Query 033504
Match_columns 118
No_of_seqs 169 out of 1256
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0278 Glutaredoxin-related p 100.0 6E-31 1.3E-35 182.5 -0.1 85 6-102 17-104 (105)
2 KOG0911 Glutaredoxin-related p 99.9 3.5E-26 7.5E-31 177.4 -0.0 85 5-101 140-226 (227)
3 COG0278 Glutaredoxin-related p 99.8 1.5E-20 3.3E-25 130.6 5.6 51 62-112 3-55 (105)
4 KOG0911 Glutaredoxin-related p 99.7 3.3E-17 7.1E-22 127.5 5.0 50 63-112 128-178 (227)
5 PRK10824 glutaredoxin-4; Provi 99.7 1.5E-18 3.2E-23 123.0 -2.7 90 5-106 16-108 (115)
6 PTZ00062 glutaredoxin; Provisi 99.5 2.3E-16 4.9E-21 121.3 -3.0 56 5-60 114-170 (204)
7 PRK10824 glutaredoxin-4; Provi 99.5 1.3E-13 2.8E-18 97.7 5.9 51 62-112 3-54 (115)
8 PTZ00062 glutaredoxin; Provisi 99.4 1.8E-12 4E-17 99.6 8.4 51 62-112 101-152 (204)
9 TIGR00365 monothiol glutaredox 99.2 3.7E-12 7.9E-17 87.0 2.7 56 5-60 13-69 (97)
10 TIGR00365 monothiol glutaredox 99.2 4.9E-11 1.1E-15 81.4 5.3 48 65-112 3-51 (97)
11 cd03028 GRX_PICOT_like Glutare 99.1 2.1E-11 4.4E-16 81.8 2.6 57 4-60 8-65 (90)
12 cd03028 GRX_PICOT_like Glutare 99.1 1.3E-10 2.9E-15 77.8 4.1 46 67-112 1-47 (90)
13 TIGR02189 GlrX-like_plant Glut 98.3 4.1E-08 8.9E-13 67.2 -2.8 52 4-60 8-63 (99)
14 TIGR02189 GlrX-like_plant Glut 97.7 4.1E-05 8.9E-10 52.3 3.5 40 68-112 2-42 (99)
15 PF00462 Glutaredoxin: Glutare 97.7 7.4E-06 1.6E-10 50.3 -0.6 44 17-60 7-51 (60)
16 cd03027 GRX_DEP Glutaredoxin ( 97.7 2.8E-05 6.1E-10 49.4 2.1 44 17-60 9-53 (73)
17 PHA03050 glutaredoxin; Provisi 97.5 6.5E-06 1.4E-10 57.4 -3.2 50 6-60 15-71 (108)
18 cd02066 GRX_family Glutaredoxi 97.4 7.4E-05 1.6E-09 45.4 1.7 44 17-60 8-52 (72)
19 TIGR02181 GRX_bact Glutaredoxi 97.4 7.2E-05 1.6E-09 47.9 1.2 45 16-60 6-51 (79)
20 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.00011 2.4E-09 46.2 1.8 44 17-60 8-53 (75)
21 PRK10638 glutaredoxin 3; Provi 97.2 0.00015 3.3E-09 47.2 1.5 45 16-60 9-54 (83)
22 TIGR02190 GlrX-dom Glutaredoxi 97.0 0.00044 9.6E-09 44.8 2.1 50 5-60 9-59 (79)
23 cd03029 GRX_hybridPRX5 Glutare 96.9 0.00086 1.9E-08 42.3 2.4 49 6-60 3-52 (72)
24 PHA03050 glutaredoxin; Provisi 96.6 0.0033 7.2E-08 43.7 4.2 43 64-111 3-49 (108)
25 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0013 2.7E-08 41.8 1.6 44 17-60 8-55 (82)
26 TIGR02194 GlrX_NrdH Glutaredox 96.5 0.0013 2.9E-08 41.6 1.3 35 16-50 6-41 (72)
27 cd03036 ArsC_like Arsenate Red 96.4 0.0017 3.7E-08 44.9 1.5 37 16-52 6-43 (111)
28 PRK01655 spxA transcriptional 96.0 0.0034 7.4E-08 44.9 1.5 37 16-52 7-44 (131)
29 PRK10329 glutaredoxin-like pro 95.8 0.0054 1.2E-07 40.3 1.6 33 16-48 8-41 (81)
30 TIGR02190 GlrX-dom Glutaredoxi 95.8 0.014 3.1E-07 37.5 3.6 36 71-111 5-41 (79)
31 cd03032 ArsC_Spx Arsenate Redu 95.8 0.005 1.1E-07 42.7 1.5 38 16-53 7-45 (115)
32 cd02977 ArsC_family Arsenate R 95.7 0.0056 1.2E-07 41.5 1.5 39 16-54 6-45 (105)
33 TIGR01617 arsC_related transcr 95.5 0.0068 1.5E-07 42.1 1.3 36 16-51 6-42 (117)
34 cd03035 ArsC_Yffb Arsenate Red 95.5 0.0073 1.6E-07 41.7 1.4 36 16-51 6-42 (105)
35 cd03031 GRX_GRX_like Glutaredo 95.5 0.0057 1.2E-07 45.0 0.9 49 10-60 9-62 (147)
36 PRK11200 grxA glutaredoxin 1; 95.4 0.0065 1.4E-07 39.5 1.0 39 17-55 9-53 (85)
37 cd03027 GRX_DEP Glutaredoxin ( 95.1 0.03 6.6E-07 35.2 3.4 33 75-112 2-35 (73)
38 TIGR02180 GRX_euk Glutaredoxin 95.1 0.011 2.4E-07 37.4 1.3 45 16-60 6-56 (84)
39 PF00462 Glutaredoxin: Glutare 95.1 0.028 6E-07 34.1 3.0 27 87-113 7-34 (60)
40 PRK12559 transcriptional regul 95.1 0.01 2.2E-07 42.5 1.1 38 16-53 7-45 (131)
41 cd03418 GRX_GRXb_1_3_like Glut 95.0 0.032 6.9E-07 34.7 3.3 32 76-112 2-34 (75)
42 TIGR02196 GlrX_YruB Glutaredox 95.0 0.01 2.2E-07 36.0 1.0 35 16-50 7-42 (74)
43 cd03033 ArsC_15kD Arsenate Red 95.0 0.013 2.7E-07 41.1 1.4 37 16-52 7-44 (113)
44 TIGR01616 nitro_assoc nitrogen 94.8 0.016 3.4E-07 41.5 1.7 36 17-52 9-45 (126)
45 PRK13344 spxA transcriptional 94.8 0.015 3.2E-07 41.8 1.5 37 16-52 7-44 (132)
46 PRK10026 arsenate reductase; P 94.8 0.015 3.2E-07 42.6 1.4 37 16-52 9-46 (141)
47 COG1393 ArsC Arsenate reductas 94.8 0.016 3.5E-07 41.0 1.5 37 16-52 8-45 (117)
48 KOG1752 Glutaredoxin and relat 94.7 0.086 1.9E-06 36.7 5.1 44 64-112 4-48 (104)
49 cd02066 GRX_family Glutaredoxi 94.7 0.048 1E-06 32.6 3.3 33 75-112 1-34 (72)
50 cd03030 GRX_SH3BGR Glutaredoxi 94.6 0.014 2.9E-07 39.7 0.8 56 5-60 1-62 (92)
51 COG0695 GrxC Glutaredoxin and 94.3 0.027 5.8E-07 37.0 1.7 44 17-60 9-55 (80)
52 PRK10853 putative reductase; P 94.0 0.028 6.1E-07 39.6 1.4 36 16-51 7-43 (118)
53 cd03419 GRX_GRXh_1_2_like Glut 94.0 0.078 1.7E-06 33.4 3.3 32 75-111 1-33 (82)
54 cd03029 GRX_hybridPRX5 Glutare 93.9 0.087 1.9E-06 32.9 3.4 33 75-112 2-35 (72)
55 PRK10638 glutaredoxin 3; Provi 93.8 0.1 2.2E-06 33.7 3.7 32 75-111 3-35 (83)
56 cd02976 NrdH NrdH-redoxin (Nrd 93.7 0.039 8.3E-07 33.3 1.4 35 16-50 7-42 (73)
57 cd03034 ArsC_ArsC Arsenate Red 93.6 0.038 8.2E-07 38.3 1.5 36 16-51 6-42 (112)
58 cd03036 ArsC_like Arsenate Red 92.9 0.081 1.7E-06 36.5 2.2 27 86-112 6-33 (111)
59 TIGR02200 GlrX_actino Glutared 92.7 0.052 1.1E-06 33.5 1.0 30 16-45 7-37 (77)
60 TIGR00014 arsC arsenate reduct 92.7 0.062 1.3E-06 37.4 1.4 36 16-51 6-42 (114)
61 TIGR02183 GRXA Glutaredoxin, G 92.5 0.063 1.4E-06 35.2 1.2 29 16-44 7-41 (86)
62 TIGR02181 GRX_bact Glutaredoxi 92.3 0.14 3E-06 32.4 2.6 27 86-112 6-33 (79)
63 PF04908 SH3BGR: SH3-binding, 91.9 0.03 6.6E-07 38.7 -0.9 49 6-54 3-53 (99)
64 cd03032 ArsC_Spx Arsenate Redu 91.7 0.15 3.2E-06 35.3 2.4 28 86-113 7-35 (115)
65 KOG1752 Glutaredoxin and relat 91.7 0.64 1.4E-05 32.3 5.5 37 3-44 13-50 (104)
66 cd02977 ArsC_family Arsenate R 91.6 0.16 3.5E-06 34.2 2.4 27 86-112 6-33 (105)
67 PF03960 ArsC: ArsC family; I 91.4 0.082 1.8E-06 36.2 0.8 35 16-50 3-38 (110)
68 cd03041 GST_N_2GST_N GST_N fam 91.0 0.17 3.6E-06 32.1 1.9 29 16-44 7-36 (77)
69 cd03035 ArsC_Yffb Arsenate Red 90.9 0.21 4.6E-06 34.3 2.5 27 86-112 6-33 (105)
70 TIGR02194 GlrX_NrdH Glutaredox 90.7 0.23 5.1E-06 31.1 2.4 27 86-112 6-33 (72)
71 cd03061 GST_N_CLIC GST_N famil 90.4 0.98 2.1E-05 30.6 5.4 54 5-58 5-64 (91)
72 cd00570 GST_N_family Glutathio 89.2 0.44 9.4E-06 27.7 2.6 27 17-43 7-34 (71)
73 PRK10329 glutaredoxin-like pro 88.7 0.43 9.2E-06 31.2 2.5 28 85-112 7-35 (81)
74 PRK12759 bifunctional gluaredo 88.1 0.52 1.1E-05 39.6 3.2 35 6-45 4-39 (410)
75 TIGR02180 GRX_euk Glutaredoxin 86.8 0.75 1.6E-05 28.7 2.7 26 86-111 6-34 (84)
76 TIGR01616 nitro_assoc nitrogen 86.4 0.65 1.4E-05 33.1 2.5 28 86-113 8-36 (126)
77 cd03033 ArsC_15kD Arsenate Red 86.2 0.68 1.5E-05 32.3 2.5 28 86-113 7-35 (113)
78 PRK10026 arsenate reductase; P 84.9 0.77 1.7E-05 33.6 2.3 27 86-112 9-36 (141)
79 COG1393 ArsC Arsenate reductas 84.0 0.96 2.1E-05 31.9 2.4 27 86-112 8-35 (117)
80 cd03045 GST_N_Delta_Epsilon GS 83.4 1.6 3.5E-05 26.7 3.1 25 16-40 6-31 (74)
81 cd03034 ArsC_ArsC Arsenate Red 83.3 1.1 2.3E-05 31.0 2.4 27 86-112 6-33 (112)
82 PRK11200 grxA glutaredoxin 1; 82.7 1.3 2.9E-05 28.4 2.5 27 86-112 8-40 (85)
83 cd03040 GST_N_mPGES2 GST_N fam 82.6 0.91 2E-05 28.3 1.7 24 17-40 8-32 (77)
84 cd03060 GST_N_Omega_like GST_N 82.0 1.9 4E-05 26.6 3.0 26 16-41 6-32 (71)
85 COG0695 GrxC Glutaredoxin and 81.7 2.6 5.7E-05 27.4 3.7 26 87-112 9-35 (80)
86 cd02976 NrdH NrdH-redoxin (Nrd 81.1 1.8 4E-05 25.7 2.6 26 86-111 7-33 (73)
87 TIGR02200 GlrX_actino Glutared 81.0 1.7 3.7E-05 26.5 2.5 26 86-111 7-33 (77)
88 TIGR02196 GlrX_YruB Glutaredox 80.4 1.8 4E-05 25.7 2.5 27 86-112 7-34 (74)
89 cd02973 TRX_GRX_like Thioredox 79.4 1.2 2.6E-05 26.9 1.4 32 17-48 9-46 (67)
90 TIGR00014 arsC arsenate reduct 79.3 1.8 3.9E-05 29.9 2.4 27 86-112 6-33 (114)
91 cd03061 GST_N_CLIC GST_N famil 79.2 3.3 7.1E-05 28.0 3.6 36 75-110 5-44 (91)
92 cd03059 GST_N_SspA GST_N famil 78.4 2.7 5.8E-05 25.5 2.8 26 16-41 6-32 (73)
93 cd03056 GST_N_4 GST_N family, 77.3 2.5 5.4E-05 25.5 2.4 26 16-41 6-32 (73)
94 cd03051 GST_N_GTT2_like GST_N 76.5 3.2 6.9E-05 25.0 2.7 25 16-40 6-31 (74)
95 TIGR02183 GRXA Glutaredoxin, G 74.9 3.2 6.9E-05 27.0 2.5 26 86-111 7-38 (86)
96 cd03060 GST_N_Omega_like GST_N 74.8 3.7 8.1E-05 25.2 2.7 25 86-110 6-31 (71)
97 cd03041 GST_N_2GST_N GST_N fam 72.2 4.6 0.0001 25.3 2.8 26 86-111 7-33 (77)
98 cd03040 GST_N_mPGES2 GST_N fam 72.0 3.9 8.5E-05 25.3 2.4 24 87-110 8-32 (77)
99 cd03055 GST_N_Omega GST_N fami 71.9 5.2 0.00011 25.9 3.0 26 16-41 24-50 (89)
100 cd03045 GST_N_Delta_Epsilon GS 70.5 5.8 0.00013 24.1 2.9 25 86-110 6-31 (74)
101 cd04911 ACT_AKiii-YclM-BS_1 AC 66.2 5.3 0.00011 26.3 2.1 31 8-38 4-34 (76)
102 PF13417 GST_N_3: Glutathione 65.9 1.1 2.5E-05 28.0 -1.1 27 16-42 4-31 (75)
103 cd03051 GST_N_GTT2_like GST_N 65.8 7.8 0.00017 23.2 2.7 25 86-110 6-31 (74)
104 TIGR02764 spore_ybaN_pdaB poly 63.5 16 0.00034 26.7 4.5 82 16-108 103-187 (191)
105 KOG2824 Glutaredoxin-related p 62.5 8.7 0.00019 31.3 3.1 30 23-52 151-181 (281)
106 cd03056 GST_N_4 GST_N family, 62.4 11 0.00023 22.6 2.9 25 86-110 6-31 (73)
107 PF03323 GerA: Bacillus/Clostr 61.7 17 0.00037 31.3 4.9 77 3-86 169-249 (470)
108 COG4545 Glutaredoxin-related p 60.2 9.6 0.00021 25.7 2.5 27 88-114 11-38 (85)
109 cd03037 GST_N_GRX2 GST_N famil 59.6 10 0.00022 23.0 2.5 26 16-41 6-32 (71)
110 PF04343 DUF488: Protein of un 58.6 38 0.00083 23.2 5.5 78 10-89 20-113 (122)
111 PF13728 TraF: F plasmid trans 58.6 9.6 0.00021 29.3 2.6 38 63-105 111-149 (215)
112 TIGR02739 TraF type-F conjugat 58.5 10 0.00023 30.2 2.9 39 63-106 141-180 (256)
113 cd03042 GST_N_Zeta GST_N famil 58.3 13 0.00029 22.2 2.8 24 17-40 7-31 (73)
114 cd03053 GST_N_Phi GST_N family 57.9 13 0.00028 22.6 2.8 22 17-38 8-29 (76)
115 PRK14812 hypothetical protein; 57.5 9.1 0.0002 27.3 2.2 18 18-35 1-19 (119)
116 PLN02817 glutathione dehydroge 54.9 8.9 0.00019 30.3 2.0 50 9-58 59-115 (265)
117 cd03055 GST_N_Omega GST_N fami 53.6 16 0.00034 23.6 2.7 25 86-110 24-49 (89)
118 PRK12759 bifunctional gluaredo 52.7 12 0.00025 31.5 2.4 32 75-111 3-35 (410)
119 PRK13703 conjugal pilus assemb 52.0 16 0.00034 29.1 2.9 38 64-106 135-173 (248)
120 cd03054 GST_N_Metaxin GST_N fa 51.6 15 0.00033 22.3 2.3 26 17-42 14-40 (72)
121 PRK09979 putative rho operon l 51.2 6.1 0.00013 21.8 0.3 22 10-31 6-27 (33)
122 PF05122 SpdB: Mobile element 50.6 6.6 0.00014 24.3 0.5 10 85-94 25-34 (53)
123 KOG0342 ATP-dependent RNA heli 50.3 48 0.001 29.4 5.8 69 35-113 286-360 (543)
124 cd03076 GST_N_Pi GST_N family, 50.3 18 0.00038 22.3 2.5 25 17-41 8-33 (73)
125 cd04890 ACT_AK-like_1 ACT doma 50.2 27 0.00058 20.6 3.2 31 8-38 3-33 (62)
126 cd03052 GST_N_GDAP1 GST_N fami 50.1 20 0.00044 22.3 2.7 25 16-40 6-31 (73)
127 TIGR02151 IPP_isom_2 isopenten 49.8 27 0.00058 28.5 4.0 39 63-105 167-206 (333)
128 cd03044 GST_N_EF1Bgamma GST_N 49.7 20 0.00043 22.1 2.6 26 16-41 6-32 (75)
129 COG4545 Glutaredoxin-related p 49.5 14 0.0003 25.0 1.9 26 18-43 11-37 (85)
130 cd02975 PfPDO_like_N Pyrococcu 49.4 22 0.00049 24.0 3.1 38 62-103 10-48 (113)
131 cd02947 TRX_family TRX family; 49.3 15 0.00033 22.0 2.0 34 17-50 20-59 (93)
132 PHA02125 thioredoxin-like prot 48.9 12 0.00026 23.4 1.5 18 16-33 7-24 (75)
133 PF00549 Ligase_CoA: CoA-ligas 48.1 16 0.00034 27.0 2.3 29 73-103 108-136 (153)
134 cd03050 GST_N_Theta GST_N fami 45.9 24 0.00052 21.6 2.6 24 17-40 7-31 (76)
135 cd03039 GST_N_Sigma_like GST_N 45.4 23 0.00049 21.5 2.4 24 17-40 7-31 (72)
136 cd04911 ACT_AKiii-YclM-BS_1 AC 45.4 20 0.00043 23.6 2.2 37 80-116 6-47 (76)
137 cd04934 ACT_AK-Hom3_1 CT domai 45.2 40 0.00087 21.4 3.6 34 5-38 1-34 (73)
138 KOG1422 Intracellular Cl- chan 44.9 38 0.00083 26.8 4.0 38 18-55 20-60 (221)
139 COG0527 LysC Aspartokinases [A 44.5 87 0.0019 26.9 6.5 101 4-107 306-416 (447)
140 cd03031 GRX_GRX_like Glutaredo 44.4 20 0.00043 26.2 2.3 25 88-112 15-40 (147)
141 TIGR02873 spore_ylxY probable 44.4 52 0.0011 26.1 4.8 78 17-108 183-263 (268)
142 cd03038 GST_N_etherase_LigE GS 42.5 74 0.0016 19.8 4.6 27 12-38 8-35 (84)
143 PF10777 YlaC: Inner membrane 41.7 19 0.00042 26.9 1.8 38 65-113 113-150 (155)
144 TIGR00862 O-ClC intracellular 41.3 30 0.00064 27.0 2.9 53 6-58 3-61 (236)
145 PF13409 GST_N_2: Glutathione 40.7 13 0.00027 23.0 0.6 22 19-40 2-24 (70)
146 smart00864 Tubulin Tubulin/Fts 40.7 85 0.0019 23.2 5.3 42 62-103 71-112 (192)
147 cd04935 ACT_AKiii-DAPDC_1 ACT 40.4 59 0.0013 20.6 3.8 33 6-38 2-34 (75)
148 COG2089 SpsE Sialic acid synth 38.9 1.6E+02 0.0036 24.8 7.0 81 23-111 33-135 (347)
149 PRK05437 isopentenyl pyrophosp 38.5 49 0.0011 27.3 4.0 39 63-105 174-213 (352)
150 TIGR02750 TraN_Ftype type-F co 38.2 19 0.0004 32.2 1.5 23 46-69 548-570 (572)
151 cd02811 IDI-2_FMN Isopentenyl- 37.6 54 0.0012 26.6 4.0 38 64-105 167-205 (326)
152 cd03026 AhpF_NTD_C TRX-GRX-lik 36.0 65 0.0014 21.1 3.6 48 63-112 3-53 (89)
153 PRK10456 arginine succinyltran 36.0 25 0.00054 29.4 1.9 21 92-112 232-254 (344)
154 PRK06756 flavodoxin; Provision 35.9 1.1E+02 0.0023 21.3 4.9 84 19-103 12-114 (148)
155 TIGR03244 arg_catab_AstA argin 35.7 26 0.00056 29.2 1.9 45 64-112 198-252 (336)
156 PF08358 Flexi_CP_N: Carlaviru 35.6 20 0.00043 22.1 0.9 17 77-93 33-49 (52)
157 cd02949 TRX_NTR TRX domain, no 35.6 37 0.0008 21.8 2.3 15 17-31 23-37 (97)
158 TIGR00862 O-ClC intracellular 35.1 57 0.0012 25.4 3.7 35 76-110 3-41 (236)
159 cd02020 CMPK Cytidine monophos 35.1 73 0.0016 21.4 3.9 69 8-79 2-71 (147)
160 TIGR03243 arg_catab_AOST argin 35.1 25 0.00054 29.4 1.7 21 92-112 230-252 (335)
161 TIGR03245 arg_AOST_alph argini 34.7 25 0.00055 29.3 1.7 21 92-112 231-253 (336)
162 TIGR00171 leuD 3-isopropylmala 34.6 30 0.00066 26.5 2.0 20 16-35 78-98 (188)
163 cd04919 ACT_AK-Hom3_2 ACT doma 34.6 95 0.0021 18.2 3.9 27 10-36 6-32 (66)
164 KOG3062 RNA polymerase II elon 34.6 1E+02 0.0023 25.0 5.1 79 9-89 5-94 (281)
165 cd03049 GST_N_3 GST_N family, 34.4 59 0.0013 19.5 3.0 25 16-40 6-33 (73)
166 TIGR00411 redox_disulf_1 small 34.2 43 0.00093 20.3 2.4 29 17-45 9-44 (82)
167 COG1105 FruK Fructose-1-phosph 34.1 1.9E+02 0.0042 23.8 6.7 88 20-110 61-166 (310)
