Query 033510
Match_columns 118
No_of_seqs 176 out of 1417
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:07:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2930 SCF ubiquitin ligase, 100.0 2.7E-33 5.9E-38 185.7 6.3 98 20-118 17-114 (114)
2 COG5194 APC11 Component of SCF 100.0 6.7E-29 1.5E-33 157.9 5.0 87 30-118 1-87 (88)
3 PF12861 zf-Apc11: Anaphase-pr 99.9 7.7E-26 1.7E-30 146.3 4.7 81 30-115 1-85 (85)
4 PF12678 zf-rbx1: RING-H2 zinc 99.9 3.6E-25 7.8E-30 140.3 5.3 73 31-108 1-73 (73)
5 KOG1493 Anaphase-promoting com 99.9 7.8E-24 1.7E-28 133.7 1.0 81 30-115 1-84 (84)
6 PF13639 zf-RING_2: Ring finge 99.7 5.4E-17 1.2E-21 93.0 2.4 44 50-108 1-44 (44)
7 KOG4628 Predicted E3 ubiquitin 99.5 1.5E-14 3.2E-19 114.5 2.4 47 50-111 230-277 (348)
8 COG5243 HRD1 HRD ubiquitin lig 99.4 1.3E-13 2.7E-18 109.7 3.2 62 47-113 285-346 (491)
9 PHA02929 N1R/p28-like protein; 99.4 2.4E-13 5.2E-18 103.1 3.9 57 48-114 173-229 (238)
10 PF13920 zf-C3HC4_3: Zinc fing 99.2 5.4E-12 1.2E-16 74.0 3.1 46 49-112 2-48 (50)
11 cd00162 RING RING-finger (Real 99.2 1E-11 2.2E-16 69.4 3.6 44 51-111 1-45 (45)
12 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.3E-11 2.9E-16 68.8 2.8 39 52-107 1-39 (39)
13 COG5540 RING-finger-containing 99.2 1.1E-11 2.5E-16 96.4 3.1 47 50-111 324-371 (374)
14 PHA02926 zinc finger-like prot 99.1 3.1E-11 6.6E-16 90.5 3.7 61 48-117 169-235 (242)
15 KOG0317 Predicted E3 ubiquitin 99.1 4.9E-11 1.1E-15 92.0 3.5 53 47-117 237-289 (293)
16 PF15227 zf-C3HC4_4: zinc fing 99.1 7E-11 1.5E-15 67.3 3.2 38 52-107 1-42 (42)
17 PLN03208 E3 ubiquitin-protein 99.1 7.2E-11 1.6E-15 87.0 3.9 50 48-115 17-82 (193)
18 KOG0802 E3 ubiquitin ligase [P 99.1 3.9E-11 8.5E-16 100.0 1.9 50 48-110 290-339 (543)
19 smart00184 RING Ring finger. E 99.0 2.1E-10 4.5E-15 61.8 3.0 38 52-107 1-39 (39)
20 PF00097 zf-C3HC4: Zinc finger 99.0 2.1E-10 4.5E-15 64.2 2.9 39 52-107 1-41 (41)
21 smart00504 Ubox Modified RING 99.0 2.5E-10 5.5E-15 69.1 3.4 47 51-115 3-49 (63)
22 KOG0320 Predicted E3 ubiquitin 99.0 6.8E-10 1.5E-14 80.7 4.4 53 48-116 130-182 (187)
23 KOG0823 Predicted E3 ubiquitin 99.0 7.8E-10 1.7E-14 83.1 4.5 52 47-116 45-99 (230)
24 PF14634 zf-RING_5: zinc-RING 98.9 1E-09 2.2E-14 62.8 3.2 44 51-109 1-44 (44)
25 TIGR00599 rad18 DNA repair pro 98.8 2E-09 4.4E-14 86.9 3.5 50 49-116 26-75 (397)
26 KOG1734 Predicted RING-contain 98.8 1.1E-09 2.4E-14 84.2 -0.3 65 45-117 220-286 (328)
27 PF13445 zf-RING_UBOX: RING-ty 98.6 2.8E-08 6E-13 56.9 2.8 34 52-100 1-34 (43)
28 PF11793 FANCL_C: FANCL C-term 98.6 8.2E-09 1.8E-13 64.7 -0.3 52 50-114 3-68 (70)
29 KOG0828 Predicted E3 ubiquitin 98.6 1.9E-08 4.1E-13 82.8 1.5 59 50-111 572-633 (636)
30 COG5432 RAD18 RING-finger-cont 98.5 3.8E-08 8.3E-13 76.7 2.1 49 50-116 26-74 (391)
31 COG5574 PEX10 RING-finger-cont 98.5 3.9E-08 8.5E-13 75.3 2.0 51 48-116 214-266 (271)
32 KOG0287 Postreplication repair 98.5 2.8E-08 6.2E-13 78.7 1.2 46 50-113 24-69 (442)
33 COG5219 Uncharacterized conser 98.5 4.7E-08 1E-12 85.5 2.0 54 49-113 1469-1524(1525)
34 smart00744 RINGv The RING-vari 98.5 1.5E-07 3.2E-12 55.2 2.9 29 80-108 14-49 (49)
35 KOG0827 Predicted E3 ubiquitin 98.5 6.7E-08 1.5E-12 77.6 1.8 45 50-108 5-52 (465)
36 PF04564 U-box: U-box domain; 98.4 2.2E-07 4.8E-12 58.4 3.3 47 50-114 5-52 (73)
37 TIGR00570 cdk7 CDK-activating 98.4 4.1E-07 9E-12 71.4 4.0 54 49-115 3-57 (309)
38 KOG2164 Predicted E3 ubiquitin 98.3 3E-07 6.4E-12 75.9 2.4 49 49-115 186-239 (513)
39 KOG2177 Predicted E3 ubiquitin 98.2 4.6E-07 1E-11 66.9 1.7 43 48-108 12-54 (386)
40 KOG0804 Cytoplasmic Zn-finger 98.2 5.4E-07 1.2E-11 73.4 1.4 47 47-109 173-219 (493)
41 PF14835 zf-RING_6: zf-RING of 98.2 3.7E-07 8.1E-12 56.3 -0.1 48 50-116 8-55 (65)
42 KOG0824 Predicted E3 ubiquitin 98.0 2.8E-06 6.1E-11 66.4 1.5 47 48-112 6-53 (324)
43 KOG1645 RING-finger-containing 97.9 8.8E-06 1.9E-10 65.9 2.6 49 49-110 4-54 (463)
44 KOG1039 Predicted E3 ubiquitin 97.8 9.1E-06 2E-10 64.8 2.5 56 48-113 160-222 (344)
45 KOG0825 PHD Zn-finger protein 97.8 4.1E-06 8.9E-11 72.4 0.3 33 81-113 140-172 (1134)
46 KOG4265 Predicted E3 ubiquitin 97.8 1.7E-05 3.6E-10 63.2 2.8 46 49-112 290-336 (349)
47 KOG0978 E3 ubiquitin ligase in 97.7 1.2E-05 2.5E-10 69.0 1.4 49 50-116 644-693 (698)
48 KOG4172 Predicted E3 ubiquitin 97.6 1.8E-05 3.9E-10 47.4 0.1 45 50-112 8-54 (62)
49 KOG0311 Predicted E3 ubiquitin 97.5 1.2E-05 2.5E-10 64.1 -1.1 47 49-112 43-90 (381)
50 KOG4445 Uncharacterized conser 97.5 3E-05 6.4E-10 60.9 0.5 54 47-115 113-189 (368)
51 KOG1941 Acetylcholine receptor 97.5 3.8E-05 8.3E-10 62.2 0.7 46 50-109 366-413 (518)
52 PF11789 zf-Nse: Zinc-finger o 97.4 8.1E-05 1.8E-09 44.9 1.6 42 48-106 10-53 (57)
53 KOG0297 TNF receptor-associate 97.4 7.6E-05 1.6E-09 60.5 1.4 49 48-113 20-68 (391)
54 PHA02862 5L protein; Provision 97.3 0.0002 4.3E-09 50.8 2.4 51 49-116 2-57 (156)
55 KOG4159 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 58.7 2.0 47 48-112 83-129 (398)
56 PHA02825 LAP/PHD finger-like p 97.2 0.00029 6.3E-09 50.6 3.0 53 47-116 6-63 (162)
57 KOG1785 Tyrosine kinase negati 97.1 0.00017 3.7E-09 58.7 1.0 46 49-112 369-416 (563)
58 KOG1428 Inhibitor of type V ad 97.0 0.00039 8.4E-09 64.1 2.4 50 48-112 3485-3544(3738)
59 KOG3268 Predicted E3 ubiquitin 96.9 0.00092 2E-08 49.2 3.4 34 83-116 188-232 (234)
60 PF10367 Vps39_2: Vacuolar sor 96.9 0.00035 7.5E-09 45.8 0.9 32 48-95 77-108 (109)
61 COG5152 Uncharacterized conser 96.9 0.00033 7.2E-09 52.3 0.8 42 51-110 198-239 (259)
62 PF14570 zf-RING_4: RING/Ubox 96.8 0.00097 2.1E-08 38.9 2.2 47 52-112 1-48 (48)
63 KOG2114 Vacuolar assembly/sort 96.8 0.00056 1.2E-08 59.8 1.4 41 50-110 841-881 (933)
64 KOG4185 Predicted E3 ubiquitin 96.7 0.0011 2.4E-08 51.2 2.5 51 50-112 4-55 (296)
65 KOG1813 Predicted E3 ubiquitin 96.7 0.00058 1.3E-08 53.4 0.6 43 50-110 242-284 (313)
66 KOG1002 Nucleotide excision re 96.6 0.00091 2E-08 56.3 1.5 47 48-112 535-586 (791)
67 PF12906 RINGv: RING-variant d 96.6 0.00096 2.1E-08 38.6 1.1 40 52-107 1-47 (47)
68 KOG3039 Uncharacterized conser 96.5 0.0042 9E-08 47.8 4.5 75 28-116 189-274 (303)
69 COG5236 Uncharacterized conser 96.5 0.0019 4.1E-08 51.9 2.8 51 46-114 58-110 (493)
70 PHA03096 p28-like protein; Pro 96.5 0.0015 3.3E-08 51.0 2.2 50 50-109 179-231 (284)
71 KOG2879 Predicted E3 ubiquitin 96.5 0.0028 6E-08 49.3 3.1 48 48-112 238-287 (298)
72 KOG2660 Locus-specific chromos 96.4 0.0006 1.3E-08 53.9 -0.9 44 50-110 16-59 (331)
73 PF08746 zf-RING-like: RING-li 96.3 0.0022 4.9E-08 36.4 1.4 24 84-107 18-43 (43)
74 PF05883 Baculo_RING: Baculovi 96.2 0.0023 5E-08 44.8 1.4 39 46-99 23-67 (134)
75 COG5175 MOT2 Transcriptional r 96.0 0.0041 9E-08 49.9 2.0 58 46-117 11-69 (480)
76 KOG1952 Transcription factor N 95.9 0.0035 7.7E-08 55.0 1.4 46 50-109 192-244 (950)
77 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.0095 2.1E-07 45.7 3.4 53 49-116 113-165 (260)
78 PF14447 Prok-RING_4: Prokaryo 95.8 0.0043 9.4E-08 37.1 1.0 34 80-115 20-53 (55)
79 KOG0827 Predicted E3 ubiquitin 95.7 0.0018 3.9E-08 52.6 -1.0 50 49-112 196-245 (465)
80 KOG4692 Predicted E3 ubiquitin 95.5 0.0086 1.9E-07 48.4 2.1 49 46-112 419-467 (489)
81 KOG4739 Uncharacterized protei 95.4 0.0061 1.3E-07 46.4 1.0 37 79-117 17-53 (233)
82 KOG2034 Vacuolar sorting prote 95.2 0.0094 2E-07 52.6 1.4 37 47-99 815-851 (911)
83 KOG1940 Zn-finger protein [Gen 95.1 0.012 2.6E-07 45.9 1.8 31 79-109 174-204 (276)
84 KOG0309 Conserved WD40 repeat- 94.9 0.014 3E-07 51.1 1.8 26 81-106 1044-1069(1081)
85 KOG1571 Predicted E3 ubiquitin 94.8 0.02 4.3E-07 45.9 2.3 43 48-111 304-346 (355)
86 KOG4275 Predicted E3 ubiquitin 94.6 0.0097 2.1E-07 46.8 0.1 41 49-111 300-341 (350)
87 KOG3970 Predicted E3 ubiquitin 94.5 0.031 6.6E-07 42.7 2.6 46 50-111 51-104 (299)
88 KOG1814 Predicted E3 ubiquitin 94.5 0.023 5.1E-07 46.4 2.1 44 50-108 185-236 (445)
89 COG5183 SSM4 Protein involved 93.3 0.061 1.3E-06 47.6 2.5 53 48-116 11-70 (1175)
90 KOG0801 Predicted E3 ubiquitin 93.1 0.028 6.1E-07 40.9 0.1 28 49-91 177-204 (205)
91 PF14446 Prok-RING_1: Prokaryo 92.4 0.22 4.7E-06 29.7 3.2 48 48-113 4-53 (54)
92 KOG4718 Non-SMC (structural ma 92.3 0.087 1.9E-06 39.7 1.8 46 50-112 182-227 (235)
93 KOG1001 Helicase-like transcri 92.2 0.042 9.1E-07 47.6 0.1 44 50-112 455-500 (674)
94 KOG0826 Predicted E3 ubiquitin 91.9 0.08 1.7E-06 42.3 1.3 52 48-116 299-350 (357)
95 PF10272 Tmpp129: Putative tra 91.6 0.12 2.6E-06 41.7 2.0 31 85-115 311-354 (358)
96 PF13901 DUF4206: Domain of un 91.2 0.085 1.8E-06 39.1 0.8 53 51-109 144-197 (202)
97 COG5222 Uncharacterized conser 90.9 0.15 3.2E-06 40.6 1.8 43 50-109 275-318 (427)
98 KOG0298 DEAD box-containing he 90.1 0.091 2E-06 48.3 0.1 43 50-109 1154-1196(1394)
99 KOG3053 Uncharacterized conser 89.6 0.15 3.4E-06 39.5 1.0 55 47-113 18-83 (293)
100 PF07800 DUF1644: Protein of u 89.5 0.37 8.1E-06 34.8 2.8 15 85-99 32-47 (162)
101 KOG3899 Uncharacterized conser 88.8 0.24 5.2E-06 39.2 1.6 31 85-115 325-368 (381)
102 KOG1812 Predicted E3 ubiquitin 88.6 0.23 4.9E-06 40.4 1.3 39 48-100 145-183 (384)
103 KOG1812 Predicted E3 ubiquitin 87.3 0.31 6.7E-06 39.6 1.4 46 50-108 307-352 (384)
104 KOG2817 Predicted E3 ubiquitin 87.1 0.56 1.2E-05 38.3 2.7 52 49-115 334-388 (394)
105 KOG2932 E3 ubiquitin ligase in 87.0 0.3 6.6E-06 38.9 1.1 28 81-110 105-132 (389)
106 KOG3161 Predicted E3 ubiquitin 86.5 0.29 6.3E-06 42.5 0.9 47 50-112 12-58 (861)
107 KOG1829 Uncharacterized conser 86.3 0.11 2.3E-06 44.4 -1.8 61 52-116 504-565 (580)
108 PF05290 Baculo_IE-1: Baculovi 85.5 0.71 1.5E-05 32.5 2.2 52 50-115 81-135 (140)
109 KOG1609 Protein involved in mR 85.3 0.46 1E-05 36.4 1.4 50 49-112 78-134 (323)
110 KOG3800 Predicted E3 ubiquitin 85.0 0.99 2.1E-05 35.5 3.1 33 80-112 18-51 (300)
111 PF03854 zf-P11: P-11 zinc fin 84.4 0.4 8.7E-06 27.9 0.5 29 83-111 16-45 (50)
112 KOG1100 Predicted E3 ubiquitin 83.6 0.7 1.5E-05 34.5 1.7 28 79-110 170-198 (207)
113 KOG3002 Zn finger protein [Gen 83.0 0.88 1.9E-05 35.9 2.1 45 48-112 47-91 (299)
114 KOG4367 Predicted Zn-finger pr 82.6 0.67 1.4E-05 38.8 1.3 35 48-100 3-37 (699)
115 KOG3113 Uncharacterized conser 80.8 1.9 4.1E-05 33.6 3.1 50 51-116 113-162 (293)
116 KOG0802 E3 ubiquitin ligase [P 80.6 1.3 2.9E-05 37.3 2.5 46 48-115 478-523 (543)
117 PF02891 zf-MIZ: MIZ/SP-RING z 80.2 1.8 4E-05 25.0 2.3 42 51-110 4-50 (50)
118 KOG4362 Transcriptional regula 78.4 0.46 9.9E-06 41.3 -1.0 47 49-113 21-70 (684)
119 KOG2066 Vacuolar assembly/sort 78.1 0.79 1.7E-05 40.5 0.3 47 49-107 784-830 (846)
120 KOG0269 WD40 repeat-containing 77.4 2.2 4.7E-05 37.8 2.8 41 50-106 780-820 (839)
121 smart00249 PHD PHD zinc finger 77.0 1.8 3.9E-05 23.2 1.5 17 80-96 15-31 (47)
122 PF14569 zf-UDP: Zinc-binding 76.5 3.7 8.1E-05 26.3 3.0 55 47-112 7-62 (80)
123 PF00628 PHD: PHD-finger; Int 74.2 1.6 3.6E-05 24.6 0.9 32 77-108 12-49 (51)
124 PF04710 Pellino: Pellino; In 73.8 1.1 2.3E-05 36.9 0.0 32 76-110 300-337 (416)
125 smart00132 LIM Zinc-binding do 72.8 2.4 5.3E-05 21.8 1.3 19 85-111 19-37 (39)
126 KOG1815 Predicted E3 ubiquitin 71.1 2.6 5.7E-05 34.7 1.7 36 48-100 69-104 (444)
127 KOG3005 GIY-YIG type nuclease 70.7 5.2 0.00011 31.3 3.1 48 49-109 182-240 (276)
128 PF04423 Rad50_zn_hook: Rad50 70.5 1.4 3E-05 25.7 -0.0 13 101-113 20-32 (54)
129 KOG3039 Uncharacterized conser 69.4 3.2 7E-05 32.3 1.8 33 50-100 44-76 (303)
130 PF06844 DUF1244: Protein of u 69.2 3 6.5E-05 25.8 1.3 13 88-100 11-23 (68)
131 PF13717 zinc_ribbon_4: zinc-r 68.8 3 6.6E-05 22.4 1.1 33 51-90 4-36 (36)
132 KOG2231 Predicted E3 ubiquitin 67.2 4.4 9.6E-05 35.4 2.4 48 51-116 2-56 (669)
133 COG5220 TFB3 Cdk activating ki 65.1 2.2 4.7E-05 33.1 0.1 50 48-109 9-61 (314)
134 PF01363 FYVE: FYVE zinc finge 63.7 2.7 5.9E-05 25.2 0.3 42 43-98 3-44 (69)
135 COG5109 Uncharacterized conser 61.7 6.3 0.00014 31.7 2.1 40 76-115 348-390 (396)
136 KOG0825 PHD Zn-finger protein 60.4 5.4 0.00012 35.8 1.6 50 49-109 96-151 (1134)
137 PLN02189 cellulose synthase 59.7 11 0.00024 34.6 3.5 54 48-112 33-87 (1040)
138 KOG2068 MOT2 transcription fac 59.5 7.5 0.00016 31.2 2.2 49 50-112 250-298 (327)
139 PF13719 zinc_ribbon_5: zinc-r 59.2 5.4 0.00012 21.5 1.0 33 51-90 4-36 (37)
140 cd00350 rubredoxin_like Rubred 57.8 6.5 0.00014 20.6 1.1 20 84-109 6-25 (33)
141 PF13913 zf-C2HC_2: zinc-finge 56.9 2 4.3E-05 21.3 -0.9 14 103-116 4-17 (25)
