Query 033508
Match_columns 118
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 04:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jpj_A Bacteriocin lactococcin 35.7 22 0.00076 21.6 2.0 19 99-117 3-21 (39)
2 1fm5_A Early activation antige 25.5 15 0.0005 26.1 0.0 34 31-64 30-63 (199)
3 2e0g_A Chromosomal replication 24.5 1.1E+02 0.0037 19.7 4.1 19 14-32 85-103 (107)
4 1j8c_A Ubiquitin-like protein 24.3 63 0.0022 21.9 3.1 13 1-13 1-13 (125)
5 2hac_A T-cell surface glycopro 23.0 37 0.0013 20.0 1.4 18 75-92 6-23 (33)
6 2jln_A MHP1; hydantoin, transp 22.4 1.5E+02 0.005 24.1 5.4 61 50-113 304-370 (501)
7 2kvo_A Photosystem II reaction 21.7 34 0.0011 25.0 1.3 13 95-107 86-98 (120)
8 2k2v_A ALR1010 protein, CCBP; 18.2 34 0.0012 25.2 0.7 8 110-117 117-124 (126)
9 1v54_M VIIIB, IX, cytochrome C 12.9 2.2E+02 0.0074 17.5 3.3 29 46-74 16-44 (46)
10 3pys_P 30S ribosomal protein S 12.7 76 0.0026 21.4 1.2 10 109-118 56-65 (83)
No 1
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=35.74 E-value=22 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 033508 99 WQFVLKFTKVLEYWVARVL 117 (118)
Q Consensus 99 W~~i~kF~kvLeyW~gRGm 117 (118)
|+.|-+=..-..||++.||
T Consensus 3 ~~~ig~~vg~aaywv~k~l 21 (39)
T 2jpj_A 3 WDDIGQGIGRVAYWVGKAL 21 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHh
Confidence 7888888888899999987
No 2
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural killer cell receptor, lectin, C-type lectin, immune system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Probab=25.52 E-value=15 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCCCCceEEehhhhHHHHHHHHHHHHHHHHH
Q 033508 31 GRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVL 64 (118)
Q Consensus 31 ~~~~~~~DplL~vcr~fs~vTa~~AlLCi~vNvl 64 (118)
.+.+.+.=.+-+.|++..++-.++.++++++..+
T Consensus 30 ~~~~~~~~~~~~~~~~l~~lli~~l~~~~i~~~~ 63 (199)
T 1fm5_A 30 STRHEGSFQVPVLCAVMNVVFITILIIALIALSV 63 (199)
T ss_dssp ----------------------------------
T ss_pred CCcccCcEeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456667887776665555555555443
No 3
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=24.51 E-value=1.1e+02 Score=19.74 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 033508 14 PPPQPQPPPPPARASSGGR 32 (118)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~~ 32 (118)
+++++.++++++....+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~ 103 (107)
T 2e0g_A 85 TPQAAVTSNVAAPAQVAQT 103 (107)
T ss_dssp CCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCcchhhccc
Confidence 3444444444443333333
No 4
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.30 E-value=63 Score=21.90 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=8.0
Q ss_pred CCCCccccCCCCC
Q 033508 1 MARNGERVGEISQ 13 (118)
Q Consensus 1 Mar~~~~~~~~~~ 13 (118)
||-|||...-..+
T Consensus 1 ~~~~~~~~~~~~~ 13 (125)
T 1j8c_A 1 MAENGESSGPPRP 13 (125)
T ss_dssp CCCSCCCCCCCSS
T ss_pred CCccCcCCCCCCh
Confidence 7777776644333
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=23.03 E-value=37 Score=20.00 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=15.1
Q ss_pred cccchhhhhHHHHHHHHH
Q 033508 75 DIFDGIFRCYAVVIAFFV 92 (118)
Q Consensus 75 dif~GI~RcYaV~iA~fV 92 (118)
+|-|||+=.|+|++..+.
T Consensus 6 YiLDgiL~iYgii~T~Ly 23 (33)
T 2hac_A 6 YLLDGILFIYGVILTALF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 577999999999987664
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=22.45 E-value=1.5e+02 Score=24.12 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH--HHHHHhhhccCcccccchh-hhhHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHH
Q 033508 50 LTSLTALLCLAV--NVLSAIRSFKNGSDIFDGI-FRCYAVVIAFFVALAETEW---QFVLKFTKVLEYWV 113 (118)
Q Consensus 50 vTa~~AlLCi~v--NvlSavrsf~~~~dif~GI-~RcYaV~iA~fVvlaETEW---~~i~kF~kvLeyW~ 113 (118)
+..+.+.+.+.+ |.+|+--++.+-...+ | .|...+ +...+.++=.-| +.+..|.-.+-||.
T Consensus 304 ~~~~la~i~tn~~~n~ys~~~~l~~~~~~~--i~~~~~~~-i~~vi~~~i~~~~~~~~f~~FL~~lg~~l 370 (501)
T 2jln_A 304 VFVLLATWSTNPAANLLSPAYTLCSTFPRV--FTFKTGVI-VSAVVGLLMMPWQFAGVLNTFLNLLASAL 370 (501)
T ss_dssp HHHHHHHHTTHHHHHTHHHHHHHHHHSTTT--CCHHHHHH-HHHHHHHHTCGGGTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhCccc--cchhHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444444444433 6777766654332221 2 233333 333333333567 56677776665554
No 7
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=21.72 E-value=34 Score=24.97 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=10.5
Q ss_pred HhhhHHHHHHHHH
Q 033508 95 AETEWQFVLKFTK 107 (118)
Q Consensus 95 aETEW~~i~kF~k 107 (118)
-|-||++||+|-.
T Consensus 86 s~~~WdRFMRFMe 98 (120)
T 2kvo_A 86 SQPEWDRFMRFME 98 (120)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3679999999964
No 8
>2k2v_A ALR1010 protein, CCBP; calcium-binding, calcium-binding protein; NMR {Anabaena SP} PDB: 2p0p_A 2p0q_A
Probab=18.18 E-value=34 Score=25.16 Aligned_cols=8 Identities=50% Similarity=1.032 Sum_probs=6.4
Q ss_pred HHHHhccC
Q 033508 110 EYWVARVL 117 (118)
Q Consensus 110 eyW~gRGm 117 (118)
.||++||-
T Consensus 117 ~YW~~rGy 124 (126)
T 2k2v_A 117 LYWLARGY 124 (126)
T ss_dssp HHHHHHTC
T ss_pred HHHHhccc
Confidence 58999984
No 9
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=12.93 E-value=2.2e+02 Score=17.45 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 033508 46 CYSVLTSLTALLCLAVNVLSAIRSFKNGS 74 (118)
Q Consensus 46 ~fs~vTa~~AlLCi~vNvlSavrsf~~~~ 74 (118)
++.+....+++|--+.=|||=+++||..+
T Consensus 16 aigl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 16 AIGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 45566667788888899999999998764
No 10
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=12.74 E-value=76 Score=21.36 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.8
Q ss_pred HHHHHhccCC
Q 033508 109 LEYWVARVLQ 118 (118)
Q Consensus 109 LeyW~gRGm~ 118 (118)
..||++.|-|
T Consensus 56 i~~Wl~~GAq 65 (83)
T 3pys_P 56 ARYWLSVGAQ 65 (83)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHCCCc
Confidence 4677777755
Done!