168 TIGR02187 GlrX_arch Glutaredox 34.1 51 0.0011 24.7 3.2 36 69-106 16-52 (215)
169 PRK10387 glutaredoxin 2; Provi 34.0 41 0.0009 24.4 2.6 26 16-41 6-32 (210)
170 PLN02817 glutathione dehydroge 33.7 31 0.00066 27.2 2.0 23 88-110 72-95 (265)
171 TIGR03567 FMN_reduc_SsuE FMN r 32.8 1.6E+02 0.0036 21.1 5.6 32 7-40 2-38 (171)
172 KOG3347 Predicted nucleotide k 32.5 1.6E+02 0.0034 22.5 5.4 76 4-82 6-84 (176)
173 cd03080 GST_N_Metaxin_like GST 32.3 79 0.0017 19.3 3.4 23 18-40 16-39 (75)
174 cd04933 ACT_AK1-AT_1 ACT domai 32.2 94 0.002 20.1 3.8 33 6-38 2-34 (78)
175 PF13246 Hydrolase_like2: Puta 32.0 19 0.00041 23.7 0.5 12 74-85 71-82 (91)
176 KOG4023 Uncharacterized conser 31.8 31 0.00068 24.3 1.5 44 5-48 3-48 (108)
177 cd03058 GST_N_Tau GST_N family 31.2 48 0.001 20.1 2.2 22 17-38 7-28 (74)
178 KOG1086 Cytosolic sorting prot 30.8 1.2E+02 0.0026 26.8 5.2 39 12-58 124-165 (594)
179 PLN02378 glutathione S-transfe 30.4 67 0.0015 23.8 3.3 43 16-58 17-62 (213)
180 PF03065 Glyco_hydro_57: Glyco 30.4 23 0.0005 28.8 0.8 41 64-110 154-195 (360)
181 PF07056 DUF1335: Protein of u 30.1 49 0.0011 24.1 2.3 43 69-113 20-71 (131)
182 PF05768 DUF836: Glutaredoxin- 29.7 52 0.0011 20.9 2.2 31 17-47 8-43 (81)
183 PF10825 DUF2752: Protein of u 29.7 37 0.00079 20.5 1.4 19 11-30 8-26 (52)
184 PF04958 AstA: Arginine N-succ 29.2 32 0.0007 28.7 1.5 21 92-112 234-256 (342)
185 cd01577 IPMI_Swivel Aconatase- 27.9 50 0.0011 22.4 2.0 20 16-35 26-46 (91)
186 PRK10302 hypothetical protein; 27.7 1.7E+02 0.0036 23.5 5.2 38 64-101 217-254 (272)
187 cd01659 TRX_superfamily Thiore 27.7 38 0.00081 17.9 1.2 29 17-45 7-41 (69)
188 PRK09004 FMN-binding protein M 27.2 1.5E+02 0.0033 21.0 4.5 33 71-103 80-113 (146)
189 cd03048 GST_N_Ure2p_like GST_N 26.6 77 0.0017 19.5 2.6 19 20-38 10-28 (81)
190 PF11009 DUF2847: Protein of u 26.4 1E+02 0.0022 21.5 3.3 28 71-102 17-44 (105)
191 PRK00957 methionine synthase; 26.3 3.2E+02 0.0069 21.5 6.7 68 17-91 196-282 (305)
192 TIGR01295 PedC_BrcD bacterioci 26.1 1.3E+02 0.0028 20.7 3.9 46 66-111 15-62 (122)
193 PRK09481 sspA stringent starva 25.8 78 0.0017 23.3 2.9 26 16-41 16-42 (211)
194 PRK01641 leuD isopropylmalate 25.6 54 0.0012 25.3 2.0 19 17-35 77-96 (200)
195 cd04912 ACT_AKiii-LysC-EC-like 25.6 1.4E+02 0.003 18.5 3.7 29 10-38 6-34 (75)
196 PF00549 Ligase_CoA: CoA-ligas 25.6 76 0.0016 23.3 2.8 32 3-36 108-139 (153)
197 COG1717 RPL32 Ribosomal protei 25.3 36 0.00078 24.9 0.9 34 80-113 54-90 (133)
198 TIGR02884 spore_pdaA delta-lac 24.6 2.3E+02 0.0049 21.4 5.4 84 16-108 135-220 (224)
199 COG0066 LeuD 3-isopropylmalate 24.0 52 0.0011 25.5 1.7 21 15-35 70-91 (191)
200 PF13380 CoA_binding_2: CoA bi 23.9 2.4E+02 0.0053 19.2 7.6 86 12-105 7-105 (116)
201 PRK09739 hypothetical protein; 23.7 2.7E+02 0.006 20.4 5.5 36 5-42 4-44 (199)
202 cd00280 TRFH Telomeric Repeat 23.6 36 0.00079 26.5 0.8 37 60-103 102-138 (200)
203 TIGR02084 leud 3-isopropylmala 23.3 64 0.0014 23.9 2.0 20 16-35 56-76 (156)
204 PRK06703 flavodoxin; Provision 23.3 2E+02 0.0043 20.0 4.5 33 71-103 80-113 (151)
205 PRK10357 putative glutathione 23.2 1.2E+02 0.0025 21.9 3.4 43 17-59 7-52 (202)
206 cd01674 Homoaconitase_Swivel H 23.2 65 0.0014 23.4 1.9 20 16-35 54-74 (129)
207 PRK00170 azoreductase; Reviewe 22.8 2.7E+02 0.0059 20.0 5.3 34 7-41 4-44 (201)
208 PF09288 UBA_3: Fungal ubiquit 22.7 70 0.0015 19.9 1.8 16 20-35 20-36 (55)
209 cd01579 AcnA_Bact_Swivel Bacte 22.6 83 0.0018 22.3 2.4 21 15-35 56-77 (121)
210 PF08747 DUF1788: Domain of un 22.1 36 0.00078 24.3 0.4 45 62-110 81-125 (126)
211 cd07115 ALDH_HMSADH_HapE Pseud 21.8 1.1E+02 0.0024 25.5 3.4 37 63-103 135-171 (453)
212 cd02999 PDI_a_ERp44_like PDIa 21.0 1E+02 0.0022 20.2 2.5 32 72-107 17-49 (100)
213 TIGR02087 LEUD_arch 3-isopropy 20.9 76 0.0016 23.4 2.0 20 16-35 56-76 (154)
214 cd03043 GST_N_1 GST_N family, 20.8 1.2E+02 0.0025 18.6 2.6 25 16-40 7-32 (73)
215 cd02989 Phd_like_TxnDC9 Phosdu 20.8 1.4E+02 0.0029 20.1 3.1 28 72-103 21-48 (113)
216 PF02525 Flavodoxin_2: Flavodo 20.7 97 0.0021 22.6 2.5 37 6-43 2-44 (199)
217 PF08004 DUF1699: Protein of u 20.5 2.1E+02 0.0045 20.9 4.1 48 20-73 55-103 (131)
218 cd03047 GST_N_2 GST_N family, 20.5 1.4E+02 0.0029 18.0 2.8 22 19-40 9-31 (73)
219 PF03065 Glyco_hydro_57: Glyco 20.1 29 0.00062 28.3 -0.5 23 16-38 170-192 (360)
No 1
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6e-31 Score=182.47 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=76.5
Q ss_pred eeEeeecCCCCCCCCchHHHHHHHHHcC-CCCcc-CCCCCcccccccCCCcccCCChhhHHHHHH-HHhhcCCeeeeecC
Q 033504 6 SNLIFKGIASYPSARSSRIVSGSLYHNG-MKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVE-QDVKENPVMLYMKG 82 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~v~~l~~~~-~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~Ik-~li~~~~vvlfmKG 82 (118)
+||||||||++|+||||++++++|..+| ++|.+ |||+|+++|+++|.||+|||+| ++ .|+ ++|++++|+.-|--
T Consensus 17 VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~P-QL--yi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 17 VVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFP-QL--YVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred eEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCc-ee--eECCEEeccHHHHHHHHH
Confidence 7999999999999999999999999999 89999 9999999999999999999999 46 554 89999999988877
Q ss_pred CCCCCCCcchHHHHHHHHhc
Q 033504 83 VPEFPQCGFSSLAVRVLGAY 102 (118)
Q Consensus 83 tp~~P~CgFS~~~v~iL~~~ 102 (118)
|+++-++|++.
T Consensus 94 ---------~GELq~~l~~~ 104 (105)
T COG0278 94 ---------SGELQTLLKEA 104 (105)
T ss_pred ---------cchHHHHHHhc
Confidence 66777777654
No 2
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.5e-26 Score=177.42 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=75.3
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCChhhHHHHHH-HHhhcCCeeeeecC
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVE-QDVKENPVMLYMKG 82 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~Ik-~li~~~~vvlfmKG 82 (118)
.++|||||+|++|+||||+++|++|+++||+|++ |||+|+++|+++|.||+|||+| ++ +|+ +++++++|+.-|.-
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfP-Ql--yI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFP-QL--YVKGEFIGGLDILKEMHE 216 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCcc-ce--eECCEeccCcHHHHHHhh
Confidence 5899999999999999999999999999999999 9999999999999999999999 46 554 78888888888776
Q ss_pred CCCCCCCcchHHHHHHHHh
Q 033504 83 VPEFPQCGFSSLAVRVLGA 101 (118)
Q Consensus 83 tp~~P~CgFS~~~v~iL~~ 101 (118)
+..+.++|++
T Consensus 217 ---------~geL~~~l~~ 226 (227)
T KOG0911|consen 217 ---------KGELVYTLKE 226 (227)
T ss_pred ---------cccHHHHhhc
Confidence 5556666654
No 3
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.5e-20 Score=130.58 Aligned_cols=51 Identities=47% Similarity=0.948 Sum_probs=48.9
Q ss_pred hHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC--Ccceeehhh
Q 033504 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS--KFSYFCSFS 112 (118)
Q Consensus 62 ~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~--~~~~~dv~~ 112 (118)
++.++|++.|++|+|||||||||+.|+||||+++|+||+.+| +|.+||||+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~ 55 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ 55 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc
Confidence 578899999999999999999999999999999999999999 899999985
No 4
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.3e-17 Score=127.46 Aligned_cols=50 Identities=42% Similarity=0.761 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
++++++++++.++|||||||+|+.|+||||+++|+||+++| +|++||||+
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~ 178 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLT 178 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccC
Confidence 45599999999999999999999999999999999999999 999999985
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.68 E-value=1.5e-18 Score=123.05 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=75.3
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCChhhHHHHH-HHHhhcCCeeeeecC
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVV-EQDVKENPVMLYMKG 82 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~I-k~li~~~~vvlfmKG 82 (118)
=+||||||||+.|.|+||+++.++|.+.|++|.+ ||.+|++.++.++.+++|||.| ++ .| .++|++++.+.=|.-
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVP-QI--FI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFP-QL--WVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCC-eE--EECCEEEcChHHHHHHHH
Confidence 3799999999999999999999999999999999 9999999999999999999999 34 33 256666666665554
Q ss_pred CCCCCCCcchHHHHHHHHhcC-Ccc
Q 033504 83 VPEFPQCGFSSLAVRVLGAYS-KFS 106 (118)
Q Consensus 83 tp~~P~CgFS~~~v~iL~~~~-~~~ 106 (118)
++++.++|++.+ .|.
T Consensus 93 ---------~G~L~~lL~~~~~~~~ 108 (115)
T PRK10824 93 ---------RGELQQLIKETAAKYK 108 (115)
T ss_pred ---------CCCHHHHHHHHHhhhc
Confidence 667778887777 554
No 6
>PTZ00062 glutaredoxin; Provisional
Probab=99.54 E-value=2.3e-16 Score=121.28 Aligned_cols=56 Identities=30% Similarity=0.431 Sum_probs=54.3
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
=+||||||+|..|.|+|+++++++|+++|++|.+ ||.+|++.|+.++.+++|||.|
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvP 170 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYP 170 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCC
Confidence 3799999999999999999999999999999999 9999999999999999999998
No 7
>PRK10824 glutaredoxin-4; Provisional
Probab=99.45 E-value=1.3e-13 Score=97.74 Aligned_cols=51 Identities=41% Similarity=0.856 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 62 ~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
+..++|+++|++++||+||||||+.|.|+||+++.++|++.| +|.++||.+
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~ 54 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ 54 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC
Confidence 356799999999999999999999999999999999999999 999999874
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.38 E-value=1.8e-12 Score=99.63 Aligned_cols=51 Identities=29% Similarity=0.617 Sum_probs=48.7
Q ss_pred hHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 62 ~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
++.++++++|++++||+||||+|+.|.|+|+++++++|+++| .|..+||.+
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~ 152 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE 152 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC
Confidence 578899999999999999999999999999999999999999 999999974
No 9
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.24 E-value=3.7e-12 Score=87.02 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=53.6
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
=+++|+||+++.|.|+|++++.++|+++|++|.. ||.++++.++.++..++|+|.|
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP 69 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIP 69 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCC
Confidence 3789999999999999999999999999999999 9999999999999999999988
No 10
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.17 E-value=4.9e-11 Score=81.45 Aligned_cols=48 Identities=52% Similarity=0.998 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 65 ~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
+++++++++++|++|+||+++.|.|+|++++.++|+++| .|..+||.+
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~ 51 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE 51 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC
Confidence 588999999999999999999999999999999999999 999999964
No 11
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.14 E-value=2.1e-11 Score=81.80 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=53.4
Q ss_pred eeeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 4 SLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 4 ~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
-=+|+|+||+|+.|.|+|+.++.++|+++|++|.. ||.+|++.++.++..+++.|.|
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP 65 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFP 65 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCC
Confidence 34799999999999999999999999999999999 9999999999999888898887
No 12
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.07 E-value=1.3e-10 Score=77.83 Aligned_cols=46 Identities=43% Similarity=0.837 Sum_probs=43.1
Q ss_pred HHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 67 Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
|+++|++++|++||||+|+.|.|.|++++.++|++.| .|..+||.+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~ 47 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE 47 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC
Confidence 4678999999999999999999999999999999999 999999854
No 13
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.28 E-value=4.1e-08 Score=67.17 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=44.2
Q ss_pred eeeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcc---cccccCCCcccCCCh
Q 033504 4 SLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPD---THEDFRPTSKVDASG 60 (118)
Q Consensus 4 ~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d---~r~dlK~ys~wpT~p 60 (118)
.=+++|.| |.|+|++++.++|.++|++|.. ||-++++ .++.+...++|+|.|
T Consensus 8 ~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 8 KAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVP 63 (99)
T ss_pred CCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcC
Confidence 44788888 9999999999999999999999 9998876 445677777888888
No 14
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.70 E-value=4.1e-05 Score=52.27 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 68 EQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 68 k~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.++|++++|++|.| |.|+|+.++.++|+++| .|..+||..
