Query 033506
Match_columns 118
No_of_seqs 171 out of 1063
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 04:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2k0bx1 a.5.2.1 (X:1-52) Seque 34.7 12 0.00089 20.9 2.2 27 6-32 1-27 (52)
2 d1l6ja1 a.20.1.2 (A:29-105) Ge 12.4 24 0.0017 20.5 0.2 23 10-32 9-31 (77)
3 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 11.9 59 0.0043 17.4 1.9 21 9-29 6-26 (51)
4 d2bgxa1 a.20.1.1 (A:180-260) P 9.0 76 0.0055 18.5 1.8 12 107-118 49-60 (81)
5 d2c4ba1 d.1.1.2 (A:3-110) Barn 8.2 41 0.003 21.2 0.2 21 12-32 18-38 (108)
6 d1r7aa1 b.71.1.1 (A:435-504) S 7.8 58 0.0043 18.7 0.8 26 27-55 31-56 (70)
7 d1xrsb2 d.230.4.1 (B:33-84) D- 7.4 98 0.0071 16.9 1.6 12 18-29 20-31 (52)
8 d2af4c1 c.77.1.5 (C:2-333) Pho 6.9 26 0.0019 25.6 -1.5 39 9-49 271-309 (332)
9 d1qusa_ d.2.1.6 (A:) 36 kDa so 6.1 97 0.007 22.6 1.5 15 19-33 218-232 (322)
10 d1r7ma1 d.95.2.1 (A:3-120) DNA 5.7 77 0.0056 19.5 0.6 9 109-117 110-118 (118)
No 1
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.73 E-value=12 Score=20.92 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=19.2
Q ss_pred CCCCCCCCCCcHHHHHHHhcCCCCCCC
Q 033506 6 SGSSAAITSSNIGFQLLKKHGWKEGTG 32 (118)
Q Consensus 6 ~~~~~~i~~s~~G~kmL~kmGW~~G~G 32 (118)
|+||..-+.-+-...-|..|||+-..|
T Consensus 1 ~~pp~~dp~l~~al~qM~aMGFsneGG 27 (52)
T d2k0bx1 1 GSPPEADPRLIESLSQMLSMGFSDEGG 27 (52)
T ss_dssp CCCTTTSTTHHHHHHHHHHHTCCCSSS
T ss_pred CCCcccChHHHHHHHHHHHcCCCCcch
Confidence 455555555667788999999986544
No 2
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.36 E-value=24 Score=20.49 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=13.9
Q ss_pred CCCCCCcHHHHHHHhcCCCCCCC
Q 033506 10 AAITSSNIGFQLLKKHGWKEGTG 32 (118)
Q Consensus 10 ~~i~~s~~G~kmL~kmGW~~G~G 32 (118)
+.+..-.+...+|.++||-+...
T Consensus 9 ~~~~d~~~a~~yL~~fGYl~~~~ 31 (77)
T d1l6ja1 9 TNLTDRQLAEEYLYRYGYTRVAE 31 (77)
T ss_dssp CCCCHHHHHHHHHHHTTCC----
T ss_pred cccchHHHHHHHHHHcCCCCCCC
Confidence 33444456779999999987644
No 3
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.86 E-value=59 Score=17.41 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=13.8
Q ss_pred CCCCCCCcHHHHHHHhcCCCC
Q 033506 9 SAAITSSNIGFQLLKKHGWKE 29 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~ 29 (118)
++.+..+.-....|..|||.+
T Consensus 6 ~p~~~~~~~~l~~L~~MGF~~ 26 (51)
T d2cpwa1 6 RPGTIKHGSALDVLLSMGFPR 26 (51)
T ss_dssp SSCSSSCCCHHHHHHHHTCCH
T ss_pred CCCCCCCHHHHHHHHHcCCCH
Confidence 334444455577888999975
No 4
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.02 E-value=76 Score=18.54 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=9.5
Q ss_pred HHHHHHhCCCCC
Q 033506 107 RAFRREFWPDNV 118 (118)
Q Consensus 107 ~~~r~~f~~~~~ 118 (118)
++|++-|-|+||
T Consensus 49 ~AFQrhFRp~~i 60 (81)
T d2bgxa1 49 MAFQMHFRPTLY 60 (81)
T ss_dssp HHHHHHHCTTCC
T ss_pred HHHHHHcccccc
