BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033504
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-SKFSY 107
E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A +F+Y
Sbjct: 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAY 49
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-SKFSY 107
E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A +F+Y
Sbjct: 26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAY 69
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG 100
+++ +E ++ PV+L+MKG PEFP+CGFS + +LG
Sbjct: 4 EIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLG 42
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL 99
+LK +++ V + V+L+MKG +FPQCGFS V++L
Sbjct: 6 ALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQIL 43
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL 99
LK+ +E+ V V+L+MKG +FP CGFS+ V++L
Sbjct: 6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQIL 43
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYSKFSY 107
VK++ V++++KG PE PQCGFS+ V++L + Y
Sbjct: 17 VKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDY 53
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112
P ML+MKG P+ P+CGFS V +L ++ +FS F FS
Sbjct: 17 PCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS 55
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 76 VMLYMKGVPEFPQCGFSSLAVRVL 99
VML+MKG + +CGFS + +L
Sbjct: 17 VMLFMKGNKQEAKCGFSKQILEIL 40
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 76 VMLYMKGVPEFPQCGFSSLAVRVLGA 101
VML+MKG + +CGFS + +L +
Sbjct: 19 VMLFMKGNKQEAKCGFSKQILEILNS 44
>pdb|2P0S|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Abc Transporter Domain From Porphyromonas Gingivalis W83
pdb|2P0S|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Abc Transporter Domain From Porphyromonas Gingivalis W83
Length = 143
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 46 THEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYSKF 105
T E++R D SG+ + QD+ E+P + + G + P S+ R+L Y
Sbjct: 39 TAEEYRKXG-ADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLP-ASVSNHISRILSDYLSD 96
Query: 106 SYFCSFSI 113
S++I
Sbjct: 97 KKIASYNI 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,415,112
Number of Sequences: 62578
Number of extensions: 130936
Number of successful extensions: 237
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 12
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)