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~ 42 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDK 42 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCC
Confidence 56899999999999 89999999999999999 999999864
No 15
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.66 E-value=7.4e-06 Score=50.26 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=40.7
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
|.|++++++.+.|+++|++|+. ||.+|++.++.++..+++.+.|
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVP 51 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccC
Confidence 8999999999999999999999 9999998899988887887777
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.66 E-value=2.8e-05 Score=49.41 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
|.|++++++.++|+++|++|+. ||.++++.++.++..+.+.+.|
T Consensus 9 ~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP 53 (73)
T cd03027 9 LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVP 53 (73)
T ss_pred CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 8999999999999999999999 9999988888887777776666
No 17
>PHA03050 glutaredoxin; Provisional
Probab=97.46 E-value=6.5e-06 Score=57.38 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=41.4
Q ss_pred eeEeeecCCCCCCCCchHHHHHHHHHcCC---CCcc-CCCC---CcccccccCCCcccCCCh
Q 033504 6 SNLIFKGIASYPSARSSRIVSGSLYHNGM---KYST-DVPN---DPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~v~~l~~~~~---~~~~-dVl~---d~d~r~dlK~ys~wpT~p 60 (118)
+++|-| |.|+|++++.++|+++++ +|+. ||-+ +++.++.++..+++.|.|
T Consensus 15 V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcC
Confidence 566766 669999999999999999 7877 8876 456788888888888877
No 18
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.43 E-value=7.4e-05 Score=45.37 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
|.|++++++..+|.+++++|.. |+..+++.++.++..+.+++.|
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P 52 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVP 52 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 5599999999999999999999 9999887777776665555554
No 19
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.38 E-value=7.2e-05 Score=47.90 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
.|.|+++.++.++|+++|++|.. ||-.|++.++.++..+++.+.|
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP 51 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVP 51 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcC
Confidence 48899999999999999999999 9999988888887766677666
No 20
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.34 E-value=0.00011 Score=46.17 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccC-CCh
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVD-ASG 60 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wp-T~p 60 (118)
|.|++++++..+|+++|++|.. ||..+++.++.+....++. +.|
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP 53 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVP 53 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccC
Confidence 8899999999999999999999 9998876666665444444 444
No 21
>PRK10638 glutaredoxin 3; Provisional
Probab=97.22 E-value=0.00015 Score=47.24 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=38.7
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
.|.|+|++++.++|.++|++|.. ||..+++.++.+...+.+.+.|
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP 54 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVP 54 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 47899999999999999999999 9998887788877766666666
No 22
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.02 E-value=0.00044 Score=44.76 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=37.8
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
-++||.| |.|++++++.+.|.++|++|+. ||.+|++. ..++..+.+.+.|
T Consensus 9 ~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcC
Confidence 3567766 9999999999999999999999 99776543 2344445555555
No 23
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.86 E-value=0.00086 Score=42.27 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.3
Q ss_pred eeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh
Q 033504 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p 60 (118)
+++|.| |.|+|++++.++|+++|++|.. ||.++++ ...++..+.+.+.|
T Consensus 3 v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcC
Confidence 345555 8999999999999999999999 9987763 33444445555555
No 24
>PHA03050 glutaredoxin; Provisional
Probab=96.63 E-value=0.0033 Score=43.69 Aligned_cols=43 Identities=28% Similarity=0.465 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-C---cceeehh
Q 033504 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-K---FSYFCSF 111 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~---~~~~dv~ 111 (118)
.+.++++|++++|++|-+. .|+|++++.++|+++| . |..+||-
T Consensus 3 ~~~v~~~i~~~~V~vys~~-----~CPyC~~ak~~L~~~~i~~~~~~~i~i~ 49 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKF-----TCPFCRNALDILNKFSFKRGAYEIVDIK 49 (108)
T ss_pred HHHHHHHhccCCEEEEECC-----CChHHHHHHHHHHHcCCCcCCcEEEECC
Confidence 4688999999999999986 5999999999999998 3 6666664
No 25
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.55 E-value=0.0013 Score=41.79 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=34.4
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcc---cccccCCCcccCCCh
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPD---THEDFRPTSKVDASG 60 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d---~r~dlK~ys~wpT~p 60 (118)
+.|++++++.++|.+.+++|.. ++-.+++ .++.++..+++++.|
T Consensus 8 ~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P 55 (82)
T cd03419 8 SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVP 55 (82)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCC
Confidence 8999999999999999999888 7766543 445566666666666
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.48 E-value=0.0013 Score=41.63 Aligned_cols=35 Identities=9% Similarity=0.324 Sum_probs=29.7
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCccccccc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDF 50 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dl 50 (118)
.|.|++++++.+.|.++|++|+. ||-+|++.++.+
T Consensus 6 ~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~ 41 (72)
T TIGR02194 6 KNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYV 41 (72)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHH
Confidence 37899999999999999999999 998886544443
No 27
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.38 E-value=0.0017 Score=44.94 Aligned_cols=37 Identities=24% Similarity=0.597 Sum_probs=32.8
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
.|.|++++++.+.|.++|++|.. |+.+++..++.++.
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~ 43 (111)
T cd03036 6 YPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKK 43 (111)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHH
Confidence 38899999999999999999999 99999887766653
No 28
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.01 E-value=0.0034 Score=44.86 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
.|.|++++++.+.|.++|++|.. |+.+++..++.++.
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~ 44 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQ 44 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHH
Confidence 38899999999999999999999 99998887666543
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.77 E-value=0.0054 Score=40.35 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=28.8
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCccccc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHE 48 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~ 48 (118)
.|.|++++++.+.|.+.|++|+. ||-+|++.++
T Consensus 8 ~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~ 41 (81)
T PRK10329 8 RNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE 41 (81)
T ss_pred CCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 48899999999999999999999 9998765433
No 30
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.77 E-value=0.014 Score=37.54 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=32.3
Q ss_pred hhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 71 i~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
-++++|+||.+ |.|.+++++.++|+++| .|...||-
T Consensus 5 ~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~ 41 (79)
T TIGR02190 5 RKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLG 41 (79)
T ss_pred CCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECC
Confidence 35788999988 89999999999999999 99999974
No 31
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.76 E-value=0.005 Score=42.70 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPT 53 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~y 53 (118)
.|.|++++++.+.|.++|++|.. |+.+++..++.++..
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~ 45 (115)
T cd03032 7 SPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEI 45 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHH
Confidence 38899999999999999999999 999988776666543
No 32
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.70 E-value=0.0056 Score=41.47 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=33.7
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTS 54 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys 54 (118)
.|.|++++++.+.|+++|++|.. |+.+++...+.++...
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 6 NPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 37899999999999999999999 9999888777666544
No 33
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.49 E-value=0.0068 Score=42.11 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=32.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR 51 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK 51 (118)
.|.|++++++.+.|.++|++|.. |+.+++.+++.+.
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~ 42 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELL 42 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHH
Confidence 48899999999999999999999 9999888766654
No 34
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.46 E-value=0.0073 Score=41.65 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR 51 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK 51 (118)
.|.|+.++++.+.|.++|++|.. |+.++|-+.+.++
T Consensus 6 ~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~ 42 (105)
T cd03035 6 IKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLE 42 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHH
Confidence 48999999999999999999999 9999876554443
No 35
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.45 E-value=0.0057 Score=44.98 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=39.5
Q ss_pred eecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcc----cCCCh
Q 033504 10 FKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSK----VDASG 60 (118)
Q Consensus 10 mKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~----wpT~p 60 (118)
|+|... -|.+.+++.++|++++|+|.. ||..|++.++.++.... |+|.|
T Consensus 9 l~giR~--t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvP 62 (147)
T cd03031 9 LRGVRK--TFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLP 62 (147)
T ss_pred CcCCCC--cChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCC
Confidence 444432 467779999999999999999 99999998888877654 58877
No 36
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.42 E-value=0.0065 Score=39.52 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCCCchHHHHHHHHH-----cCCCCcc-CCCCCcccccccCCCcc
Q 033504 17 PSARSSRIVSGSLYH-----NGMKYST-DVPNDPDTHEDFRPTSK 55 (118)
Q Consensus 17 P~CgfS~~~v~~l~~-----~~~~~~~-dVl~d~d~r~dlK~ys~ 55 (118)
|.|++++++.+.|++ .+++|.. ||.+|+..++.++...+
T Consensus 9 ~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~ 53 (85)
T PRK11200 9 PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVG 53 (85)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHC
Confidence 679999999999999 7899999 99987654445544333
No 37
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.12 E-value=0.03 Score=35.20 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=28.6
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
+|+||-+ |.|.+++++.++|+++| .|..+||.+
T Consensus 2 ~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~ 35 (73)
T cd03027 2 RVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDI 35 (73)
T ss_pred EEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCC
Confidence 4666665 79999999999999999 999999864
No 38
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.10 E-value=0.011 Score=37.36 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=32.1
Q ss_pred CCCCCchHHHHHHHHHcCCC--Ccc-CCCCCc---ccccccCCCcccCCCh
Q 033504 16 YPSARSSRIVSGSLYHNGMK--YST-DVPNDP---DTHEDFRPTSKVDASG 60 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~--~~~-dVl~d~---d~r~dlK~ys~wpT~p 60 (118)
.|.|++++++.++|.+++++ |.. +|-.++ +.++.++...++++.|
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP 56 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVP 56 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCC
Confidence 48999999999999999998 777 777653 2344454444455544
No 39
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.06 E-value=0.028 Score=34.06 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCCcchHHHHHHHHhcC-Ccceeehhhh
Q 033504 87 PQCGFSSLAVRVLGAYS-KFSYFCSFSI 113 (118)
Q Consensus 87 P~CgFS~~~v~iL~~~~-~~~~~dv~~~ 113 (118)
|.|.+.+++.++|++.| .|..+||.+.
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 88999999999999999 9999999764
No 40
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.05 E-value=0.01 Score=42.54 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPT 53 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~y 53 (118)
.|.|.+++++.+.|.++|++|.. |+.+++-+++.++..
T Consensus 7 ~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~ 45 (131)
T PRK12559 7 TASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSI 45 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHH
Confidence 38899999999999999999999 999988876666543
No 41
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.05 E-value=0.032 Score=34.75 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred eeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 76 vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
|++|-+ |.|.++.++.++|+++| .|..+||.+
T Consensus 2 i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDG 34 (75)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCC
Confidence 455544 78999999999999999 999999864
No 42
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.04 E-value=0.01 Score=35.97 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=29.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCccccccc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDF 50 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dl 50 (118)
.+.|++++++...|.+.+++|.. |+-++++.++.+
T Consensus 7 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~ 42 (74)
T TIGR02196 7 TPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEV 42 (74)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHH
Confidence 47899999999999999999999 998876654443
No 43
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=94.97 E-value=0.013 Score=41.11 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
.|.|.-++++.+.|.++|++|+. |+++++-+++.++.
T Consensus 7 ~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~ 44 (113)
T cd03033 7 KPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRP 44 (113)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHH
Confidence 48899999999999999999999 99998866555543
No 44
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.84 E-value=0.016 Score=41.47 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=31.6
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
|.|.-+|++.+.|.++|++|+. |+++++-+++.++.
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~ 45 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILKEPWHADTLRP 45 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHH
Confidence 7899999999999999999999 99998876665554
No 45
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.84 E-value=0.015 Score=41.75 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
.|.|+.++++.+.|.++|++|+. |+..++-+++.++.
T Consensus 7 ~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~ 44 (132)
T PRK13344 7 ISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILA 44 (132)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHH
Confidence 48899999999999999999999 99988877666654
No 46
>PRK10026 arsenate reductase; Provisional
Probab=94.79 E-value=0.015 Score=42.63 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
.|.|+-||++.+.|.++|++|+. |+++++-+++.++.
T Consensus 9 ~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~ 46 (141)
T PRK10026 9 NPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVK 46 (141)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHH
Confidence 38899999999999999999999 99998876665543
No 47
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.016 Score=41.02 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
.|.|+-++.+...|+++|++|.. |+++++-+++.|+.
T Consensus 8 ~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~ 45 (117)
T COG1393 8 NPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKK 45 (117)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHH
Confidence 48899999999999999999999 99998887777754
No 48
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.086 Score=36.73 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.+.+++++.+++||+|-| +.|-|+.++-++|.+.+ .+..+.+.+
T Consensus 4 ~~~v~~~i~~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~ 48 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDE 48 (104)
T ss_pred HHHHHHHhhcCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccC
Confidence 457999999999999998 58999999999999998 888777654
No 49
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.67 E-value=0.048 Score=32.64 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=27.7
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
+|++|.+. .|.+++++..+|++++ .|..+||.+
T Consensus 1 ~v~ly~~~-----~Cp~C~~~~~~L~~~~i~~~~~di~~ 34 (72)
T cd02066 1 KVVVFSKS-----TCPYCKRAKRLLESLGIEFEEIDILE 34 (72)
T ss_pred CEEEEECC-----CCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 46677654 4999999999999999 999999854
No 50
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=94.59 E-value=0.014 Score=39.71 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=41.8
Q ss_pred eeeEeeecCCCCCCCCc-hHHHHHHHHHcCCCCcc-CCCCCcccccccCCCccc----CCCh
Q 033504 5 LSNLIFKGIASYPSARS-SRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV----DASG 60 (118)
Q Consensus 5 ~~~lfmKG~~~~P~Cgf-S~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~w----pT~p 60 (118)
+++||+-......+..- ..++..+|...+++|.. ||-.|++.|+.++..+.+ +|.|
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvP 62 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPP 62 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCC
Confidence 35677666555555554 33778899999999999 999999999988766543 6655
No 51
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.027 Score=36.96 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCc--ccccccCCCcccCCCh
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDP--DTHEDFRPTSKVDASG 60 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~--d~r~dlK~ys~wpT~p 60 (118)
|-|.|+.++.++|+..|++|.. |+-.++ +.++.++..+...|.|
T Consensus 9 ~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP 55 (80)
T COG0695 9 PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVP 55 (80)
T ss_pred CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcC
Confidence 5599999999999999999999 998877 4445554443333433
No 52
>PRK10853 putative reductase; Provisional
Probab=94.02 E-value=0.028 Score=39.61 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR 51 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK 51 (118)
.|.|+-|+++.+.|.++|++|+. |+.+++-+.+.++
T Consensus 7 ~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~ 43 (118)
T PRK10853 7 IKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQ 43 (118)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHH
Confidence 47899999999999999999999 9998776554443
No 53
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.00 E-value=0.078 Score=33.36 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=27.3
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
||++|.+ +.|++++++.++|++.+ .|..+||-
T Consensus 1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~ 33 (82)
T cd03419 1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELD 33 (82)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4666664 78999999999999999 99988874
No 54
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.86 E-value=0.087 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=28.7
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
+|++|.+ |.|.|+.++.++|+++| .|...||-+
T Consensus 2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~ 35 (72)
T cd03029 2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGK 35 (72)
T ss_pred eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence 5677766 78999999999999999 999999854
No 55
>PRK10638 glutaredoxin 3; Provisional
Probab=93.83 E-value=0.1 Score=33.73 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.5
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
+|.+|- .|.|.|++++.++|+++| .|..+||.
T Consensus 3 ~v~ly~-----~~~Cp~C~~a~~~L~~~gi~y~~~dv~ 35 (83)
T PRK10638 3 NVEIYT-----KATCPFCHRAKALLNSKGVSFQEIPID 35 (83)
T ss_pred cEEEEE-----CCCChhHHHHHHHHHHcCCCcEEEECC
Confidence 466665 467999999999999999 99999984
No 56
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.66 E-value=0.039 Score=33.34 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=27.7
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCccccccc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDF 50 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dl 50 (118)
.+.|++++++..+|.+.+++|.. |+-.+++.++.+
T Consensus 7 ~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~ 42 (73)
T cd02976 7 KPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEEL 42 (73)
T ss_pred CCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHH
Confidence 46799999999999999999998 886655444443
No 57
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.63 E-value=0.038 Score=38.28 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR 51 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK 51 (118)
.|.|+-++++.+.|+++|++|.. |+.+++-+.+.++
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~ 42 (112)
T cd03034 6 NPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELR 42 (112)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHH
Confidence 48899999999999999999999 9998876555544
No 58
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=92.86 E-value=0.081 Score=36.50 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=24.8
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.+++++.+.|+++| .|...||.+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 6 YPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 478999999999999999 999999864
No 59
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=92.74 E-value=0.052 Score=33.53 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=26.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d 45 (118)
.+.|++++++...|.+++++|.. |+-++++
T Consensus 7 ~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~ 37 (77)
T TIGR02200 7 TTWCGYCAQLMRTLDKLGAAYEWVDIEEDEG 37 (77)
T ss_pred CCCChhHHHHHHHHHHcCCceEEEeCcCCHh
Confidence 37899999999999999999998 9876654
No 60
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.73 E-value=0.062 Score=37.36 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR 51 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK 51 (118)
.|.|.-++++.+.|.++|++|.. |+.++|-+.+.++
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~ 42 (114)
T TIGR00014 6 NPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELE 42 (114)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHH
Confidence 48899999999999999999999 9998877655554
No 61
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=92.49 E-value=0.063 Score=35.24 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=23.1
Q ss_pred CCCCCchHHHHHHHHHcC-----CCCcc-CCCCCc
Q 033504 16 YPSARSSRIVSGSLYHNG-----MKYST-DVPNDP 44 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~-----~~~~~-dVl~d~ 44 (118)
.|.|+|++++.+.|.+.+ ++|.. ||..+.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~ 41 (86)
T TIGR02183 7 RPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG 41 (86)
T ss_pred CCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH
Confidence 379999999999999985 45666 777654
No 62
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.35 E-value=0.14 Score=32.41 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.++.++.++|+++| .|..+||.+
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~ 33 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDG 33 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecC
Confidence 478999999999999999 999999854
No 63
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.90 E-value=0.03 Score=38.73 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=31.2
Q ss_pred eeEeeecCCCCCCCCc-hHHHHHHHHHcCCCCcc-CCCCCcccccccCCCc
Q 033504 6 SNLIFKGIASYPSARS-SRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTS 54 (118)
Q Consensus 6 ~~lfmKG~~~~P~Cgf-S~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys 54 (118)
+.||.-++-..++=.- ..++..+|..++++|+. ||..|++.|+..+...
