BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033510
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940X7|RBX1A_ARATH RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1
Length = 118
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 110/118 (93%), Positives = 112/118 (94%)
Query: 1 MATLDSDVPMVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60
MATLDSDV M+P GEASSS SSS+KK KRFEIKKWSAVALWAWDIVVDNCAICRNHIM
Sbjct: 1 MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60
Query: 61 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
>sp|Q8QG64|RBX1_SALSA RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2
Length = 108
Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/117 (81%), Positives = 99/117 (84%), Gaps = 11/117 (9%)
Query: 2 ATLDSDVPMVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMD 61
A +D D P SA S +SKK RFE+KKW+AVALWAWDIVVDNCAICRNHIMD
Sbjct: 3 AAMDVDTP---------SATNSGASKK--RFEVKKWNAVALWAWDIVVDNCAICRNHIMD 51
Query: 62 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 52 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>sp|Q9W5E1|RBX1A_DROME RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1
Length = 108
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 94/98 (95%), Gaps = 1/98 (1%)
Query: 22 PSSSSK-KPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 80
PSSSSK KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11 PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70
Query: 81 AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108
>sp|P62878|RBX1_MOUSE E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1
Length = 108
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/109 (82%), Positives = 97/109 (88%), Gaps = 1/109 (0%)
Query: 10 MVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQAN 69
M + + +G +S + K KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQAN
Sbjct: 1 MAAAMDVDTPSGTNSGAGK-KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN 59
Query: 70 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 60 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>sp|P62877|RBX1_HUMAN E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1
Length = 108
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/109 (82%), Positives = 97/109 (88%), Gaps = 1/109 (0%)
Query: 10 MVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQAN 69
M + + +G +S + K KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQAN
Sbjct: 1 MAAAMDVDTPSGTNSGAGK-KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQAN 59
Query: 70 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 60 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108
>sp|Q9M2B0|RBX1B_ARATH RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1
Length = 115
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/118 (86%), Positives = 107/118 (90%), Gaps = 3/118 (2%)
Query: 1 MATLDSDVPMVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60
MA+L+SDV M GE+SS + PSSSSK KRFE+KKWSAVALWAWDIVVDNCAICRNHIM
Sbjct: 1 MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 57
Query: 61 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD EWEFQKYGH
Sbjct: 58 DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115
>sp|Q54K33|RBX1_DICDI RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1
Length = 104
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 91/98 (92%), Gaps = 1/98 (1%)
Query: 21 GPSSSSKKPKR-FEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECT 79
SS+SK PK+ FE+K+W+AVALW WDIVVDNCAICRNHIMDLCIECQANQAS TSEECT
Sbjct: 6 ASSSASKTPKKKFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECT 65
Query: 80 VAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 117
VAWG+CNHAFHFHCISRWLK+RQVCPLDN +WEFQKYG
Sbjct: 66 VAWGICNHAFHFHCISRWLKSRQVCPLDNRDWEFQKYG 103
>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1
Length = 110
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 7/113 (6%)
Query: 6 SDVPMVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIE 65
SD + V EA++ KRFE+KKWSAVALWAWDI VDNCAICRNHIMDLCIE
Sbjct: 5 SDSTAMEVEEATNQT-------VKKRFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIE 57
Query: 66 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
CQANQA+ +ECTVAWG CNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 58 CQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 110
>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pip1 PE=1 SV=2
Length = 107
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/93 (83%), Positives = 83/93 (89%)
Query: 26 SKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC 85
+KP RFEIKKW+AVALW WDIVVDNCAICRNHIMDLCIECQAN SA ++ECTVAWG C
Sbjct: 15 EQKPPRFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTC 74
Query: 86 NHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
NHAFHFHCISRWL TR VCPLDN EWEFQ+YGH
Sbjct: 75 NHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107
>sp|Q9NHX0|RBX1B_DROME RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=2 SV=2
Length = 122