142 PF00412 LIM: LIM domain; Int 55.4 4.9 0.00011 22.9 0.4 23 83-113 16-38 (58)
143 PLN02638 cellulose synthase A 54.8 15 0.00033 33.8 3.6 54 48-112 16-70 (1079)
144 PF13832 zf-HC5HC2H_2: PHD-zin 53.8 6.6 0.00014 25.7 0.9 34 49-97 55-88 (110)
145 smart00647 IBR In Between Ring 53.1 2.3 5E-05 24.8 -1.3 18 80-97 40-58 (64)
146 smart00064 FYVE Protein presen 52.5 12 0.00025 22.3 1.8 41 46-100 7-47 (68)
147 KOG3579 Predicted E3 ubiquitin 50.4 6 0.00013 31.4 0.3 37 50-100 269-305 (352)
148 PLN02400 cellulose synthase 49.7 16 0.00035 33.7 2.9 55 47-112 34-89 (1085)
149 PLN02436 cellulose synthase A 49.6 21 0.00045 33.1 3.6 55 47-112 34-89 (1094)
150 PF14311 DUF4379: Domain of un 48.4 12 0.00027 21.5 1.4 24 83-107 32-55 (55)
151 TIGR00622 ssl1 transcription f 47.3 23 0.00049 24.1 2.7 56 49-108 55-110 (112)
152 PRK05978 hypothetical protein; 47.1 10 0.00022 27.0 1.0 20 96-115 47-66 (148)
153 KOG3842 Adaptor protein Pellin 46.1 10 0.00022 30.6 1.0 53 51-110 292-350 (429)
154 KOG4021 Mitochondrial ribosoma 45.6 12 0.00027 28.1 1.3 27 91-117 97-124 (239)
155 PF09723 Zn-ribbon_8: Zinc rib 45.3 5.4 0.00012 22.0 -0.5 26 83-109 9-34 (42)
156 PF02318 FYVE_2: FYVE-type zin 43.4 14 0.0003 24.8 1.2 48 48-109 53-102 (118)
157 KOG1815 Predicted E3 ubiquitin 43.2 7.2 0.00016 32.1 -0.3 38 50-100 227-267 (444)
158 KOG2071 mRNA cleavage and poly 43.2 12 0.00026 32.3 1.0 47 47-98 511-557 (579)
159 KOG4185 Predicted E3 ubiquitin 42.2 4.9 0.00011 30.9 -1.3 49 49-109 207-264 (296)
160 COG3492 Uncharacterized protei 41.9 13 0.00029 24.5 0.9 13 88-100 42-54 (104)
161 KOG0824 Predicted E3 ubiquitin 41.0 9.2 0.0002 30.5 0.1 48 48-112 104-151 (324)
162 PLN02195 cellulose synthase A 41.0 38 0.00083 31.1 3.9 52 49-112 6-59 (977)
163 PF13771 zf-HC5HC2H: PHD-like 40.2 24 0.00053 21.9 2.0 34 48-96 35-68 (90)
164 KOG2979 Protein involved in DN 39.8 16 0.00034 28.4 1.2 43 50-109 177-221 (262)
165 smart00734 ZnF_Rad18 Rad18-lik 39.8 11 0.00024 18.7 0.2 10 103-112 3-12 (26)
166 PF07191 zinc-ribbons_6: zinc- 37.7 3.1 6.7E-05 26.1 -2.5 27 86-113 16-42 (70)
167 PRK11827 hypothetical protein; 36.7 12 0.00027 22.6 0.1 20 95-114 2-21 (60)
168 PLN02915 cellulose synthase A 36.7 47 0.001 30.8 3.7 54 48-112 14-68 (1044)
169 PF14169 YdjO: Cold-inducible 36.7 18 0.00039 21.9 0.8 12 101-112 39-50 (59)
170 KOG1701 Focal adhesion adaptor 36.1 4.3 9.3E-05 33.7 -2.5 14 81-94 348-361 (468)
171 PF10013 DUF2256: Uncharacteri 35.6 21 0.00046 20.1 1.0 12 101-112 8-19 (42)
172 PRK01343 zinc-binding protein; 35.3 23 0.00049 21.3 1.1 12 101-112 9-20 (57)
173 COG5627 MMS21 DNA repair prote 35.1 22 0.00048 27.5 1.3 41 49-106 189-231 (275)
174 KOG0956 PHD finger protein AF1 34.2 15 0.00032 32.6 0.2 55 49-112 117-182 (900)
175 PF10235 Cript: Microtubule-as 34.2 48 0.0011 21.7 2.6 36 49-111 44-79 (90)
176 cd00065 FYVE FYVE domain; Zinc 34.0 28 0.0006 19.7 1.4 36 50-99 3-38 (57)
177 PF15353 HECA: Headcase protei 33.9 27 0.00058 23.6 1.4 18 83-100 38-55 (107)
178 PF00130 C1_1: Phorbol esters/ 33.3 46 0.001 18.5 2.2 35 49-96 11-45 (53)
179 PF13240 zinc_ribbon_2: zinc-r 32.1 7.2 0.00016 18.9 -1.2 7 103-109 15-21 (23)
180 COG4338 Uncharacterized protei 31.9 16 0.00035 21.3 0.1 13 101-113 12-24 (54)
181 PF14369 zf-RING_3: zinc-finge 31.9 25 0.00054 18.7 0.8 9 103-111 23-31 (35)
182 KOG1512 PHD Zn-finger protein 31.5 19 0.00042 28.7 0.5 41 47-96 256-296 (381)
183 PF14353 CpXC: CpXC protein 30.9 38 0.00082 22.7 1.8 12 102-113 39-50 (128)
184 KOG1245 Chromatin remodeling c 30.5 16 0.00035 34.7 -0.1 61 37-112 1096-1160(1404)
185 PF10497 zf-4CXXC_R1: Zinc-fin 30.3 40 0.00086 22.4 1.8 24 86-109 37-69 (105)
186 PF07649 C1_3: C1-like domain; 30.3 49 0.0011 16.5 1.8 14 81-94 17-30 (30)
187 PF01485 IBR: IBR domain; Int 30.2 5.6 0.00012 23.0 -2.2 15 83-97 44-58 (64)
188 KOG4443 Putative transcription 29.8 35 0.00076 30.0 1.8 30 80-109 36-70 (694)
189 PF07975 C1_4: TFIIH C1-like d 29.6 48 0.001 19.3 1.8 28 80-108 22-50 (51)
190 COG3813 Uncharacterized protei 29.5 56 0.0012 20.7 2.2 28 83-112 25-52 (84)
191 KOG2807 RNA polymerase II tran 29.3 42 0.0009 27.2 2.0 45 49-108 330-374 (378)
192 PF05605 zf-Di19: Drought indu 28.5 22 0.00048 20.4 0.3 12 102-113 3-14 (54)
193 PF10071 DUF2310: Zn-ribbon-co 27.6 35 0.00076 26.5 1.3 15 101-115 220-234 (258)
194 COG4357 Zinc finger domain con 27.5 50 0.0011 22.1 1.8 28 85-113 65-92 (105)
195 COG3357 Predicted transcriptio 27.0 19 0.00042 23.8 -0.2 26 83-112 62-87 (97)
196 COG4847 Uncharacterized protei 25.6 54 0.0012 21.8 1.7 33 51-99 8-40 (103)
197 PF06906 DUF1272: Protein of u 24.1 1.2E+02 0.0025 18.2 2.8 24 87-112 29-52 (57)
198 TIGR02098 MJ0042_CXXC MJ0042 f 24.1 28 0.0006 18.3 0.1 12 103-114 4-15 (38)
199 COG5595 Zn-ribbon-containing, 24.1 35 0.00075 25.8 0.7 14 102-115 219-232 (256)
200 PF13894 zf-C2H2_4: C2H2-type 23.5 31 0.00066 15.4 0.2 10 103-112 2-11 (24)
201 PF06937 EURL: EURL protein; 22.9 64 0.0014 25.4 1.9 19 88-106 56-75 (285)
202 KOG1701 Focal adhesion adaptor 22.7 51 0.0011 27.6 1.4 34 50-94 395-428 (468)
203 cd00029 C1 Protein kinase C co 22.6 49 0.0011 17.9 1.0 35 49-96 11-45 (50)
204 TIGR02367 PylS pyrrolysyl-tRNA 22.6 30 0.00065 29.0 0.1 23 94-116 55-81 (453)
205 TIGR02605 CxxC_CxxC_SSSS putat 22.2 32 0.00069 19.3 0.1 26 83-109 9-34 (52)
206 PF09538 FYDLN_acid: Protein o 21.7 43 0.00093 22.5 0.7 12 103-114 28-39 (108)
207 PRK00418 DNA gyrase inhibitor; 21.4 50 0.0011 20.1 0.9 12 101-112 6-17 (62)
208 PF09943 DUF2175: Uncharacteri 21.3 79 0.0017 21.1 1.9 33 51-99 4-36 (101)
209 PF06677 Auto_anti-p27: Sjogre 21.2 66 0.0014 17.8 1.3 18 94-111 10-27 (41)
210 KOG4323 Polycomb-like PHD Zn-f 20.8 1.6E+02 0.0034 25.0 3.9 50 48-110 167-224 (464)
211 COG4647 AcxC Acetone carboxyla 20.8 51 0.0011 23.3 0.9 13 80-92 70-82 (165)
212 PF03884 DUF329: Domain of unk 20.5 34 0.00073 20.5 0.0 11 103-113 4-14 (57)
No 1
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=185.73 Aligned_cols=98 Identities=86% Similarity=1.568 Sum_probs=91.5
Q ss_pred CCCCCCCCCCcceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 20 AGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
.+.++.....++|.+|+|+++++|+||+..|+|+||++.+.++|++|++++ +.+.++|.+.++.|+|.||.+||.+||+
T Consensus 17 ~~~~s~~~~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~-~~~~~EC~VaWG~CNHaFH~hCisrWlk 95 (114)
T KOG2930|consen 17 KSSSSNEGGKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ-SATSEECTVAWGVCNHAFHFHCISRWLK 95 (114)
T ss_pred cccccCCCCCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCC-CCCCCceEEEeeecchHHHHHHHHHHHh
Confidence 334445555899999999999999999999999999999999999999998 8889999999999999999999999999
Q ss_pred CCCCCcCCccCccccccCC
Q 033510 100 TRQVCPLDNSEWEFQKYGH 118 (118)
Q Consensus 100 ~~~~CP~Cr~~~~~~~~~~ 118 (118)
+++.||+|.++|+|++||+
T Consensus 96 tr~vCPLdn~eW~~qr~g~ 114 (114)
T KOG2930|consen 96 TRNVCPLDNKEWVFQRYGH 114 (114)
T ss_pred hcCcCCCcCcceeEeecCC
Confidence 9999999999999999986
No 2
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.95 E-value=6.7e-29 Score=157.91 Aligned_cols=87 Identities=60% Similarity=1.263 Sum_probs=81.8
Q ss_pred cceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 30 KRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 30 ~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
++++|++|.++++|+|++..|+|+||++.|.++|++|+.+- .++++|+++++.|+|.||.|||.+||.+++.||++|+
T Consensus 1 ~kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~--~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q 78 (88)
T COG5194 1 MKVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGM--TPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQ 78 (88)
T ss_pred CceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCC--CCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCc
Confidence 57999999999999999999999999999999999998753 6788999999999999999999999999999999999
Q ss_pred CccccccCC
Q 033510 110 EWEFQKYGH 118 (118)
Q Consensus 110 ~~~~~~~~~ 118 (118)
+|++++.++
T Consensus 79 ~w~~~~~~~ 87 (88)
T COG5194 79 TWVLADGGA 87 (88)
T ss_pred eeEEecccC
Confidence 999998764
No 3
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.92 E-value=7.7e-26 Score=146.30 Aligned_cols=81 Identities=41% Similarity=1.114 Sum_probs=73.7
Q ss_pred cceeEeeceeeeeeecCC-CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCc
Q 033510 30 KRFEIKKWSAVALWAWDI-VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCP 105 (118)
Q Consensus 30 ~~~~i~~~~~~~~~~~~~-~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP 105 (118)
++++|+.|++|+.|.|++ .++.|.||+..|...|++|.- |++.++++++.|+|.||.+||.+||.+ +++||
T Consensus 1 mkv~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~-----Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CP 75 (85)
T PF12861_consen 1 MKVKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKF-----PGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCP 75 (85)
T ss_pred CeeEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccC-----CCCCCceeeccCccHHHHHHHHHHHccccCCCCCC
Confidence 478999999999999985 689999999999998888754 689999999999999999999999996 57899
Q ss_pred CCccCccccc
Q 033510 106 LDNSEWEFQK 115 (118)
Q Consensus 106 ~Cr~~~~~~~ 115 (118)
+||++|++++
T Consensus 76 mCR~~w~~k~ 85 (85)
T PF12861_consen 76 MCRQPWKFKE 85 (85)
T ss_pred CcCCeeeeCC
Confidence 9999999875
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.91 E-value=3.6e-25 Score=140.28 Aligned_cols=73 Identities=63% Similarity=1.393 Sum_probs=66.3
Q ss_pred ceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCc
Q 033510 31 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 108 (118)
Q Consensus 31 ~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 108 (118)
+|+|++|++++.|+|+..++.|+||++.|.+++++++.++ +++.++++.|||.||.+||.+||+.+.+||+||
T Consensus 1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~-----~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQ-----DECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCT-----TTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCc-----cccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999999999999999999999998864 456788899999999999999999999999997
No 5
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.8e-24 Score=133.70 Aligned_cols=81 Identities=40% Similarity=1.061 Sum_probs=75.1
Q ss_pred cceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCcC
Q 033510 30 KRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL 106 (118)
Q Consensus 30 ~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~ 106 (118)
++++|+.+..++.|.|+..+++|.||+..|...|++|.. |++.|+++++.|.|.||.+||.+|+.. +..||+
T Consensus 1 Mkvki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~-----PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPm 75 (84)
T KOG1493|consen 1 MKVKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKL-----PGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPM 75 (84)
T ss_pred CceEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcC-----CCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCc
Confidence 468999999999999999999999999999999999976 689999999999999999999999986 567999
Q ss_pred CccCccccc
Q 033510 107 DNSEWEFQK 115 (118)
Q Consensus 107 Cr~~~~~~~ 115 (118)
||++|.+++
T Consensus 76 cRq~~~~~e 84 (84)
T KOG1493|consen 76 CRQTWQFKE 84 (84)
T ss_pred chheeEecC
Confidence 999999874
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.65 E-value=5.4e-17 Score=93.00 Aligned_cols=44 Identities=41% Similarity=0.890 Sum_probs=36.8
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 108 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 108 (118)
+.|+||++.|.. ++. ++.++|||.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~-------------~~~--~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFED-------------GEK--VVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHT-------------TSC--EEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcC-------------CCe--EEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 579999999975 233 66678999999999999999999999997
No 7
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.5e-14 Score=114.47 Aligned_cols=47 Identities=32% Similarity=0.807 Sum_probs=41.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC-CCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~ 111 (118)
+.|+||+|+|.. +++ +..|+|+|.||..||++||... ..||+|+++.