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~ 53 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENA 53 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhc
Confidence 4455544444333221 34789999999999999 9999999888887544
No 64
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=91.71 E-value=0.15 Score=35.27 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=25.4
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFSI 113 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~~ 113 (118)
.|.|.+++++.+.|+++| .|...|+.+-
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~idi~~~ 35 (115)
T cd03032 7 SPSCSSCRKAKQWLEEHQIPFEERNLFKQ 35 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEecCCC
Confidence 578999999999999999 9999998653
No 65
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.64 Score=32.35 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=28.5
Q ss_pred ceeeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCc
Q 033504 3 RSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDP 44 (118)
Q Consensus 3 ~~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~ 44 (118)
+.=+|+|-| +.|.|+.++-.+|...++.+.. .+-+++
T Consensus 13 ~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~~~ 50 (104)
T KOG1752|consen 13 ENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDEDE 50 (104)
T ss_pred cCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccCCC
Confidence 344778877 7899999999999999988776 544443
No 66
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.56 E-value=0.16 Score=34.21 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.+++++.+.|+++| .|...||.+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 6 NPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 478999999999999999 999999965
No 67
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=91.45 E-value=0.082 Score=36.18 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=24.8
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCccccccc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDF 50 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dl 50 (118)
.|.|+-++++.+.|.++|++|.. |+.+++-+++.+
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el 38 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREEL 38 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHH
Confidence 48899999999999999999999 999877654444
No 68
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=90.98 E-value=0.17 Score=32.13 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDP 44 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~ 44 (118)
.|-|+|++++...|...|++|.. +|..++
T Consensus 7 ~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~ 36 (77)
T cd03041 7 FEGSPFCRLVREVLTELELDVILYPCPKGS 36 (77)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEECCCCh
Confidence 46789999999999999999998 886543
No 69
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=90.87 E-value=0.21 Score=34.28 Aligned_cols=27 Identities=15% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|+-++++.+.|+++| .|...|+.+
T Consensus 6 ~~~C~~crka~~~L~~~~i~~~~~di~~ 33 (105)
T cd03035 6 IKNCDTVKKARKWLEARGVAYTFHDYRK 33 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEeccc
Confidence 589999999999999999 999999975
No 70
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.67 E-value=0.23 Score=31.09 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=24.3
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.+++++.+.|+++| .|...||-+
T Consensus 6 ~~~Cp~C~~ak~~L~~~~i~~~~~di~~ 33 (72)
T TIGR02194 6 KNNCVQCKMTKKALEEHGIAFEEINIDE 33 (72)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEECCC
Confidence 468999999999999999 999999863
No 71
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=90.42 E-value=0.98 Score=30.59 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=39.0
Q ss_pred eeeEeeecCCCC---CCCCchHHHHHHHHHcCCCCcc-CC--CCCcccccccCCCcccCC
Q 033504 5 LSNLIFKGIASY---PSARSSRIVSGSLYHNGMKYST-DV--PNDPDTHEDFRPTSKVDA 58 (118)
Q Consensus 5 ~~~lfmKG~~~~---P~CgfS~~~v~~l~~~~~~~~~-dV--l~d~d~r~dlK~ys~wpT 58 (118)
-+-||+|..+.. .-|.|++++.=+|...|++|+. +| ...|+-.-.+.|+...|+
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPv 64 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPF 64 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCE
Confidence 355788876544 4599999999999999999987 55 444544445566666665
No 72
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.20 E-value=0.44 Score=27.69 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPND 43 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d 43 (118)
|.|++++++.-+|...|++|.. ++-.+
T Consensus 7 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 34 (71)
T cd00570 7 PGSPRSLRVRLALEEKGLPYELVPVDLG 34 (71)
T ss_pred CCCccHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4599999999999999999988 66543
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=88.66 E-value=0.43 Score=31.19 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=24.9
Q ss_pred CCCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 85 EFPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 85 ~~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
..|.|.+++++-+.|.+.| .|+..||.+
T Consensus 7 t~~~Cp~C~~ak~~L~~~gI~~~~idi~~ 35 (81)
T PRK10329 7 TRNDCVQCHATKRAMESRGFDFEMINVDR 35 (81)
T ss_pred eCCCCHhHHHHHHHHHHCCCceEEEECCC
Confidence 3578999999999999999 999999863
No 74
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.12 E-value=0.52 Score=39.61 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=29.6
Q ss_pred eeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcc
Q 033504 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d 45 (118)
|++|-| |.|++..++.+.|.++|++|.. ||-+|++
T Consensus 4 V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~ 39 (410)
T PRK12759 4 VRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVK 39 (410)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChh
Confidence 455544 8899999999999999999999 9987664
No 75
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=86.84 E-value=0.75 Score=28.72 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred CCCCcchHHHHHHHHhcC-C--cceeehh
Q 033504 86 FPQCGFSSLAVRVLGAYS-K--FSYFCSF 111 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~--~~~~dv~ 111 (118)
.|.|.+++++.++|++++ . |..+||-
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~ 34 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELD 34 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEee
Confidence 478999999999999999 6 8888874
No 76
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=86.41 E-value=0.65 Score=33.12 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=25.6
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFSI 113 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~~ 113 (118)
.|.|.=++++.+.|+++| .|.+.|+++-
T Consensus 8 ~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 8 KPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 478999999999999999 9999999764
No 77
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=86.15 E-value=0.68 Score=32.30 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=25.6
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFSI 113 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~~ 113 (118)
.|.|.-++++.+.|+++| .|...|+++-
T Consensus 7 ~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 7 KPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 589999999999999999 9999999763
No 78
>PRK10026 arsenate reductase; Provisional
Probab=84.88 E-value=0.77 Score=33.56 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.=|+++.+.|+++| .|.+.|+++
T Consensus 9 ~p~Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 9 NPACGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 588999999999999999 999999875
No 79
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=84.01 E-value=0.96 Score=31.92 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=24.8
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|+=++.+.+.|+++| .|...|+++
T Consensus 8 ~p~C~t~rka~~~L~~~gi~~~~~~y~~ 35 (117)
T COG1393 8 NPNCSTCRKALAWLEEHGIEYTFIDYLK 35 (117)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEEEeec
Confidence 588999999999999999 999999874
No 80
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=83.37 E-value=1.6 Score=26.66 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
.|.|++++++.-+|...|++|+. +|
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~e~~~i 31 (74)
T cd03045 6 LPGSPPCRAVLLTAKALGLELNLKEV 31 (74)
T ss_pred CCCCCcHHHHHHHHHHcCCCCEEEEe
Confidence 47899999999999999999987 55
No 81
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=83.28 E-value=1.1 Score=30.96 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.=++++.+.|+++| .|.+.|+.+
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (112)
T cd03034 6 NPRCSKSRNALALLEEAGIEPEIVEYLK 33 (112)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccc
Confidence 478999999999999999 999999865
No 82
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=82.75 E-value=1.3 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCCcchHHHHHHHHh-----cC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGA-----YS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~-----~~-~~~~~dv~~ 112 (118)
.|.|++.+++.+.|++ .+ .|...||-+
T Consensus 8 ~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 8 RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 3579999999999999 67 888888853
No 83
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=82.62 E-value=0.91 Score=28.27 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
+.|+|++++...|...|++|+. ++
T Consensus 8 ~~~p~c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 8 KTCPFCCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEEC
Confidence 6799999999999999999998 66
No 84
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=81.99 E-value=1.9 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.+-|+||+++.-+|...|++|+. +|-
T Consensus 6 ~~~~p~~~rv~~~L~~~gl~~e~~~v~ 32 (71)
T cd03060 6 FRRCPYAMRARMALLLAGITVELREVE 32 (71)
T ss_pred cCCCcHHHHHHHHHHHcCCCcEEEEeC
Confidence 46799999999999999999987 543
No 85
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=81.66 E-value=2.6 Score=27.36 Aligned_cols=26 Identities=19% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 87 PQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 87 P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
|-|.|.+++-++|++.| +|...|+-+
T Consensus 9 ~~CPyC~~ak~~L~~~g~~~~~i~~~~ 35 (80)
T COG0695 9 PGCPYCKRAKRLLDRKGVDYEEIDVDD 35 (80)
T ss_pred CCCchHHHHHHHHHHcCCCcEEEEecC
Confidence 44999999999999999 999988754
No 86
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=81.11 E-value=1.8 Score=25.69 Aligned_cols=26 Identities=19% Similarity=0.269 Sum_probs=22.9
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
.+.|+++.++..+|++.+ .|..+|+.
T Consensus 7 ~~~c~~c~~~~~~l~~~~i~~~~~~i~ 33 (73)
T cd02976 7 KPDCPYCKATKRFLDERGIPFEEVDVD 33 (73)
T ss_pred CCCChhHHHHHHHHHHCCCCeEEEeCC
Confidence 357999999999999999 99998874
No 87
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=81.03 E-value=1.7 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
.+.|++++++...|++.+ .|...|+-
T Consensus 7 ~~~C~~C~~~~~~L~~~~~~~~~idi~ 33 (77)
T TIGR02200 7 TTWCGYCAQLMRTLDKLGAAYEWVDIE 33 (77)
T ss_pred CCCChhHHHHHHHHHHcCCceEEEeCc
Confidence 368999999999999999 99998875
No 88
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=80.45 E-value=1.8 Score=25.70 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=23.7
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.+.|++++++...|++.+ .|...||-+
T Consensus 7 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~ 34 (74)
T TIGR02196 7 TPWCPPCKKAKEYLTSKGIAFEEIDVEK 34 (74)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeccC
Confidence 467999999999999999 999998854
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=79.36 E-value=1.2 Score=26.90 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHc-----CCCCcc-CCCCCccccc
Q 033504 17 PSARSSRIVSGSLYHN-----GMKYST-DVPNDPDTHE 48 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~-----~~~~~~-dVl~d~d~r~ 48 (118)
|.|+++.++.++|.+. +++|.. |+-++++..+
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~ 46 (67)
T cd02973 9 PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLAD 46 (67)
T ss_pred CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHH
Confidence 6799989888888764 467777 8776655433
No 90
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=79.26 E-value=1.8 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
.|.|.=++++...|+++| .|.+.|+.+
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (114)
T TIGR00014 6 NPRCSKSRNTLALLEDKGIEPEVVKYLK 33 (114)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccC
Confidence 478999999999999999 999999875
No 91
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=79.18 E-value=3.3 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=29.5
Q ss_pred CeeeeecCCCCCC---CCcchHHHHHHHHhcC-Ccceeeh
Q 033504 75 PVMLYMKGVPEFP---QCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 75 ~vvlfmKGtp~~P---~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.+-||+|..+..+ -|-||.++.=+|.+.| .|+..+|
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~v 44 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTV 44 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEe
Confidence 4567888776544 4999999999999999 9987766
No 92
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.39 E-value=2.7 Score=25.53 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.|-|.+++++.-.|...|++|.. ++-
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~~~~~v~ 32 (73)
T cd03059 6 GPDDVYSHRVRIVLAEKGVSVEIIDVD 32 (73)
T ss_pred CCCChhHHHHHHHHHHcCCccEEEEcC
Confidence 35688999999999999999987 553
No 93
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.27 E-value=2.5 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.|.|++++++.-.|...|++|+. +|-
T Consensus 6 ~~~~~~~~~v~~~l~~~~~~~~~~~i~ 32 (73)
T cd03056 6 FPLSGNCYKVRLLLALLGIPYEWVEVD 32 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEec
Confidence 46789999999999999999988 653
No 94
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=76.49 E-value=3.2 Score=24.97 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.6
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
.|.|.+|+++.-+|...|++|+. .+
T Consensus 6 ~~~s~~~~~~~~~L~~~~l~~~~~~v 31 (74)
T cd03051 6 SPTAPNPRRVRIFLAEKGIDVPLVTV 31 (74)
T ss_pred CCCCcchHHHHHHHHHcCCCceEEEe
Confidence 46799999999999999999987 44
No 95
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=74.85 E-value=3.2 Score=26.98 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.2
Q ss_pred CCCCcchHHHHHHHHhcC------Ccceeehh
Q 033504 86 FPQCGFSSLAVRVLGAYS------KFSYFCSF 111 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~------~~~~~dv~ 111 (118)
.|.|.|.+++.++|++.+ .|...||-
T Consensus 7 ~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~ 38 (86)
T TIGR02183 7 RPGCPYCVRAKQLAEKLAIERADFEFRYIDIH 38 (86)
T ss_pred CCCCccHHHHHHHHHHhCcccCCCcEEEEECC
Confidence 468999999999999985 46667764
No 96
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.79 E-value=3.7 Score=25.16 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.8
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.+.|.||.++.-+|++.| .|+..+|
T Consensus 6 ~~~~p~~~rv~~~L~~~gl~~e~~~v 31 (71)
T cd03060 6 FRRCPYAMRARMALLLAGITVELREV 31 (71)
T ss_pred cCCCcHHHHHHHHHHHcCCCcEEEEe
Confidence 467999999999999999 9987765
No 97
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=72.23 E-value=4.6 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
.|-|.|+.++...|.++| .|+..||.
T Consensus 7 ~~~sp~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 7 FEGSPFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEECC
Confidence 467899999999999999 99988873
No 98
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=71.96 E-value=3.9 Score=25.27 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.7
Q ss_pred CCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 87 PQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 87 P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
+.|.|++++...|.+.| .|+..++
T Consensus 8 ~~~p~c~kv~~~L~~~gi~y~~~~~ 32 (77)
T cd03040 8 KTCPFCCKVRAFLDYHGIPYEVVEV 32 (77)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEEC
Confidence 56999999999999999 9988776
No 99
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=71.86 E-value=5.2 Score=25.91 Aligned_cols=26 Identities=4% Similarity=-0.061 Sum_probs=22.5
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.+.|.|++++.-+|...|++|+. ++-
T Consensus 24 ~~~sp~~~kv~~~L~~~gl~~~~~~v~ 50 (89)
T cd03055 24 MRFCPYAQRARLVLAAKNIPHEVININ 50 (89)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEEeC
Confidence 46799999999999999999987 654
No 100
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=70.50 E-value=5.8 Score=24.08 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=21.8
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.|.|++++++.-.|.+.| .|+..+|
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~e~~~i 31 (74)
T cd03045 6 LPGSPPCRAVLLTAKALGLELNLKEV 31 (74)
T ss_pred CCCCCcHHHHHHHHHHcCCCCEEEEe
Confidence 467999999999999999 9987765
No 101
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.23 E-value=5.3 Score=26.34 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=24.3
Q ss_pred EeeecCCCCCCCCchHHHHHHHHHcCCCCcc
Q 033504 8 LIFKGIASYPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 8 lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
++++=.-....=||.|+++++|..+|++|+.
T Consensus 4 I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh 34 (76)
T cd04911 4 IYISKYLMNREVGFGRKLLSILEDNGISYEH 34 (76)
T ss_pred EehhHhhccchhcHHHHHHHHHHHcCCCEee
Confidence 3344444566779999999999999999885
No 102
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=65.89 E-value=1.1 Score=27.96 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPN 42 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~ 42 (118)
.+.|.||+++--+|...|++|.. +|..
T Consensus 4 ~~~Sp~~~kv~~~l~~~~i~~~~~~v~~ 31 (75)
T PF13417_consen 4 FPGSPYSQKVRLALEEKGIPYELVPVDP 31 (75)
T ss_dssp ETTSHHHHHHHHHHHHHTEEEEEEEEBT
T ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCc
Confidence 37799999999999999999888 6654
No 103
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=65.83 E-value=7.8 Score=23.17 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=21.3
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.|.|.+|+++.-+|+..| .|+...|
T Consensus 6 ~~~s~~~~~~~~~L~~~~l~~~~~~v 31 (74)
T cd03051 6 SPTAPNPRRVRIFLAEKGIDVPLVTV 31 (74)
T ss_pred CCCCcchHHHHHHHHHcCCCceEEEe
Confidence 467999999999999999 8887654
No 104
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=63.50 E-value=16 Score=26.71 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=47.4
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCChhhHHHHHHHHhhcCCeeeeec-CCCCCCCCcchH
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMK-GVPEFPQCGFSS 93 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~Ik~li~~~~vvlfmK-Gtp~~P~CgFS~ 93 (118)
.|.-.++.++++++.++|..... |+-..+. ..+ .++++.+.+.+-+....|+| |+ |........-=.
T Consensus 103 ~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~---------~~~-~~~~i~~~~~~~~~~g~Iil-~Hd~~~~~~t~~~l~ 171 (191)
T TIGR02764 103 PPSGAFNKAVLKAAESLGYTVVHWSVDSRDW---------KNP-GVESIVDRVVKNTKPGDIIL-LHASDSAKQTVKALP 171 (191)
T ss_pred CCCcCCCHHHHHHHHHcCCeEEEecCCCCcc---------CCC-CHHHHHHHHHhcCCCCCEEE-EeCCCCcHhHHHHHH
Confidence 46656788999999999988665 6654321 112 24455556656667777777 55 211111011125
Q ss_pred HHHHHHHhcC-Cccee
Q 033504 94 LAVRVLGAYS-KFSYF 108 (118)
Q Consensus 94 ~~v~iL~~~~-~~~~~ 108 (118)
+++..|++.| +|.+.
T Consensus 172 ~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 172 TIIKKLKEKGYEFVTI 187 (191)
T ss_pred HHHHHHHHCCCEEEEH
Confidence 5667777777 66554
No 105
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=8.7 Score=31.33 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCCcc-CCCCCcccccccCC
Q 033504 23 RIVSGSLYHNGMKYST-DVPNDPDTHEDFRP 52 (118)
Q Consensus 23 ~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ 52 (118)
..+-.||++++|+|.. ||..|...|+.|+.
T Consensus 151 ~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~ 181 (281)
T KOG2824|consen 151 NAVRAILESFRVKVDERDVSMDSEFREELQE 181 (281)
T ss_pred HHHHHHHHhCceEEEEecccccHHHHHHHHH
Confidence 4677899999999999 99999876665543
No 106
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=62.37 E-value=11 Score=22.59 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.6
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.|.|+++.++.-.|+..| .|+..+|
T Consensus 6 ~~~~~~~~~v~~~l~~~~~~~~~~~i 31 (73)
T cd03056 6 FPLSGNCYKVRLLLALLGIPYEWVEV 31 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEe
Confidence 467899999999999999 9987765
No 107
>PF03323 GerA: Bacillus/Clostridium GerA spore germination protein; InterPro: IPR004995 Dormant Bacillus subtilis spores germinate in the presence of particular nutrients called germinants. The spores are thought to recognise germinants through receptor proteins encoded by the gerA family of operons, which includes gerA, gerB, and gerK. The GerA proteins are predicted to be membrane associated.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=61.67 E-value=17 Score=31.29 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=49.4
Q ss_pred ceeeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCC--cccCCCh-hhHHHHHHHHhhcCCeee
Q 033504 3 RSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPT--SKVDASG-LSLKEVVEQDVKENPVML 78 (118)
Q Consensus 3 ~~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~y--s~wpT~p-~~l~~~Ik~li~~~~vvl 78 (118)
.-++++||||..+. ++++-+++-=-+... .|++...+.+.+... |-.|+.- .+--+++-.-+-+.+|++
T Consensus 169 T~Vai~Yi~~ia~~-------~~v~~v~~rl~~i~~d~i~~~~~lee~i~~~~~s~FP~~~~TERPD~~~~~L~eGrv~i 241 (470)
T PF03323_consen 169 TKVAILYIEGIADP-------EIVQEVKQRLESIKIDGILDSGYLEELIEDNPYSPFPQVQYTERPDRAAASLLEGRVAI 241 (470)
T ss_pred ceEEEEEecCCCCH-------HHHHHHHHHHhcCCcceecChhHHHHHhcCCCCCccCCCCccCCHHHHHHHHhCCcEEE
Confidence 45789999999764 355555553334455 676666667766543 3334321 123356666677789999
Q ss_pred eecCCCCC
Q 033504 79 YMKGVPEF 86 (118)
Q Consensus 79 fmKGtp~~ 86 (118)
++-|+|..
