RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033505
(118 letters)
>gnl|CDD|185442 PTZ00096, PTZ00096, 40S ribosomal protein S15; Provisional.
Length = 143
Score = 213 bits (544), Expect = 5e-73
Identities = 83/116 (71%), Positives = 99/116 (85%)
Query: 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
+ +EL +LF AR RRR RG+KRK L+KKLRKAK+ PGEKP+ V+THLR+MIIVP
Sbjct: 28 LPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAKKATKPGEKPKAVKTHLRDMIIVP 87
Query: 61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIP 116
EM+GS++GVYNGK FN VEIKPEMIGHYL EFSI+YKPV+HG+PG+GATHSSRFIP
Sbjct: 88 EMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYKPVRHGKPGVGATHSSRFIP 143
>gnl|CDD|130097 TIGR01025, rpsS_arch, ribosomal protein
S19(archaeal)/S15(eukaryotic). This model represents
eukaryotic ribosomal protein S15 and its archaeal
equivalent. It excludes bacterial and organellar
ribosomal protein S19. The nomenclature for the archaeal
members is unresolved and given variously as S19 (after
the more distant bacterial homologs) or S15 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 135
Score = 193 bits (491), Expect = 4e-65
Identities = 87/118 (73%), Positives = 98/118 (83%)
Query: 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
MS +ELAKL AR RRR +RGL K L+KKLRKAK+EAP GEKPE +RTH R+MII+P
Sbjct: 18 MSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILP 77
Query: 61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
EM+GS +GVYNGK F QVEIKPEMIGHYL EFSI+ KPVKHGRPGIGAT SS F+PLK
Sbjct: 78 EMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGRPGIGATRSSMFVPLK 135
>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional.
Length = 134
Score = 160 bits (406), Expect = 5e-52
Identities = 67/118 (56%), Positives = 88/118 (74%), Gaps = 3/118 (2%)
Query: 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVP 60
MS +E A+L AR RR +RGL + L++K+RKA+RE +K +RTH+R+MII+P
Sbjct: 20 MSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARRE---KKKGRVIRTHVRDMIILP 76
Query: 61 EMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
EM+G I VYNGK F +VEI PEMIGHYL EF+++ K V+HG PGIGAT SS+F+PLK
Sbjct: 77 EMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPGIGATRSSKFVPLK 134
>gnl|CDD|201079 pfam00203, Ribosomal_S19, Ribosomal protein S19.
Length = 81
Score = 124 bits (313), Expect = 1e-38
Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 20 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 79
R LK+ P +K LRK K+E EK E ++T R I+PEM+G I VYNGK F V
Sbjct: 1 RSLKKGPFVDLKLLRKIKKENTKNEK-EVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVY 59
Query: 80 IKPEMIGHYLAEFSISYKPVKH 101
I PEM+GH L EF+ + K V H
Sbjct: 60 ITPEMVGHKLGEFAPTRKFVGH 81
>gnl|CDD|223263 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal
structure and biogenesis].
Length = 93
Score = 118 bits (299), Expect = 2e-36
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 14 ARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGK 73
RR ++G L+KK+RKAK K +P++T R I+PEM+G I V+NGK
Sbjct: 1 MRRSLKKGPFVDK-HLLKKVRKAKES----GKKKPIKTWSRRSTILPEMVGLTIAVHNGK 55
Query: 74 TFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS 111
F VEI EM+GH L EF+ + V HG GI AT S
Sbjct: 56 KFVPVEITEEMVGHKLGEFAPTRTFVGHGADGIKATRS 93
>gnl|CDD|178985 PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.
Length = 92
Score = 59.4 bits (145), Expect = 6e-13
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
R LK+ P L+KK+ KA G+K + ++T R I+PE +G I V+NG+
Sbjct: 3 RSLKKGPFVDGHLLKKVEKANES---GDK-KVIKTWSRRSTILPEFVGLTIAVHNGRKHV 58
Query: 77 QVEIKPEMIGHYLAEFS 93
V + M+GH L EF+
Sbjct: 59 PVYVTENMVGHKLGEFA 75
>gnl|CDD|130122 TIGR01050, rpsS_bact, ribosomal protein S19, bacterial/organelle.
