Query 033506
Match_columns 118
No_of_seqs 171 out of 1063
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01585 G-patch: G-patch doma 99.6 5.9E-16 1.3E-20 93.5 4.8 45 14-58 1-45 (45)
2 smart00443 G_patch glycine ric 99.5 1.4E-14 3.1E-19 87.5 4.6 46 12-57 1-46 (47)
3 KOG2384 Major histocompatibili 99.5 1.9E-14 4.2E-19 111.0 6.2 99 9-114 122-223 (223)
4 KOG2809 Telomerase elongation 99.3 3.5E-12 7.6E-17 104.2 4.5 57 9-65 20-76 (326)
5 KOG0965 Predicted RNA-binding 98.9 5.9E-10 1.3E-14 99.1 3.8 56 11-66 902-958 (988)
6 PF12656 G-patch_2: DExH-box s 98.9 1E-09 2.2E-14 73.3 3.5 52 9-60 24-75 (77)
7 KOG2184 Tuftelin-interacting p 98.8 1.9E-09 4.2E-14 96.0 3.3 51 13-63 114-164 (767)
8 KOG2185 Predicted RNA-processi 98.4 1.9E-07 4E-12 78.9 2.3 46 12-57 294-339 (486)
9 KOG3673 FtsJ-like RNA methyltr 98.1 1.4E-06 3E-11 76.4 2.9 47 13-59 81-127 (845)
10 KOG1996 mRNA splicing factor [ 98.0 5.3E-06 1.2E-10 68.0 3.1 39 16-54 213-251 (378)
11 KOG0154 RNA-binding protein RB 98.0 4.6E-06 9.9E-11 72.3 2.6 49 10-58 507-555 (573)
12 KOG1994 Predicted RNA binding 97.8 7E-06 1.5E-10 65.0 1.8 55 10-64 76-133 (268)
13 KOG4315 G-patch nucleic acid b 97.8 1.5E-05 3.2E-10 67.5 3.0 56 9-65 148-203 (455)
14 KOG4368 Predicted RNA binding 97.6 4.6E-05 1E-09 67.1 3.4 51 8-59 680-734 (757)
15 KOG2138 Predicted RNA binding 96.4 0.0023 4.9E-08 57.7 2.6 21 14-34 147-167 (883)
16 KOG1994 Predicted RNA binding 94.2 0.021 4.5E-07 45.6 1.2 49 14-62 37-85 (268)
17 PF15337 Vasculin: Vascular pr 44.5 13 0.00027 25.9 1.1 13 18-30 12-24 (97)
18 PF00446 GnRH: Gonadotropin-re 39.3 15 0.00032 15.6 0.5 7 24-30 4-10 (10)
19 KOG4779 Predicted membrane pro 31.4 35 0.00076 22.8 1.7 17 19-35 25-41 (82)
20 PF14668 RICTOR_V: Rapamycin-i 27.9 38 0.00083 22.1 1.4 17 12-28 56-72 (73)
21 PRK09653 eutD phosphotransacet 27.7 38 0.00082 27.6 1.6 39 9-49 265-303 (324)
22 TIGR02706 P_butyryltrans phosp 23.2 58 0.0013 26.2 1.9 38 9-49 239-276 (294)
23 PRK07742 phosphate butyryltran 22.4 64 0.0014 26.0 2.0 38 9-49 242-279 (299)
24 PF08373 RAP: RAP domain; Int 21.4 55 0.0012 19.3 1.1 16 13-28 18-33 (58)
No 1
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.62 E-value=5.9e-16 Score=93.51 Aligned_cols=45 Identities=56% Similarity=1.006 Sum_probs=43.1
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCcccccc
Q 033506 14 SSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE 58 (118)
Q Consensus 14 ~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~ 58 (118)
++++|++||.+|||++|+|||++.+|+++||++..+.++.|||+.
T Consensus 1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~ 45 (45)
T PF01585_consen 1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE 45 (45)
T ss_pred CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence 478999999999999999999999999999999999999999974
No 2
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.52 E-value=1.4e-14 Score=87.53 Aligned_cols=46 Identities=59% Similarity=1.126 Sum_probs=44.2
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccc
Q 033506 12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA 57 (118)
Q Consensus 12 i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~ 57 (118)
++.+++|++||.+|||++|+|||++.+|+++||++..+.++.|||+
T Consensus 1 ~~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~ 46 (47)
T smart00443 1 ISTSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46 (47)
T ss_pred CCcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCC
Confidence 4678999999999999999999999999999999999999999997
No 3
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=99.52 E-value=1.9e-14 Score=110.98 Aligned_cols=99 Identities=30% Similarity=0.536 Sum_probs=72.4
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCCCchhhhhhhhhhhcc--CCCchhh-
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKPIEALEAESKNEKE--KPPKKSK- 85 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~~~~~~~~~~~~~~~~--~~~kk~k- 85 (118)
+-.|+.+++|+++|.+.||+++.|||.+++|+.+||.+.++.|+.|||+... ..++.+++. -+-++.. .+-+.+.