T Consensus 230 ~~CaIClEdY~~-------------Gdk--lRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEK-------------GDK--LRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeeccccc-------------CCe--eeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 589999999987 555 6779999999999999999986 5599999854
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.3e-13 Score=109.69 Aligned_cols=62 Identities=24% Similarity=0.582 Sum_probs=45.5
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
..|..|.|||+++..+ ..+..-.+.+..+..++|||+||.+|++.|++++++||+||++..+
T Consensus 285 n~D~~C~ICmde~~h~-----~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHP-----DHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCC-----CCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 3578899999996552 0001111223345679999999999999999999999999998544
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.39 E-value=2.4e-13 Score=103.12 Aligned_cols=57 Identities=26% Similarity=0.550 Sum_probs=43.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
.+..|+||++.+.++- .......++++|+|.||..||.+|+..+.+||+||.++...
T Consensus 173 ~~~eC~ICle~~~~~~----------~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKE----------IKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCc----------cccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEE
Confidence 4578999999986510 00111245678999999999999999999999999987643
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.24 E-value=5.4e-12 Score=73.95 Aligned_cols=46 Identities=33% Similarity=0.636 Sum_probs=39.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
+..|.||++...+ +++++|||. |+..|+.+|+.....||+||++++
T Consensus 2 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD------------------VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS------------------EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc------------------eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5679999999755 778999999 999999999999999999999864
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.23 E-value=1e-11 Score=69.35 Aligned_cols=44 Identities=34% Similarity=0.838 Sum_probs=36.7
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEW 111 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 111 (118)
.|+||++.+.. ....++|||.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE-----------------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC-----------------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 48999999843 2555679999999999999998 77899999764
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.19 E-value=1.3e-11 Score=68.83 Aligned_cols=39 Identities=33% Similarity=0.831 Sum_probs=33.3
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCC
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 107 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 107 (118)
|+||++.+.+ .++.++|||.|+..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~-----------------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----------------PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----------------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC-----------------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 7899999865 25789999999999999999999999998
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-11 Score=96.38 Aligned_cols=47 Identities=28% Similarity=0.768 Sum_probs=40.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 111 (118)
-.|+|||++|.. ++. ++.++|.|.||..||++|+.. +..||+||.+.
T Consensus 324 veCaICms~fiK-------------~d~--~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIK-------------NDR--LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcc-------------cce--EEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 569999999953 333 788999999999999999994 88999999875
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.14 E-value=3.1e-11 Score=90.51 Aligned_cols=61 Identities=23% Similarity=0.544 Sum_probs=44.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC------CCCcCCccCccccccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPLDNSEWEFQKYG 117 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------~~CP~Cr~~~~~~~~~ 117 (118)
.+..|+||++.+-++ ..+++....++.+|+|.||..||..|...+ .+||+||..+.+...+
T Consensus 169 kE~eCgICmE~I~eK---------~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 169 KEKECGICYEVVYSK---------RLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred CCCCCccCccccccc---------cccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 468899999987541 001122234668999999999999999853 4699999988765443
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.9e-11 Score=92.01 Aligned_cols=53 Identities=23% Similarity=0.567 Sum_probs=45.9
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccccC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~~ 117 (118)
..+..|.+|++.... +..++|||+|+..||..|+..+..||+||..+...++.
T Consensus 237 ~a~~kC~LCLe~~~~------------------pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN------------------PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCC------------------CCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 445779999999876 44488999999999999999999999999999877764
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.10 E-value=7e-11 Score=67.26 Aligned_cols=38 Identities=32% Similarity=0.608 Sum_probs=30.1
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC----CCCcCC
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLD 107 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~C 107 (118)
|+||++.|.+ ++.++|||+|+..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~------------------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD------------------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS------------------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC------------------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999987 7789999999999999999873 369987
No 17
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.10 E-value=7.2e-11 Score=86.95 Aligned_cols=50 Identities=26% Similarity=0.603 Sum_probs=40.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----------------CCCCcCCccCc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----------------RQVCPLDNSEW 111 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----------------~~~CP~Cr~~~ 111 (118)
.+..|+||++.+.+ ++.+.|||.||..||.+|+.. ...||+||.++
T Consensus 17 ~~~~CpICld~~~d------------------PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 17 GDFDCNICLDQVRD------------------PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CccCCccCCCcCCC------------------cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 34679999999876 556889999999999999852 34799999987
Q ss_pred cccc
Q 033510 112 EFQK 115 (118)
Q Consensus 112 ~~~~ 115 (118)
....
T Consensus 79 s~~~ 82 (193)
T PLN03208 79 SEAT 82 (193)
T ss_pred Chhc
Confidence 6543
No 18
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.9e-11 Score=100.03 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=42.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
.++.|.||++.+.. +.+..+..++|+|+||.+|+..|+++.++||+||..
T Consensus 290 ~~~~C~IC~e~l~~-------------~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHS-------------GHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhcc-------------ccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 46889999999976 333345679999999999999999999999999983
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.03 E-value=2.1e-10 Score=61.85 Aligned_cols=38 Identities=37% Similarity=0.884 Sum_probs=32.0
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCC
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLD 107 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~C 107 (118)
|+||++.... ++.++|||.||..|+..|+. .+..||+|
T Consensus 1 C~iC~~~~~~------------------~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD------------------PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC------------------cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7888888433 66688999999999999998 57789987
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.02 E-value=2.1e-10 Score=64.23 Aligned_cols=39 Identities=36% Similarity=0.836 Sum_probs=33.6
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh--CCCCCcCC
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLD 107 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~C 107 (118)
|+||++.+.+ ....++|||.|+..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~-----------------~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-----------------PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-----------------EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-----------------CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 7899999876 135799999999999999999 46679998
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.02 E-value=2.5e-10 Score=69.08 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=41.2
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
.|+||++.|.+ ++..+|||+|.+.||.+|+..+.+||+|+.++....
T Consensus 3 ~Cpi~~~~~~~------------------Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 3 LCPISLEVMKD------------------PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred CCcCCCCcCCC------------------CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 59999999976 566899999999999999999899999999875543
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.8e-10 Score=80.65 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=43.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
..-.|+|||+.+.+ ..++-..|||+|+..||+.-++....||+|++....+.+
T Consensus 130 ~~~~CPiCl~~~se----------------k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSE----------------KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccCCCceecchhh----------------ccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 33569999999975 124558999999999999999999999999986655443
No 23
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.8e-10 Score=83.11 Aligned_cols=52 Identities=27% Similarity=0.614 Sum_probs=43.0
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCcCCccCcccccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~~~~ 116 (118)
...-.|.|||+.-++ +++..|||.|+.-||-+||.. ++.||+|+..+...++
T Consensus 45 ~~~FdCNICLd~akd------------------PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD------------------PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCC------------------CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 344579999999776 666779999999999999987 4579999998876654
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.92 E-value=1e-09 Score=62.75 Aligned_cols=44 Identities=23% Similarity=0.541 Sum_probs=36.7
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
.|.||++.|.. ...+.+++|||+|+..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~---------------~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE---------------ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC---------------CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 38999999932 223788999999999999999866788999985
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=2e-09 Score=86.95 Aligned_cols=50 Identities=30% Similarity=0.541 Sum_probs=42.4
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
...|+||++.|.. ++.++|||.||..||..|+.....||+|+..+...++
T Consensus 26 ~l~C~IC~d~~~~------------------PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 26 SLRCHICKDFFDV------------------PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccCCCcCchhhhC------------------ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 3579999999976 4568999999999999999998899999998765433
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-09 Score=84.25 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=48.1
Q ss_pred cCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccCccccccC
Q 033510 45 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~~~ 117 (118)
...++..|+||-+.|.....+ .+--...-.++|+|+||..||+.|... +++||.|+...+.+++.
T Consensus 220 khl~d~vCaVCg~~~~~s~~e--------egvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDE--------EGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCCCcchhHhhcchheeecch--------hhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 345678899999998762111 011123566999999999999999875 78999999888877653
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.63 E-value=2.8e-08 Score=56.85 Aligned_cols=34 Identities=29% Similarity=0.620 Sum_probs=21.9
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
|+||++ |.. .+..+++++|||+|...||++++..
T Consensus 1 CpIc~e-~~~--------------~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FST--------------EENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----T--------------TSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccC--------------CCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 754 3334777889999999999999985
No 28
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.58 E-value=8.2e-09 Score=64.73 Aligned_cols=52 Identities=29% Similarity=0.647 Sum_probs=25.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcce-eee--cCCCCcccHhHHHHHHhC-----------CCCCcCCccCcccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECT-VAW--GVCNHAFHFHCISRWLKT-----------RQVCPLDNSEWEFQ 114 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~C~H~FH~~Ci~~Wl~~-----------~~~CP~Cr~~~~~~ 114 (118)
..|.||+..+.+ .+... ++- ..|++.||..||.+||.. .+.||.|+.+...+
T Consensus 3 ~~C~IC~~~~~~-------------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLD-------------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-T-------------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecC-------------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 569999998752 11111 111 479999999999999984 13599999876543
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.9e-08 Score=82.76 Aligned_cols=59 Identities=27% Similarity=0.622 Sum_probs=39.6
Q ss_pred ccccccccchhhh--hHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCc
Q 033510 50 DNCAICRNHIMDL--CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 111 (118)
..|+|||.++..- -.+| +..++-- ...-++.+|.|+||+.|+.+|+.+ +..||+||.+.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~--~~~~~~~-~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDC--MVASMMV-RRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred ccceEeccccceeeccCcc--hhhhhhh-hccccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 5699999998641 0111 0000000 001466899999999999999996 55899999875
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.53 E-value=3.8e-08 Score=76.67 Aligned_cols=49 Identities=29% Similarity=0.482 Sum_probs=43.5
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
..|-||-+.|.. +...+|||.|+.-||+..|..+..||+||.++.+.+.
T Consensus 26 lrC~IC~~~i~i------------------p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 26 LRCRICDCRISI------------------PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred HHhhhhhheeec------------------ceecccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 569999999976 6678999999999999999999999999998766543
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.9e-08 Score=75.30 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=42.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH-HHhCCC-CCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR-WLKTRQ-VCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~-Wl~~~~-~CP~Cr~~~~~~~~ 116 (118)
.+..|+||++.... +..++|||+|+..||-. |-..+. .||+||+....+++
T Consensus 214 ~d~kC~lC~e~~~~------------------ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEPEV------------------PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred cccceeeeecccCC------------------cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 46679999999876 56688999999999999 887755 49999998776665
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.52 E-value=2.8e-08 Score=78.68 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=41.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
-.|.||.+.|.. +++.+|+|.|+.-||+..|..+..||.|+.++.-
T Consensus 24 LRC~IC~eyf~i------------------p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNI------------------PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcC------------------ceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 469999999976 7778899999999999999999999999988753
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.50 E-value=4.7e-08 Score=85.48 Aligned_cols=54 Identities=35% Similarity=0.806 Sum_probs=42.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccCccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSEWEF 113 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 113 (118)
.+.|+||+..+.. -+-+.|...| +.|.|.||..||-+|+.+ +++||+||.++.+
T Consensus 1469 ~eECaICYsvL~~-------vdr~lPskrC----~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDM-------VDRSLPSKRC----ATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHH-------HhccCCcccc----chhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4789999999862 2334444444 679999999999999997 6789999988765
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.46 E-value=1.5e-07 Score=55.19 Aligned_cols=29 Identities=21% Similarity=0.658 Sum_probs=23.9
Q ss_pred eeecCCC-----CcccHhHHHHHHhC--CCCCcCCc
Q 033510 80 VAWGVCN-----HAFHFHCISRWLKT--RQVCPLDN 108 (118)
Q Consensus 80 ~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr 108 (118)
+...+|. |.||..||.+|+.. +.+||+|+
T Consensus 14 ~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 14 PLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred eeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4557785 89999999999976 45899995
No 35
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.7e-08 Score=77.58 Aligned_cols=45 Identities=27% Similarity=0.727 Sum_probs=34.3
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCcCCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDN 108 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr 108 (118)
..|.|| .++.. ..+.......|||+||..|+.+|++. +..||+|+
T Consensus 5 A~C~Ic-~d~~p-------------~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHIC-IDGRP-------------NDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEe-ccCCc-------------cccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 469999 55543 23333445679999999999999998 35899998
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.42 E-value=2.2e-07 Score=58.41 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=37.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQ 114 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~ 114 (118)
-.|+|+.+.|.+ ++.+++||.|-+.+|.+|+.. ..+||+++.+....
