCCeeEeecCCChHHH
Q 033503 86 VTRTDYQLIDISEDGFVCSYFVLSCSFY 113 (118)
Q Consensus 86 ve~~~~qyly~d~d~~l~FMd~etyeq~ 113 (118)
|+|+..|.|.+.||.. .+||.||||.+
T Consensus 1 IeKk~aQVlsi~Gd~v-Q~MD~etyeTf 27 (67)
T d1iz6a2 1 IDKKTAQVIAITPDTV-QIMDMETYETF 27 (67)
T ss_dssp CEEEEEEEEEECSSEE-EEECTTTCCEE
T ss_pred CccceeEEEEEcCCeE-EEeecCCceeE
Confidence 5899999999999876 99999999864
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Back Show information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]
Probab=90.24 E-value=0.12 Score=32.12 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.3
Q ss_pred EEeeeeEEEeccCC------CeeEeecCC
Q 033503 86 VTRTDYQLIDISED------GFVCSYFVL 108 (118)
Q Consensus 86 ve~~~~qyly~d~d------~~l~FMd~e 108 (118)
|.|.+||++.+++| +|+.+|+.+
T Consensus 1 Vkr~eYqlidI~~d~d~s~dGflsLm~d~ 29 (79)
T d1x6oa2 1 VKTYTYSVLDIQANEDPSLPAHLSLMDDE 29 (79)
T ss_dssp CEEEEEEEEEEECCSSTTSCCEEEEECTT
T ss_pred CccceeEEEeeccCCccCCCcEEEEEcCC
Confidence 46889999999765 899999954
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Back Show information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eIF5a homologue (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]
Probab=88.25 E-value=0.16 Score=30.88 Aligned_cols=19 Identities=21% Similarity=0.517 Sum_probs=16.4
Q ss_pred eeeEEEeccCCCeeEeecCC
Q 033503 89 TDYQLIDISEDGFVCSYFVL 108 (118)
Q Consensus 89 ~~~qyly~d~d~~l~FMd~e 108 (118)
++||++.++ |+|+.+||..
T Consensus 2 keYqlidId-DG~lsLM~e~ 20 (71)
T d1khia2 2 KQYRVLDMQ-DGSIVAMTET 20 (71)
T ss_dssp EEEEEEEEE-TTEEEEECTT
T ss_pred ceEEEEEee-CCeEEEEcCC
Confidence 799999995 6999999953
