Query 033508
Match_columns 118
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 04:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033508.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033508hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8ca_ d.15.1.1 (A:) Ubiquiti 23.5 47 0.0034 20.1 3.8 10 1-10 1-10 (103)
2 d1eucb1 c.23.4.1 (B:246-393) S 20.5 24 0.0017 24.2 2.0 23 75-97 79-101 (148)
3 d2nu7b1 c.23.4.1 (B:239-388) S 16.0 34 0.0025 23.3 2.0 23 75-97 79-101 (150)
4 d1wrua2 b.106.1.1 (A:3-176) Ba 16.0 27 0.002 21.9 1.4 15 95-109 144-158 (174)
5 d3d37a1 b.106.1.1 (A:6-178) Ba 15.9 27 0.002 22.4 1.4 14 95-108 143-156 (173)
6 d2gy9p1 d.27.1.1 (P:1-78) Ribo 15.2 20 0.0014 22.3 0.4 10 109-118 57-66 (78)
7 d2uubp1 d.27.1.1 (P:1-83) Ribo 11.0 33 0.0024 21.4 0.6 10 109-118 56-65 (83)
8 d1s12a_ d.64.2.1 (A:) Hypothet 10.8 53 0.0039 20.5 1.6 29 51-81 24-52 (94)
9 d2itba1 a.25.1.7 (A:3-201) Put 9.8 2.6E+02 0.019 19.6 5.4 45 59-117 39-83 (199)
10 d3bn0a1 d.27.1.1 (A:2-102) Rib 8.8 46 0.0034 21.3 0.7 10 109-118 54-63 (101)
No 1
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.53 E-value=47 Score=20.07 Aligned_cols=10 Identities=60% Similarity=0.866 Sum_probs=6.6
Q ss_pred CCCCccccCC
Q 033508 1 MARNGERVGE 10 (118)
Q Consensus 1 Mar~~~~~~~ 10 (118)
|+.+++....
T Consensus 1 m~~~~~ss~p 10 (103)
T d1j8ca_ 1 MAENGESSGP 10 (103)
T ss_dssp CCCSCCCCCC
T ss_pred CCccCccCCC
Confidence 7777777543
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=20.48 E-value=24 Score=24.19 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.0
Q ss_pred cccchhhhhHHHHHHHHHHHHhh
Q 033508 75 DIFDGIFRCYAVVIAFFVALAET 97 (118)
Q Consensus 75 dif~GI~RcYaV~iA~fVvlaET 97 (118)
.||.||.||--|+-++.=++-|.
T Consensus 79 NIfGGI~rcD~vA~GIv~A~~e~ 101 (148)
T d1eucb1 79 NIFGGIVNCAIIANGITKACREL 101 (148)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHH
T ss_pred EeeEeehhHHHHHHHHHHHHHhc
Confidence 69999999999988877666654
No 3
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.02 E-value=34 Score=23.28 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=18.2
Q ss_pred cccchhhhhHHHHHHHHHHHHhh
Q 033508 75 DIFDGIFRCYAVVIAFFVALAET 97 (118)
Q Consensus 75 dif~GI~RcYaV~iA~fVvlaET 97 (118)
.||.||.||--|+=++.=++=|.
T Consensus 79 NifGGI~rcd~vA~GIv~A~k~~ 101 (150)
T d2nu7b1 79 NIFGGIVRCDLIADGIIGAVAEV 101 (150)
T ss_dssp EEESCSSCHHHHHHHHHHHHHHH
T ss_pred EEeeeeehhHHHHHHHHHHHHhc
Confidence 79999999999988776555554
No 4
>d1wrua2 b.106.1.1 (A:3-176) Baseplate protein gpP {Bacteriophage mu [TaxId: 10677]}
Probab=15.96 E-value=27 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=12.4
Q ss_pred HhhhHHHHHHHHHHH
Q 033508 95 AETEWQFVLKFTKVL 109 (118)
Q Consensus 95 aETEW~~i~kF~kvL 109 (118)
-||.|+||.++.+-.