T Consensus 5 f~CpIt~~lM~d------------------PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 5 FLCPITGELMRD------------------PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GB-TTTSSB-SS------------------EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cCCcCcCcHhhC------------------ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 469999999988 777899999999999999999 88999999876654
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=4.1e-07 Score=71.39 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=38.6
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~~~~ 115 (118)
+..|+||..+.-. .....++...|||.||..||+..+. ....||.|+..+...+
T Consensus 3 ~~~CP~Ck~~~y~-------------np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYR-------------NPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCcc-------------CcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4679999997322 1111234448999999999999664 4668999998776654
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3e-07 Score=75.86 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=39.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC-----CCCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----~~CP~Cr~~~~~~~ 115 (118)
+..|+||++.... +..+.|||+||..||-+.+... ..||+|+..+..++
T Consensus 186 ~~~CPICL~~~~~------------------p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSV------------------PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCc------------------ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 5679999999754 4557799999999999998863 57999998766543
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.6e-07 Score=66.88 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=37.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 108 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 108 (118)
+.-.|.||++.|.. +..++|||.|+..||..++.....||.||
T Consensus 12 ~~~~C~iC~~~~~~------------------p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFRE------------------PVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhc------------------CccccccchHhHHHHHHhcCCCcCCcccC
Confidence 45679999999987 35689999999999999998667899999
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.19 E-value=5.4e-07 Score=73.43 Aligned_cols=47 Identities=23% Similarity=0.692 Sum_probs=37.2
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
.+-.+|+||++.+.. ....++...|.|.||-.|+.+|. ..+||+||.
T Consensus 173 tELPTCpVCLERMD~--------------s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~ 219 (493)
T KOG0804|consen 173 TELPTCPVCLERMDS--------------STTGILTILCNHSFHCSCLMKWW--DSSCPVCRY 219 (493)
T ss_pred ccCCCcchhHhhcCc--------------cccceeeeecccccchHHHhhcc--cCcChhhhh
Confidence 355789999999865 22235667799999999999996 556999985
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.16 E-value=3.7e-07 Score=56.26 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=24.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
-.|++|.+.|.+| +.++.|.|+|+..||..-+.. -||+|+.+--.+.+
T Consensus 8 LrCs~C~~~l~~p-----------------v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILKEP-----------------VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--SS------------------B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS-
T ss_pred cCCcHHHHHhcCC-----------------ceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHH
Confidence 4599999999773 677999999999999885543 49999986544443
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.8e-06 Score=66.36 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=39.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 112 (118)
....|+||++...- ++.+.|+|.|+..||+.-... ..+|++||.++.
T Consensus 6 ~~~eC~IC~nt~n~------------------Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGNC------------------PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCCc------------------CccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence 45779999999654 466999999999999988776 567999999874
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.8e-06 Score=65.89 Aligned_cols=49 Identities=27% Similarity=0.667 Sum_probs=39.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccC
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSE 110 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~ 110 (118)
..+|+||++.+.- +++. .++.+.|||.|...||++||.. ...||.|..+
T Consensus 4 g~tcpiclds~~~------------~g~h-r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTT------------AGNH-RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeee------------cCce-EEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3579999999976 2444 4667999999999999999963 4579999754
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=9.1e-06 Score=64.83 Aligned_cols=56 Identities=29% Similarity=0.627 Sum_probs=40.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh--C-----CCCCcCCccCccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--T-----RQVCPLDNSEWEF 113 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~-----~~~CP~Cr~~~~~ 113 (118)
.+.+|.||++.+.+.. +......++++|.|.|+..||..|-. . ...||.||..-++
T Consensus 160 ~~k~CGICme~i~ek~----------~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKA----------ASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccc----------hhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3678999999987621 11111234577999999999999984 3 4689999975443
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.83 E-value=4.1e-06 Score=72.42 Aligned_cols=33 Identities=27% Similarity=0.596 Sum_probs=29.7
Q ss_pred eecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 81 AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 81 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
....|+|.||.+||..|-+..++||+||.+|.-
T Consensus 140 ~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 140 SEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred cccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 347899999999999999999999999998753
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.7e-05 Score=63.16 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=38.9
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCC-cccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|.||+.+-.+ .++++|.| -.+..|-+.-.-+.+.||+||+++.
T Consensus 290 gkeCVIClse~rd------------------t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRD------------------TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcc------------------eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4579999999876 67799999 5899999887767889999999764
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.2e-05 Score=69.04 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=41.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcccccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~~~ 116 (118)
-.|+.|-....+ .++..|+|.||..||..-+.. ...||.|...|..-.+
T Consensus 644 LkCs~Cn~R~Kd------------------~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 644 LKCSVCNTRWKD------------------AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred eeCCCccCchhh------------------HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 469999988776 566889999999999999987 6689999999865443
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=1.8e-05 Score=47.43 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=34.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
+.|.||++.-.+ -++-.|||. .+..|-.+-++ .+..||+||++.+
T Consensus 8 dECTICye~pvd------------------sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVD------------------SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcch------------------HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 889999998544 334569994 78888665555 6899999999753
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=1.2e-05 Score=64.10 Aligned_cols=47 Identities=28% Similarity=0.541 Sum_probs=39.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 112 (118)
+-.|.||++.|.. ......|.|.|+..||..-++. ++.||.||+...
T Consensus 43 ~v~c~icl~llk~-----------------tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 43 QVICPICLSLLKK-----------------TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhccHHHHHHHHh-----------------hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 4569999999975 2555789999999999999886 789999998654
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.49 E-value=3e-05 Score=60.88 Aligned_cols=54 Identities=26% Similarity=0.626 Sum_probs=41.9
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-----------------------CCC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----------------------RQV 103 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----------------------~~~ 103 (118)
.....|+|||--|.+ +.. +..+.|-|.||.+|+.++|.. .-+
T Consensus 113 ~p~gqCvICLygfa~-------------~~~--ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eav 177 (368)
T KOG4445|consen 113 HPNGQCVICLYGFAS-------------SPA--FTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAV 177 (368)
T ss_pred CCCCceEEEEEeecC-------------CCc--eeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 345779999999976 333 677999999999999988762 236
Q ss_pred CcCCccCccccc
Q 033510 104 CPLDNSEWEFQK 115 (118)
Q Consensus 104 CP~Cr~~~~~~~ 115 (118)
||+||....++.
T Consensus 178 cpVcre~i~~e~ 189 (368)
T KOG4445|consen 178 CPVCRERIKIEE 189 (368)
T ss_pred hhHhhhhccccc
Confidence 999998776543
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.45 E-value=3.8e-05 Score=62.18 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=37.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC--CCCcCCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNS 109 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~ 109 (118)
-.|..|-+.|.. ....+.-++|.|+||..|+...|..+ .+||-||+
T Consensus 366 L~Cg~CGe~~Gl--------------k~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGL--------------KNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcC--------------CcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 468888888864 33457779999999999999999874 68999983
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.41 E-value=8.1e-05 Score=44.86 Aligned_cols=42 Identities=24% Similarity=0.518 Sum_probs=28.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPL 106 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~ 106 (118)
....|+|.+..|++| +.-..|||.|-+..|.+||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~P-----------------V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP-----------------VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE-----------------EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC-----------------cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346799999999873 555689999999999999944 456998
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.36 E-value=7.6e-05 Score=60.45 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=40.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
++-.|+||...+.+| +....|||.|+..||..|+..+..||.|+.....
T Consensus 20 ~~l~C~~C~~vl~~p-----------------~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP-----------------VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred ccccCccccccccCC-----------------CCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 456799999999872 2225899999999999999999999999876543
No 54
>PHA02862 5L protein; Provisional
Probab=97.26 E-value=0.0002 Score=50.82 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=36.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCC---CCcccHhHHHHHHhC--CCCCcCCccCcccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC---NHAFHFHCISRWLKT--RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C---~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~~ 116 (118)
++.|=||++.-.+ . ...-.| -..-|..||.+|+.. +..|++|+.++.+++.
T Consensus 2 ~diCWIC~~~~~e---------------~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 2 SDICWICNDVCDE---------------R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CCEEEEecCcCCC---------------C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 4679999998533 1 111223 246899999999986 5689999999887654
No 55
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00017 Score=58.67 Aligned_cols=47 Identities=26% Similarity=0.583 Sum_probs=39.6
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
.+-.|.||+..|.. ++.++|||.|+..||.+-+....-||+||.++.
T Consensus 83 sef~c~vc~~~l~~------------------pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYP------------------PVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred chhhhhhhHhhcCC------------------CccccccccccHHHHHHHhccCCCCcccccccc
Confidence 34569999888865 566799999999999998888889999998764
No 56
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.22 E-value=0.00029 Score=50.63 Aligned_cols=53 Identities=21% Similarity=0.600 Sum_probs=38.4
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCC---cccHhHHHHHHhC--CCCCcCCccCcccccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH---AFHFHCISRWLKT--RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H---~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~~ 116 (118)
..+..|=||++.-.. . ...-.|.. ..|..|+++|+.. ...|++|+.++.+++.
T Consensus 6 ~~~~~CRIC~~~~~~---------------~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 6 LMDKCCWICKDEYDV---------------V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKN 63 (162)
T ss_pred CCCCeeEecCCCCCC---------------c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEe
Confidence 356789999887421 1 12244555 5699999999987 5679999999987754
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.11 E-value=0.00017 Score=58.70 Aligned_cols=46 Identities=28% Similarity=0.677 Sum_probs=37.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 112 (118)
-+.|-||-+.-++ +..-+|||..+..|+..|-.. .++||.||.+.+
T Consensus 369 FeLCKICaendKd------------------vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKD------------------VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCC------------------cccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3569999887544 556789999999999999865 579999997654
No 58
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.02 E-value=0.00039 Score=64.10 Aligned_cols=50 Identities=28% Similarity=0.603 Sum_probs=37.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC----------CCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----------QVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----------~~CP~Cr~~~~ 112 (118)
.+|.|.||+.+-.. ..+.+.+.|+|+||.+|.++-|+++ -+||+|..+.+
T Consensus 3485 ~DDmCmICFTE~L~---------------AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS---------------AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cCceEEEEehhhhC---------------CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 46778888876432 2235668999999999999888762 25999987653
No 59
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00092 Score=49.22 Aligned_cols=34 Identities=26% Similarity=0.660 Sum_probs=28.2
Q ss_pred cCCCCcccHhHHHHHHhC----C-------CCCcCCccCcccccc
Q 033510 83 GVCNHAFHFHCISRWLKT----R-------QVCPLDNSEWEFQKY 116 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~----~-------~~CP~Cr~~~~~~~~ 116 (118)
.+||..||.-|+..||+. + ..||+|..+..++--
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS 232 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS 232 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence 789999999999999985 1 359999998766543
No 60
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.91 E-value=0.00035 Score=45.82 Aligned_cols=32 Identities=22% Similarity=0.632 Sum_probs=26.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 95 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~ 95 (118)
.+..|++|...|.. ..+...+|||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~----------------~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN----------------SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC----------------ceEEEeCCCeEEeccccc
Confidence 45679999999853 247778999999999985
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.90 E-value=0.00033 Score=52.31 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=37.1
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
.|.||..+|+. ++...|||.|+..|..+=+.....|-+|.+.
T Consensus 198 ~C~iCKkdy~s------------------pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 198 LCGICKKDYES------------------PVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eehhchhhccc------------------hhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 69999999987 5668899999999999888888899999764
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.83 E-value=0.00097 Score=38.89 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=23.7
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
|++|.+++.. ....+.--.||+.+++.|..+-++ ....||-||++++
T Consensus 1 cp~C~e~~d~--------------~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDE--------------TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--C--------------CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccccc--------------CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 6788888843 122255578999999999999887 4889999999763
No 63
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.00056 Score=59.81 Aligned_cols=41 Identities=24% Similarity=0.631 Sum_probs=34.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
..|.+|.-.+..| .+--.|||.||.||+. .....||-|+.+
T Consensus 841 skCs~C~~~LdlP-----------------~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP-----------------FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc-----------------eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5799999998773 5667799999999998 456789999763
No 64
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0011 Score=51.21 Aligned_cols=51 Identities=24% Similarity=0.489 Sum_probs=40.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 112 (118)
..|.||-++|.. . .+...+..+.|||.|+..|+.+-+.. ...||.||..++
T Consensus 4 ~~c~~c~~~~s~-----------~-~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~ 55 (296)
T KOG4185|consen 4 PECEICNEDYSS-----------E-DGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE 55 (296)
T ss_pred CceeecCccccc-----------c-CcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence 469999999976 1 23334666889999999999988876 567999999864
No 65
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00058 Score=53.45 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=38.2
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
..|-||++.|.. ++...|+|.|+..|...-++....|++|.++
T Consensus 242 f~c~icr~~f~~------------------pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~ 284 (313)
T KOG1813|consen 242 FKCFICRKYFYR------------------PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQ 284 (313)
T ss_pred cccccccccccc------------------chhhcCCceeehhhhccccccCCcceecccc
Confidence 459999999987 6678999999999999888888999999774
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.62 E-value=0.00091 Score=56.28 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=38.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-----CCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~~~ 112 (118)
.+..|.+|-++-++ .+...|.|.|++.||..++.. +.+||.|.....
T Consensus 535 ~~~~C~lc~d~aed------------------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPAED------------------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChhhh------------------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 44679999998776 455889999999999999875 568999976543
No 67
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.59 E-value=0.00096 Score=38.55 Aligned_cols=40 Identities=25% Similarity=0.685 Sum_probs=25.1
Q ss_pred ccccccchhhhhHHHhhhcccCCCCcceeeecCCC--C---cccHhHHHHHHhC--CCCCcCC
Q 033510 52 CAICRNHIMDLCIECQANQASATSEECTVAWGVCN--H---AFHFHCISRWLKT--RQVCPLD 107 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--H---~FH~~Ci~~Wl~~--~~~CP~C 107 (118)
|-||++.-.+ +. ....+|+ - ..|..||.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~--------------~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE--------------DE--PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS--------------SS---EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCC--------------CC--ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5688887543 11 3345555 3 6899999999985 5679987
No 68
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.0042 Score=47.85 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=54.8
Q ss_pred CCcceeEeeceeeeeeecCCC-----------cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 28 KPKRFEIKKWSAVALWAWDIV-----------VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 28 ~~~~~~i~~~~~~~~~~~~~~-----------~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
+.+.++++.+.++.+--.+.+ .-.|+||++.+.. ...| .++-+|||+|...|+++
T Consensus 189 s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtN-------------t~~c-a~Lr~sg~Vv~~ecvEk 254 (303)
T KOG3039|consen 189 SGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTN-------------TTPC-AVLRPSGHVVTKECVEK 254 (303)
T ss_pred CCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcC-------------ccce-EEeccCCcEeeHHHHHH
Confidence 356667777666655332221 1359999999976 3333 56688999999999999
Q ss_pred HHhCCCCCcCCccCcccccc
Q 033510 97 WLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 97 Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
.+.....||+|.++..-..|
T Consensus 255 lir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 255 LIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred hccccccccCCCCcCcccce
Confidence 99999999999988765554
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.54 E-value=0.0019 Score=51.95 Aligned_cols=51 Identities=31% Similarity=0.445 Sum_probs=39.8
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH--HhCCCCCcCCccCcccc
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW--LKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W--l~~~~~CP~Cr~~~~~~ 114 (118)
|.++..|.||-+.+.- ..+++|+|..+..|--+- |-....||+||.+|+..
