Query 033505
Match_columns 118
No_of_seqs 129 out of 904
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_P 40S ribosomal protein S 100.0 6.6E-54 2.3E-58 318.2 8.7 115 1-118 28-142 (142)
2 3j20_T 30S ribosomal protein S 100.0 1.8E-54 6.2E-59 318.1 4.8 114 1-118 19-132 (132)
3 3iz6_R 40S ribosomal protein S 100.0 3.4E-57 1.2E-61 339.3 -12.7 118 1-118 37-154 (154)
4 2xzm_S RPS15E; ribosome, trans 100.0 4.6E-51 1.6E-55 303.6 7.0 112 1-112 33-144 (144)
5 3bbn_S Ribosomal protein S19; 100.0 5.3E-40 1.8E-44 228.7 5.9 86 18-107 1-89 (92)
6 3a1p_B 30S ribosomal protein S 100.0 1E-39 3.6E-44 227.7 5.1 84 18-105 1-87 (93)
7 3i1m_S 30S ribosomal protein S 100.0 9.4E-40 3.2E-44 227.5 4.8 82 18-103 1-85 (92)
8 3r8n_S 30S ribosomal protein S 100.0 4.5E-37 1.5E-41 208.8 3.9 75 20-98 1-78 (79)
9 3v2d_5 50S ribosomal protein L 55.7 4.9 0.00017 25.0 1.5 48 12-77 12-59 (60)
10 2zjr_Z 50S ribosomal protein L 36.6 7.9 0.00027 24.1 0.1 47 12-76 12-58 (60)
11 1pcf_A P15, transcriptional co 25.1 99 0.0034 19.3 3.9 33 63-98 9-41 (66)
No 1
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=100.00 E-value=6.6e-54 Score=318.23 Aligned_cols=115 Identities=69% Similarity=1.176 Sum_probs=102.7
Q ss_pred CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI 80 (118)
Q Consensus 1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I 80 (118)
||+|||++|+||||||+++||++.++..|++++|++++++++++++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus 28 ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~sR~s~IlP~mVG~ti~VyNGK~f~~V~I 107 (142)
T 3u5c_P 28 MSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEI 107 (142)
T ss_dssp TCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECCTTCBCCGGGTTCEEEEESSSSEEEEEC
T ss_pred CCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeeccCCEeChhHCCCEEEEEcCCeeEEEec
Confidence 89999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505 81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118 (118)
Q Consensus 81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk 118 (118)
+||||||||||||+||++++|++||+ +||+|||||
T Consensus 108 t~eMVGhkLGEFa~Trk~~~Hg~~gi---~SS~fiplK 142 (142)
T 3u5c_P 108 RPEMLGHYLGEFSITYTPVRHGRAGA---TTSRFIPLK 142 (142)
T ss_dssp CGGGTTSBGGGGSCCSCCCCCSCC--------------
T ss_pred ccCccceeeeeeeeEecccccCCCCc---cccccccCC
Confidence 99999999999999999999999999 999999997
No 2
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-54 Score=318.09 Aligned_cols=114 Identities=56% Similarity=0.901 Sum_probs=92.7
Q ss_pred CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI 80 (118)
Q Consensus 1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I 80 (118)
||+|||++|+||||||++.||++..+..|+++++++++.. ++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus 19 ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~ti~VyNGK~f~~V~I 94 (132)
T 3j20_T 19 MSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEI 94 (132)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTCEEEEECSSSEEEEEC
T ss_pred CCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCCcEEEEECCCeeeeeec
Confidence 6889999999999999999999878889999999987543 478999999999999999999999999999999999
Q ss_pred cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505 81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118 (118)
Q Consensus 81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk 118 (118)
+||||||||||||+||++++|++||+|||+||+|||||
T Consensus 95 t~eMVGhkLGEFa~Trk~~~H~~pGigAT~sS~fiplK 132 (132)
T 3j20_T 95 KPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132 (132)
T ss_dssp CGGGTTSBGGGTSCSSCCCCCC----------------
T ss_pred ccCccceeeeeeeeEeccCcCCCCCcCcccccccccCC
Confidence 99999999999999999999999999999999999997
No 3