T Consensus 122 p~~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~-~~rVthfga-fd~navrr~~p~~vp~~ 199 (223)
T KOG2384|consen 122 PHLIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEID-QPRVTHFGA-FDVNAVRRKGPRQVPIQ 199 (223)
T ss_pred CCcCCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhc-cccccccch-hhHHHHHhcCCccccch
Confidence 4567899999999999999999999999999999999999999999999887 334444431 1222211 1111122
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHhC
Q 033506 86 ASKRMRKMLELERRLQETEFDRAFRREFW 114 (118)
Q Consensus 86 ~~k~~rk~~e~~k~~~E~~~e~~~r~~f~ 114 (118)
.++.+|+ ++..|+.||+.||+.|.
T Consensus 200 t~kD~rr-----~e~ke~~~ernlR~~~~ 223 (223)
T KOG2384|consen 200 TSKDVRR-----KEAKEKHFERNLRTYMN 223 (223)
T ss_pred hhHHHHH-----HHHHHHHHHHHHHHhcC
Confidence 3444444 46778899999999873
No 4
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=3.5e-12 Score=104.22 Aligned_cols=57 Identities=39% Similarity=0.659 Sum_probs=52.4
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCCCc
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKP 65 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~~~ 65 (118)
.+++|.+.+|++||.+|||.+|.|||.+.||+..||++.++.|+.|||++.......
T Consensus 20 ~w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~ned~W 76 (326)
T KOG2809|consen 20 AWSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNNEDQW 76 (326)
T ss_pred hhcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccccccc
Confidence 467789999999999999999999999999999999999999999999998875443
No 5
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=98.94 E-value=5.9e-10 Score=99.13 Aligned_cols=56 Identities=38% Similarity=0.672 Sum_probs=50.1
Q ss_pred CCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeee-eeCCCccccccCCCCCCch
Q 033506 11 AITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTH-VKKNKRGIGAEKVKRPKPI 66 (118)
Q Consensus 11 ~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~-~k~d~~GLG~~~~~~~~~~ 66 (118)
.|...|||++||+||||++|+|||..++||++||.+. .+.++.|+|.+.+......
T Consensus 902 KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s~pael~pe 958 (988)
T KOG0965|consen 902 KLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGSQPAELQPE 958 (988)
T ss_pred hccccchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccCCccccCch
Confidence 4678999999999999999999999999999999885 6889999999988876643
No 6
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.92 E-value=1e-09 Score=73.25 Aligned_cols=52 Identities=27% Similarity=0.601 Sum_probs=47.9
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCC
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKV 60 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~ 60 (118)
...|+...||..||+-|||++++++|++.++.+.|+....++.+.|||+...
T Consensus 24 Y~~vPVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~~ 75 (77)
T PF12656_consen 24 YEAVPVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKPA 75 (77)
T ss_pred hhhCCHHHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCCC
Confidence 4567889999999999999999999999999999999999999999999753
No 7
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=98.83 E-value=1.9e-09 Score=95.98 Aligned_cols=51 Identities=35% Similarity=0.657 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCC
Q 033506 13 TSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRP 63 (118)
Q Consensus 13 ~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~ 63 (118)
.+.+||.+||++|||+||.|||+++|||+.||++++++.+.|+|+-.....
T Consensus 114 ~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~~ 164 (767)
T KOG2184|consen 114 GTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFETE 164 (767)
T ss_pred cccchhHHHHHHcCCccccccCccccccccHHhcccCccCccccccccccc
Confidence 578999999999999999999999999999999999999999998765543
No 8
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=98.36 E-value=1.9e-07 Score=78.89 Aligned_cols=46 Identities=35% Similarity=0.633 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccc
Q 033506 12 ITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGA 57 (118)
Q Consensus 12 i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~ 57 (118)
..+-+||.+||.||||..|.|||++++||+.||.+++-+.+.-|-.
T Consensus 294 ~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLDe 339 (486)
T KOG2185|consen 294 NHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLDE 339 (486)
T ss_pred cccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHHH
Confidence 3466899999999999999999999999999999999887776654
No 9
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=98.14 E-value=1.4e-06 Score=76.41 Aligned_cols=47 Identities=36% Similarity=0.622 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccC
Q 033506 13 TSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEK 59 (118)
Q Consensus 13 ~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~ 59 (118)
..+++..+||.+||++.|+|||+.+||+.+||.+.....++|||...