The homologous protein of the eukaryotic cytosol and
of the Archaea may be designated S15 or S19 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 92
Score = 56.2 bits (136), Expect = 9e-12
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
R LK+ P L+KK+ K K + ++T R I+PEMIG I V+NGK F
Sbjct: 3 RSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFI 58
Query: 77 QVEIKPEMIGHYLAEFS 93
V I +M+GH L EF+
Sbjct: 59 PVYITEDMVGHKLGEFA 75
>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19.
Length = 92
Score = 51.1 bits (123), Expect = 9e-10
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 20 RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 76
R LK+ P L+KK+ K + E+ E + T R I+P MIG I V+NGK
Sbjct: 3 RSLKKNPFVANHLLKKIEKLNTK----EEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHI 58
Query: 77 QVEIKPEMIGHYLAEFS 93
+ I +M+GH L EF+
Sbjct: 59 PIYITDQMVGHKLGEFA 75
>gnl|CDD|178692 PLN03147, PLN03147, ribosomal protein S19; Provisional.
Length = 92
Score = 30.7 bits (69), Expect = 0.063
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 58 IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYK 97
I+P+ + + +YNGKT + +I +GH EF+ + K
Sbjct: 35 ILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTRK 74
>gnl|CDD|220298 pfam09582, AnfO_nitrog, Iron only nitrogenase protein AnfO
(AnfO_nitrog). Proteins in this entry include Anf1 from
Rhodobacter capsulatus (Rhodopseudomonas capsulata) and
AnfO from Azotobacter vinelandii. They are found
exclusively in species which contain the iron-only
nitrogenase, and are encoded immediately downstream of
the structural genes for the nitrogenase enzyme in these
species.
Length = 201
Score = 29.2 bits (66), Expect = 0.40
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 23 KRKPMALIKKLRKAKREAPPGEKPEPV-------RTHLRN-MIIVPEMIGS---IIGVYN 71
K KK R+A E P + P P+ R L+ P+ + S +I
Sbjct: 103 AEKEEEEAKKEREAADEPPNFDIPVPLELGDGRFRLDLKEIQKKNPD-LTSKQVLIPFLE 161
Query: 72 GKTFNQVEIK----PEMIGHYLAEFSISYKPVKHGRPGI 106
FN++EI P L + + + GRP +
Sbjct: 162 NGGFNELEILCSHVPPWFEAELDALGLKAEIEELGRPEV 200
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 27.4 bits (61), Expect = 1.6
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 27 MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 86
+ L+ L + + + R+ + I Y GK N+ E K
Sbjct: 299 LQLVSPLGLFRLKVRDP--LILLVCRDRDCLFACN---VGINDYTGKFINKGEFKSAKCV 353
Query: 87 HYL 89
L
Sbjct: 354 GGL 356
>gnl|CDD|237377 PRK13405, bchH, magnesium chelatase subunit H; Provisional.
Length = 1209
Score = 27.7 bits (62), Expect = 1.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLR-KAKREAPPGEK 45
MS E+ KL R + G P+AL+KKLR K K GE
Sbjct: 104 MSAGEVVKL--TRMGKFDMSGPASGPLALLKKLRGKKKEGGSSGEG 147
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes such as asparagine
synthetase and glutamine-fructose-6-phosphate
transaminase.
Length = 120
Score = 26.7 bits (60), Expect = 2.1
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 52 HLRNMIIVPE-----MI---GSIIGVYNGKTFNQVEIKPEMIGH 87
H R I E M+ G + V+NG+ +N E++ E+
Sbjct: 1 HRRLSIDDSEGGAQPMVSEDGRYVIVFNGEIYNYRELRAELEAK 44
>gnl|CDD|148523 pfam06952, PsiA, PsiA protein. This family consists of several
Enterobacterial PsiA proteins. The function of PsiA is
unknown although it is thought that it may affect the
generation of an SOS signal in Escherichia coli.