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=100.00 E-value=3.4e-57 Score=339.34 Aligned_cols=118 Identities=93% Similarity=1.431 Sum_probs=88.2
Q ss_pred CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI 80 (118)
Q Consensus 1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I 80 (118)
||+|||++|+||||||+++||++.++..|++++|++++++++++++++|+||+|+|+|+|+|||++|+|||||+|++|+|
T Consensus 37 ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~I 116 (154)
T 3iz6_R 37 MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEI 116 (154)
T ss_dssp ---------------------CCCCSCCCCSSCCSCCCSHHHHHTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESS
T ss_pred CCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcccCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEe
Confidence 78999999999999999999999999999999999988776777788999999999999999999999999999999999
Q ss_pred cCCcceeeeeeeeeeeecccCCCCCCCCCCCcCceecC
Q 033505 81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118 (118)
Q Consensus 81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss~fvplk 118 (118)
+|||||||||||++||++++|++||+|||+||+|||||
T Consensus 117 t~eMVGhkLGEFa~Trk~~~HgkpGiGAT~SS~FiPlK 154 (154)
T 3iz6_R 117 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154 (154)
T ss_dssp SSEEECCCCSSCCSSCGGGTTSSHHHHHTTCC------
T ss_pred ccCccceeeeeeeeeeccCcCCCCCCCcccccccccCC
Confidence 99999999999999999999999999999999999997
No 4
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=100.00 E-value=4.6e-51 Score=303.64 Aligned_cols=112 Identities=50% Similarity=0.963 Sum_probs=99.1
Q ss_pred CChHHHHHHhhHHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeee
Q 033505 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEI 80 (118)
Q Consensus 1 m~~~e~~~l~~ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I 80 (118)
|++|||++|+||||||++.|+....+..|+++++++++++++++++++|+||||+|+|+|+|||++|+|||||+|++|+|
T Consensus 33 m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKTwsR~stIlPemVG~ti~VyNGK~fvpV~I 112 (144)
T 2xzm_S 33 LISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEV 112 (144)
T ss_dssp SSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEECCTTCBCCGGGTTCEEEEECSSSEEEEEC
T ss_pred CCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEEeccCcCcCHhHCCcEEEEecCCeeeeeee
Confidence 78999999999999999999999878899999999998777778889999999999999999999999999999999999
Q ss_pred cCCcceeeeeeeeeeeecccCCCCCCCCCCCc
Q 033505 81 KPEMIGHYLAEFSISYKPVKHGRPGIGATHSS 112 (118)
Q Consensus 81 ~~eMIGhklGEF~~Trk~~~h~~~g~gat~ss 112 (118)
+||||||||||||+||++++|++||+|||+||
T Consensus 113 teeMVGHKLGEFa~TRk~~~H~~pGigat~s~ 144 (144)
T 2xzm_S 113 KFDMIGKYLAEFAMTYKPTTHGKTGAAGGKGK 144 (144)
T ss_dssp CGGGTTSBGGGGSCCSCCCCCCC---------
T ss_pred cccccceeeeceeeecccCccCCCCcCcccCC
Confidence 99999999999999999999999999999997
No 5
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5.3e-40 Score=228.75 Aligned_cols=86 Identities=31% Similarity=0.519 Sum_probs=76.1
Q ss_pred hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505 18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 94 (118)
Q Consensus 18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~ 94 (118)
|+||+||+|| .|+++++++++ +++ +++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~Kgpfv~~~Llkki~~~~~---~~~-~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~ 76 (92)
T 3bbn_S 1 MTRSLKKNPFVANHLLRKIEKLNK---KAE-KEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAP 76 (92)
T ss_dssp CCCSCSSCCCCCHHHHHHHHTTTT---TTC-CCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSC
T ss_pred CCCccccCcccCHHHHHHHHHHHh---cCC-CcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceee
Confidence 7899999999 46777765543 233 6899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCCCC
Q 033505 95 SYKPVKHGRPGIG 107 (118)
Q Consensus 95 Trk~~~h~~~g~g 107 (118)
||++++|++....