T Consensus 144 ~ESd~~fl~RLa~~~ 158 (174)
T d1wrua2 144 SETVYEALVRASRAR 158 (174)
T ss_dssp TCBHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHC
Confidence 499999999988743
No 5
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=15.89 E-value=27 Score=22.36 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.8
Q ss_pred HhhhHHHHHHHHHH
Q 033508 95 AETEWQFVLKFTKV 108 (118)
Q Consensus 95 aETEW~~i~kF~kv 108 (118)
-||.|+|+.+..+-
T Consensus 143 ~ETd~~fl~Rla~~ 156 (173)
T d3d37a1 143 GETVWQALTHIANS 156 (173)
T ss_dssp TCBHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 39999999998764
No 6
>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}
Probab=15.16 E-value=20 Score=22.30 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=6.7
Q ss_pred HHHHHhccCC
Q 033508 109 LEYWVARVLQ 118 (118)
Q Consensus 109 LeyW~gRGm~ 118 (118)
++||++.|-|
T Consensus 57 i~~Wl~~GAq 66 (78)
T d2gy9p1 57 IAHWVGQGAT 66 (78)
T ss_dssp HHHHTTTTCE
T ss_pred HHHHHHCcCc
Confidence 5677777743
No 7
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=11.00 E-value=33 Score=21.36 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=6.6
Q ss_pred HHHHHhccCC
Q 033508 109 LEYWVARVLQ 118 (118)
Q Consensus 109 LeyW~gRGm~ 118 (118)
++||++.|-|
T Consensus 56 i~~Wl~~GAq 65 (83)
T d2uubp1 56 ARYWLSVGAQ 65 (83)
T ss_dssp HHHHHHHTCE
T ss_pred HHHHHHCCCC
Confidence 4677777744
No 8
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=10.81 E-value=53 Score=20.54 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccccchhh
Q 033508 51 TSLTALLCLAVNVLSAIRSFKNGSDIFDGIF 81 (118)
Q Consensus 51 Ta~~AlLCi~vNvlSavrsf~~~~dif~GI~ 81 (118)
.++++|...++|.|....+.+. ++=+|-+
T Consensus 24 AaVS~l~~~~vN~l~~~~~~~~--~~~~G~l 52 (94)
T d1s12a_ 24 ASVSLLTQHVANFLKAEKKAKI--KKESGYL 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEE--EEETTEE
T ss_pred hhhHHHHHHHHHHHHHHhCCcE--EeeCCEE
Confidence 5677888888998876554432 3435644
No 9
>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}
Probab=9.84 E-value=2.6e+02 Score=19.55 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhccCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Q 033508 59 LAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARVL 117 (118)
Q Consensus 59 i~vNvlSavrsf~~~~dif~GI~RcYaV~iA~fVvlaETEW~~i~kF~kvLeyW~gRGm 117 (118)
.+-|.||.+.+|-+..+ ++.-..-+|.-||+.|-+ |++-=-.||+
T Consensus 39 AA~~Alsli~rYp~~~~-----------Lv~~m~~La~EEL~HF~q---V~~im~~Rgi 83 (199)
T d2itba1 39 AASTALSLIAKYNTHLD-----------LINMMSRLAREELVHHEQ---VLRLMKRRGV 83 (199)
T ss_dssp HHHHHHHHHHHTTTCHH-----------HHHHHHHHHHHHHHHHHH---HHHHHHHTTC
T ss_pred HHHHHHHHHHHCCChHH-----------HHHHHHHHHHHHHHHHHH---HHHHHHHcCC
Confidence 46788999999976554 566677889999986555 4444456776
No 10
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}
Probab=8.79 E-value=46 Score=21.26 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=7.3
Q ss_pred HHHHHhccCC
Q 033508 109 LEYWVARVLQ 118 (118)
Q Consensus 109 LeyW~gRGm~ 118 (118)
++||++.|-|
T Consensus 54 i~~Wl~~GAq 63 (101)
T d3bn0a1 54 VKEWVLKGVE 63 (101)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHcCCC
Confidence 4688888854
Done!