Query 033506
Match_columns 118
No_of_seqs 171 out of 1063
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ki0_A DS119; beta-alpha-beta, 38.6 4.5 0.00015 22.0 -0.7 9 108-116 28-36 (36)
2 4anr_A Soluble lytic transglyc 14.3 78 0.0027 25.2 1.9 19 18-36 213-231 (323)
3 1q02_A Sequestosome 1; helical 13.9 71 0.0024 19.0 1.2 24 8-31 3-26 (52)
4 3sl9_C B-cell CLL/lymphoma 9 p 13.7 2E+02 0.0068 16.9 3.1 11 107-117 26-36 (55)
5 1qus_A Lytic murein transglyco 12.6 91 0.0031 24.7 1.9 19 18-36 217-235 (322)
6 3uf6_A LMO1369 protein; struct 9.7 33 0.0011 26.6 -1.6 38 9-49 234-271 (291)
7 3da7_A Barnase circular permut 9.7 1E+02 0.0035 21.0 1.0 21 12-32 65-85 (111)
8 2c4b_A Barnase mcoeeti fusion; 6.7 1.1E+02 0.0037 21.7 0.1 21 12-32 19-39 (143)
9 2dah_A Ubiquilin-3; UBA domain 5.8 4.5E+02 0.015 14.9 2.5 12 17-28 11-22 (54)
10 3mhx_A Putative ferrous iron t 5.5 1.9E+02 0.0066 17.5 0.8 45 14-58 23-69 (85)
No 1
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=38.57 E-value=4.5 Score=22.04 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=6.3
Q ss_pred HHHHHhCCC
Q 033506 108 AFRREFWPD 116 (118)
Q Consensus 108 ~~r~~f~~~ 116 (118)
++|--||+|
T Consensus 28 nirvtfwgd 36 (36)
T 2ki0_A 28 NIRVTFWGD 36 (36)
T ss_dssp CCCCCBCCC
T ss_pred cEEEEeecC
Confidence 567778876
No 2
>4anr_A Soluble lytic transglycosylase B; lyase, EF-hand like motif, peptidoglycan; 1.84A {Pseudomonas aeruginosa}
Probab=14.27 E-value=78 Score=25.18 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCCCCCCCCC
Q 033506 18 GFQLLKKHGWKEGTGLGIA 36 (118)
Q Consensus 18 G~kmL~kmGW~~G~GLG~~ 36 (118)
...+|+++||++|+..|..
T Consensus 213 ~AnyL~~~GW~~g~pwg~e 231 (323)
T 4anr_A 213 VASYFKQHGWVTGEPVVSV 231 (323)
T ss_dssp HHHHHHHTTCCTTCCCEEE
T ss_pred HHHHHHHcCCCCCCCeEEE
Confidence 4689999999999777664
No 3
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=13.87 E-value=71 Score=18.97 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=14.6
Q ss_pred CCCCCCCCcHHHHHHHhcCCCCCC
Q 033506 8 SSAAITSSNIGFQLLKKHGWKEGT 31 (118)
Q Consensus 8 ~~~~i~~s~~G~kmL~kmGW~~G~ 31 (118)
|+.+-+.-.-....|..|||+...
T Consensus 3 p~~~D~rl~~al~qMl~MGF~neg 26 (52)
T 1q02_A 3 PPEADPRLIESLSQMLSMGFSDEG 26 (52)
T ss_dssp CTTSCHHHHHHHHHHHTTTCCCTT
T ss_pred CCCcChHHHHHHHHHHHcCCCccc
Confidence 333333334567789999998543
No 4
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=13.74 E-value=2e+02 Score=16.86 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=6.2
Q ss_pred HHHHHHhCCCC
Q 033506 107 RAFRREFWPDN 117 (118)
Q Consensus 107 ~~~r~~f~~~~ 117 (118)
|.+.|+||||.
T Consensus 26 rdi~r~~~pDd 36 (55)
T 3sl9_C 26 RDIQRMLFPDE 36 (55)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHhCCcc
Confidence 46788888873
No 5
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Probab=12.65 E-value=91 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCCCCCCCCC
Q 033506 18 GFQLLKKHGWKEGTGLGIA 36 (118)
Q Consensus 18 G~kmL~kmGW~~G~GLG~~ 36 (118)
+..+|+.+||+.|...|..