T Consensus 242 lvDgsP~~ 249 (470)
T PF03323_consen 242 LVDGSPFA 249 (470)
T ss_pred EECCCCeE
Confidence 99999864
No 108
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.16 E-value=9.6 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=23.9
Q ss_pred CCcchHHHHHHHHhcC-Ccceeehhhhh
Q 033504 88 QCGFSSLAVRVLGAYS-KFSYFCSFSII 114 (118)
Q Consensus 88 ~CgFS~~~v~iL~~~~-~~~~~dv~~~~ 114 (118)
-|+-...+++-|+..+ +|+++||.+-|
T Consensus 11 ~Cpdca~a~eyl~rl~v~yd~VeIt~Sm 38 (85)
T COG4545 11 LCPDCAPAVEYLERLNVDYDFVEITESM 38 (85)
T ss_pred cCcchHHHHHHHHHcCCCceeeehhhhh
Confidence 4888899999999999 99999997654
No 109
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=59.59 E-value=10 Score=23.00 Aligned_cols=26 Identities=4% Similarity=-0.158 Sum_probs=22.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.+.|.|++++--+|...|++|+. .+-
T Consensus 6 ~~~~p~~~rvr~~L~~~gl~~~~~~~~ 32 (71)
T cd03037 6 YEHCPFCVKARMIAGLKNIPVEQIILQ 32 (71)
T ss_pred cCCCcHhHHHHHHHHHcCCCeEEEECC
Confidence 46799999999999999999987 543
No 110
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=58.62 E-value=38 Score=23.24 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=51.4
Q ss_pred eecCCCCCCCCchHH-HHHHHHHcCCCCcc--CCCCCcccccccCCCcccCCCh-------------hhHHHHHHHHhhc
Q 033504 10 FKGIASYPSARSSRI-VSGSLYHNGMKYST--DVPNDPDTHEDFRPTSKVDASG-------------LSLKEVVEQDVKE 73 (118)
Q Consensus 10 mKG~~~~P~CgfS~~-~v~~l~~~~~~~~~--dVl~d~d~r~dlK~ys~wpT~p-------------~~l~~~Ik~li~~ 73 (118)
++-.|..-.-||++. +-..|.+.|+.|.. ++-...+.|..++.-.+|+.+- .+..+.+.+++..
T Consensus 20 VR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg~~~~~r~~~~~~~~~~~f~~~Y~~~l~~~~~~~~~l~~L~~~~~~ 99 (122)
T PF04343_consen 20 VRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELGPSRELRKWYHEDPDWDEFFERYRAELESNPEFQEGLERLAELARE 99 (122)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhcCcccchhhhcccccHHHHHHHHHHHHcccHhHHHHHHHHHHHHcC
Confidence 477777778899994 57888899999988 7555667888887554564321 1233455555666
Q ss_pred CCeeeeecCCCCCCCC
Q 033504 74 NPVMLYMKGVPEFPQC 89 (118)
Q Consensus 74 ~~vvlfmKGtp~~P~C 89 (118)
. +..|-....--.|
T Consensus 100 ~--v~LlC~e~dp~~C 113 (122)
T PF04343_consen 100 G--VALLCAEKDPERC 113 (122)
T ss_pred C--eEEEEEecChhcC
Confidence 5 6667766555455
No 111
>PF13728 TraF: F plasmid transfer operon protein
Probab=58.58 E-value=9.6 Score=29.30 Aligned_cols=38 Identities=11% Similarity=0.426 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Cc
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KF 105 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~ 105 (118)
..+.|+++-++..+++|++| .|+|+.+...||+... +|
T Consensus 111 ~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~y 149 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKY 149 (215)
T ss_pred HHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHh
Confidence 35678899999999999999 5999999988888777 55
No 112
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=58.47 E-value=10 Score=30.24 Aligned_cols=39 Identities=13% Similarity=0.356 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccc
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFS 106 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~ 106 (118)
-.+.|+++-+...+++|++| .|+++.++..+|+... +|+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~yg 180 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYG 180 (256)
T ss_pred HHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhC
Confidence 45678899999999999998 5999999999997666 544
No 113
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=58.28 E-value=13 Score=22.22 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
+.|.+|.++.-+|...|++|+. .+
T Consensus 7 ~~~~~~~~~~~~l~~~gi~~~~~~~ 31 (73)
T cd03042 7 FRSSASYRVRIALNLKGLDYEYVPV 31 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEe
Confidence 4567788999999999999887 44
No 114
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=57.90 E-value=13 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHcCCCCcc
Q 033504 17 PSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
|.|.+|+++.-+|...|++|..
T Consensus 8 ~~s~~s~~v~~~l~~~~i~~~~ 29 (76)
T cd03053 8 AMSTCVRRVLLCLEEKGVDYEL 29 (76)
T ss_pred CCChhHHHHHHHHHHcCCCcEE
Confidence 6678899999999999999887
No 115
>PRK14812 hypothetical protein; Provisional
Probab=57.46 E-value=9.1 Score=27.31 Aligned_cols=18 Identities=39% Similarity=0.324 Sum_probs=16.1
Q ss_pred CCCchH-HHHHHHHHcCCC
Q 033504 18 SARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 18 ~CgfS~-~~v~~l~~~~~~ 35 (118)
+||.|| .++..|...|++
T Consensus 1 ~cGSSREhA~wAL~~~Gi~ 19 (119)
T PRK14812 1 MAGSSREHAAWALADYGFK 19 (119)
T ss_pred CCCCcHHHHHHHHHHcCCC
Confidence 699999 679999999986
No 116
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=54.93 E-value=8.9 Score=30.28 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=31.9
Q ss_pred eeecCCCCC----CCCchHHHHHHHHHcCCCCcc---CCCCCcccccccCCCcccCC
Q 033504 9 IFKGIASYP----SARSSRIVSGSLYHNGMKYST---DVPNDPDTHEDFRPTSKVDA 58 (118)
Q Consensus 9 fmKG~~~~P----~CgfS~~~v~~l~~~~~~~~~---dVl~d~d~r~dlK~ys~wpT 58 (118)
|.|.++..| -|.||+++.-+|.+.|++|+. |....++-...+.|....|+
T Consensus 59 ~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPv 115 (265)
T PLN02817 59 CVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPV 115 (265)
T ss_pred HHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCE
Confidence 445555444 499999999999999999986 33332222233444544454
No 117
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=53.59 E-value=16 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 86 FPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 86 ~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.+.|.|+.++.-+|...| .|+..++
T Consensus 24 ~~~sp~~~kv~~~L~~~gl~~~~~~v 49 (89)
T cd03055 24 MRFCPYAQRARLVLAAKNIPHEVINI 49 (89)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEEe
Confidence 567999999999999999 9987765
No 118
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=52.65 E-value=12 Score=31.51 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=26.9
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeehh
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv~ 111 (118)
+|++|- .|.|.+.+++.++|+++| .|..+||-
T Consensus 3 ~V~vys-----~~~Cp~C~~aK~~L~~~gi~~~~idi~ 35 (410)
T PRK12759 3 EVRIYT-----KTNCPFCDLAKSWFGANDIPFTQISLD 35 (410)
T ss_pred cEEEEe-----CCCCHHHHHHHHHHHHCCCCeEEEECC
Confidence 355554 478999999999999999 99999984
No 119
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=52.02 E-value=16 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.365 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccc
Q 033504 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFS 106 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~ 106 (118)
.+.|+++-+...++.|++| .|+++.+...+|+... +|+
T Consensus 135 ~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg 173 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYG 173 (248)
T ss_pred HHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhC
Confidence 5678899999999999998 5999999999998877 544
No 120
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=51.62 E-value=15 Score=22.31 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPN 42 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~ 42 (118)
.-|+|++++.-.|...|++|+. ++-.
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~ 40 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSN 40 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCC
Confidence 4699999999999999999998 6643
No 121
>PRK09979 putative rho operon leader peptide; Provisional
Probab=51.18 E-value=6.1 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=16.2
Q ss_pred eecCCCCCCCCchHHHHHHHHH
Q 033504 10 FKGIASYPSARSSRIVSGSLYH 31 (118)
Q Consensus 10 mKG~~~~P~CgfS~~~v~~l~~ 31 (118)
+-|+.-.|.|+||..-..+-++
T Consensus 6 isgsslnpscrfssayspvtrq 27 (33)
T PRK09979 6 ISGSSLNPSCRFSSAYSPVTRQ 27 (33)
T ss_pred ccCCcCCcccccccccChHhhh
Confidence 4688899999999865554443
No 122
>PF05122 SpdB: Mobile element transfer protein; InterPro: IPR007806 This family is found in proteins involved in transferring a group of integrating conjugative DNA elements, such as pSAM2 from Streptomyces ambofaciens during mating []. Their precise role is not known.
Probab=50.60 E-value=6.6 Score=24.26 Aligned_cols=10 Identities=50% Similarity=1.036 Sum_probs=8.0
Q ss_pred CCCCCcchHH
Q 033504 85 EFPQCGFSSL 94 (118)
Q Consensus 85 ~~P~CgFS~~ 94 (118)
+.|.||||..
T Consensus 25 ta~~Cg~Sad 34 (53)
T PF05122_consen 25 TAPRCGFSAD 34 (53)
T ss_pred cCCCCCcccc
Confidence 5799999863
No 123
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=50.31 E-value=48 Score=29.43 Aligned_cols=69 Identities=13% Similarity=0.276 Sum_probs=48.5
Q ss_pred CCcc-CCCC--CcccccccCC-CcccCCChh--hHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcCCccee
Q 033504 35 KYST-DVPN--DPDTHEDFRP-TSKVDASGL--SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYSKFSYF 108 (118)
Q Consensus 35 ~~~~-dVl~--d~d~r~dlK~-ys~wpT~p~--~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~~~~~~ 108 (118)
+..+ |+.+ ++++|+.+.- |-..|.... .+...+++.+++.+|++|. |.|-+.+-+.++|+ |.-.
T Consensus 286 d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~------sT~~~vk~~~~lL~----~~dl 355 (543)
T KOG0342|consen 286 DPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFF------STCMSVKFHAELLN----YIDL 355 (543)
T ss_pred CceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEe------chhhHHHHHHHHHh----hcCC
Confidence 4445 5553 6668888854 666654321 3567899999999999997 56999999999998 3344
Q ss_pred ehhhh
Q 033504 109 CSFSI 113 (118)
Q Consensus 109 dv~~~ 113 (118)
+|++|
T Consensus 356 pv~ei 360 (543)
T KOG0342|consen 356 PVLEI 360 (543)
T ss_pred chhhh
Confidence 55554
No 124
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=50.26 E-value=18 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
+-||+++++.-+|...|++|+. .|.
T Consensus 8 ~~~~~~~~v~~~L~~~~i~~e~~~v~ 33 (73)
T cd03076 8 PVRGRAEAIRLLLADQGISWEEERVT 33 (73)
T ss_pred CCcchHHHHHHHHHHcCCCCEEEEec
Confidence 4589999999999999999987 553
No 125
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=50.16 E-value=27 Score=20.64 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=24.5
Q ss_pred EeeecCCCCCCCCchHHHHHHHHHcCCCCcc
Q 033504 8 LIFKGIASYPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 8 lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
+-+.|......+||.+++.++|.+++++...
T Consensus 3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~ 33 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDL 33 (62)
T ss_pred EEEeccccCcccCHHHHHHHHHHHcCCeEEE
Confidence 3456666667789999999999999998654
No 126
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=50.07 E-value=20 Score=22.31 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.0
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
.+.|.+|+++.=+|...|++|+. ++
T Consensus 6 ~~~s~~s~rv~~~L~e~gl~~e~~~v 31 (73)
T cd03052 6 WTQSFSSQKVRLVIAEKGLRCEEYDV 31 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCCEEEEe
Confidence 46788899998899999999987 55
No 127
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=49.81 E-value=27 Score=28.48 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Cc
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KF 105 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~ 105 (118)
+.+.|+++.+.-++.+.+|+++ +|.|.+.++.|.+.| ++
T Consensus 167 ~le~i~~i~~~~~vPVivK~~g----~g~~~~~a~~L~~aGvd~ 206 (333)
T TIGR02151 167 WLEKIAEICSQLSVPVIVKEVG----FGISKEVAKLLADAGVSA 206 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEecC----CCCCHHHHHHHHHcCCCE
Confidence 4467888888778888899765 578999999999999 53
No 128
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=49.66 E-value=20 Score=22.10 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.5
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.|.|++|+++.=+|...|++|+. .|-
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~v~ 32 (75)
T cd03044 6 YPGNPRSLKILAAAKYNGLDVEIVDFQ 32 (75)
T ss_pred CCCCccHHHHHHHHHHcCCceEEEecc
Confidence 46788999999999999999887 444
No 129
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=14 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.080 Sum_probs=23.3
Q ss_pred CCCchHHHHHHHHHcCCCCcc-CCCCC
Q 033504 18 SARSSRIVSGSLYHNGMKYST-DVPND 43 (118)
Q Consensus 18 ~CgfS~~~v~~l~~~~~~~~~-dVl~d 43 (118)
-|+-++.+++-|..++++|.+ +|.+.
T Consensus 11 ~Cpdca~a~eyl~rl~v~yd~VeIt~S 37 (85)
T COG4545 11 LCPDCAPAVEYLERLNVDYDFVEITES 37 (85)
T ss_pred cCcchHHHHHHHHHcCCCceeeehhhh
Confidence 488889999999999999999 99864
No 130
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=49.41 E-value=22 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=24.0
Q ss_pred hHHH-HHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC
Q 033504 62 SLKE-VVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS 103 (118)
Q Consensus 62 ~l~~-~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~ 103 (118)
++.+ ..+++.+..++++|. ..|-|+..+.+-.+|++..
T Consensus 10 ~~~~~~~~~l~~~~~vvv~f----~a~wC~~C~~~~~~l~~la 48 (113)
T cd02975 10 ALKEEFFKEMKNPVDLVVFS----SKEGCQYCEVTKQLLEELS 48 (113)
T ss_pred HHHHHHHHHhCCCeEEEEEe----CCCCCCChHHHHHHHHHHH
Confidence 3444 334566666677764 2467888887777776555
No 131
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=49.25 E-value=15 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHH-----cCCCCcc-CCCCCccccccc
Q 033504 17 PSARSSRIVSGSLYH-----NGMKYST-DVPNDPDTHEDF 50 (118)
Q Consensus 17 P~CgfS~~~v~~l~~-----~~~~~~~-dVl~d~d~r~dl 50 (118)
|.|+.++++.+.+.+ .++.|.. |+..+.++...+
T Consensus 20 ~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 59 (93)
T cd02947 20 PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEY 59 (93)
T ss_pred CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhc
Confidence 467777777777766 5566666 776655554444
No 132
>PHA02125 thioredoxin-like protein
Probab=48.92 E-value=12 Score=23.41 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=14.7
Q ss_pred CCCCCchHHHHHHHHHcC
Q 033504 16 YPSARSSRIVSGSLYHNG 33 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~ 33 (118)
.|.||.++++..+|.+..
T Consensus 7 a~wC~~Ck~~~~~l~~~~ 24 (75)
T PHA02125 7 AEWCANCKMVKPMLANVE 24 (75)
T ss_pred CCCCHhHHHHHHHHHHHh
Confidence 588999999999997543
No 133
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=48.07 E-value=16 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.6
Q ss_pred cCCeeeeecCCCCCCCCcchHHHHHHHHhcC
Q 033504 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS 103 (118)
Q Consensus 73 ~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~ 103 (118)
.-+||.++.||-++||+.. +-..+|.+.|
T Consensus 108 ~~pvVa~v~GT~~dpq~~~--~~~~~L~~~G 136 (153)
T PF00549_consen 108 KKPVVARVCGTNADPQGRM--GQAGALEDAG 136 (153)
T ss_dssp -SEEEEEEESTTCHTTSCH--HHHHHHHCTT
T ss_pred CCcEEEEeeeecCCCCCcH--HHHHHHHhCC
Confidence 4489999999999999987 6677888887
No 134
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=45.88 E-value=24 Score=21.61 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=18.9
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
|-+++++++.-.|...|++|+. .+
T Consensus 7 ~~s~~~~~v~~~l~~~g~~~~~~~v 31 (76)
T cd03050 7 LMSQPSRAVYIFLKLNKIPFEECPI 31 (76)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEe
Confidence 4556788888889999999987 44
No 135
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=45.45 E-value=23 Score=21.47 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
+.|++|.++.=+|...|++|+. .+
T Consensus 7 ~~~~~~~~v~~~l~~~gi~~e~~~~ 31 (72)
T cd03039 7 NIRGRGEPIRLLLADAGVEYEDVRI 31 (72)
T ss_pred cCcchHHHHHHHHHHCCCCcEEEEe
Confidence 5678899999999999999987 54
No 136
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.37 E-value=20 Score=23.59 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=25.8
Q ss_pred ecCCCCCCCCcchHHHHHHHHhcC-Ccce----eehhhhhcc
Q 033504 80 MKGVPEFPQCGFSSLAVRVLGAYS-KFSY----FCSFSIILH 116 (118)
Q Consensus 80 mKGtp~~P~CgFS~~~v~iL~~~~-~~~~----~dv~~~~~~ 116 (118)
++-.--...-||-++++++|.++| .|++ -|-++++++
T Consensus 6 i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PSGID~~Siii~ 47 (76)
T cd04911 6 ISKYLMNREVGFGRKLLSILEDNGISYEHMPSGIDDISIIIR 47 (76)
T ss_pred hhHhhccchhcHHHHHHHHHHHcCCCEeeecCCCccEEEEEE
Confidence 334444566799999999999999 8764 344555443
No 137
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=45.18 E-value=40 Score=21.40 Aligned_cols=34 Identities=6% Similarity=-0.143 Sum_probs=28.6
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
+.++.+.+....+..||-+++.++|.++|++...
T Consensus 1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~ 34 (73)
T cd04934 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDL 34 (73)
T ss_pred CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEE
Confidence 3566778888889999999999999999987554
No 138
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=44.90 E-value=38 Score=26.76 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=28.2
Q ss_pred CCCchHHHHHHHHHcCCCCcc---CCCCCcccccccCCCcc
Q 033504 18 SARSSRIVSGSLYHNGMKYST---DVPNDPDTHEDFRPTSK 55 (118)
Q Consensus 18 ~CgfS~~~v~~l~~~~~~~~~---dVl~d~d~r~dlK~ys~ 55 (118)
-|.|+.++...|...+++|.. |+..-|+.-.++-|-.+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~ 60 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGK 60 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCC
Confidence 499999999999999998765 77766665544444433
No 139
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=44.47 E-value=87 Score=26.91 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=63.7
Q ss_pred eeeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCCh---hhHHHHHHHHh-----hcC
Q 033504 4 SLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG---LSLKEVVEQDV-----KEN 74 (118)
Q Consensus 4 ~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p---~~l~~~Ik~li-----~~~ 74 (118)
-+..+.+.|.+..++=||.+++..+|..+++.+.. -...++.. +.-+-.+...+ ..+++.+.+.. ..+
T Consensus 306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~---i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~ 382 (447)
T COG0527 306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS---ISFTVPESDAPRALRALLEEKLELLAEVEVEEG 382 (447)
T ss_pred CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe---EEEEEchhhHHHHHHHHHHHHhhhcceEEeeCC
Confidence 35677899999999999999999999999998644 22222221 22222222222 12222232221 222
Q ss_pred CeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccce
Q 033504 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSY 107 (118)
Q Consensus 75 ~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~ 107 (118)
=-++=+=|.--.-.+|..+++.+.|.+.+ .+..
T Consensus 383 ~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~ 416 (447)
T COG0527 383 LALVSIVGAGMRSNPGVAARIFQALAEENINIIM 416 (447)
T ss_pred eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEE
Confidence 23445678778888999999999999998 5543
No 140
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=44.40 E-value=20 Score=26.22 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=21.4
Q ss_pred CCcchHHHHHHHHhcC-Ccceeehhh
Q 033504 88 QCGFSSLAVRVLGAYS-KFSYFCSFS 112 (118)
Q Consensus 88 ~CgFS~~~v~iL~~~~-~~~~~dv~~ 112 (118)
-|.+.+++.++|++++ +|...||..