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/103 (66%), Positives = 81/103 (78%), Gaps = 3/103 (2%)
Query: 15 EASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASAT 74
E S S G + + +RF +KKW A A+W WD+ VDNCAICRNHIM+LCIECQA+ +A
Sbjct: 22 EPSCSGGAVQA--RTERFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQAD-PNAN 78
Query: 75 SEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 117
+ECTVAWG CNHAFH+HCI+RWLKTR VCPLDN EW +QKYG
Sbjct: 79 QDECTVAWGECNHAFHYHCIARWLKTRLVCPLDNKEWVYQKYG 121
>sp|Q08273|RBX1_YEAST RING-box protein HRT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HRT1 PE=1 SV=1
Length = 121
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 13 VGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQAS 72
+ ++S+ + P + KK RFEIKKW+AVA W+WDI VDNCAICRNHIM+ CIECQ +
Sbjct: 18 IAQSSNQSAPVETKKK--RFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMT 75
Query: 73 ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
T EC AWGVCNHAFH HCI++W+KTR CPLDN W+ + G
Sbjct: 76 DTDNECVAAWGVCNHAFHLHCINKWIKTRDACPLDNQPWQLARCGR 121
>sp|Q9UBF6|RBX2_HUMAN RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1
Length = 113
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 30 KRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 89
K F +KKW+AVA+W+WD+ D CAICR +MD C+ CQA E+C V WG CNH+F
Sbjct: 28 KMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSF 84
Query: 90 HFHCISRWLKTRQVCPLDNSEWEFQKYG 117
H C+S W+K CPL +W Q+ G
Sbjct: 85 HNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>sp|Q9WTZ1|RBX2_MOUSE RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1
Length = 113
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 30 KRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 89
K F +KKW+AVA+W+WD+ D CAICR +MD C+ CQA E+C V WG CNH+F
Sbjct: 28 KMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSF 84
Query: 90 HFHCISRWLKTRQVCPLDNSEWEFQKYG 117
H C+S W+K CPL +W Q+ G
Sbjct: 85 HNCCMSLWVKQNNRCPLCQQDWVVQRIG 112
>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3
SV=1
Length = 84
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90
R +IK W+ VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 91 FHCISRWLKTRQV---CPLDNSEWEFQK 115
HCI +WL +QV CP+ EW+F++
Sbjct: 57 MHCILKWLNAQQVQQHCPMCRQEWKFKE 84
>sp|Q54L48|APC11_DICDI Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum
GN=anapc11 PE=3 SV=1
Length = 87
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 37 WSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96
W+ V+ W WD+ + C ICR C++C+ ++C WGVCNHAFH HCI +
Sbjct: 9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKI-----PGDDCPPVWGVCNHAFHMHCILK 63
Query: 97 WLKTRQV--CPLDNSEWEFQ 114
WL ++ CP+ SEW F+
Sbjct: 64 WLNANELQQCPMCRSEWRFK 83
>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana
GN=APC11 PE=1 SV=2
Length = 84
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90
+ +I +W AVA W WD + C ICR C +C+ ++C + WG CNHAFH
Sbjct: 2 KVKILRWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFH 56
Query: 91 FHCISRWLKTRQV---CPLDNSEWEFQK 115
HCI +W+ ++ CP+ EW+F++
Sbjct: 57 LHCILKWVNSQTSQAHCPMCRREWQFKE 84
>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11
PE=3 SV=1
Length = 84
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90
+ +IK W+ VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 91 FHCISRWLKTRQV---CPLDNSEWEFQK 115
HCI +WL +QV CP+ EW+F++
Sbjct: 57 MHCILKWLNAQQVQQHCPMCRQEWKFKE 84
>sp|Q5R8A2|APC11_PONAB Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11
PE=3 SV=1
Length = 84
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90
+ +IK W+ VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 91 FHCISRWLKTRQV---CPLDNSEWEFQK 115
HCI +WL +QV CP+ EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>sp|Q9NYG5|APC11_HUMAN Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11
PE=1 SV=1
Length = 84
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90
+ +IK W+ VA W W +NC ICR C +C+ ++C + WG C+H FH
Sbjct: 2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFH 56
Query: 91 FHCISRWLKTRQV---CPLDNSEWEFQK 115
HCI +WL +QV CP+ EW+F++
Sbjct: 57 MHCILKWLHAQQVQQHCPMCRQEWKFKE 84
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNS 109
+CAICR + CIE +++S ++ +C +A V C+H+FH CISRWL T++ CPL N
Sbjct: 73 SCAICRYQENEPCIE---HKSSESNTKCPIAQSVSCSHSFHACCISRWLHTKKTCPLCNI 129
Query: 110 EWEF 113
EW+
Sbjct: 130 EWQL 133
>sp|Q9UT86|APC11_SCHPO Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1
Length = 94
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 31 RFEIKKWSAVALWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 89
+ +I ++ A+A W WD D+ C ICR C +C ++ + C + WG C H F
Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56
Query: 90 HFHCISRWLKT---RQVCPLDNSEW 111
H HCI WL T + CP+D +
Sbjct: 57 HAHCIQNWLATSGSQGQCPMDRQTF 81
>sp|Q12157|APC11_YEAST Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1
Length = 165
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL 106
D C ICR C C+ ++C + G+C+H FH HCI RWL T + +CP+