T Consensus 58 DEen~~C~ICA~~~TY------------------s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 58 DEENMNCQICAGSTTY------------------SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccceeEEecCCceE------------------EEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 3455679999998754 566999999999997654 33478899999999743
No 70
>PHA03096 p28-like protein; Provisional
Probab=96.53 E-value=0.0015 Score=50.99 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=34.2
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCcCCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNS 109 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~ 109 (118)
..|.||++....- ...+.---.+..|.|.|+..||..|... ..+||.||.
T Consensus 179 k~c~ic~e~~~~k----------~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAK----------YIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhh----------ccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5699999997650 0112222355789999999999999976 345665554
No 71
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0028 Score=49.29 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=37.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 112 (118)
.+-+|++|-+.=.. +-+.++|||+|+.-||..=+.. ..+||.|..+..
T Consensus 238 ~~~~C~~Cg~~Pti-----------------P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI-----------------PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCC-----------------CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45679999987432 1455779999999999887764 478999988765
No 72
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.37 E-value=0.0006 Score=53.94 Aligned_cols=44 Identities=25% Similarity=0.612 Sum_probs=37.3
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
.+|.+|...|.++ -....|=|.|++.||-+.|..+.+||+|...
T Consensus 16 itC~LC~GYliDA-----------------TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ 59 (331)
T KOG2660|consen 16 ITCRLCGGYLIDA-----------------TTITECLHTFCKSCIVKYLEESKYCPTCDIV 59 (331)
T ss_pred eehhhccceeecc-----------------hhHHHHHHHHHHHHHHHHHHHhccCCcccee
Confidence 5699999999761 2237799999999999999999999999753
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.28 E-value=0.0022 Score=36.38 Aligned_cols=24 Identities=29% Similarity=0.744 Sum_probs=16.2
Q ss_pred CCCCcccHhHHHHHHhCCC--CCcCC
Q 033510 84 VCNHAFHFHCISRWLKTRQ--VCPLD 107 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl~~~~--~CP~C 107 (118)
.|+=.+|..|+..++..+. .||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 4888999999999999855 79987
No 74
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.21 E-value=0.0023 Score=44.82 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=28.0
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCC------CcccHhHHHHHHh
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN------HAFHFHCISRWLK 99 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~------H~FH~~Ci~~Wl~ 99 (118)
....-.|+||++.+.+ +.+++.++|| |.||.+|+.+|-.
T Consensus 23 ~~~~~EC~IC~~~I~~---------------~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 23 PRCTVECQICFDRIDN---------------NDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred cccCeeehhhhhhhhc---------------CCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 3345679999999853 2235555565 7899999999943
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.98 E-value=0.0041 Score=49.91 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=42.1
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCccccccC
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~~~~ 117 (118)
+.++|-|+.|++++.. .++ .+.-.+||...++-|...--+. ++.||-||+.+.-++++
T Consensus 11 edeed~cplcie~mdi-------------tdk-nf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 11 EDEEDYCPLCIEPMDI-------------TDK-NFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred ccccccCccccccccc-------------ccC-CcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 3466779999999875 222 3555889998888886554433 78899999988776653
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.91 E-value=0.0035 Score=54.99 Aligned_cols=46 Identities=30% Similarity=0.722 Sum_probs=33.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC-------CCCcCCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-------QVCPLDNS 109 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-------~~CP~Cr~ 109 (118)
-.|.||++.+... ..+.--..|=|+||..||..|.... =.||.|+.
T Consensus 192 yeCmIC~e~I~~t--------------~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 192 YECMICTERIKRT--------------APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred eEEEEeeeecccc--------------CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4699999999651 1112225688999999999999761 24999984
No 77
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.83 E-value=0.0095 Score=45.70 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=41.6
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
.-.|+|....|. +....+.+.+|||+|-..+|.+-- ....||+|..+|....+
T Consensus 113 ~~~CPvt~~~~~--------------~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 113 RFICPVTGKEFN--------------GKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred eeECCCCCcccC--------------CceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 346999999984 344456778999999999999973 35679999999986654
No 78
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.76 E-value=0.0043 Score=37.11 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.0
Q ss_pred eeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 80 VAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
..+++|||.....|..-+ +-+-||+|.++|+..+
T Consensus 20 ~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 20 GTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 456999999999998764 4677999999988654
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0018 Score=52.56 Aligned_cols=50 Identities=26% Similarity=0.513 Sum_probs=40.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+||.+.|...= ++ .-.+.|||.+|..||.+||.....||.|+++..
T Consensus 196 v~sl~I~~~slK~~y------------~k--~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNY------------DK--ISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHH------------HH--HHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 467999999998721 11 223679999999999999999999999998765
No 80
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0086 Score=48.36 Aligned_cols=49 Identities=20% Similarity=0.429 Sum_probs=40.5
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
+.+++.|+||+..=- ..+..+|+|.=+..||.+.+.+.+.|=.|+....
T Consensus 419 ~sEd~lCpICyA~pi------------------~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPI------------------NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccc------------------hhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 356788999987632 2567899999999999999999999999987543
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.42 E-value=0.0061 Score=46.37 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=28.4
Q ss_pred eeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccccC
Q 033510 79 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 79 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~~ 117 (118)
.+.++.|+|+|+..|...- ....||+|++.....++.
T Consensus 17 ~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 17 PFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQLN 53 (233)
T ss_pred ceeeeechhhhhhhhcccC--Cccccccccceeeeeecc
Confidence 4788999999999997542 133899999987666553
No 82
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.0094 Score=52.57 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=30.8
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
..++.|.+|...|.. . ...+-+|||.||..||.+-..
T Consensus 815 ep~d~C~~C~~~ll~--------------~--pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI--------------K--PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhc--------------C--cceeeeccchHHHHHHHHHHH
Confidence 367899999999864 1 478899999999999988765
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.15 E-value=0.012 Score=45.86 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=27.2
Q ss_pred eeeecCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 79 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 79 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
.+..++|||.-|..|++.-...+-+||+|.+
T Consensus 174 ~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 174 DAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3566999999999999998888888999977
No 84
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.94 E-value=0.014 Score=51.10 Aligned_cols=26 Identities=38% Similarity=0.953 Sum_probs=23.2
Q ss_pred eecCCCCcccHhHHHHHHhCCCCCcC
Q 033510 81 AWGVCNHAFHFHCISRWLKTRQVCPL 106 (118)
Q Consensus 81 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 106 (118)
+-+.|+|+.|..|...|+.....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 34779999999999999999999984
No 85
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.02 Score=45.93 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=31.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
..+.|.||++...+ ...++|||.-+ |..-- +...+||+||+-.
T Consensus 304 ~p~lcVVcl~e~~~------------------~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS------------------AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccc------------------eeeecCCcEEE--chHHH-hhCCCCchhHHHH
Confidence 45789999999765 67799999855 54332 2344599999743
No 86
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.0097 Score=46.83 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=29.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
+..|+||++.-.+ -+.|.|||. -+..|-++ -+.||+||+..
T Consensus 300 ~~LC~ICmDaP~D------------------CvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRD------------------CVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcc------------------eEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 4569999998544 456999994 57777533 45899999853
No 87
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.031 Score=42.72 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=34.5
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--------CCCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr~~~ 111 (118)
..|..|--.+.+ ++ -+.+.|-|.||..|+..|-.. .-.||-|..+.
T Consensus 51 pNC~LC~t~La~--------------gd--t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLAS--------------GD--TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCcccc--------------Cc--ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 458888777754 22 334789999999999999875 23599998764
No 88
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.023 Score=46.43 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=34.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--------CCCCcCCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDN 108 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr 108 (118)
-.|.||++... |..+ ...++|+|+|++.|+..++.. .-.||-+.
T Consensus 185 f~C~ICf~e~~--------------G~~c-~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 185 FDCCICFEEQM--------------GQHC-FKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred ccceeeehhhc--------------Ccce-eeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 45999999975 3343 677999999999999999974 23487664
No 89
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.32 E-value=0.061 Score=47.57 Aligned_cols=53 Identities=21% Similarity=0.627 Sum_probs=38.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCC-----cccHhHHHHHHhC--CCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-----AFHFHCISRWLKT--RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-----~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~~ 116 (118)
+++.|-||+.+=.. +. +..-||.. ..|++|+-+|+.- ...|-+|..+++++++
T Consensus 11 d~~~CRICr~e~~~--------------d~--pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIR--------------DD--PLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCC--------------CC--cCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 45789999977321 22 33344543 5899999999986 4569999999998875
No 90
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.028 Score=40.88 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=23.0
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccH
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHF 91 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~ 91 (118)
..+|.||+|+++. ++. +..++|-.+||.
T Consensus 177 kGECvICLEdL~~-------------Gdt--IARLPCLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEA-------------GDT--IARLPCLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccC-------------CCc--eeccceEEEeec
Confidence 3579999999976 444 777999999996
No 91
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.39 E-value=0.22 Score=29.72 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=34.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcC--CccCccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL--DNSEWEF 113 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~--Cr~~~~~ 113 (118)
....|.+|-+.|.. +..+++-..||-.||+.|-.+ ...|-+ |...+.+
T Consensus 4 ~~~~C~~Cg~~~~~--------------~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~~~~ 53 (54)
T PF14446_consen 4 EGCKCPVCGKKFKD--------------GDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTGFEW 53 (54)
T ss_pred cCccChhhCCcccC--------------CCCEEECCCCCCcccHHHHhh----CCceEeccCCCCccc
Confidence 34679999999964 233577789999999999643 556655 7665543
No 92
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=92.30 E-value=0.087 Score=39.74 Aligned_cols=46 Identities=30% Similarity=0.868 Sum_probs=38.2
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|.+|....-. + +.-+.||-.||..|+...+.....||.|..-|.
T Consensus 182 k~Cn~Ch~LvIq-------------g----~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ-------------G----IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhhe-------------e----eccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 579999988654 2 444789999999999999999999999987664
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.25 E-value=0.042 Score=47.64 Aligned_cols=44 Identities=23% Similarity=0.577 Sum_probs=35.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 112 (118)
..|.||++ ... ...+.|+|.|+..|+..-+.. ...||+||....
T Consensus 455 ~~c~ic~~-~~~------------------~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDS------------------FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-ccc------------------ceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 57999999 332 566889999999999998876 345999997654
No 94
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.08 Score=42.28 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=39.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
....|+||+.....| -++..-|-+||..||-..+...+.||+=..+-.+..+
T Consensus 299 ~~~~CpvClk~r~Np-----------------tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP-----------------TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHL 350 (357)
T ss_pred ccccChhHHhccCCC-----------------ceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHH
Confidence 456799999997652 2334469999999999999999999997666554443
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.61 E-value=0.12 Score=41.71 Aligned_cols=31 Identities=16% Similarity=0.702 Sum_probs=23.1
Q ss_pred CCCcccHhHHHHHHhC-------------CCCCcCCccCccccc
Q 033510 85 CNHAFHFHCISRWLKT-------------RQVCPLDNSEWEFQK 115 (118)
Q Consensus 85 C~H~FH~~Ci~~Wl~~-------------~~~CP~Cr~~~~~~~ 115 (118)
|.=.++.+||-+|+.. +-.||+||+.|=+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 4445688999999975 246999999885543
No 96
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=91.19 E-value=0.085 Score=39.11 Aligned_cols=53 Identities=23% Similarity=0.561 Sum_probs=37.9
Q ss_pred cccccccchhhhhHHHhhhcccCCCCc-ceeeecCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEE-CTVAWGVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
.|.+|... .-.|.-|..++..+|-+. .+..-..|+-+||..|.. ...||-|.+
T Consensus 144 ~C~lC~~k-GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 144 SCELCQQK-GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred HhHHHHhC-CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 57777665 335666666666667665 556668899999999976 267999954
No 97
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.88 E-value=0.15 Score=40.62 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=33.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNS 109 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~ 109 (118)
..|..|...+..| .....|+|.|+.+||..-|.. ...||.|.+
T Consensus 275 LkCplc~~Llrnp-----------------~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP-----------------MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc-----------------ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 4688888887762 222479999999999988765 678999954
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.05 E-value=0.091 Score=48.29 Aligned_cols=43 Identities=26% Similarity=0.535 Sum_probs=36.3
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
-.|.||++.+.. . -....|||.|+..|+..|+..+..||+|..
T Consensus 1154 ~~c~ic~dil~~-------------~----~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN-------------Q----GGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHh-------------c----CCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 379999999874 1 223669999999999999999999999974
No 99
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=0.15 Score=39.49 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=35.0
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCC---CCcccHhHHHHHHhCC--------CCCcCCccCccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC---NHAFHFHCISRWLKTR--------QVCPLDNSEWEF 113 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C---~H~FH~~Ci~~Wl~~~--------~~CP~Cr~~~~~ 113 (118)
..+..|=||+..=++- ....=+.-..| .|..|..||.+|+..+ -+||-|+.++.+
T Consensus 18 e~eR~CWiCF~TdeDn------------~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDN------------RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCccc------------chhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3456799999885540 00000111223 3789999999999752 259999987653
No 100
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.52 E-value=0.37 Score=34.76 Aligned_cols=15 Identities=27% Similarity=0.815 Sum_probs=10.9
Q ss_pred CCCc-ccHhHHHHHHh
Q 033510 85 CNHA-FHFHCISRWLK 99 (118)
Q Consensus 85 C~H~-FH~~Ci~~Wl~ 99 (118)
|+-. -|..||++.-+
T Consensus 32 c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 32 CDTSYRHSNCLDQFKK 47 (162)
T ss_pred cCCccchhHHHHHHHH
Confidence 5543 47899999876
No 101
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.84 E-value=0.24 Score=39.23 Aligned_cols=31 Identities=13% Similarity=0.430 Sum_probs=24.1
Q ss_pred CCCcccHhHHHHHHhC-------------CCCCcCCccCccccc
Q 033510 85 CNHAFHFHCISRWLKT-------------RQVCPLDNSEWEFQK 115 (118)
Q Consensus 85 C~H~FH~~Ci~~Wl~~-------------~~~CP~Cr~~~~~~~ 115 (118)
|.-.+++.|+-+|+.. +-+||+||+.|=+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5567889999999864 357999999886544
No 102
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=0.23 Score=40.36 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=28.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
...+|.||+.++.. .+. ......|+|.|+.+|+.+.++.