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~ 40 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSM 40 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCC
Confidence 3667799999999999 999999853
No 141
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=44.39 E-value=52 Score=26.09 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=47.7
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCC-ChhhHHHHHHHHhhcCCeeeeecCCCCCCCCcchHH
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDA-SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT-~p~~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~ 94 (118)
|.=.++.++++++.++|..... +|-.. +|.. .+..+.+++.+-+....|+| |+-+.. ....=.+
T Consensus 183 P~G~~n~~~~~~l~~~G~~~v~Wsvd~~-----------Dw~~~~~~~i~~~v~~~~~~G~IIL-mHd~~~--T~~aL~~ 248 (268)
T TIGR02873 183 PSGSFNDNVVQIAADLQMGTIMWTVDTI-----------DWKNPSPSVMVNRVLSKIHPGAMVL-MHPTAS--STEGLEE 248 (268)
T ss_pred CCCCCCHHHHHHHHHCCCeEEEeccCCC-----------CCCCCCHHHHHHHHHhcCCCCcEEE-EcCCcc--HHHHHHH
Confidence 5545678999999999987655 65322 2211 24455566655566666765 665432 3444566
Q ss_pred HHHHHHhcC-Cccee
Q 033504 95 AVRVLGAYS-KFSYF 108 (118)
Q Consensus 95 ~v~iL~~~~-~~~~~ 108 (118)
++..|++.| +|.+.
T Consensus 249 iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 249 MITIIKEKGYKIGTI 263 (268)
T ss_pred HHHHHHHCCCEEEeH
Confidence 777777777 76554
No 142
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=42.52 E-value=74 Score=19.81 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.2
Q ss_pred cCCCC-CCCCchHHHHHHHHHcCCCCcc
Q 033504 12 GIASY-PSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 12 G~~~~-P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
|.... +-|.|++++.-+|...|++|+.
T Consensus 8 ~~~~~~~~Sp~~~kv~~~L~~~~i~~~~ 35 (84)
T cd03038 8 GKDPVRAFSPNVWKTRLALNHKGLEYKT 35 (84)
T ss_pred CCCCCCCcCChhHHHHHHHHhCCCCCeE
Confidence 44444 5699999999999999999987
No 143
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=41.73 E-value=19 Score=26.93 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcCCcceeehhhh
Q 033504 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYSKFSYFCSFSI 113 (118)
Q Consensus 65 ~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~~~~~~dv~~~ 113 (118)
+.|++++++..|---+| .++-+|+...|..++|||+++
T Consensus 113 ~ai~~iL~~p~V~~~~K-----------~~i~~i~~~Kgei~FYDVy~l 150 (155)
T PF10777_consen 113 QAIDKILQSPQVPDEIK-----------QGIQRIISTKGEISFYDVYSL 150 (155)
T ss_pred HHHHHHHcCCCCCHHHH-----------HHHHHHHHhCCceeEEEeEEe
Confidence 35666777766554333 477788888889999999975
No 144
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=41.29 E-value=30 Score=27.05 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred eeEeeecC---CCCCCCCchHHHHHHHHHcCCCCcc---CCCCCcccccccCCCcccCC
Q 033504 6 SNLIFKGI---ASYPSARSSRIVSGSLYHNGMKYST---DVPNDPDTHEDFRPTSKVDA 58 (118)
Q Consensus 6 ~~lfmKG~---~~~P~CgfS~~~v~~l~~~~~~~~~---dVl~d~d~r~dlK~ys~wpT 58 (118)
+-||+|-. .+-+-|.|++++.=+|...|++|+. |....++..-.+.|....|+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPv 61 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPF 61 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCE
Confidence 34677743 3347799999999999999999987 44432222223445555554
No 145
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=40.72 E-value=13 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=18.9
Q ss_pred CCchHHHHHHHHHcCCCCcc-CC
Q 033504 19 ARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 19 CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
|.|++|+.=+|...|++|+. -+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v 24 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVV 24 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEE
T ss_pred chHhHHHHHHHHHhCCCCEEEEE
Confidence 89999999999999999987 44
No 146
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=40.70 E-value=85 Score=23.18 Aligned_cols=42 Identities=7% Similarity=0.161 Sum_probs=38.0
Q ss_pred hHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC
Q 033504 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS 103 (118)
Q Consensus 62 ~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~ 103 (118)
+..++|.+.+++++.++++.|--.-.=.|+...+++++++++
T Consensus 71 ~~~~~ir~~le~~d~~~i~~slgGGTGsG~~~~i~~~~~~~~ 112 (192)
T smart00864 71 ESLDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYG 112 (192)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccccHHHHHHHHHHHcC
Confidence 345788899999999999999999999999999999999887
No 147
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.40 E-value=59 Score=20.63 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=25.9
Q ss_pred eeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc
Q 033504 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
+++-+.+.......||-+++.++|.+++++...
T Consensus 2 ~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDm 34 (75)
T cd04935 2 RLVSMETLGMWQQVGFLADVFAPFKKHGVSVDL 34 (75)
T ss_pred EEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEE
Confidence 455567776667789999999999999987544
No 148
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=38.90 E-value=1.6e+02 Score=24.76 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCC---C---cc-CCCCCcccccccCCCcccCC-----------ChhhHHHHHHHHhhcCCeeeeecCCC
Q 033504 23 RIVSGSLYHNGMK---Y---ST-DVPNDPDTHEDFRPTSKVDA-----------SGLSLKEVVEQDVKENPVMLYMKGVP 84 (118)
Q Consensus 23 ~~~v~~l~~~~~~---~---~~-dVl~d~d~r~dlK~ys~wpT-----------~p~~l~~~Ik~li~~~~vvlfmKGtp 84 (118)
.+++++..+.|.+ | .+ |.+..+.-...++-...|-. .|.+.+..+++...+..++.|--
T Consensus 33 ~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~SS--- 109 (347)
T COG2089 33 KELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRGIIFFSS--- 109 (347)
T ss_pred HHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEEec---
Confidence 4678888888863 2 33 66664433444443344532 34466778889999988887643
Q ss_pred CCCCCcchHHHHHHHHhcC----Ccceeehh
Q 033504 85 EFPQCGFSSLAVRVLGAYS----KFSYFCSF 111 (118)
Q Consensus 85 ~~P~CgFS~~~v~iL~~~~----~~~~~dv~ 111 (118)
-|+.+.+++|++.+ +..++++.
T Consensus 110 -----Pfd~~svd~l~~~~~~ayKIaS~E~~ 135 (347)
T COG2089 110 -----PFDLTAVDLLESLNPPAYKIASGEIN 135 (347)
T ss_pred -----CCCHHHHHHHHhcCCCeEEecCcccc
Confidence 48999999999998 55566653
No 149
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=38.46 E-value=49 Score=27.26 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Cc
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KF 105 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~ 105 (118)
+.+.|+++.+.-++.+.+|++. +|.|.+.++.|.+.| ++
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g----~g~s~~~a~~l~~~Gvd~ 213 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVG----FGISKETAKRLADAGVKA 213 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCC----CCCcHHHHHHHHHcCCCE
Confidence 4477888888777888899875 689999999999998 64
No 150
>TIGR02750 TraN_Ftype type-F conjugative transfer system mating-pair stabilization protein TraN. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilization (adhesin) component of the F-type conjugative plamid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.
Probab=38.21 E-value=19 Score=32.18 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=11.4
Q ss_pred cccccCCCcccCCChhhHHHHHHH
Q 033504 46 THEDFRPTSKVDASGLSLKEVVEQ 69 (118)
Q Consensus 46 ~r~dlK~ys~wpT~p~~l~~~Ik~ 69 (118)
..++++...+.|. +.++.++|++
T Consensus 548 ~~~~l~~~~~~P~-~~~i~~ri~~ 570 (572)
T TIGR02750 548 FYEDLHNNQKLPD-NDEITQRLQS 570 (572)
T ss_pred HHHHHHhhccCCC-HHHHHHHHHh
Confidence 3444444445555 3355566654
No 151
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=37.64 E-value=54 Score=26.62 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Cc
Q 033504 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KF 105 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~ 105 (118)
.+.|+.+++.-++.+.+|+++ +|.|.+.++.|.+.| ++
T Consensus 167 ~~~i~~l~~~~~vPVivK~~g----~g~s~~~a~~l~~~Gvd~ 205 (326)
T cd02811 167 LERIEELVKALSVPVIVKEVG----FGISRETAKRLADAGVKA 205 (326)
T ss_pred HHHHHHHHHhcCCCEEEEecC----CCCCHHHHHHHHHcCCCE
Confidence 368888888878888899866 589999999999999 53
No 152
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=36.01 E-value=65 Score=21.06 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC---Ccceeehhh
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS---KFSYFCSFS 112 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~---~~~~~dv~~ 112 (118)
+.++++++-+.-.|.+|.- |.=|.|.-..++++-|.+.. +|..+|+-+
T Consensus 3 ~~~~~~~l~~pv~i~~F~~--~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~ 53 (89)
T cd03026 3 LLEQIRRLNGPINFETYVS--LSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL 53 (89)
T ss_pred HHHHHHhcCCCEEEEEEEC--CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh
Confidence 4567777666667888875 45555555555555554433 666666543
No 153
>PRK10456 arginine succinyltransferase; Provisional
Probab=35.96 E-value=25 Score=29.44 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred hHHHHHHHHhcC-Ccc-eeehhh
Q 033504 92 SSLAVRVLGAYS-KFS-YFCSFS 112 (118)
Q Consensus 92 S~~~v~iL~~~~-~~~-~~dv~~ 112 (118)
++.+.++|++.| .|. ++||||
T Consensus 232 t~pA~~lLe~EGF~~~~yVDIFD 254 (344)
T PRK10456 232 TAPARAVLEKEGFRYRNYIDIFD 254 (344)
T ss_pred CHHHHHHHHHcCCccCCceeccC
Confidence 788999999999 887 999998
No 154
>PRK06756 flavodoxin; Provisional
Probab=35.91 E-value=1.1e+02 Score=21.33 Aligned_cols=84 Identities=5% Similarity=0.067 Sum_probs=48.6
Q ss_pred CCchHHHHHHHHH----cCCCCcc-CCCCCcccccccCCCccc----CC-----ChhhHHHHHHHH----hhcCCeeeee
Q 033504 19 ARSSRIVSGSLYH----NGMKYST-DVPNDPDTHEDFRPTSKV----DA-----SGLSLKEVVEQD----VKENPVMLYM 80 (118)
Q Consensus 19 CgfS~~~v~~l~~----~~~~~~~-dVl~d~d~r~dlK~ys~w----pT-----~p~~l~~~Ik~l----i~~~~vvlfm 80 (118)
=|-|+++++.+.+ .|++... |+.+.+. ..++..+..+ || .|.++.+.++++ .++.++.+|=
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~-~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fg 90 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMDSPE-ASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFG 90 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhccCC-HHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 3667777665544 4555444 5544322 2233333211 33 343466666654 3456778877
Q ss_pred cCCCCCC-CCcchHHHHHHHHhcC
Q 033504 81 KGVPEFP-QCGFSSLAVRVLGAYS 103 (118)
Q Consensus 81 KGtp~~P-~CgFS~~~v~iL~~~~ 103 (118)
-|+...+ .|+.-+++.++|.+.|
T Consensus 91 t~~~~y~~~~~a~~~l~~~l~~~g 114 (148)
T PRK06756 91 SCDSAYPKYGVAVDILIEKLQERG 114 (148)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCC
Confidence 7665544 5888889999999888
No 155
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=35.73 E-value=26 Score=29.25 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCeeeeec--------CCCCCCCCcchHHHHHHHHhcC-Ccc-eeehhh
Q 033504 64 KEVVEQDVKENPVMLYMK--------GVPEFPQCGFSSLAVRVLGAYS-KFS-YFCSFS 112 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmK--------Gtp~~P~CgFS~~~v~iL~~~~-~~~-~~dv~~ 112 (118)
++.|.+|.=.+||.+=+= |-+.. -++.+.++|++.| .|. ++||||
T Consensus 198 k~FIaeLMP~~PIYv~LLp~eAq~vIG~vH~----~t~pA~~lLe~EGF~~~~yVDIFD 252 (336)
T TIGR03244 198 KAFIAELMPKFPIYVDLLSAEAQDVIGRVHE----DTRPALAMLESEGFRYQGYVDIFD 252 (336)
T ss_pred chhHHHHCCCCCcccccCCHHHHHHhCCcCC----CCHHHHHHHHHcCCccCCceeccC
Confidence 456666666666655331 11111 1678999999999 887 999998
No 156
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=35.58 E-value=20 Score=22.10 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.9
Q ss_pred eeeecCCCCCCCCcchH
Q 033504 77 MLYMKGVPEFPQCGFSS 93 (118)
Q Consensus 77 vlfmKGtp~~P~CgFS~ 93 (118)
.-.|||.|..|++++|=
T Consensus 33 ~~~mr~d~tN~y~RpSi 49 (52)
T PF08358_consen 33 SDDMRGDPTNPYSRPSI 49 (52)
T ss_pred chhhCCCcCcccCCccc
Confidence 34589999999999873
No 157
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=35.58 E-value=37 Score=21.83 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=12.1
Q ss_pred CCCCchHHHHHHHHH
Q 033504 17 PSARSSRIVSGSLYH 31 (118)
Q Consensus 17 P~CgfS~~~v~~l~~ 31 (118)
|.|+.++.+.+.+.+
T Consensus 23 ~~C~~C~~~~~~l~~ 37 (97)
T cd02949 23 PTCGPCRTLKPILNK 37 (97)
T ss_pred CCChhHHHHHHHHHH
Confidence 889988888777765
No 158
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=35.14 E-value=57 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.2
Q ss_pred eeeeecCC---CCCCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 76 VMLYMKGV---PEFPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 76 vvlfmKGt---p~~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
+-||+|-. ..-+-|.|+.++.=+|...| .|+...|
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~v 41 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTV 41 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEE
Confidence 45677753 23378999999999999999 8887665
No 159
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=35.14 E-value=73 Score=21.38 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=36.2
Q ss_pred EeeecCCCCCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCChhhHHHHHHHHhhcCCeeee
Q 033504 8 LIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLY 79 (118)
Q Consensus 8 lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~Ik~li~~~~vvlf 79 (118)
+++-|. |-||=|.-+-.+...+|.++-. |.+..++...........+..-..+.+.+.++..+..+++-
T Consensus 2 I~i~G~---~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vid 71 (147)
T cd02020 2 IAIDGP---AGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLE 71 (147)
T ss_pred EEEECC---CCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEE
Confidence 345555 5677687788888888998776 74443332211111111111112344455566666666653
No 160
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=35.07 E-value=25 Score=29.36 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=19.2
Q ss_pred hHHHHHHHHhcC-Ccc-eeehhh
Q 033504 92 SSLAVRVLGAYS-KFS-YFCSFS 112 (118)
Q Consensus 92 S~~~v~iL~~~~-~~~-~~dv~~ 112 (118)
++.+.++|.+.| .|. ++||||
T Consensus 230 t~pA~~lLe~EGF~~~~yVDIFD 252 (335)
T TIGR03243 230 TRPARAMLESEGFRYQGYVDIFD 252 (335)
T ss_pred CHHHHHHHHHcCCCcCCcccccC
Confidence 788999999999 887 999998
No 161
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=34.68 E-value=25 Score=29.32 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=19.2
Q ss_pred hHHHHHHHHhcC-Ccc-eeehhh
Q 033504 92 SSLAVRVLGAYS-KFS-YFCSFS 112 (118)
Q Consensus 92 S~~~v~iL~~~~-~~~-~~dv~~ 112 (118)
++.+.++|.+.| .|. ++||||
T Consensus 231 t~pA~~lLe~EGF~~~~yVDIFD 253 (336)
T TIGR03245 231 ARDNCQILNREGFEMDRYIDIFD 253 (336)
T ss_pred CHHHHHHHHHcCCccCCcccccC
Confidence 788999999999 887 999998
No 162
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=34.58 E-value=30 Score=26.46 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=17.0
Q ss_pred CCCCCchH-HHHHHHHHcCCC
Q 033504 16 YPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 16 ~P~CgfS~-~~v~~l~~~~~~ 35 (118)
.=-||.|| .++..|+..|++
T Consensus 78 NFGcGSSREhA~~aL~~~Gi~ 98 (188)
T TIGR00171 78 NFGCGSSREHAPWALDDYGFK 98 (188)
T ss_pred cccCCCcHHHHHHHHHHcCCC
Confidence 34699999 779999999986
No 163
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.55 E-value=95 Score=18.17 Aligned_cols=27 Identities=7% Similarity=-0.041 Sum_probs=22.6
Q ss_pred eecCCCCCCCCchHHHHHHHHHcCCCC
Q 033504 10 FKGIASYPSARSSRIVSGSLYHNGMKY 36 (118)
Q Consensus 10 mKG~~~~P~CgfS~~~v~~l~~~~~~~ 36 (118)
+-|..-...+|+.+++.+.|...|++.
T Consensus 6 vvg~~~~~~~~~~~~if~~L~~~~I~v 32 (66)
T cd04919 6 LVGKHMKNMIGIAGRMFTTLADHRINI 32 (66)
T ss_pred EECCCCCCCcCHHHHHHHHHHHCCCCE
Confidence 447777677899999999999999875
No 164
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=34.55 E-value=1e+02 Score=25.02 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=49.2
Q ss_pred eeecCCCCCCCCchHHHHHHHHHcCCCCccCCCCCcccccccCCCcccCCChh------hHHHHHHHHhhcCCeee----
Q 033504 9 IFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGL------SLKEVVEQDVKENPVML---- 78 (118)
Q Consensus 9 fmKG~~~~P~CgfS~~~v~~l~~~~~~~~~dVl~d~d~r~dlK~ys~wpT~p~------~l~~~Ik~li~~~~vvl---- 78 (118)
.+-|-|-.-+-.=++++.+.|.+.|-++..-|.+|+. -+++.-++.-+.+. .+...++.-++.+++|+
T Consensus 5 vi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des--lg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~Dsl 82 (281)
T KOG3062|consen 5 VICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES--LGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVDSL 82 (281)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh--cCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEecc
Confidence 3467776666333445566677766665336666655 45555455544432 34566777889999998
Q ss_pred -eecCCCCCCCC
Q 033504 79 -YMKGVPEFPQC 89 (118)
Q Consensus 79 -fmKGtp~~P~C 89 (118)
+|||-.=+=.|
T Consensus 83 NyIKGfRYeLyC 94 (281)
T KOG3062|consen 83 NYIKGFRYELYC 94 (281)
T ss_pred cccccceeeeee
Confidence 68887666555
No 165
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=34.45 E-value=59 Score=19.55 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=19.4
Q ss_pred CCCCCchHHHHHHHHH--cCCCCcc-CC
Q 033504 16 YPSARSSRIVSGSLYH--NGMKYST-DV 40 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~--~~~~~~~-dV 40 (118)
.+-|.+|.++.-+|.. .|++|+. .+
T Consensus 6 ~~~s~~~~~~~~~l~~~~~~i~~~~~~~ 33 (73)
T cd03049 6 SPTSPYVRKVRVAAHETGLGDDVELVLV 33 (73)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCcEEEEc
Confidence 3567788988888888 7888876 54
No 166
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=34.24 E-value=43 Score=20.32 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHH----cC--CCCcc-CCCCCcc
Q 033504 17 PSARSSRIVSGSLYH----NG--MKYST-DVPNDPD 45 (118)
Q Consensus 17 P~CgfS~~~v~~l~~----~~--~~~~~-dVl~d~d 45 (118)
|.|++++++.+.|.+ ++ +.+.. |+-++++
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~ 44 (82)
T TIGR00411 9 PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ 44 (82)
T ss_pred CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH
Confidence 889999988888764 33 34444 6655544
No 167
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.15 E-value=1.9e+02 Score=23.82 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=55.8
Q ss_pred CchHH-HHHHHHHcCCCCcc-CCCCCcccccccCCCccc-----------CCCh-h---hHHHHHHHHhhcCCeeeeecC
Q 033504 20 RSSRI-VSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV-----------DASG-L---SLKEVVEQDVKENPVMLYMKG 82 (118)
Q Consensus 20 gfS~~-~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~w-----------pT~p-~---~l~~~Ik~li~~~~vvlfmKG 82 (118)
||+.. .++.|+..|++... .|-. ++|..+|-...- |+.. + ++.++++.++.++++++ +-|
T Consensus 61 g~tg~~~~~~l~~~gi~~~fv~v~g--~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~Vv-lsG 137 (310)
T COG1105 61 GFTGEFFVALLKDEGIPDAFVEVKG--DTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVV-LSG 137 (310)
T ss_pred CccHHHHHHHHHhcCCCceEEEccC--CCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEE-EeC
Confidence 55553 58889988887665 5554 566666543321 2222 2 34567778888999866 555
Q ss_pred C-CCCCCCcchHHHHHHHHhcCCcceeeh
Q 033504 83 V-PEFPQCGFSSLAVRVLGAYSKFSYFCS 110 (118)
Q Consensus 83 t-p~~P~CgFS~~~v~iL~~~~~~~~~dv 110 (118)
+ |.-=-=.+=.++++++++.|.+=.+|.