Sbjct: 39 DVCGICRASYNGTCPSCKF-----PGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPM 93
Query: 107 DNSEWEFQK 115
++ QK
Sbjct: 94 CRQTFQLQK 102
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 10 MVPVGEASSSAGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQAN 69
+V +GEA + S + + KK+ ++++ + C IC+ + E Q N
Sbjct: 155 LVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQ--LKYKIGERQMN 212
Query: 70 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110
C H +H CIS+WL +VCP+ NSE
Sbjct: 213 LP-------------CKHVYHSECISKWLSINKVCPVCNSE 240
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNHAFH CI WLK+ CPL
Sbjct: 161 CNHAFHLPCIDTWLKSHSNCPL 182
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNH FH C+ +WLKT + CP+
Sbjct: 414 CNHEFHAKCVDKWLKTNRTCPI 435
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C H HFHC+ WL+ +Q CP+
Sbjct: 328 CGHILHFHCLRNWLERQQTCPI 349
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 84 VCNHAFHFHCISRWLKTRQVCPL 106
+C+HAFH +CI WL++ CPL
Sbjct: 161 MCSHAFHLNCIDTWLQSNSTCPL 183
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 84 VCNHAFHFHCISRWLKTRQVCPL 106
VC+HAFH HCI WL + CPL
Sbjct: 225 VCSHAFHLHCIDTWLLSNSTCPL 247
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C+H +H HCI RWL CP+
Sbjct: 586 CSHEYHIHCIDRWLSENSTCPI 607
>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana
GN=ATL53 PE=3 SV=2
Length = 310
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 12 PVGEASSSAGPSSSS-KKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 70
P SS+AG + KK F++KK + I +C+IC
Sbjct: 118 PFALESSTAGLDDTLIKKIGFFKLKKHQN----GFKINGTDCSICLGEF----------- 162
Query: 71 ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 106
+E CNH FH CI RWLK+ CPL
Sbjct: 163 ---NEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPL 195
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C+H +H HCI RWL CP+
Sbjct: 588 CSHEYHVHCIDRWLSENSTCPI 609
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C+H +H HCI RWL CP+
Sbjct: 721 CSHEYHIHCIDRWLSENSTCPI 742
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C+H +H HCI RWL CP+
Sbjct: 603 CSHEYHVHCIDRWLSENSTCPI 624
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C+H +H HCI RWL CP+
Sbjct: 564 CSHEYHVHCIDRWLSENSTCPI 585
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C H FH HCI RWL CP+
Sbjct: 650 CMHEFHIHCIDRWLSENCTCPI 671
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNH FH C+ +WLK + CP+
Sbjct: 398 CNHEFHTKCVDKWLKANRTCPI 419
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNHAFH CI WLK+ CPL
Sbjct: 178 CNHAFHVPCIDTWLKSHSNCPL 199
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 16 ASSSAGPSSSSKKPKRFEIKKWSAVALWAWD--IVVDNCAICRNHIMDLCIECQANQASA 73
+S++AG + K+ E+KK+ + + I CAIC D
Sbjct: 67 SSAAAGTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFAD------------ 114
Query: 74 TSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 105
E CNH+FH CI WL + CP
Sbjct: 115 --GERVRVLPPCNHSFHMSCIDTWLVSHSSCP 144
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNH FH C+ +WLK + CP+
Sbjct: 481 CNHEFHAKCVDKWLKANRTCPI 502
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNH FH C+ +WLK + CP+
Sbjct: 373 CNHEFHAKCVDKWLKANRTCPI 394
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 85 CNHAFHFHCISRWLKTRQVCP 105
C+H FH HC+ W + +Q CP
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCP 330
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNHAFH CI WL + CPL
Sbjct: 196 CNHAFHISCIDTWLSSHTNCPL 217
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 85 CNHAFHFHCISRWLKTRQVCPLDN 108
C HAFH C+ +WL+ R+VCPL N
Sbjct: 96 CKHAFHRKCLVKWLEVRKVCPLCN 119
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 85 CNHAFHFHCISRWLKTRQVCP 105
C+H FH HC+ W + +Q CP
Sbjct: 310 CSHVFHAHCLRSWFQRQQTCP 330
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
C H FH HCI RWL CP+
Sbjct: 632 CLHEFHIHCIDRWLSENCTCPV 653
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 106
CAIC N D EE C+HAFH CI WL +R CP+
Sbjct: 128 CAICLNEFED--------------EETLRLMPPCSHAFHASCIDVWLSSRSTCPV 168
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 61 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 106
D+C C + SA C+ H FH C+ +WL ++ CPL
Sbjct: 535 DICAICYQDMKSAVITPCS-------HFFHAGCLKKWLYVQETCPL 573
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 85 CNHAFHFHCISRWLKTRQVCPLDN 108
C HAFH C+ +WL+ R+VCPL N
Sbjct: 96 CKHAFHRKCLIKWLEVRKVCPLCN 119
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNH FH CI +WLK R CPL
Sbjct: 325 CNHHFHSTCIVKWLKMRATCPL 346
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 85 CNHAFHFHCISRWLKTRQVCPL 106
CNH FH C+ +WLK + CP+
Sbjct: 484 CNHEFHAKCVDKWLKGNRTCPI 505
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.129 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,192,683
Number of Sequences: 539616
Number of extensions: 1507587
Number of successful extensions: 3929
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 3614
Number of HSP's gapped (non-prelim): 354
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)