T Consensus 81 ~y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l 127 (845)
T KOG3673|consen 81 KYLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNL 127 (845)
T ss_pred ccchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccc
Confidence 36789999999999999999999999999999999999999999865
No 10
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.97 E-value=5.3e-06 Score=68.02 Aligned_cols=39 Identities=31% Similarity=0.623 Sum_probs=34.6
Q ss_pred cHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCcc
Q 033506 16 NIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRG 54 (118)
Q Consensus 16 ~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~G 54 (118)
.+..+||++|||++|+|||+++||+..|+.+.....+.|
T Consensus 213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG 251 (378)
T KOG1996|consen 213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGG 251 (378)
T ss_pred hHHHHHHHHhCcccccCcCccccccccceeeeeccccCc
Confidence 356899999999999999999999999998887766666
No 11
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=97.95 E-value=4.6e-06 Score=72.27 Aligned_cols=49 Identities=43% Similarity=0.803 Sum_probs=47.0
Q ss_pred CCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCcccccc
Q 033506 10 AAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAE 58 (118)
Q Consensus 10 ~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~ 58 (118)
..|+.+++|.+||.+|||..|+|||...+|+..||++.....+.|||..
T Consensus 507 ~~~~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~ 555 (573)
T KOG0154|consen 507 PPIDTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK 555 (573)
T ss_pred ccCCCCccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence 4578999999999999999999999999999999999999999999998
No 12
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=97.85 E-value=7e-06 Score=65.03 Aligned_cols=55 Identities=33% Similarity=0.561 Sum_probs=49.8
Q ss_pred CCCCCCcHHHHHHHhcCCCCCCCCCCCCCC---ccCceeeeeeCCCccccccCCCCCC
Q 033506 10 AAITSSNIGFQLLKKHGWKEGTGLGIAEQG---RLEPIRTHVKKNKRGIGAEKVKRPK 64 (118)
Q Consensus 10 ~~i~~s~~G~kmL~kmGW~~G~GLG~~~qG---i~~PI~~~~k~d~~GLG~~~~~~~~ 64 (118)
..|..+++||.+|.+|||+||.-||++..+ +..||...++..+.|+|...+..+.
T Consensus 76 ~~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed~~~~~ 133 (268)
T KOG1994|consen 76 RGIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDEDLYNPG 133 (268)
T ss_pred ccccccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCcccccccc
Confidence 356689999999999999999999999999 9999999999999999998766544
No 13
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]
Probab=97.79 E-value=1.5e-05 Score=67.55 Aligned_cols=56 Identities=29% Similarity=0.601 Sum_probs=45.5
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCCCCc
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKRPKP 65 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~~~~ 65 (118)
-.+|+-..+|+.||.-|||++|.|+|++.|+ +.+....+++.+.|||++.......
T Consensus 148 yeaiPVe~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~~~~~~~ 203 (455)
T KOG4315|consen 148 YEAIPVEGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADPALKPKA 203 (455)
T ss_pred cccCchhHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCccccccc
Confidence 3578899999999999999999999999554 4455567889999999986655443
No 14
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=97.61 E-value=4.6e-05 Score=67.06 Aligned_cols=51 Identities=39% Similarity=0.734 Sum_probs=42.4
Q ss_pred CCCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCC----ccccccC
Q 033506 8 SSAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNK----RGIGAEK 59 (118)
Q Consensus 8 ~~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~----~GLG~~~ 59 (118)
.+..|.++|.|.+||.+|||. |.|||...+||.+||.+.--.|+ .|+|+..
T Consensus 680 ~s~~lse~NKGhQml~KMGWs-G~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l 734 (757)
T KOG4368|consen 680 NSAPLGEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL 734 (757)
T ss_pred CCCccccccchhhhHhhcCcc-cCCcccccccccCcccCccccchhhhhcccCccc
Confidence 455689999999999999999 88999999999999987543333 6777755
No 15
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=96.37 E-value=0.0023 Score=57.66 Aligned_cols=21 Identities=52% Similarity=1.189 Sum_probs=19.7
Q ss_pred CCcHHHHHHHhcCCCCCCCCC
Q 033506 14 SSNIGFQLLKKHGWKEGTGLG 34 (118)
Q Consensus 14 ~s~~G~kmL~kmGW~~G~GLG 34 (118)
+..||++||.+|||.+|+|+|
T Consensus 147 s~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 147 SDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhHHHHHHHHhcCccCCCcC
Confidence 467999999999999999999
No 16
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=94.24 E-value=0.021 Score=45.58 Aligned_cols=49 Identities=33% Similarity=0.513 Sum_probs=44.1
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeeeCCCccccccCCCC
Q 033506 14 SSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVKKNKRGIGAEKVKR 62 (118)
Q Consensus 14 ~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k~d~~GLG~~~~~~ 62 (118)
.+.+++++|.-|||.++.-||.+...+-.|+++-.+.-++|||+..+..