T Consensus 138 SlP~g~~~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 138 SLPPGVPPDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEEC
Confidence 3 333334566789999999986666665
No 168
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=34.06 E-value=51 Score=24.73 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccc
Q 033504 69 QDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFS 106 (118)
Q Consensus 69 ~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~ 106 (118)
.+-++-.+++|. +++.|-|+-.+++..+|.+.. +|.
T Consensus 16 ~~~~~~~i~~f~--~~~a~wC~~C~~~~p~l~~la~~~~ 52 (215)
T TIGR02187 16 ELKNPVEIVVFT--DNDKEGCQYCKETEQLLEELSEVSP 52 (215)
T ss_pred hcCCCeEEEEEc--CCCCCCCCchHHHHHHHHHHHhhCC
Confidence 333333444444 478899999999999888775 543
No 169
>PRK10387 glutaredoxin 2; Provisional
Probab=33.98 E-value=41 Score=24.35 Aligned_cols=26 Identities=4% Similarity=-0.119 Sum_probs=22.3
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.+.|.|+.++.=+|...|++|+. ++.
T Consensus 6 ~~~sp~~~kv~~~L~~~gi~y~~~~~~ 32 (210)
T PRK10387 6 YDHCPFCVKARMIFGLKNIPVELIVLA 32 (210)
T ss_pred CCCCchHHHHHHHHHHcCCCeEEEEcC
Confidence 46688899999999999999998 774
No 170
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=33.72 E-value=31 Score=27.25 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.4
Q ss_pred CCcchHHHHHHHHhcC-Ccceeeh
Q 033504 88 QCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 88 ~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.|.||.++.-.|.+.| .|+...|
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~v 95 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLV 95 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEe
Confidence 4999999999999999 8886443
No 171
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=32.77 E-value=1.6e+02 Score=21.12 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=21.4
Q ss_pred eEeeecCCCCCCCCchHHHHHHH----HHcCCCCcc-CC
Q 033504 7 NLIFKGIASYPSARSSRIVSGSL----YHNGMKYST-DV 40 (118)
Q Consensus 7 ~lfmKG~~~~P~CgfS~~~v~~l----~~~~~~~~~-dV 40 (118)
++.+-|+|+.. ++|+++++.+ .+.|.++.. |+
T Consensus 2 il~I~gS~r~~--S~t~~l~~~~~~~l~~~~~~~~~idl 38 (171)
T TIGR03567 2 VLTLSGSPSTP--SRSSALLRHVREALQEQGVEVDHLSV 38 (171)
T ss_pred EEEEECCCCCC--ChHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 67789999843 8888775554 445665555 54
No 172
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=32.48 E-value=1.6e+02 Score=22.55 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=48.8
Q ss_pred eeeeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc--CCCCCcccccccCCCcccCCChh-hHHHHHHHHhhcCCeeeee
Q 033504 4 SLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST--DVPNDPDTHEDFRPTSKVDASGL-SLKEVVEQDVKENPVMLYM 80 (118)
Q Consensus 4 ~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~--dVl~d~d~r~dlK~ys~wpT~p~-~l~~~Ik~li~~~~vvlfm 80 (118)
..-++.+-||| .||=|.-.-++....|.+|.. |+-.+.+..+++-..-+-+-+.+ .+.+.++-.+-+...++=-
T Consensus 6 ~~PNILvtGTP---G~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDy 82 (176)
T KOG3347|consen 6 ERPNILVTGTP---GTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDY 82 (176)
T ss_pred cCCCEEEeCCC---CCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEee
Confidence 34467788985 566677777777778888776 77777788887765555554443 3556666444445555545
Q ss_pred cC
Q 033504 81 KG 82 (118)
Q Consensus 81 KG 82 (118)
+|
T Consensus 83 Hg 84 (176)
T KOG3347|consen 83 HG 84 (176)
T ss_pred cc
Confidence 55
No 173
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=32.30 E-value=79 Score=19.33 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.6
Q ss_pred CCCchHHHHHHHHHcCCCCcc-CC
Q 033504 18 SARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 18 ~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
-|.|+.++.-.|...|++|+. .+
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~ 39 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFG 39 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeec
Confidence 378899999999999999887 44
No 174
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.22 E-value=94 Score=20.14 Aligned_cols=33 Identities=9% Similarity=-0.098 Sum_probs=24.9
Q ss_pred eeEeeecCCCCCCCCchHHHHHHHHHcCCCCcc
Q 033504 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
+++-+++......+||.+++.+.|.++|++...
T Consensus 2 ~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDm 34 (78)
T cd04933 2 TMLDITSTRMLGQYGFLAKVFSIFETLGISVDV 34 (78)
T ss_pred EEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEE
Confidence 344556665556689999999999999987544
No 175
>PF13246 Hydrolase_like2: Putative hydrolase of sodium-potassium ATPase alpha subunit
Probab=32.00 E-value=19 Score=23.72 Aligned_cols=12 Identities=50% Similarity=0.991 Sum_probs=10.0
Q ss_pred CCeeeeecCCCC
Q 033504 74 NPVMLYMKGVPE 85 (118)
Q Consensus 74 ~~vvlfmKGtp~ 85 (118)
..+++|+||.|+
T Consensus 71 ~~~~~~~KGA~e 82 (91)
T PF13246_consen 71 GKYILYVKGAPE 82 (91)
T ss_pred CEEEEEcCCChH
Confidence 368889999886
No 176
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.81 E-value=31 Score=24.30 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=32.2
Q ss_pred eeeEeeecCCCCCCCCch-HHHHHHHHHcCCCCcc-CCCCCccccc
Q 033504 5 LSNLIFKGIASYPSARSS-RIVSGSLYHNGMKYST-DVPNDPDTHE 48 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS-~~~v~~l~~~~~~~~~-dVl~d~d~r~ 48 (118)
++.+|.+-++-.+.-+.- .+++.+|..+.+.|.. ||-++++.|+
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~ 48 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQ 48 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHH
Confidence 455677776666665543 3789999999999999 9988776543
No 177
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=31.18 E-value=48 Score=20.08 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=18.9
Q ss_pred CCCCchHHHHHHHHHcCCCCcc
Q 033504 17 PSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
+.|.+|+++.-+|...|++|+.
T Consensus 7 ~~sp~~~~v~~~l~~~gl~~~~ 28 (74)
T cd03058 7 WASPFVLRVRIALALKGVPYEY 28 (74)
T ss_pred CCCchHHHHHHHHHHcCCCCEE
Confidence 4577899999899999999876
No 178
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.79 E-value=1.2e+02 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.1
Q ss_pred cCCCCCCCCchHHHHHHHHHcCCCCccCCCCCcccccc---cCCCcccCC
Q 033504 12 GIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHED---FRPTSKVDA 58 (118)
Q Consensus 12 G~~~~P~CgfS~~~v~~l~~~~~~~~~dVl~d~d~r~d---lK~ys~wpT 58 (118)
+.|+.|+ =+.+.|+|+..|+= -+||.++.| +..-+-||.
T Consensus 124 ~lpe~~K---ikdaYqmLKkqgIi-----k~DP~lp~d~~~~p~ppP~pk 165 (594)
T KOG1086|consen 124 SLPEEPK---IKDAYQMLKKQGII-----KSDPKLPVDETPVPAPPPRPK 165 (594)
T ss_pred cCcccch---HHHHHHHHHhcCcc-----cCCCCCCCCCccCCCCCCCCC
Confidence 5677777 67899999988863 345555555 333344544
No 179
>PLN02378 glutathione S-transferase DHAR1
Probab=30.43 E-value=67 Score=23.83 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc---CCCCCcccccccCCCcccCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST---DVPNDPDTHEDFRPTSKVDA 58 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~---dVl~d~d~r~dlK~ys~wpT 58 (118)
.+-|.|++++.=+|...|++|+. |+..-++-.-.+.|....|+
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPv 62 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPV 62 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCE
Confidence 46699999999999999999886 55433322223445555554
No 180
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=30.42 E-value=23 Score=28.81 Aligned_cols=41 Identities=15% Similarity=0.445 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccceeeh
Q 033504 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSYFCS 110 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~~dv 110 (118)
.+.+++..+..|..+.. |.|++|.+++++|.++| +|...|=
T Consensus 154 ~~~~~~~FG~~P~G~W~------pE~a~~~~l~~~l~~~Gi~~~i~d~ 195 (360)
T PF03065_consen 154 REYFKKHFGRRPRGFWL------PECAYSPGLEEILAEAGIRYTILDG 195 (360)
T ss_dssp HHHHHHHHSS--SBEE-------GGG-B-TTHHHHHHHTT--EEEEEC
T ss_pred HHHHHHHhCCCCCceEC------cccccCHHHHHHHHHcCCEEEEECc
Confidence 35667778877777654 77999999999999999 9887774
No 181
>PF07056 DUF1335: Protein of unknown function (DUF1335); InterPro: IPR009766 This family represents a conserved region approximately 130 residues long within a number of proteins of unknown function that seem to be specific to the white spot syndrome virus (WSSV).
Probab=30.13 E-value=49 Score=24.08 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHhhcCCeeeeecCCCCCCCCcchHH--------HHHHHHhcC-Ccceeehhhh
Q 033504 69 QDVKENPVMLYMKGVPEFPQCGFSSL--------AVRVLGAYS-KFSYFCSFSI 113 (118)
Q Consensus 69 ~li~~~~vvlfmKGtp~~P~CgFS~~--------~v~iL~~~~-~~~~~dv~~~ 113 (118)
+-++.++.++ -+|-----||||.+ +-++|.++| .|+.+.|-||
T Consensus 20 a~~~~~~~~I--vttDfLiGlG~s~~~v~~~L~~me~~l~~~g~~~~~v~v~dI 71 (131)
T PF07056_consen 20 AAVKKCDYMI--VTTDFLIGLGFSPRNVTKKLKSMEQNLVKHGGKYSMVPVVDI 71 (131)
T ss_pred hhhcccceEE--EehhheeecCCChHHHHHHHHHHHHHHHHccCCcceeeHHHH
Confidence 3345555543 34444445999864 457889999 9999998876
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=29.70 E-value=52 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.1
Q ss_pred CCCCchHHHHHHHHHcCC----CCcc-CCCCCcccc
Q 033504 17 PSARSSRIVSGSLYHNGM----KYST-DVPNDPDTH 47 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~----~~~~-dVl~d~d~r 47 (118)
|.|+....+.++|.+... .... ||.+|++..
T Consensus 8 ~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~ 43 (81)
T PF05768_consen 8 PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELF 43 (81)
T ss_dssp SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHH
T ss_pred CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHH
Confidence 789999999999997553 3455 999888743
No 183
>PF10825 DUF2752: Protein of unknown function (DUF2752); InterPro: IPR021215 This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.
Probab=29.66 E-value=37 Score=20.47 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.2
Q ss_pred ecCCCCCCCCchHHHHHHHH
Q 033504 11 KGIASYPSARSSRIVSGSLY 30 (118)
Q Consensus 11 KG~~~~P~CgfS~~~v~~l~ 30 (118)
-|.| =|-||-+|....+++
T Consensus 8 tG~~-CPgCG~tRa~~~ll~ 26 (52)
T PF10825_consen 8 TGIP-CPGCGMTRAFIALLH 26 (52)
T ss_pred hCCC-CCCCcHHHHHHHHHC
Confidence 3555 699999999988887
No 184
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=29.24 E-value=32 Score=28.75 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.2
Q ss_pred hHHHHHHHHhcC-Ccc-eeehhh
Q 033504 92 SSLAVRVLGAYS-KFS-YFCSFS 112 (118)
Q Consensus 92 S~~~v~iL~~~~-~~~-~~dv~~ 112 (118)
++-+.++|++.| .|. ++||||
T Consensus 234 t~pA~~lLe~EGF~~~~yVDIFD 256 (342)
T PF04958_consen 234 TRPALRLLESEGFRYDGYVDIFD 256 (342)
T ss_dssp GHHHHHHHHHHT-EEEEEE-TTT
T ss_pred cHHHHHHHHHcCCCcCCcccccC
Confidence 778999999999 887 999998
No 185
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=27.88 E-value=50 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=16.7
Q ss_pred CCCCCchH-HHHHHHHHcCCC
Q 033504 16 YPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 16 ~P~CgfS~-~~v~~l~~~~~~ 35 (118)
.=-||.|| .++..|...|++
T Consensus 26 nfG~GSSRE~A~~al~~~Gi~ 46 (91)
T cd01577 26 NFGCGSSREHAPWALKDAGIR 46 (91)
T ss_pred cccCCCcHHHHHHHHHHhCCC
Confidence 34599999 678899999986
No 186
>PRK10302 hypothetical protein; Provisional
Probab=27.74 E-value=1.7e+02 Score=23.54 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHh
Q 033504 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA 101 (118)
Q Consensus 64 ~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~ 101 (118)
-++|.+...+.++.+|++-+-+.--..--.++.++|++
T Consensus 217 a~~i~~w~~~~~~yvff~n~~~~~A~~nA~~l~~~l~~ 254 (272)
T PRK10302 217 LQKLPQWHQTTTPYLFIHTPDIAQAPELVQTLWPDLRK 254 (272)
T ss_pred HHHHHHHHhCCCEEEEEeCCchhhHHHHHHHHHHHHhh
Confidence 35666655567888888875443333333444455543
No 187
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=27.71 E-value=38 Score=17.86 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=18.9
Q ss_pred CCCCchHHHHHHHHH-----cCCCCcc-CCCCCcc
Q 033504 17 PSARSSRIVSGSLYH-----NGMKYST-DVPNDPD 45 (118)
Q Consensus 17 P~CgfS~~~v~~l~~-----~~~~~~~-dVl~d~d 45 (118)
..|+.+.++...+.+ .++.+.. |+..+++
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (69)
T cd01659 7 PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA 41 (69)
T ss_pred CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH
Confidence 458888888888884 3455555 6555543
No 188
>PRK09004 FMN-binding protein MioC; Provisional
Probab=27.19 E-value=1.5e+02 Score=21.02 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=28.2
Q ss_pred hhcCCeeeeecCCCCCCC-CcchHHHHHHHHhcC
Q 033504 71 VKENPVMLYMKGVPEFPQ-CGFSSLAVRVLGAYS 103 (118)
Q Consensus 71 i~~~~vvlfmKGtp~~P~-CgFS~~~v~iL~~~~ 103 (118)
+++-++-+|==|..+.|. |++.+++-+.|.++|
T Consensus 80 l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lG 113 (146)
T PRK09004 80 LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKG 113 (146)
T ss_pred CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcC
Confidence 455688899888887666 999999999999999
No 189
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=26.63 E-value=77 Score=19.49 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHcCCCCcc
Q 033504 20 RSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 20 gfS~~~v~~l~~~~~~~~~ 38 (118)
.+|+++.-+|...|++|+.
T Consensus 10 ~~~~~v~~~l~~~gl~~~~ 28 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEI 28 (81)
T ss_pred CChHHHHHHHHHcCCCcEE
Confidence 5678898899999999886
No 190
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=26.37 E-value=1e+02 Score=21.48 Aligned_cols=28 Identities=29% Similarity=0.707 Sum_probs=18.6
Q ss_pred hhcCCeeeeecCCCCCCCCcchHHHHHHHHhc
Q 033504 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY 102 (118)
Q Consensus 71 i~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~ 102 (118)
=+..++++|=.. .+|+-|+.+.+-+++.
T Consensus 17 S~~~~~~iFKHS----t~C~IS~~a~~~~e~~ 44 (105)
T PF11009_consen 17 SKEKPVLIFKHS----TRCPISAMALREFEKF 44 (105)
T ss_dssp ---SEEEEEEE-----TT-HHHHHHHHHHHHH
T ss_pred cccCcEEEEEeC----CCChhhHHHHHHHHHH
Confidence 446778888777 6899999998877654
No 191
>PRK00957 methionine synthase; Provisional
Probab=26.25 E-value=3.2e+02 Score=21.52 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccC---------------CCcccCCChhhHHHHHHHHhhcCC---ee
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR---------------PTSKVDASGLSLKEVVEQDVKENP---VM 77 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK---------------~ys~wpT~p~~l~~~Ik~li~~~~---vv 77 (118)
.-||-...+.+.|.+.+++--+ |...+.+--..++ +.+.|-..++++.++|++..+.-+ ++
T Consensus 196 H~CG~~~~i~~~l~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ 275 (305)
T PRK00957 196 HVCGDVSNIIDDLLKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAENIL 275 (305)
T ss_pred EECCCcHHHHHHHHhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEE
Confidence 6799888888888888886444 5422211111111 112233345567777777665332 33
Q ss_pred eeecCCCCCCCCcc
Q 033504 78 LYMKGVPEFPQCGF 91 (118)
Q Consensus 78 lfmKGtp~~P~CgF 91 (118)
+ .|.|||
T Consensus 276 l-------sp~CGl 282 (305)
T PRK00957 276 I-------DPDCGM 282 (305)
T ss_pred E-------CCCcCC
Confidence 3 699999
No 192
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=26.11 E-value=1.3e+02 Score=20.70 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHhhcCCeeeeecCCCCCCCCcc-hHHHHHHHHhcC-Ccceeehh
Q 033504 66 VVEQDVKENPVMLYMKGVPEFPQCGF-SSLAVRVLGAYS-KFSYFCSF 111 (118)
Q Consensus 66 ~Ik~li~~~~vvlfmKGtp~~P~CgF-S~~~v~iL~~~~-~~~~~dv~ 111 (118)
.+++.+++++.++..=|.|.=|.|.. +..+-++.++.+ .+-++|+-
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 45566676665555556555555543 444445555544 57777774
No 193
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=25.78 E-value=78 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.8
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl 41 (118)
.|.|.+|.++.=+|...|++|+. .|-
T Consensus 16 ~~~s~~~~rv~~~L~e~gl~~e~~~v~ 42 (211)
T PRK09481 16 GPTDIYSHQVRIVLAEKGVSVEIEQVE 42 (211)
T ss_pred CCCChhHHHHHHHHHHCCCCCEEEeCC
Confidence 36788999999899999999988 553
No 194
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=25.60 E-value=54 Score=25.30 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.4
Q ss_pred CCCCchH-HHHHHHHHcCCC
Q 033504 17 PSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 17 P~CgfS~-~~v~~l~~~~~~ 35 (118)
=-||.|| .++..|...|++
T Consensus 77 FGcGSSRE~A~~al~~~Gi~ 96 (200)
T PRK01641 77 FGCGSSREHAPWALADYGFR 96 (200)
T ss_pred ccCCCcHHHHHHHHHHcCCC
Confidence 3599999 679999999986
No 195
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=25.57 E-value=1.4e+02 Score=18.51 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=22.2
Q ss_pred eecCCCCCCCCchHHHHHHHHHcCCCCcc
Q 033504 10 FKGIASYPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 10 mKG~~~~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
+.|......+|+.+++.+.|..++++...