T Consensus 77 Trk~~~H~~~~~~ 89 (92)
T 3bbn_S 77 TLNFRGHAKNDNK 89 (92)
T ss_dssp SSCCSSSCCCCCC
T ss_pred eecccccCCCccc
Confidence 9999999876544
No 6
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Probab=100.00 E-value=1e-39 Score=227.65 Aligned_cols=84 Identities=36% Similarity=0.574 Sum_probs=68.6
Q ss_pred hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505 18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 94 (118)
Q Consensus 18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~ 94 (118)
|+||+||+|| .|+++++++++. + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~Kgpfv~~~Llkki~~~~~~---~-~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~ 76 (93)
T 3a1p_B 1 MPRSLKKGVFVDDHLLEKVLELNAK---G-EKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAP 76 (93)
T ss_dssp --------CCCCHHHHHHHHHHHHH---T-CCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCC
T ss_pred CCCccccCcccCHHHHHHHHHHHhc---C-CCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceee
Confidence 7899999999 588888877653 2 36899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCC
Q 033505 95 SYKPVKHGRPG 105 (118)
Q Consensus 95 Trk~~~h~~~g 105 (118)
||++++|++..
T Consensus 77 Trk~~~H~~~~ 87 (93)
T 3a1p_B 77 TRTYRGHGKEA 87 (93)
T ss_dssp CSCCCCTTGGG
T ss_pred eecccccCccc
Confidence 99999997643
No 7
>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...
Probab=100.00 E-value=9.4e-40 Score=227.49 Aligned_cols=82 Identities=39% Similarity=0.593 Sum_probs=70.5
Q ss_pred hhcCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeee
Q 033505 18 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 94 (118)
Q Consensus 18 m~Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~ 94 (118)
|+||+||+|| .|+++++++++. + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus 1 M~RS~~KGpfv~~~Llkki~k~~~~---~-~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~ 76 (92)
T 3i1m_S 1 MPRSLKKGPFIDLHLLKKVEKAVES---G-DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAP 76 (92)
T ss_dssp --CCCCSSCCCCHHHHHHHHHHHHT---C-CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSC
T ss_pred CCcccccCcCcCHHHHHHHHHHHhc---C-CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeee
Confidence 7899999999 678888877653 2 36899999999999999999999999999999999999999999999999
Q ss_pred eeecccCCC
Q 033505 95 SYKPVKHGR 103 (118)
Q Consensus 95 Trk~~~h~~ 103 (118)
||+++.|++
T Consensus 77 TRk~~~H~~ 85 (92)
T 3i1m_S 77 TRTYRGHAA 85 (92)
T ss_dssp CCCCC----
T ss_pred EecccccCc
Confidence 999999987
No 8
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_S 3fih_S* 3j18_S* 2wwl_S 3oar_S 3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S 4a2i_S 4gd1_S 4gd2_S 2gy9_S 2gyb_S
Probab=100.00 E-value=4.5e-37 Score=208.84 Aligned_cols=75 Identities=41% Similarity=0.629 Sum_probs=66.6
Q ss_pred cCCCCChh---hHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeeeeeecCCcceeeeeeeeeee
Q 033505 20 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY 96 (118)
Q Consensus 20 Rs~~k~~~---~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~Tr 96 (118)
||+||+|| .|+++++++++. + ++++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||
T Consensus 1 RS~~Kgpfv~~~Llkki~k~~~~---~-~~~~ikT~sR~stIlP~mVG~ti~VyNGk~f~~V~It~~MVGhkLGEFa~TR 76 (79)
T 3r8n_S 1 RSLKKGPFIDLHLLKKVEKAVES---G-DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTR 76 (79)
T ss_dssp CCCCSCCCCCHHHHHHHGGGTTS---C-CCSCEECCCTTSBCCSTTTTCCEEEECSSSEECCCCCTTCCSSBTTTTSCSS
T ss_pred CCcccCcCcCHHHHHHHHHHHhc---C-CCcceEEecCCCEECHHHCCCEEEEECCCeeEEEEeccCeeceEeeeeeeEe
Confidence 89999999 566666655432 2 4689999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 033505 97 KP 98 (118)
Q Consensus 97 k~ 98 (118)
++
T Consensus 77 ~~ 78 (79)
T 3r8n_S 77 TY 78 (79)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 9
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=55.69 E-value=4.9 Score=25.05 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceeee
Q 033505 12 ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQ 77 (118)
Q Consensus 12 ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~~ 77 (118)
|++|+.+.|+-|+-.. +..+.--.=....+|-.|-..-+-|+|++-+.