T Consensus 37 ~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~gf 85 (268)
T KOG1994|consen 37 IMRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKPGF 85 (268)
T ss_pred hhhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCcCh
Confidence 4567899999999999999999999999999999999999999876553
No 17
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=44.45 E-value=13 Score=25.95 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=10.9
Q ss_pred HHHHHHhcCCCCC
Q 033506 18 GFQLLKKHGWKEG 30 (118)
Q Consensus 18 G~kmL~kmGW~~G 30 (118)
-+++|+.|||.+.
T Consensus 12 EhRLLk~MGWqEy 24 (97)
T PF15337_consen 12 EHRLLKAMGWQEY 24 (97)
T ss_pred HHHHHHHhccccc
Confidence 3689999999874
No 18
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=39.29 E-value=15 Score=15.60 Aligned_cols=7 Identities=71% Similarity=1.721 Sum_probs=4.6
Q ss_pred hcCCCCC
Q 033506 24 KHGWKEG 30 (118)
Q Consensus 24 kmGW~~G 30 (118)
++||.||
T Consensus 4 S~~w~PG 10 (10)
T PF00446_consen 4 SHGWKPG 10 (10)
T ss_pred ccccCCC
Confidence 3677775
No 19
>KOG4779 consensus Predicted membrane protein [Function unknown]
Probab=31.45 E-value=35 Score=22.79 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=13.4
Q ss_pred HHHHHhcCCCCCCCCCC
Q 033506 19 FQLLKKHGWKEGTGLGI 35 (118)
Q Consensus 19 ~kmL~kmGW~~G~GLG~ 35 (118)
-+.|.+.||..++|+|-
T Consensus 25 eRFL~riGws~d~~~gF 41 (82)
T KOG4779|consen 25 ERFLKRIGWSTDQGIGF 41 (82)
T ss_pred HHHHHHhCcCcccCccc
Confidence 46788999998877763
No 20
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=27.90 E-value=38 Score=22.08 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHhcCCC
Q 033506 12 ITSSNIGFQLLKKHGWK 28 (118)
Q Consensus 12 i~~s~~G~kmL~kmGW~ 28 (118)
|..+.-|..+|..+||.
T Consensus 56 is~T~~G~~~L~~~gW~ 72 (73)
T PF14668_consen 56 ISSTEEGAEILDELGWE 72 (73)
T ss_pred HhCCHHHHHHHHHcCCC
Confidence 45778899999999996
No 21
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=27.66 E-value=38 Score=27.63 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=30.9
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeee
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVK 49 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k 49 (118)
-+.|+..|+++++|+.+| .+.-.|.==+|...||....+
T Consensus 265 ~P~l~agNi~yK~l~~~~--~~~~~Gpil~G~~~Pv~~~Sr 303 (324)
T PRK09653 265 FPSLEAGNIGYKIAQRLG--GFEAVGPILQGLNKPVNDLSR 303 (324)
T ss_pred cCChHHhHHHHHHHHHhc--CCeEechHHhCCCCCEEeCCC
Confidence 467899999999999997 355677667889999965544
No 22
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=23.17 E-value=58 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeee
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVK 49 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k 49 (118)
-+.|+..|+++++|+.+| +...|.--+|...||-...+
T Consensus 239 ~P~l~agNi~~K~~~~~~---~~~~g~il~G~~~Pv~~~sR 276 (294)
T TIGR02706 239 VPDIEAGNVLYKTLTYFA---KSKNGGILVGTKAPVVLTSR 276 (294)
T ss_pred eCChHHHHHHHHHHHHhc---CCcEeceeecCCCCeEECCC
Confidence 467889999999999998 22488888999999954443
No 23
>PRK07742 phosphate butyryltransferase; Validated
Probab=22.44 E-value=64 Score=25.98 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeee
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVK 49 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k 49 (118)
-+.|+..|+++++|+.+|-- .+|.-=+|...||-...+
T Consensus 242 ~Pnl~agNi~~K~l~~~~~~---~~g~il~G~~~Pv~~~SR 279 (299)
T PRK07742 242 VPTIEAGNVLYKSLVYFADA---KVGAMIAGAKAPIVLTSR 279 (299)
T ss_pred eCChHHHHHHHHHHHHhcCC---cEeceeeccCCCEEeCCC
Confidence 46788999999999999832 488888999999954443
No 24
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=21.42 E-value=55 Score=19.30 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHhcCCC
Q 033506 13 TSSNIGFQLLKKHGWK 28 (118)
Q Consensus 13 ~~s~~G~kmL~kmGW~ 28 (118)
..+.+=.++|++|||+
T Consensus 18 g~t~lk~r~L~~~G~~ 33 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYK 33 (58)
T ss_pred hHHHHHHHHHHHCCCE
Confidence 3455667899999997
Done!