T Consensus 145 ~~~~C~iC~~e~~~-------------~~~-~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPE-------------AED-MFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCcccccc-------------Hhh-hHHHhcccchhhhHHhHHHhhh
Confidence 35789999955433 111 1225789999999999999885
No 103
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=0.31 Score=39.59 Aligned_cols=46 Identities=26% Similarity=0.500 Sum_probs=37.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 108 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 108 (118)
..|++|.-.++. ...|.-+.-.|||.|+..|...|...+..|..|-
T Consensus 307 r~CpkC~~~ie~-------------~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 307 RQCPKCKFMIEL-------------SEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred CcCcccceeeee-------------cCCcceEEeeccccchhhcCcchhhCCccccCcc
Confidence 469999988876 4458888888999999999999998887776553
No 104
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=0.56 Score=38.29 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=38.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC---CCCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~~~~~~ 115 (118)
.-.|+|=.+.= .++-+++.+.|||+.-..-|.+-.+.. ..||+|=.+-...+
T Consensus 334 vF~CPVlKeqt---------------sdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~ 388 (394)
T KOG2817|consen 334 VFICPVLKEQT---------------SDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASD 388 (394)
T ss_pred eeecccchhhc---------------cCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHh
Confidence 34698877764 345568999999999999999987762 46999966544443
No 105
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=0.3 Score=38.94 Aligned_cols=28 Identities=25% Similarity=0.693 Sum_probs=21.7
Q ss_pred eecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 81 AWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 81 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
...+|.|+|+.+|-.. ...+.||.|...
T Consensus 105 RmIPCkHvFCl~CAr~--~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARS--DSDKICPLCDDR 132 (389)
T ss_pred cccccchhhhhhhhhc--CccccCcCcccH
Confidence 3478999999999753 335689999664
No 106
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=0.29 Score=42.45 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=34.5
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|.||++.|.. ... .++.+.|||..+.+|++.-. +.+||.=+.+|.
T Consensus 12 l~c~ic~n~f~~-------------~~~-~Pvsl~cghtic~~c~~~ly--n~scp~~~De~~ 58 (861)
T KOG3161|consen 12 LLCDICLNLFVV-------------QRL-EPVSLQCGHTICGHCVQLLY--NASCPTKRDEDS 58 (861)
T ss_pred hhchHHHHHHHH-------------Hhc-CcccccccchHHHHHHHhHh--hccCCCCccccc
Confidence 469999999875 222 25668899999999998754 567884355554
No 107
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=86.34 E-value=0.11 Score=44.42 Aligned_cols=61 Identities=23% Similarity=0.474 Sum_probs=37.6
Q ss_pred ccccccchhhhhHHHhhhcccCCC-CcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 52 CAICRNHIMDLCIECQANQASATS-EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 52 C~IC~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
|..|...-- .|.-|+.++..+|- ...+..-..|+++||..|+.. .+.-||.|-+-++.++.
T Consensus 504 C~lC~~~gf-iCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R~q~r~~~ 565 (580)
T KOG1829|consen 504 CDLCTGKGF-ICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCERRQKRAEQ 565 (580)
T ss_pred chhhccCee-eeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchHHHHHHhhc
Confidence 555554421 34445555555555 333455578999999999754 23449999776665544
No 108
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.45 E-value=0.71 Score=32.47 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=35.2
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCcCCccCccccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNSEWEFQK 115 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~~~ 115 (118)
=.|.||.|.-.+ ..+-+ +- --||-..+..|-..-++. ..+||+|+..|+-..
T Consensus 81 YeCnIC~etS~e---------e~FLK----Pn-eCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAE---------ERFLK----PN-ECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccch---------hhcCC----cc-cccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 459999998654 11111 11 339999898887665554 678999999887543
No 109
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.32 E-value=0.46 Score=36.41 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=34.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCC-----CcccHhHHHHHHhC--CCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 112 (118)
+..|-||..+... .... ....+|. +..|+.|+..|+.. +..|.+|...+.
T Consensus 78 ~~~cRIc~~~~~~-------------~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEE-------------SNGL-LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEeccccc-------------cccc-ccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3679999997653 1100 2334444 46799999999984 668999987554
No 110
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.04 E-value=0.99 Score=35.55 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=27.0
Q ss_pred eeecCCCCcccHhHHHHHHhC-CCCCcCCccCcc
Q 033510 80 VAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWE 112 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 112 (118)
++.-+|+|..+-.|+..-+.. ...||-|.....
T Consensus 18 ~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 18 LMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred eeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 555699999999999999887 568999976443
No 111
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.43 E-value=0.4 Score=27.92 Aligned_cols=29 Identities=21% Similarity=0.542 Sum_probs=22.3
Q ss_pred cCCC-CcccHhHHHHHHhCCCCCcCCccCc
Q 033510 83 GVCN-HAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 83 ~~C~-H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
..|. |..+..|+..-|.....||+|..+.
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcC
Confidence 4465 9999999999999999999998764
No 112
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.62 E-value=0.7 Score=34.54 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=20.4
Q ss_pred eeeecCCCC-cccHhHHHHHHhCCCCCcCCccC
Q 033510 79 TVAWGVCNH-AFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 79 ~~~~~~C~H-~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
.++++||.| .++..|=.. -..||+|+..
T Consensus 170 ~VlllPCrHl~lC~~C~~~----~~~CPiC~~~ 198 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES----LRICPICRSP 198 (207)
T ss_pred eEEeecccceEeccccccc----CccCCCCcCh
Confidence 388899998 577777422 5569999864
No 113
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.97 E-value=0.88 Score=35.92 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=32.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
.-..|+||.+.|.-| +..-.=||.-+..|-. +..+.||.||.++-
T Consensus 47 ~lleCPvC~~~l~~P-----------------i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP-----------------IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccc-----------------ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 345799999999753 3334446888877754 44778999998764
No 114
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=82.62 E-value=0.67 Score=38.76 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=29.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
++-.|.||-.-|++ ++.++|+|+.++.|...-+.+
T Consensus 3 eelkc~vc~~f~~e------------------piil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE------------------PIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccC------------------ceEeecccHHHHHHHHhhccc
Confidence 45679999999987 677999999999999876654
No 115
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=1.9 Score=33.58 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=37.5
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
.|+|=.-+|. +.-.-..+..|||+|-..-+.+-- ..+|++|...++...+
T Consensus 113 iCPvtgleMn--------------g~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 113 ICPVTGLEMN--------------GKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ecccccceec--------------ceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCe
Confidence 4888777764 344456778899999988887743 7789999998876554
No 116
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.61 E-value=1.3 Score=37.30 Aligned_cols=46 Identities=30% Similarity=0.698 Sum_probs=35.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
..+.|.||++.. . ....+|. |.-|+..|+..+.+||+|+....+..
T Consensus 478 ~~~~~~~~~~~~-~------------------~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 478 PNDVCAICYQEM-S------------------ARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred ccCcchHHHHHH-H------------------hcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 457899999987 3 1124455 99999999999999999988665443
No 117
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=80.18 E-value=1.8 Score=24.98 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=19.4
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-----CCCCcCCccC
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNSE 110 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~ 110 (118)
.|+|....+.. ++....|.|.-+.+ +..||.. .-.||+|.++
T Consensus 4 ~CPls~~~i~~-----------------P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI-----------------PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS-----------------EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe-----------------CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 47777777654 35667899973322 4556654 2259999764
No 118
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.35 E-value=0.46 Score=41.34 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=37.6
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC---CCCCcCCccCccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNSEWEF 113 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~ 113 (118)
...|.||...+.+ +..+.|-|.|...|+..-|.. ...||+|+...+.
T Consensus 21 ~lEc~ic~~~~~~------------------p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKE------------------PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeec------------------cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 4579999999977 356889999999999887776 3479999875443
No 119
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.06 E-value=0.79 Score=40.51 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=31.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCC
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 107 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 107 (118)
++.|.-|.+.... +++ .--.+....|||+||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~------~~~-----~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLP------SGA-----AFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccc------cCc-----ccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3578888888653 000 012256689999999999988776655 5444
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.43 E-value=2.2 Score=37.75 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=30.7
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 106 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~ 106 (118)
..|.+|...+.. ..+.--.|||.-|..|+.+|+....-||.
T Consensus 780 ~~CtVC~~vi~G----------------~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG----------------VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee----------------eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 357777777653 11333669999999999999998777766
No 121
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.48 E-value=3.7 Score=26.26 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
.....|.||-+++.. .. .++.-+.-..|+--.++.|.+-=.+ .++.||.|+..++
T Consensus 7 ~~~qiCqiCGD~VGl----------~~-~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 7 LNGQICQICGDDVGL----------TE-NGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -SS-B-SSS--B--B-----------S-SSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cCCcccccccCcccc----------CC-CCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 345689999999865 11 1222234456777788889875444 3789999998765
No 123
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=74.25 E-value=1.6 Score=24.57 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=21.5
Q ss_pred cceeeecCCCCcccHhHHHHHHhC------CCCCcCCc
Q 033510 77 ECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDN 108 (118)
Q Consensus 77 ~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr 108 (118)
...+.=-.|+..||..|+..=... .-.||.|+
T Consensus 12 ~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 12 GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 334555789999999998765441 23577764
No 124
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=73.83 E-value=1.1 Score=36.86 Aligned_cols=32 Identities=25% Similarity=0.581 Sum_probs=0.0
Q ss_pred CcceeeecCCCCcccHhHHHHHHhC------CCCCcCCccC
Q 033510 76 EECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNSE 110 (118)
Q Consensus 76 ~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 110 (118)
+..+-+.+.|||++..| .|-.. ...||+||..
T Consensus 300 ~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 300 ERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------
T ss_pred ccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 34456889999997744 67542 4579999874
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=72.83 E-value=2.4 Score=21.85 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=14.5
Q ss_pred CCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 85 CNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 85 C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
=+..||.+|+ .|..|+..+
T Consensus 19 ~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 19 LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CCccccccCC--------CCcccCCcC
Confidence 4789999986 578887654
No 126
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=2.6 Score=34.67 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=29.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
....|.||.+.+.. ....+.|||.|+..|....+.+
T Consensus 69 ~~~~c~ic~~~~~~-----------------~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG-----------------EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc-----------------hhhhcCCCcHHHHHHHHHHhhh
Confidence 45679999999842 2556889999999999999986
No 127
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=70.66 E-value=5.2 Score=31.25 Aligned_cols=48 Identities=19% Similarity=0.493 Sum_probs=32.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCccee--eecCCCCcccHhHHHHHHhC---------CCCCcCCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTV--AWGVCNHAFHFHCISRWLKT---------RQVCPLDNS 109 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~Cr~ 109 (118)
...|-+|.+.|.+ .+...+ .-..|+-.+|..|+..-+.. ...||.|++
T Consensus 182 ~~~celc~~ei~e-------------~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~ 240 (276)
T KOG3005|consen 182 NVECELCEKEILE-------------TDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEK 240 (276)
T ss_pred chhhHHHHHHhcc-------------ccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhc
Confidence 3689999999954 111110 11448889999999994442 457999986
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=70.52 E-value=1.4 Score=25.67 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=6.7
Q ss_pred CCCCcCCccCccc
Q 033510 101 RQVCPLDNSEWEF 113 (118)
Q Consensus 101 ~~~CP~Cr~~~~~ 113 (118)
...||+|.++|.-
T Consensus 20 ~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 20 KGCCPLCGRPLDE 32 (54)
T ss_dssp SEE-TTT--EE-H
T ss_pred CCcCCCCCCCCCH
Confidence 3489999998763
No 129
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.39 E-value=3.2 Score=32.27 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=28.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
+.|+.|++++.+ ++..+=||+|.++||-+.+..
T Consensus 44 dcCsLtLqPc~d------------------Pvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 44 DCCSLTLQPCRD------------------PVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ceeeeecccccC------------------CccCCCCeeeeHHHHHHHHHH
Confidence 679999999987 667888999999999988753
No 130
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=69.19 E-value=3 Score=25.85 Aligned_cols=13 Identities=31% Similarity=1.030 Sum_probs=9.4
Q ss_pred cccHhHHHHHHhC
Q 033510 88 AFHFHCISRWLKT 100 (118)
Q Consensus 88 ~FH~~Ci~~Wl~~ 100 (118)
-|++.||.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999863
No 131
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=68.82 E-value=3 Score=22.44 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=17.9
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCccc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH 90 (118)
.|.=|...|.. ++...+.....+.-..|+|.|+
T Consensus 4 ~Cp~C~~~y~i-------~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEI-------DDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeC-------CHHHCCCCCcEEECCCCCCEeC
Confidence 36666666654 1222233333455577888875
No 132
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.19 E-value=4.4 Score=35.37 Aligned_cols=48 Identities=29% Similarity=0.482 Sum_probs=36.5
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCC-cccHhHHHHHHhC------CCCCcCCccCcccccc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKT------RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~~~~ 116 (118)
.|+||-..+.- ++...||| ..+..|..+-... ...||+||.+++....
T Consensus 2 ~c~ic~~s~~~------------------~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSPDF------------------VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCccc------------------cccccccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 58888888754 67799999 8899998776543 3468999998776544
No 133
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=65.11 E-value=2.2 Score=33.09 Aligned_cols=50 Identities=16% Similarity=0.344 Sum_probs=35.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCc--CCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP--LDNS 109 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP--~Cr~ 109 (118)
.+..|+||..+.-. ..+-..++-..|-|..+-.|+++-+.+ .-.|| -|.+
T Consensus 9 ~d~~CPvCksDrYL------------nPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYL------------NPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCcccccccc------------CCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45689999988543 123333444569999999999999987 45799 6754
No 134
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=63.72 E-value=2.7 Score=25.25 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred eecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH
Q 033510 43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 98 (118)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl 98 (118)
|..+.+...|.+|...|.. ....-.--.||++|+..|....+
T Consensus 3 W~~d~~~~~C~~C~~~F~~--------------~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 3 WVPDSEASNCMICGKKFSL--------------FRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp SSSGGG-SB-TTT--B-BS--------------SS-EEE-TTT--EEECCCS-EEE
T ss_pred cCCCCCCCcCcCcCCcCCC--------------ceeeEccCCCCCEECCchhCCEE
Confidence 4444566889999999954 11123336699999999976544
No 135
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.69 E-value=6.3 Score=31.74 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=29.0
Q ss_pred CcceeeecCCCCcccHhHHHHHHhC---CCCCcCCccCccccc
Q 033510 76 EECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNSEWEFQK 115 (118)
Q Consensus 76 ~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~~~ 115 (118)
++-+++.+.|||+.-..-+++--+. ...||+|-..=.++.
T Consensus 348 ~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~ 390 (396)
T COG5109 348 DENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYEN 390 (396)
T ss_pred ccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhh
Confidence 4456888999999999998886654 346999965444443
No 136
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.40 E-value=5.4 Score=35.81 Aligned_cols=50 Identities=8% Similarity=0.053 Sum_probs=32.8
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC------CCCCcCCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNS 109 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~ 109 (118)
.++|.||.-.+..+ +++.+ +..+-.|+|.|+..||..|+.+ .-.|++|..
T Consensus 96 s~Ss~~C~~E~S~~-------~ds~~----i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPD-------VDSSN----ICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred ccccchhheecCCc-------ccccC----cCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 36788887777541 00111 1222459999999999999986 345788865
No 137
>PLN02189 cellulose synthase
Probab=59.65 E-value=11 Score=34.58 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=36.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
....|.||-+++.. . ..++.-+.--.|+--.|+.|.+-=.+ .++.||.|+..++
T Consensus 33 ~~~~C~iCgd~vg~----------~-~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGL----------T-VDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCc----------C-CCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45689999999864 0 11222234455888899999943222 3789999998766
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.48 E-value=7.5 Score=31.16 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=36.9
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+||.++... .....+-.+|++..+..|+..=...+..||.||++..