T Consensus 12 Sksr~~~RRsh~kl~~------------------p~l~~c~~cGe~~~~H~vc~~CG~Y~gr~V~~ 59 (60)
T 3v2d_5 12 SKARRDARRSHHALTP------------------PTLVPCPECKAMKPPHTVCPECGYYAGRKVLE 59 (60)
T ss_dssp CHHHHHHHGGGCCCCC------------------CCCEECTTTCCEECTTSCCTTTCEETTEECCC
T ss_pred ChhhcchhhccccccC------------------CceeECCCCCCeecceEEcCCCCcCCCEEeec
Confidence 6788999998774311 11122112233578888877778999998654
No 10
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=36.57 E-value=7.9 Score=24.07 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHhhhhcCCCCChhhHHHHHHHHhhhCCCCCCCCceEeccCCccccccccceEEEEecCceee
Q 033505 12 ARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76 (118)
Q Consensus 12 ar~RR~m~Rs~~k~~~~ll~~~rk~k~~~~~~~k~~~ikt~~R~s~IlP~~vg~~~~VyNGk~f~ 76 (118)
|++|+++.|+-|+-.. +..+.--.=....+|-.|-..-+-|+|++-+
T Consensus 12 Sksrr~~RRsh~kl~~------------------p~l~~c~~cG~~~~pH~vc~~CG~Y~gr~v~ 58 (60)
T 2zjr_Z 12 SKSKRDMRRSHHALTA------------------PNLTECPQCHGKKLSHHICPNCGYYDGRQVL 58 (60)
T ss_dssp CTTHHHHHTTTCCCCC------------------CCCEECTTTCCEECTTBCCTTTCBSSSBCSC
T ss_pred ChHHhhhhcccccccC------------------CCceECCCCCCEeCCceEcCCCCcCCCEEee
Confidence 5788889998885211 1222222223347788887777789998765
No 11
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=25.14 E-value=99 Score=19.34 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=22.5
Q ss_pred cceEEEEecCceeeeeeecCCcceeeeeeeeeeeec
Q 033505 63 IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 98 (118)
Q Consensus 63 vg~~~~VyNGk~f~~v~I~~eMIGhklGEF~~Trk~ 98 (118)
--.++.-|+|+.|+.|.- .-. .+-||..|++|-
T Consensus 9 rrvtv~~fkG~~~VdIRe--~Y~-~kdG~~~PgkKG 41 (66)
T 1pcf_A 9 RYVSVRDFKGKVLIDIRE--YWM-DPEGEMKPGRKG 41 (66)
T ss_dssp EEEEEEEETTEEEEEEEE--EEE-CTTSCEEEEEEE
T ss_pred eEEEEEEeCCCEEEEEEE--EEE-CCCCcCCCCccc
Confidence 346888999999998753 111 113899888863
Done!