T Consensus 6 i~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 6 IKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 44555555689999999999999987543
No 196
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=25.56 E-value=76 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.3
Q ss_pred ceeeeEeeecCCCCCCCCchHHHHHHHHHcCCCC
Q 033504 3 RSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKY 36 (118)
Q Consensus 3 ~~~~~lfmKG~~~~P~CgfS~~~v~~l~~~~~~~ 36 (118)
+.-+|+++.||-..||+.. .-..+|.+.|+..
T Consensus 108 ~~pvVa~v~GT~~dpq~~~--~~~~~L~~~G~~v 139 (153)
T PF00549_consen 108 KKPVVARVCGTNADPQGRM--GQAGALEDAGVIV 139 (153)
T ss_dssp -SEEEEEEESTTCHTTSCH--HHHHHHHCTTCSC
T ss_pred CCcEEEEeeeecCCCCCcH--HHHHHHHhCCCcc
Confidence 3568999999999999775 5677888888763
No 197
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=25.34 E-value=36 Score=24.89 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=29.5
Q ss_pred ecCCCCCCCCcc-hHHHHHHHHhcC--Ccceeehhhh
Q 033504 80 MKGVPEFPQCGF-SSLAVRVLGAYS--KFSYFCSFSI 113 (118)
Q Consensus 80 mKGtp~~P~CgF-S~~~v~iL~~~~--~~~~~dv~~~ 113 (118)
.||.|..|.-|| |..+|.=|.-.| ++-.+||-|+
T Consensus 54 ~kg~p~~v~iGyrsPk~vRglhPSG~~~VlV~Nv~dL 90 (133)
T COG1717 54 LKGKPPMVKIGYRSPKAVRGLHPSGYEEVLVHNVKDL 90 (133)
T ss_pred hcCCCCCcccCCCCcHhhcccCCCccceeeeecHHHH
Confidence 499999999999 899999999999 7778887654
No 198
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.58 E-value=2.3e+02 Score=21.45 Aligned_cols=84 Identities=8% Similarity=0.008 Sum_probs=44.1
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCChhhHHHHHHHHhhcCCeeeeecCCCCCCCCcchHH
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~ 94 (118)
.|.=.|+..+++++.++|.++.. ++-..+...+. -+ .+..+.+++-+-+....|+| |+..... .-.-=.+
T Consensus 135 ~P~G~~~~~~~~~l~~~Gy~~v~w~v~~~Dw~~~~------~~-~~~~~~~~v~~~~~~g~IiL-lHd~~~~-t~~aL~~ 205 (224)
T TIGR02884 135 PPRGVFSERTLAYTKELGYYTVFWSLAFKDWKVDE------QP-GWQYAYKQIMKKIHPGAILL-LHAVSKD-NAEALDK 205 (224)
T ss_pred CCCCCcCHHHHHHHHHcCCcEEeccccCcccCCCC------CC-CHHHHHHHHHhcCCCCcEEE-EECCCCC-HHHHHHH
Confidence 35544688999999999988765 65322111100 01 12233334433344445555 6754221 1223455
Q ss_pred HHHHHHhcC-Cccee
Q 033504 95 AVRVLGAYS-KFSYF 108 (118)
Q Consensus 95 ~v~iL~~~~-~~~~~ 108 (118)
+++.|++.| +|.+.
T Consensus 206 ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 206 IIKDLKEQGYTFKSL 220 (224)
T ss_pred HHHHHHHCCCEEEEh
Confidence 677777777 76554
No 199
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=23.99 E-value=52 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCCCCCchH-HHHHHHHHcCCC
Q 033504 15 SYPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 15 ~~P~CgfS~-~~v~~l~~~~~~ 35 (118)
+.=.||.|| .+.-.|...|++
T Consensus 70 ~NFGcGSSREHApwALk~~Gi~ 91 (191)
T COG0066 70 ENFGCGSSREHAPWALKDYGIR 91 (191)
T ss_pred CCCCCCccHHHHHHHHHHcCee
Confidence 345699999 789999999984
No 200
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.88 E-value=2.4e+02 Score=19.16 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=44.8
Q ss_pred cCCCCCCCCchHHHHHHHHHcCCCCcc-CCCC----CcccccccCCCcccC------CChhhHHHHHHHHh-hcCCeeee
Q 033504 12 GIASYPSARSSRIVSGSLYHNGMKYST-DVPN----DPDTHEDFRPTSKVD------ASGLSLKEVVEQDV-KENPVMLY 79 (118)
Q Consensus 12 G~~~~P~CgfS~~~v~~l~~~~~~~~~-dVl~----d~d~r~dlK~ys~wp------T~p~~l~~~Ik~li-~~~~vvlf 79 (118)
|-...|. .|++++++-|.+.|.+... |--. .......+..-..-+ +-|..+.+.++++. .+.+.++|
T Consensus 7 GaS~~~~-~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 7 GASDNPG-KFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp T--SSTT-SHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE
T ss_pred cccCCCC-ChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 5444444 5789999999998854222 2222 112333333210110 11223455566554 35788888
Q ss_pred ecCCCCCCCCcchHHHHHHHHhcC-Cc
Q 033504 80 MKGVPEFPQCGFSSLAVRVLGAYS-KF 105 (118)
Q Consensus 80 mKGtp~~P~CgFS~~~v~iL~~~~-~~ 105 (118)
.-| ..+.++++.++++| .+
T Consensus 86 ~~g-------~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 86 QPG-------AESEELIEAAREAGIRV 105 (116)
T ss_dssp -TT-------S--HHHHHHHHHTT-EE
T ss_pred Ecc-------hHHHHHHHHHHHcCCEE
Confidence 888 78999999999988 53
No 201
>PRK09739 hypothetical protein; Provisional
Probab=23.70 E-value=2.7e+02 Score=20.37 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=23.1
Q ss_pred eeeEeeecCCCCCCCCchHHHHHHH----HHcCCCCcc-CCCC
Q 033504 5 LSNLIFKGIASYPSARSSRIVSGSL----YHNGMKYST-DVPN 42 (118)
Q Consensus 5 ~~~lfmKG~~~~P~CgfS~~~v~~l----~~~~~~~~~-dVl~ 42 (118)
..++.+.|+|+.. ++|+++.+.+ .+.|...+. |+.+
T Consensus 4 mkiliI~~sp~~~--s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 4 MRIYLVWAHPRHD--SLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred ceEEEEEcCCCCC--CcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 4578899999863 7787665554 445554544 5443
No 202
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.65 E-value=36 Score=26.48 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC
Q 033504 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS 103 (118)
Q Consensus 60 p~~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~ 103 (118)
|+.+.+.|+.+|+..-|++.||- |.=+++.++|+.+-
T Consensus 102 ~~~lhe~i~~lik~~aV~VCm~~-------g~Fk~A~eiLkr~~ 138 (200)
T cd00280 102 PETLHEEIRKLIKEQAVAVCMEN-------GEFKKAEEVLKRLF 138 (200)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc-------CchHHHHHHHHHHh
Confidence 34688999999999999999998 77788888888764
No 203
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=23.30 E-value=64 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.6
Q ss_pred CCCCCchH-HHHHHHHHcCCC
Q 033504 16 YPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 16 ~P~CgfS~-~~v~~l~~~~~~ 35 (118)
.=-||.|| .++..|...|++
T Consensus 56 NFG~GSSRE~A~~al~~~Gi~ 76 (156)
T TIGR02084 56 NFGCGSSREHAPIAIKASGIS 76 (156)
T ss_pred cccCCCcHHHHHHHHHHhCCC
Confidence 34599999 678889999986
No 204
>PRK06703 flavodoxin; Provisional
Probab=23.29 E-value=2e+02 Score=19.99 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=24.6
Q ss_pred hhcCCeeeeecCCCCCC-CCcchHHHHHHHHhcC
Q 033504 71 VKENPVMLYMKGVPEFP-QCGFSSLAVRVLGAYS 103 (118)
Q Consensus 71 i~~~~vvlfmKGtp~~P-~CgFS~~~v~iL~~~~ 103 (118)
.++.++.+|=-|....+ .|+..+.+-++|++.|
T Consensus 80 l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G 113 (151)
T PRK06703 80 LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERG 113 (151)
T ss_pred CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCC
Confidence 34557888866655444 4888889999999988
No 205
>PRK10357 putative glutathione S-transferase; Provisional
Probab=23.21 E-value=1.2e+02 Score=21.89 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCCCchHHHHHHHHHcCCCCcc-CCCC--CcccccccCCCcccCCC
Q 033504 17 PSARSSRIVSGSLYHNGMKYST-DVPN--DPDTHEDFRPTSKVDAS 59 (118)
Q Consensus 17 P~CgfS~~~v~~l~~~~~~~~~-dVl~--d~d~r~dlK~ys~wpT~ 59 (118)
+.|.+|+++.=+|...|++|+. ++-. .+.--..+.|....|+.
T Consensus 7 ~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L 52 (202)
T PRK10357 7 YTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPAL 52 (202)
T ss_pred CCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeE
Confidence 5678899998889999999987 4432 22111123455555654
No 206
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=23.17 E-value=65 Score=23.44 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.7
Q ss_pred CCCCCchH-HHHHHHHHcCCC
Q 033504 16 YPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 16 ~P~CgfS~-~~v~~l~~~~~~ 35 (118)
.=-||.|| .++..|+..|++
T Consensus 54 nFG~GSSRE~A~~al~~~Gi~ 74 (129)
T cd01674 54 NFGTGSSREQAATALLAKGIP 74 (129)
T ss_pred ccCCCCcHHHHHHHHHHcCcc
Confidence 34699999 778889999986
No 207
>PRK00170 azoreductase; Reviewed
Probab=22.77 E-value=2.7e+02 Score=20.03 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=22.0
Q ss_pred eEeeecCCCCCCCCchHHHH----HHHHHc--CCCCcc-CCC
Q 033504 7 NLIFKGIASYPSARSSRIVS----GSLYHN--GMKYST-DVP 41 (118)
Q Consensus 7 ~lfmKG~~~~P~CgfS~~~v----~~l~~~--~~~~~~-dVl 41 (118)
++.+-|+|+... ++|++++ +.|.+. |.+.+. |+-
T Consensus 4 il~i~gSpr~~~-s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 4 VLVIKSSILGDY-SQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred EEEEecCCCCCC-cHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 567789997644 7888655 445554 555555 654
No 208
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=22.67 E-value=70 Score=19.95 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=9.9
Q ss_pred CchH-HHHHHHHHcCCC
Q 033504 20 RSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 20 gfS~-~~v~~l~~~~~~ 35 (118)
||.+ +++++|+..|++
T Consensus 20 GF~~dkVvevlrrlgik 36 (55)
T PF09288_consen 20 GFERDKVVEVLRRLGIK 36 (55)
T ss_dssp T--HHHHHHHHHHS--S
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 7876 789999988876
No 209
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=22.64 E-value=83 Score=22.29 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=18.2
Q ss_pred CCCCCCchH-HHHHHHHHcCCC
Q 033504 15 SYPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 15 ~~P~CgfS~-~~v~~l~~~~~~ 35 (118)
...-||.|| .++..|...|++
T Consensus 56 ~nFG~GSSRE~A~~al~~~Gi~ 77 (121)
T cd01579 56 ENYGQGSSREHAALAPMYLGVR 77 (121)
T ss_pred CcCCCCccHHHHHHHHHHHCCC
Confidence 567899999 678889999986
No 210
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=22.07 E-value=36 Score=24.26 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcCCcceeeh
Q 033504 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYSKFSYFCS 110 (118)
Q Consensus 62 ~l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~~~~~~dv 110 (118)
++.+.+...+...|+++|-.|+-+ |-+=++...++.-+-|..|++
T Consensus 81 ~lL~~l~~~~~~~plv~FyPG~y~----g~~l~lf~~~~~~nYYRAf~l 125 (126)
T PF08747_consen 81 ELLNNLQPKFGNVPLVVFYPGEYD----GNSLRLFGELDDDNYYRAFRL 125 (126)
T ss_pred HHHHHHHHHhcCCeEEEECCceec----CceeEecCCCCCCCcceeeec
Confidence 466777788889999999999554 323333333333335556654
No 211
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=21.82 E-value=1.1e+02 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCeeeeecCCCCCCCCcchHHHHHHHHhcC
Q 033504 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS 103 (118)
Q Consensus 63 l~~~Ik~li~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~ 103 (118)
+...+-.+..+|.|++ |..|+.|.| +..++++|.+.|
T Consensus 135 ~~~~~~ALaaGN~Vi~--Kps~~~p~~--~~~l~~~~~~aG 171 (453)
T cd07115 135 AWKVAPALAAGNTVVL--KPAELTPLS--ALRIAELMAEAG 171 (453)
T ss_pred HHHHHHHHhcCCEEEE--ECCCCCcHH--HHHHHHHHHhcC
Confidence 3455678899999996 999999988 668999999987
No 212
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=21.00 E-value=1e+02 Score=20.18 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=22.5
Q ss_pred hcCCeeeeecCCCCCCCCcchHHHHHHHHhcC-Ccce
Q 033504 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS-KFSY 107 (118)
Q Consensus 72 ~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~-~~~~ 107 (118)
++..+++..- .|.|+.++++...|++.. +|..
T Consensus 17 ~g~~vlV~F~----a~WC~~C~~~~p~l~~la~~~~~ 49 (100)
T cd02999 17 REDYTAVLFY----ASWCPFSASFRPHFNALSSMFPQ 49 (100)
T ss_pred CCCEEEEEEE----CCCCHHHHhHhHHHHHHHHHhcc
Confidence 4555666555 488999999888887776 5543
No 213
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=20.87 E-value=76 Score=23.42 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=16.5
Q ss_pred CCCCCchH-HHHHHHHHcCCC
Q 033504 16 YPSARSSR-IVSGSLYHNGMK 35 (118)
Q Consensus 16 ~P~CgfS~-~~v~~l~~~~~~ 35 (118)
.=-||.|| .++..|...|++
T Consensus 56 NFG~GSSRE~A~~al~~~Gi~ 76 (154)
T TIGR02087 56 NFGCGSSREQAALALKAAGIA 76 (154)
T ss_pred cccCCccHHHHHHHHHHhCCC
Confidence 34599999 678889999986
No 214
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.84 E-value=1.2e+02 Score=18.58 Aligned_cols=25 Identities=16% Similarity=-0.096 Sum_probs=20.6
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc-CC
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
.+.+.+|+++.=+|...|++|+. .+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v 32 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILV 32 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 45677899999999999999887 44
No 215
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=20.79 E-value=1.4e+02 Score=20.14 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=17.7
Q ss_pred hcCCeeeeecCCCCCCCCcchHHHHHHHHhcC
Q 033504 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYS 103 (118)
Q Consensus 72 ~~~~vvlfmKGtp~~P~CgFS~~~v~iL~~~~ 103 (118)
++..++++.-. |.|+-++.+-..|.+.-
T Consensus 21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la 48 (113)
T cd02989 21 SSERVVCHFYH----PEFFRCKIMDKHLEILA 48 (113)
T ss_pred CCCcEEEEEEC----CCCccHHHHHHHHHHHH
Confidence 34567766644 67777777666665544
No 216
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=20.71 E-value=97 Score=22.58 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=23.8
Q ss_pred eeEeeecCCCCCCCCchHHH----HHHHHHcC-CCCcc-CCCCC
Q 033504 6 SNLIFKGIASYPSARSSRIV----SGSLYHNG-MKYST-DVPND 43 (118)
Q Consensus 6 ~~lfmKG~~~~P~CgfS~~~----v~~l~~~~-~~~~~-dVl~d 43 (118)
.+|.+-|+|+... ++|+++ ++-+.+.+ .+... |+-+.
T Consensus 2 kiLvI~asp~~~~-S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 2 KILVINASPRPEG-SFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEE--SSTTT-SHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred EEEEEEcCCCCcc-CHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 3678899998866 776644 56677777 55666 66653
No 217
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.49 E-value=2.1e+02 Score=20.91 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHcCCCCcc-CCCCCcccccccCCCcccCCChhhHHHHHHHHhhc
Q 033504 20 RSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKE 73 (118)
Q Consensus 20 gfS~~~v~~l~~~~~~~~~-dVl~d~d~r~dlK~ys~wpT~p~~l~~~Ik~li~~ 73 (118)
..|+.+--.|...|+..-. ||-.. |.|+.+|...| .++.++|+++..+
T Consensus 55 t~Sksi~mfL~mqgI~LleGDVwGH---RKDinEYy~i~---~~vi~~I~el~~e 103 (131)
T PF08004_consen 55 TLSKSIKMFLEMQGIELLEGDVWGH---RKDINEYYEIP---ESVIERIKELKSE 103 (131)
T ss_pred HHhHHHHHHHHhcCceeeccccccc---cCCCcccccCC---HHHHHHHHHHHHc
Confidence 4577777888889998666 77754 67787787665 3677788888765
No 218
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=20.48 E-value=1.4e+02 Score=17.97 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.3
Q ss_pred CCchHHHHHHHHHcCCCCcc-CC
Q 033504 19 ARSSRIVSGSLYHNGMKYST-DV 40 (118)
Q Consensus 19 CgfS~~~v~~l~~~~~~~~~-dV 40 (118)
..+++++.-.|...|++|+. ++
T Consensus 9 s~~~~~v~~~L~~~~l~~~~~~~ 31 (73)
T cd03047 9 SINVQKVLWLLDELGLPYERIDA 31 (73)
T ss_pred CcchHHHHHHHHHcCCCCEEEEe
Confidence 34578888899999999886 44
No 219
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=20.12 E-value=29 Score=28.26 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=16.4
Q ss_pred CCCCCchHHHHHHHHHcCCCCcc
Q 033504 16 YPSARSSRIVSGSLYHNGMKYST 38 (118)
Q Consensus 16 ~P~CgfS~~~v~~l~~~~~~~~~ 38 (118)
-|.|+++..++++|.++|++|.-
T Consensus 170 ~pE~a~~~~l~~~l~~~Gi~~~i 192 (360)
T PF03065_consen 170 LPECAYSPGLEEILAEAGIRYTI 192 (360)
T ss_dssp -GGG-B-TTHHHHHHHTT--EEE
T ss_pred CcccccCHHHHHHHHHcCCEEEE
Confidence 37899999999999999998764
Done!