T Consensus 217 ~A~YL~~~Gw~~g~~wg~e 235 (322)
T 1qus_A 217 VANYFKAHGWVKGDQVAVM 235 (322)
T ss_dssp HHHHHHHTTCCTTCCSEEE
T ss_pred HHHHHHHcCCCCCCceeEE
Confidence 4689999999999876643
No 6
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=9.73 E-value=33 Score=26.56 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=27.0
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeee
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVK 49 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k 49 (118)
-+.|+..|+++++|+.+| |...|.=-+|...||-...+
T Consensus 234 ~P~l~agNi~yK~l~~~~---~~~~Gpil~G~~~Pv~~~SR 271 (291)
T 3uf6_A 234 APNIETGNALYKSLVYFA---GAKVGSAVVGAKVPIVISSR 271 (291)
T ss_dssp CSSHHHHHHHHHHHHHHS---CCEEEEEEESSSSCEECCCT
T ss_pred ECChHHHHHHHHHHHHhc---CCccccceecCCCcEEECCC
Confidence 456778899999999988 22366666788888754433
No 7
>3da7_A Barnase circular permutant; circular permutant, protein-protein complex, endonuclease, cytoplasm, protein binding; 2.25A {Bacillus amyloliquefaciens}
Probab=9.73 E-value=1e+02 Score=20.98 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHhcCCCCCCC
Q 033506 12 ITSSNIGFQLLKKHGWKEGTG 32 (118)
Q Consensus 12 i~~s~~G~kmL~kmGW~~G~G 32 (118)
+|..=|-.+-.+++||+++.|
T Consensus 65 LP~nyITK~eA~~~GW~~~kg 85 (111)
T 3da7_A 65 LPDNYITKSEAQALGWVASKG 85 (111)
T ss_dssp CCTTEECHHHHHHTTCCTTTT
T ss_pred CCcceeeHHHHHHcCCCCCCC
Confidence 444445566788999998754
No 8
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=6.68 E-value=1.1e+02 Score=21.70 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHhcCCCCCCC
Q 033506 12 ITSSNIGFQLLKKHGWKEGTG 32 (118)
Q Consensus 12 i~~s~~G~kmL~kmGW~~G~G 32 (118)
++..-+-.+...++||.++.|
T Consensus 19 LP~~yiTK~eA~~~GW~p~kg 39 (143)
T 2c4b_A 19 LPDNYITKSEAQALGWVASKG 39 (143)
T ss_dssp CCTTEECHHHHHHTTCCGGGT
T ss_pred CCcccccHHHHHHcCCCCCcC
Confidence 555566778899999998753
No 9
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=5.81 E-value=4.5e+02 Score=14.89 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCC
Q 033506 17 IGFQLLKKHGWK 28 (118)
Q Consensus 17 ~G~kmL~kmGW~ 28 (118)
--...|..|||.
T Consensus 11 ~~l~~L~~MGF~ 22 (54)
T 2dah_A 11 VQLEQLRSMGFL 22 (54)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 345778888885
No 10
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=5.55 E-value=1.9e+02 Score=17.47 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCcHHHHHHHhcCCCCCCCCCCCCCC-cc-CceeeeeeCCCcccccc
Q 033506 14 SSNIGFQLLKKHGWKEGTGLGIAEQG-RL-EPIRTHVKKNKRGIGAE 58 (118)
Q Consensus 14 ~s~~G~kmL~kmGW~~G~GLG~~~qG-i~-~PI~~~~k~d~~GLG~~ 58 (118)
.+.-=.+.|..||..+|.-+=.-... .- .|+.+.+......|+..
T Consensus 23 ~~~~~~~rL~~lGl~pG~~v~V~~~~p~g~~pi~v~v~g~~iaL~~~ 69 (85)
T 3mhx_A 23 ANDAIARRLRELGFVKGEEVRMVAKGPVGGEPLLVQVGFTRFALRIS 69 (85)
T ss_dssp SSCHHHHHHHHTTCCTTCEEEEEESCSSSCSCEEEEETTEEEEECHH
T ss_pred CCHHHHHHHHHCCCCCCCEEEEEEeCCCCCCCEEEEECCEEEEcCHH
Confidence 34445689999999999655443333 33 58877776555555543
Done!