Confidence 378888888876
No 5
>d2c4ba1 d.1.1.2 (A:3-110) Barnase {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=8.22 E-value=41 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHhcCCCCCCC
Q 033506 12 ITSSNIGFQLLKKHGWKEGTG 32 (118)
Q Consensus 12 i~~s~~G~kmL~kmGW~~G~G 32 (118)
||..=|-.+-..++||+++.|
T Consensus 18 LP~~yiTk~qA~~~GW~~~kg 38 (108)
T d2c4ba1 18 LPDNYITKSEAQALGWVASKG 38 (108)
T ss_dssp CCTTEECHHHHHHTTCCGGGT
T ss_pred CCcccccHHHHHHcCCCCCcC
Confidence 444455567788999999877
No 6
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=7.81 E-value=58 Score=18.67 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCccCceeeeeeCCCccc
Q 033506 27 WKEGTGLGIAEQGRLEPIRTHVKKNKRGI 55 (118)
Q Consensus 27 W~~G~GLG~~~qGi~~PI~~~~k~d~~GL 55 (118)
|.|+.|||.+. ..||..-...|..|=
T Consensus 31 FeP~~GlGv~N---t~~VA~L~W~D~aG~ 56 (70)
T d1r7aa1 31 FEPKRGLGVDN---TTPVAMLEWEDSAGD 56 (70)
T ss_dssp ECGGGSCSTTC---CSCCEEEEEEETTEE
T ss_pred EcCCccccccC---CceeeEEEEeccCCC
Confidence 56788888865 345555556665553
No 7
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=7.40 E-value=98 Score=16.89 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=9.3
Q ss_pred HHHHHHhcCCCC
Q 033506 18 GFQLLKKHGWKE 29 (118)
Q Consensus 18 G~kmL~kmGW~~ 29 (118)
..+++.+||.++
T Consensus 20 Ak~la~kMGl~~ 31 (52)
T d1xrsb2 20 AKQIALKMGLEE 31 (52)
T ss_dssp HHHHHHTTSSCC
T ss_pred HHHHHHHhCCCc
Confidence 467899998874
No 8
>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]}
Probab=6.94 E-value=26 Score=25.62 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=26.8
Q ss_pred CCCCCCCcHHHHHHHhcCCCCCCCCCCCCCCccCceeeeee
Q 033506 9 SAAITSSNIGFQLLKKHGWKEGTGLGIAEQGRLEPIRTHVK 49 (118)
Q Consensus 9 ~~~i~~s~~G~kmL~kmGW~~G~GLG~~~qGi~~PI~~~~k 49 (118)
-+.|+..|+++++|+.+|-- .-.|.==+|...||....+
T Consensus 271 fPnl~agNi~yK~l~~~~~a--~~~Gpil~G~~~Pv~~~sR 309 (332)
T d2af4c1 271 FPDLNCGNIAYKIAQRLAKA--EAYGPITQGLAKPINDLSR 309 (332)
T ss_dssp CSSHHHHHHHHHHHHHTSCC--EEEEEEEESBSSCEEECCT
T ss_pred eCChHHhHHHHHHHHHhcCC--eEEcchhhcCCCCEEECCC
Confidence 46678899999999999732 2344444677788755443
No 9
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=97 Score=22.56 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=12.1
Q ss_pred HHHHHhcCCCCCCCC
Q 033506 19 FQLLKKHGWKEGTGL 33 (118)
Q Consensus 19 ~kmL~kmGW~~G~GL 33 (118)
..+|.++||..|.-.
T Consensus 218 ANYL~~~GW~~g~~~ 232 (322)
T d1qusa_ 218 ANYFKAHGWVKGDQV 232 (322)
T ss_dssp HHHHHHTTCCTTCCS
T ss_pred HHHHHHcCCCCCCce
Confidence 469999999987544
No 10
>d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.71 E-value=77 Score=19.55 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHhCCCC
Q 033506 109 FRREFWPDN 117 (118)
Q Consensus 109 ~r~~f~~~~ 117 (118)
++..||.+|
T Consensus 110 ~~~lFY~nn 118 (118)
T d1r7ma1 110 LANLFIVNN 118 (118)
T ss_dssp HHHHHEETT
T ss_pred HHHHhccCc
Done!