T Consensus 250 ~s~p~~~~~~~~--------------~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDL--------------TDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccc--------------cccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 579999998743 1222445778888888888877777899999997654
No 139
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=59.22 E-value=5.4 Score=21.48 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=17.2
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCccc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 90 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH 90 (118)
.|+-|...|..+ ++..+.....+.-..|+|.|.
T Consensus 4 ~CP~C~~~f~v~-------~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVP-------DDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcC-------HHHcccCCcEEECCCCCcEee
Confidence 366666666551 111112222355577888875
No 140
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=57.79 E-value=6.5 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=12.5
Q ss_pred CCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 84 VCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
.|||+|-..- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 4666654332 3447999976
No 141
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=56.94 E-value=2 Score=21.27 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=10.5
Q ss_pred CCcCCccCcccccc
Q 033510 103 VCPLDNSEWEFQKY 116 (118)
Q Consensus 103 ~CP~Cr~~~~~~~~ 116 (118)
.||+|.+.|....+
T Consensus 4 ~C~~CgR~F~~~~l 17 (25)
T PF13913_consen 4 PCPICGRKFNPDRL 17 (25)
T ss_pred cCCCCCCEECHHHH
Confidence 59999988865543
No 142
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=55.41 E-value=4.9 Score=22.90 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.3
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
..-|..||..|+ +|-.|++.+..
T Consensus 16 ~~~~~~~H~~Cf--------~C~~C~~~l~~ 38 (58)
T PF00412_consen 16 KAMGKFWHPECF--------KCSKCGKPLND 38 (58)
T ss_dssp EETTEEEETTTS--------BETTTTCBTTT
T ss_pred EeCCcEEEcccc--------ccCCCCCccCC
Confidence 357789999986 68888876653
No 143
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=54.82 E-value=15 Score=33.83 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=35.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH-hCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~Cr~~~~ 112 (118)
....|.||-+++... ..++--+.--.|+--.|+.|.+==. +.++.||.|+..++
T Consensus 16 ~~qiCqICGD~vg~~-----------~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKT-----------VDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcC-----------CCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345799999998751 1222234445677779999984211 23789999998765
No 144
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=53.78 E-value=6.6 Score=25.70 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=22.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
...|.||...... ++.|. ...|...||..|..+.
T Consensus 55 ~~~C~iC~~~~G~-~i~C~--------------~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGA-CIKCS--------------HPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCce-eEEcC--------------CCCCCcCCCHHHHHHC
Confidence 4679999998422 22221 1448889999998663
No 145
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=53.12 E-value=2.3 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=14.0
Q ss_pred eeec-CCCCcccHhHHHHH
Q 033510 80 VAWG-VCNHAFHFHCISRW 97 (118)
Q Consensus 80 ~~~~-~C~H~FH~~Ci~~W 97 (118)
.+.- .|+|.|+..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3344 79999999998877
No 146
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.35 E-value=6 Score=31.40 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=26.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
..|.+|.|.+++ ..-+..-.-=.|.|++-|-++-++.
T Consensus 269 LcCTLC~ERLED--------------THFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLED--------------THFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhcc--------------CceeecCCCcccceecccCHHHHHh
Confidence 569999999987 1111111223699999999999886
No 148
>PLN02400 cellulose synthase
Probab=49.68 E-value=16 Score=33.73 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=36.2
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH-hCCCCCcCCccCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNSEWE 112 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~Cr~~~~ 112 (118)
.....|.||-+++.. . ..++--+.--.|+--.|+.|.+==. +.++.||.|+..++
T Consensus 34 ~~gqiCqICGD~VG~----------t-~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGV----------T-ETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCc----------C-CCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 345689999999865 1 1223234445677779999984211 13789999998765
No 149
>PLN02436 cellulose synthase A
Probab=49.58 E-value=21 Score=33.06 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=36.4
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
.....|.||-+++.. . ..++--+.--.|+--.|+.|.+-=.+ .++.||.|+..++
T Consensus 34 ~~~~iCqICGD~Vg~----------t-~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIEL----------T-VDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCc----------C-CCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345689999999865 0 11222233345777799999943222 2789999998766
No 150
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=48.45 E-value=12 Score=21.55 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=14.4
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCC
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLD 107 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~C 107 (118)
..|||.|-..=-.+- .....||.|
T Consensus 32 ~~Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCCCeeEccHhhhc-cCCCCCCCC
Confidence 556777765433322 446679987
No 151
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.28 E-value=23 Score=24.15 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=34.2
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 108 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 108 (118)
...|--|+..|..+-.+ ..........-.-..|++.|+.+|=.=+-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~----~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVS----PFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccc----cccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45699999999651000 000000111233478999999999766666666799995
No 152
>PRK05978 hypothetical protein; Provisional
Probab=47.12 E-value=10 Score=27.05 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.3
Q ss_pred HHHhCCCCCcCCccCccccc
Q 033510 96 RWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 96 ~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
.+|+.+..||.|..+|+.++
T Consensus 47 g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 47 AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred cccccCCCccccCCccccCC
Confidence 78888999999999988764
No 153
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=46.13 E-value=10 Score=30.60 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=29.9
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC------CCCCcCCccC
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNSE 110 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 110 (118)
-|++=++.+.-|...= ......+.+-+++.|||+-..| .|=.. ...||+||..
T Consensus 292 QCPVglnTL~~P~~~~----~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 292 QCPVGLNTLAFPSKRR----KRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCCcccceeecccccc----cccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeee
Confidence 4666666654432221 1122334456889999974433 56544 3469999863
No 154
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=45.61 E-value=12 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=18.3
Q ss_pred HhHHHHHHh-CCCCCcCCccCccccccC
Q 033510 91 FHCISRWLK-TRQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 91 ~~Ci~~Wl~-~~~~CP~Cr~~~~~~~~~ 117 (118)
..||++=-. ..+-||+||.+.-+..|+
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL~~DyR 124 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYLYFDYR 124 (239)
T ss_pred hHHHhhcCeecCCCCCccccceEEEecc
Confidence 458877444 366799999876555443
No 155
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=45.26 E-value=5.4 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=15.0
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
..|||.|-..--..= .....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 457777764421110 22557999987
No 156
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=43.37 E-value=14 Score=24.85 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=28.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC--CCcCCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNS 109 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~ 109 (118)
.+..|++|...|.- -......-..|+|.++..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~-------------l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGF-------------LFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSC-------------TSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccc-------------cCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 45689999998753 1222355678999999998544 11111 3777754
No 157
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.18 E-value=7.2 Score=32.13 Aligned_cols=38 Identities=21% Similarity=0.589 Sum_probs=26.9
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceee---ecCCCCcccHhHHHHHHhC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVA---WGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~C~H~FH~~Ci~~Wl~~ 100 (118)
..|+.|...++. .+.+..+ ..+|+|.|+..|+..|...
T Consensus 227 k~CP~c~~~iek-------------~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEK-------------DGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhc-------------cCCccccccccCCcCCeeceeeecccccc
Confidence 449999988875 2333322 2359999999999998765
No 158
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=43.17 E-value=12 Score=32.25 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=26.0
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 98 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl 98 (118)
.....|.||.+.|++.--+- . +.-+ -. ..+.+.=|-+||..|+..-.
T Consensus 511 e~~~~C~IC~EkFe~v~d~e-~-~~Wm-~k--daV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQE-E-DLWM-YK--DAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecch-h-hhee-ec--ceeeeccCceeeccccchHH
Confidence 44567999999998610000 0 0000 00 01234358899999987643
No 159
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=4.9 Score=30.90 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=36.1
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecC--------CCCcccHhHHHHHHhCC-CCCcCCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--------CNHAFHFHCISRWLKTR-QVCPLDNS 109 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------C~H~FH~~Ci~~Wl~~~-~~CP~Cr~ 109 (118)
+..|.||...|.. ......+..+. |||..+..|+..=+... -.||.|+.
T Consensus 207 ~~~c~ic~~~~~~------------n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 207 EKLCEICERIYSE------------NDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHhhc------------cccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 3569999999874 12333344455 99999999999987764 57999985
No 160
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.94 E-value=13 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.968 Sum_probs=11.5
Q ss_pred cccHhHHHHHHhC
Q 033510 88 AFHFHCISRWLKT 100 (118)
Q Consensus 88 ~FH~~Ci~~Wl~~ 100 (118)
-|++.||.+|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999974
No 161
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.04 E-value=9.2 Score=30.47 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=37.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..+.|-||+..+..| +.. -.|.|.|..+|...|......||.|+..-+
T Consensus 104 ~~~~~~~~~g~l~vp------------t~~-----qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVP------------TRI-----QGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEec------------ccc-----cCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 357799999888762 222 229999999999999999999999986543
No 162
>PLN02195 cellulose synthase A
Probab=41.01 E-value=38 Score=31.07 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=35.8
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh--CCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~ 112 (118)
...|.||-+.+.. . ..++--+.--.|+--.|+.|.+ .-+ .++.||.|+..++
T Consensus 6 ~~~c~~cgd~~~~----------~-~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGV----------D-SNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCc----------C-CCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 4579999998865 0 1123234556788889999984 332 2788999998776
No 163
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=40.24 E-value=24 Score=21.94 Aligned_cols=34 Identities=29% Similarity=0.764 Sum_probs=23.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
....|.+|...... ++.| ....|.-.||..|...
T Consensus 35 ~~~~C~~C~~~~Ga-~i~C--------------~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGA-CIGC--------------SHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCe-EEEE--------------eCCCCCcEEChHHHcc
Confidence 45679999987422 1111 2367999999999755
No 164
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=39.83 E-value=16 Score=28.42 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNS 109 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~ 109 (118)
..|+|=...|..| ++-..|||+|-+.=|.+.+.. .-.||+=..
T Consensus 177 ~rdPis~~~I~nP-----------------viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 177 NRDPISKKPIVNP-----------------VISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred ccCchhhhhhhch-----------------hhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 4688888888764 455789999999999999987 445887443
No 165
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=39.79 E-value=11 Score=18.73 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=7.8
Q ss_pred CCcCCccCcc
Q 033510 103 VCPLDNSEWE 112 (118)
Q Consensus 103 ~CP~Cr~~~~ 112 (118)
.||+|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 6999987763
No 166
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=37.69 E-value=3.1 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=12.3
Q ss_pred CCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 86 NHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 86 ~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
+|.++..|-.. +.....||-|..+.++
T Consensus 16 ~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 16 GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CEEECcccccc-ceecccCCCcccHHHH
Confidence 55666666443 2334567777776553
No 167
>PRK11827 hypothetical protein; Provisional
Probab=36.73 E-value=12 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.352 Sum_probs=13.5
Q ss_pred HHHHhCCCCCcCCccCcccc
Q 033510 95 SRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 95 ~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
++||..--.||+|+.++.+.
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 35566666788888776653
No 168
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.71 E-value=47 Score=30.76 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=36.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
....|.||-+++.. . ..++--+.--.|+--.|+.|.+-=.+ .++.||.|+..++
T Consensus 14 ~~~~c~iCGd~vg~----------~-~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGV----------K-EDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCc----------C-CCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45679999999865 1 12222344456777799999943222 3789999998765
No 169
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=36.70 E-value=18 Score=21.87 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=9.3
Q ss_pred CCCCcCCccCcc
Q 033510 101 RQVCPLDNSEWE 112 (118)
Q Consensus 101 ~~~CP~Cr~~~~ 112 (118)
..+||+|..+..
T Consensus 39 ~p~CPlC~s~M~ 50 (59)
T PF14169_consen 39 EPVCPLCKSPMV 50 (59)
T ss_pred CccCCCcCCccc
Confidence 578999987653
No 170
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=36.10 E-value=4.3 Score=33.74 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=9.8
Q ss_pred eecCCCCcccHhHH
Q 033510 81 AWGVCNHAFHFHCI 94 (118)
Q Consensus 81 ~~~~C~H~FH~~Ci 94 (118)
++-.+|-.||.+|+
T Consensus 348 iLrA~GkayHp~CF 361 (468)
T KOG1701|consen 348 ILRALGKAYHPGCF 361 (468)
T ss_pred HHHhcccccCCCce
Confidence 34557778888886
No 171
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.58 E-value=21 Score=20.10 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=9.8
Q ss_pred CCCCcCCccCcc
Q 033510 101 RQVCPLDNSEWE 112 (118)
Q Consensus 101 ~~~CP~Cr~~~~ 112 (118)
...||+|.++|.
T Consensus 8 ~K~C~~C~rpf~ 19 (42)
T PF10013_consen 8 SKICPVCGRPFT 19 (42)
T ss_pred CCcCcccCCcch
Confidence 468999998875
No 172
>PRK01343 zinc-binding protein; Provisional
Probab=35.25 E-value=23 Score=21.28 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=9.3
Q ss_pred CCCCcCCccCcc
Q 033510 101 RQVCPLDNSEWE 112 (118)
Q Consensus 101 ~~~CP~Cr~~~~ 112 (118)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 457999998764
No 173
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=35.08 E-value=22 Score=27.50 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=32.0
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcC
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPL 106 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~ 106 (118)
+..|+|=++.+..| +.-..|+|.|-.+-|.+.|.. ...||.
T Consensus 189 ~nrCpitl~p~~~p-----------------ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP-----------------ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH-----------------HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 35689888887763 455789999999999999985 455774
No 174
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=34.22 E-value=15 Score=32.63 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=32.9
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCccee-eecCCCCcccHhHHHHHHh----------CCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTV-AWGVCNHAFHFHCISRWLK----------TRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~C~H~FH~~Ci~~Wl~----------~~~~CP~Cr~~~~ 112 (118)
+.+|.||.|.=.. +.+..+.|.- -.-.|...||..|-+.-=. ..+.|-+|+.-|.
T Consensus 117 nKtCYIC~E~Grp---------nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 117 NKTCYICNEEGRP---------NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred cceeeeecccCCc---------cccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 4679999988432 1112222211 1245778999999876421 2467999976554
No 175
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=34.15 E-value=48 Score=21.66 Aligned_cols=36 Identities=14% Similarity=0.514 Sum_probs=27.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
...|-||...+.+ =||.|+..|-- ....|.+|.+..
T Consensus 44 ~~~C~~CK~~v~q-----------------------~g~~YCq~CAY----kkGiCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQ-----------------------PGAKYCQTCAY----KKGICAMCGKKI 79 (90)
T ss_pred Ccccccccccccc-----------------------CCCccChhhhc----ccCcccccCCee
Confidence 4579999988754 36789999953 377899998754
No 176
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.99 E-value=28 Score=19.74 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=24.3
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
..|.+|...|.. .. ....--.||++|+..|......
T Consensus 3 ~~C~~C~~~F~~-------------~~-rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTL-------------TR-RRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccC-------------Cc-cccccCcCcCCcChHHcCCeee
Confidence 468888888854 11 1123357999999999876654
No 177
>PF15353 HECA: Headcase protein family homologue
Probab=33.86 E-value=27 Score=23.62 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=14.7
Q ss_pred cCCCCcccHhHHHHHHhC
Q 033510 83 GVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~ 100 (118)
-+.|+..|.+|++.|-..
T Consensus 38 Cp~~~~MH~~CF~~wE~~ 55 (107)
T PF15353_consen 38 CPFGQYMHRECFEKWEDS 55 (107)
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 445889999999999654
No 178
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=33.29 E-value=46 Score=18.54 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=22.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
...|.+|.+.+-. .......-..|+-.+|..|+..