Length = 238
Score = 27.1 bits (60), Expect = 2.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 1 MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 40
+S D A+LF RR +R +++ +A +K+R+ RE
Sbjct: 98 LSGDVQAELFPEVRHRRTERRRQKQDIAFTRKMRQEAREV 137
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 26.5 bits (59), Expect = 4.1
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 23 KRKPMALIKKLRKAKREA-PPGEKPEPVRTHLRNMIIVPEMI 63
K P + R+A+ + +PE +N ++V ++
Sbjct: 53 KPYPRPMKLLRREAREKKKLRKLQPERPLDPPKNGLLVKRLV 94
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 26.2 bits (58), Expect = 4.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 17 RFQRG---LKRKPMALIKKLRKAKREAPPGEKPEP 48
R QRG +KR KKL K K+ E+ E
Sbjct: 13 RIQRGINWVKRNIRDFFKKLLK-KKPKEIDEQTEA 46
>gnl|CDD|109875 pfam00837, T4_deiodinase, Iodothyronine deiodinase.
Iodothyronine deiodinase converts thyroxine (T4) to
3,5,3'-triiodothyronine (T3).
Length = 237
Score = 25.9 bits (57), Expect = 5.7
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 6 LAKLFSARARRRFQRGLKRKP 26
L L A R+ R P
Sbjct: 22 LWLLDFACVRKHVVAMNGRDP 42
>gnl|CDD|235529 PRK05601, PRK05601, DNA polymerase III subunit epsilon; Validated.
Length = 377
Score = 25.9 bits (57), Expect = 5.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 13 RARRRFQRGLKRKPMALIKKLRKAKREAPPGEKP 46
R RRR + G KP+ ++ L A+R+ +
Sbjct: 167 RGRRRQRVGHIPKPVVIVDTLATARRQGVALDDI 200
>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription].
Length = 328
Score = 25.7 bits (57), Expect = 7.0
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 1 MSTDELAKLFSARAR---RRFQRGLKRKPMALIKKLR--KAKR 38
+S +ELA R R F+ L P +LR +A+R
Sbjct: 237 LSLEELADRAGLSRRQLERLFRAELGVSPARYYLRLRLERARR 279
>gnl|CDD|201987 pfam01813, ATP-synt_D, ATP synthase subunit D. This is a family
of subunit D form various ATP synthases including
V-type H+ transporting and Na+ dependent. Subunit D is
suggested to be an integral part of the catalytic
sector of the V-ATPase.
Length = 191
Score = 25.2 bits (56), Expect = 7.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 13 RARRR---FQRG---LKRKPMALIKKLRKAKREA 40
R +RR QRG LK+K ALI++ R REA
Sbjct: 4 RLKRRLKLAQRGHKLLKKKRDALIREFRALLREA 37
>gnl|CDD|234822 PRK00720, tatA, twin arginine translocase protein A; Provisional.
Length = 78
Score = 24.6 bits (54), Expect = 8.0
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 30 IKKLRK--AKREAPPGEKPEPVRT 51
IK +K A +APP E PEPVRT
Sbjct: 36 IKSFKKGMADDDAPPAEPPEPVRT 59
>gnl|CDD|109647 pfam00599, Flu_M2, Influenza Matrix protein (M2). This protein
spans the viral membrane with an extracellular
amino-terminus external and a cytoplasmic
carboxy-terminus.
Length = 97
Score = 24.6 bits (53), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 6 LAKLFSARARRRFQRGLKRKP 26
+LF A RRF+ GLKR P
Sbjct: 43 FDRLFFKCAYRRFKHGLKRGP 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.401
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,453,467
Number of extensions: 586963
Number of successful extensions: 753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 45
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)