T Consensus 11 ~~~C~~C~~~i~g-------------~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWG-------------LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECS-------------SSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCcccCcccCC-------------CCCCeEEECCCCChHhhhhhhh
Confidence 3569999999822 1222355578999999999754
No 179
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.14 E-value=7.2 Score=18.92 Aligned_cols=7 Identities=29% Similarity=0.709 Sum_probs=3.2
Q ss_pred CCcCCcc
Q 033510 103 VCPLDNS 109 (118)
Q Consensus 103 ~CP~Cr~ 109 (118)
.||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3555543
No 180
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.92 E-value=16 Score=21.33 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=9.8
Q ss_pred CCCCcCCccCccc
Q 033510 101 RQVCPLDNSEWEF 113 (118)
Q Consensus 101 ~~~CP~Cr~~~~~ 113 (118)
...||+|.++|.-
T Consensus 12 ~KICpvCqRPFsW 24 (54)
T COG4338 12 DKICPVCQRPFSW 24 (54)
T ss_pred hhhhhhhcCchHH
Confidence 3469999998753
No 181
>PF14369 zf-RING_3: zinc-finger
Probab=31.89 E-value=25 Score=18.73 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=7.3
Q ss_pred CCcCCccCc
Q 033510 103 VCPLDNSEW 111 (118)
Q Consensus 103 ~CP~Cr~~~ 111 (118)
+||.|...|
T Consensus 23 ~CP~C~~gF 31 (35)
T PF14369_consen 23 ACPRCHGGF 31 (35)
T ss_pred CCcCCCCcE
Confidence 499998876
No 182
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.49 E-value=19 Score=28.70 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=26.7
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
.....|.||+..-.. ......+..+.-.+|...+|..||.-
T Consensus 256 ~~~~~~~~~~~~~~~---------~~~~r~~S~I~C~~C~~~~HP~Ci~M 296 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTN---------IIQSRRNSWIVCKPCATRPHPYCVAM 296 (381)
T ss_pred cchhhhhhhhcchhh---------hhhhhhccceeecccccCCCCcchhc
Confidence 345779999987443 00112233456688999999999974
No 183
>PF14353 CpXC: CpXC protein
Probab=30.91 E-value=38 Score=22.73 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=8.5
Q ss_pred CCCcCCccCccc
Q 033510 102 QVCPLDNSEWEF 113 (118)
Q Consensus 102 ~~CP~Cr~~~~~ 113 (118)
-+||.|...+.+
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 469999876643
No 184
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=30.49 E-value=16 Score=34.70 Aligned_cols=61 Identities=26% Similarity=0.499 Sum_probs=43.6
Q ss_pred ceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC----CCCcCCccCcc
Q 033510 37 WSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNSEWE 112 (118)
Q Consensus 37 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 112 (118)
+..-..|........|-||+..... +..++-..|.-.||..|+++-+... =.||-||.+=.
T Consensus 1096 l~~~i~w~~s~~~~~c~~cr~k~~~---------------~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1096 LEAEIKWDRSAVNALCKVCRRKKQD---------------EKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred HHHHHhhccccchhhhhhhhhcccc---------------hhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 4444455556667889999988643 2234556688899999999988763 36999987643
No 185
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.32 E-value=40 Score=22.41 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=19.1
Q ss_pred CCcccHhHHHHHHhC---------CCCCcCCcc
Q 033510 86 NHAFHFHCISRWLKT---------RQVCPLDNS 109 (118)
Q Consensus 86 ~H~FH~~Ci~~Wl~~---------~~~CP~Cr~ 109 (118)
.-.|+..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 668999999998864 235999985
No 186
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=30.32 E-value=49 Score=16.55 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=5.8
Q ss_pred eecCCCCcccHhHH
Q 033510 81 AWGVCNHAFHFHCI 94 (118)
Q Consensus 81 ~~~~C~H~FH~~Ci 94 (118)
.-..|.-.+|..|+
T Consensus 17 ~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 17 RCSECDFDLHEECA 30 (30)
T ss_dssp E-TTT-----HHHH
T ss_pred ECccCCCccChhcC
Confidence 34678888998885
No 187
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=30.19 E-value=5.6 Score=23.00 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=11.2
Q ss_pred cCCCCcccHhHHHHH
Q 033510 83 GVCNHAFHFHCISRW 97 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~W 97 (118)
..|++.|+..|-..|
T Consensus 44 ~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 44 PSCGTEFCFKCGEPW 58 (64)
T ss_dssp TSCCSEECSSSTSES
T ss_pred CCCCCcCccccCccc
Confidence 338899888887666
No 188
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=29.79 E-value=35 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=22.8
Q ss_pred eeecCCCCcccHhHHHHHHhCC-----CCCcCCcc
Q 033510 80 VAWGVCNHAFHFHCISRWLKTR-----QVCPLDNS 109 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~~-----~~CP~Cr~ 109 (118)
+..-.|+-.||..|+.-|+... -.||-||.
T Consensus 36 ~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 36 LACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 4446789999999999998752 34887764
No 189
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.56 E-value=48 Score=19.33 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=13.5
Q ss_pred eeecCCCCcccHhHHHHHHh-CCCCCcCCc
Q 033510 80 VAWGVCNHAFHFHCISRWLK-TRQVCPLDN 108 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr 108 (118)
..-..|++.|+.+|= -.+. +-.+||-|.
T Consensus 22 y~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 22 YRCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp E--TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred EECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 455789999999993 2222 234688874
No 190
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.45 E-value=56 Score=20.74 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=21.0
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..=.|.|+..|.+.-| ...||.|.-++.
T Consensus 25 CtfEcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 25 CTFECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred EEEeeehhHhHHHHhh--cCcCCCCCchhh
Confidence 3345789999998755 678999977653
No 191
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=29.26 E-value=42 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=28.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 108 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr 108 (118)
...|-.|...... .....-..|.|.|+.+|=.=-=++-..||-|.
T Consensus 330 ~~~Cf~C~~~~~~---------------~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLS---------------SGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCC---------------CCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 3459889666533 11245577999999999432222345699996
No 192
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.50 E-value=22 Score=20.37 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=7.7
Q ss_pred CCCcCCccCccc
Q 033510 102 QVCPLDNSEWEF 113 (118)
Q Consensus 102 ~~CP~Cr~~~~~ 113 (118)
.+||.|.+.+..
T Consensus 3 f~CP~C~~~~~~ 14 (54)
T PF05605_consen 3 FTCPYCGKGFSE 14 (54)
T ss_pred cCCCCCCCccCH
Confidence 468888765543
No 193
>PF10071 DUF2310: Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310); InterPro: IPR016908 This group represents uncharacterised conserved proteins.
Probab=27.57 E-value=35 Score=26.52 Aligned_cols=15 Identities=20% Similarity=0.795 Sum_probs=12.5
Q ss_pred CCCCcCCccCccccc
Q 033510 101 RQVCPLDNSEWEFQK 115 (118)
Q Consensus 101 ~~~CP~Cr~~~~~~~ 115 (118)
...||.|..+|.+++
T Consensus 220 ~r~CP~Cg~~W~L~~ 234 (258)
T PF10071_consen 220 ARKCPSCGGDWRLKE 234 (258)
T ss_pred CCCCCCCCCccccCC
Confidence 567999999998764
No 194
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=27.48 E-value=50 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 85 CNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 85 C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
||+--|.-=+.++.. ...||.|+.+|+.
T Consensus 65 CGvC~~~LT~~EY~~-~~~Cp~C~spFNp 92 (105)
T COG4357 65 CGVCRKLLTRAEYGM-CGSCPYCQSPFNP 92 (105)
T ss_pred hhhhhhhhhHHHHhh-cCCCCCcCCCCCc
Confidence 665555444444432 4569999999874
No 195
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=26.99 E-value=19 Score=23.75 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=18.2
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
-.||-.|-..=| +.-+.||.|+.+|-
T Consensus 62 kkCGfef~~~~i----k~pSRCP~CKSE~I 87 (97)
T COG3357 62 KKCGFEFRDDKI----KKPSRCPKCKSEWI 87 (97)
T ss_pred cccCcccccccc----CCcccCCcchhhcc
Confidence 468888876333 23567999999884
No 196
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.59 E-value=54 Score=21.83 Aligned_cols=33 Identities=15% Similarity=0.637 Sum_probs=24.2
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
.|.||-+.+.. +.. +...+ .-..|.+|+..=..
T Consensus 8 kC~VCg~~iie-------------Gqk--FTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 8 KCYVCGGTIIE-------------GQK--FTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eEeeeCCEeee-------------ccE--EEEee-CCcchHHHHHHHHh
Confidence 49999999876 444 44455 67889999977544
No 197
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=24.14 E-value=1.2e+02 Score=18.22 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.9
Q ss_pred CcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 87 HAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 87 H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+..|.+.-| ++.||.|.-++.
T Consensus 29 CTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHh--cCcCcCCCCccc
Confidence 479999998876 778999988764
No 198
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=24.11 E-value=28 Score=18.31 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=8.0
Q ss_pred CCcCCccCcccc
Q 033510 103 VCPLDNSEWEFQ 114 (118)
Q Consensus 103 ~CP~Cr~~~~~~ 114 (118)
.||.|.+.|.+.
T Consensus 4 ~CP~C~~~~~v~ 15 (38)
T TIGR02098 4 QCPNCKTSFRVV 15 (38)
T ss_pred ECCCCCCEEEeC
Confidence 577787766554
No 199
>COG5595 Zn-ribbon-containing, possibly nucleic-acid-binding protein [General function prediction only]
Probab=24.08 E-value=35 Score=25.84 Aligned_cols=14 Identities=21% Similarity=0.921 Sum_probs=12.0
Q ss_pred CCCcCCccCccccc
Q 033510 102 QVCPLDNSEWEFQK 115 (118)
Q Consensus 102 ~~CP~Cr~~~~~~~ 115 (118)
.-||-|.++|.+++
T Consensus 219 r~CPsC~k~Wqlk~ 232 (256)
T COG5595 219 RCCPSCGKDWQLKN 232 (256)
T ss_pred CCCCcccccceecc
Confidence 45999999999875
No 200
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.51 E-value=31 Score=15.35 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=5.5
Q ss_pred CCcCCccCcc
Q 033510 103 VCPLDNSEWE 112 (118)
Q Consensus 103 ~CP~Cr~~~~ 112 (118)
.||+|...|.
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 3888877654
No 201
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.88 E-value=64 Score=25.38 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=14.7
Q ss_pred cccHhHHHHHHh-CCCCCcC
Q 033510 88 AFHFHCISRWLK-TRQVCPL 106 (118)
Q Consensus 88 ~FH~~Ci~~Wl~-~~~~CP~ 106 (118)
.=|++|+++|=. .++.||-
T Consensus 56 RGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 56 RGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred cchHHHHHHHHHHHcCCCCc
Confidence 458999999965 4788983
No 202
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=22.68 E-value=51 Score=27.62 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=23.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI 94 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci 94 (118)
-.|+||-+.|.- ..+.+..+.+..=.-.||.+|.
T Consensus 395 PrCs~C~~PI~P-----------~~G~~etvRvvamdr~fHv~CY 428 (468)
T KOG1701|consen 395 PRCSVCGNPILP-----------RDGKDETVRVVAMDRDFHVNCY 428 (468)
T ss_pred cchhhccCCccC-----------CCCCcceEEEEEccccccccce
Confidence 469999998863 1244545666666788998885
No 203
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=22.57 E-value=49 Score=17.86 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=23.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
...|.+|.+.|.. .......-..|+-..|..|..+
T Consensus 11 ~~~C~~C~~~i~~-------------~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWG-------------LFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhc-------------cccceeEcCCCCCchhhhhhcc
Confidence 3569999999864 1112233356889999999754
No 204
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=22.57 E-value=30 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=17.5
Q ss_pred HHHHHhC---CCCCcCCcc-Ccccccc
Q 033510 94 ISRWLKT---RQVCPLDNS-EWEFQKY 116 (118)
Q Consensus 94 i~~Wl~~---~~~CP~Cr~-~~~~~~~ 116 (118)
-.+||.. ..+||.||- +|++++|
T Consensus 55 ~~r~~r~~~~~~~c~~c~~~~~~~~~~ 81 (453)
T TIGR02367 55 TARAFRHHKYRKTCKRCRVSDEDINKF 81 (453)
T ss_pred HHHHHhhccccccCCCCCCCHHHHHHH
Confidence 4689887 568999984 7777765
No 205
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=22.16 E-value=32 Score=19.33 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=13.5
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCCcc
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLDNS 109 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~ 109 (118)
..|||.|-..--.. -.....||.|..
T Consensus 9 ~~Cg~~fe~~~~~~-~~~~~~CP~Cg~ 34 (52)
T TIGR02605 9 TACGHRFEVLQKMS-DDPLATCPECGG 34 (52)
T ss_pred CCCCCEeEEEEecC-CCCCCCCCCCCC
Confidence 45777765321000 012346999987
No 206
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.66 E-value=43 Score=22.49 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=7.6
Q ss_pred CCcCCccCcccc
Q 033510 103 VCPLDNSEWEFQ 114 (118)
Q Consensus 103 ~CP~Cr~~~~~~ 114 (118)
+||.|...|...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 477776666554
No 207
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.36 E-value=50 Score=20.09 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=9.1
Q ss_pred CCCCcCCccCcc
Q 033510 101 RQVCPLDNSEWE 112 (118)
Q Consensus 101 ~~~CP~Cr~~~~ 112 (118)
...||+|+++..
T Consensus 6 ~v~CP~C~k~~~ 17 (62)
T PRK00418 6 TVNCPTCGKPVE 17 (62)
T ss_pred cccCCCCCCccc
Confidence 456999998753
No 208
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.27 E-value=79 Score=21.13 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=22.3
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
.|.||-+++.. +.. +..+ =+-..|..|+..=..
T Consensus 4 kC~iCg~~I~~-------------gql--FTF~-~kG~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYE-------------GQL--FTFT-KKGPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeee-------------cce--EEEe-cCCcEeHHHHHHHHh
Confidence 49999999865 332 3333 336889999987543
No 209
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.22 E-value=66 Score=17.82 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=13.4
Q ss_pred HHHHHhCCCCCcCCccCc
Q 033510 94 ISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 94 i~~Wl~~~~~CP~Cr~~~ 111 (118)
++-|-....+||.|..+.
T Consensus 10 L~G~~ML~~~Cp~C~~PL 27 (41)
T PF06677_consen 10 LQGWTMLDEHCPDCGTPL 27 (41)
T ss_pred HHhHhHhcCccCCCCCee
Confidence 556767788899997654
No 210
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.83 E-value=1.6e+02 Score=24.97 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=34.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--------CCCCcCCccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr~~ 110 (118)
.+..|.+|+.---. .....+.--.|+-.||..|-+.-..- .-.|=+|+..
T Consensus 167 ~n~qc~vC~~g~~~-------------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPG-------------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcC-------------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 45569999976532 23345666789999999998776542 2348888653
No 211
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.83 E-value=51 Score=23.31 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.4
Q ss_pred eeecCCCCcccHh
Q 033510 80 VAWGVCNHAFHFH 92 (118)
Q Consensus 80 ~~~~~C~H~FH~~ 92 (118)
+....|||.|+.-
T Consensus 70 v~rcecghsf~d~ 82 (165)
T COG4647 70 VIRCECGHSFGDY 82 (165)
T ss_pred EEEEeccccccCh
Confidence 6778999999753
No 212
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.45 E-value=34 Score=20.46 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.4
Q ss_pred CCcCCccCccc
Q 033510 103 VCPLDNSEWEF 113 (118)
Q Consensus 103 ~CP~Cr~~~~~ 113 (118)
.||+|+++...
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 59999986654
Done!