Query 033510
Match_columns 118
No_of_seqs 176 out of 1417
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:24:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpl_R Ring-box protein 1; ubi 100.0 8.5E-30 2.9E-34 170.9 7.3 95 24-118 12-106 (106)
2 4a0k_B E3 ubiquitin-protein li 100.0 1.3E-30 4.5E-35 177.7 2.6 99 20-118 19-117 (117)
3 2ecl_A Ring-box protein 2; RNF 99.9 1.4E-24 4.8E-29 138.3 4.5 80 36-118 2-81 (81)
4 1v87_A Deltex protein 2; ring- 99.7 9.9E-18 3.4E-22 111.7 3.9 68 47-114 23-95 (114)
5 1x4j_A Ring finger protein 38; 99.7 7.2E-17 2.5E-21 100.4 4.6 52 47-113 21-72 (75)
6 2l0b_A E3 ubiquitin-protein li 99.6 1.4E-16 4.9E-21 102.9 4.9 50 48-112 39-88 (91)
7 1iym_A EL5; ring-H2 finger, ub 99.6 1.5E-16 5.2E-21 93.2 3.8 50 48-112 4-54 (55)
8 2kiz_A E3 ubiquitin-protein li 99.6 3.6E-16 1.2E-20 95.6 4.2 52 48-114 13-64 (69)
9 3ng2_A RNF4, snurf, ring finge 99.6 3.4E-16 1.2E-20 95.8 4.1 60 47-117 8-67 (71)
10 2ect_A Ring finger protein 126 99.6 4.4E-16 1.5E-20 97.3 4.5 55 48-117 14-68 (78)
11 2ecm_A Ring finger and CHY zin 99.6 4.8E-16 1.6E-20 90.9 4.0 51 48-112 4-54 (55)
12 2ct0_A Non-SMC element 1 homol 99.6 5.3E-16 1.8E-20 97.6 3.9 51 47-114 13-65 (74)
13 2ep4_A Ring finger protein 24; 99.6 7E-16 2.4E-20 95.5 3.7 50 48-112 14-63 (74)
14 2ea6_A Ring finger protein 4; 99.6 1.2E-15 4.3E-20 92.6 4.0 54 48-112 14-67 (69)
15 2xeu_A Ring finger protein 4; 99.6 7.2E-16 2.5E-20 92.4 2.6 57 49-116 3-59 (64)
16 2d8t_A Dactylidin, ring finger 99.6 9.2E-16 3.2E-20 94.5 2.6 51 48-116 14-64 (71)
17 2ysl_A Tripartite motif-contai 99.5 2.1E-14 7E-19 88.3 7.0 52 48-117 19-73 (73)
18 1chc_A Equine herpes virus-1 r 99.5 5.4E-15 1.8E-19 89.9 3.1 48 48-112 4-51 (68)
19 2djb_A Polycomb group ring fin 99.5 1.5E-14 5.3E-19 89.2 4.1 52 48-116 14-65 (72)
20 2d8s_A Cellular modulator of i 99.5 1.6E-14 5.5E-19 91.9 3.4 53 47-115 13-72 (80)
21 2ecy_A TNF receptor-associated 99.5 2.4E-14 8.2E-19 86.8 3.8 51 48-116 14-65 (66)
22 2ct2_A Tripartite motif protei 99.5 3.7E-14 1.3E-18 89.9 4.6 55 48-116 14-71 (88)
23 4ayc_A E3 ubiquitin-protein li 99.5 2.6E-14 9E-19 98.5 3.4 46 50-113 54-99 (138)
24 2csy_A Zinc finger protein 183 99.4 5.9E-14 2E-18 88.2 3.9 46 49-112 15-60 (81)
25 3lrq_A E3 ubiquitin-protein li 99.4 5.3E-14 1.8E-18 92.2 3.7 51 48-116 21-73 (100)
26 2ecw_A Tripartite motif-contai 99.4 1.9E-13 6.5E-18 85.7 6.1 50 48-115 18-73 (85)
27 2yur_A Retinoblastoma-binding 99.4 5.4E-14 1.9E-18 87.3 3.4 48 48-113 14-64 (74)
28 4ap4_A E3 ubiquitin ligase RNF 99.4 7E-14 2.4E-18 94.1 4.0 57 48-115 6-62 (133)
29 2ecv_A Tripartite motif-contai 99.4 2.2E-13 7.4E-18 85.4 5.8 51 48-116 18-74 (85)
30 1t1h_A Gspef-atpub14, armadill 99.4 1.1E-13 3.7E-18 86.3 4.1 49 48-114 7-56 (78)
31 2egp_A Tripartite motif-contai 99.4 4E-14 1.4E-18 88.1 1.0 50 48-115 11-67 (79)
32 2ecn_A Ring finger protein 141 99.4 4.6E-14 1.6E-18 86.3 1.0 48 48-114 14-61 (70)
33 2y43_A E3 ubiquitin-protein li 99.4 2.4E-13 8.3E-18 88.4 4.4 49 49-114 22-70 (99)
34 4ap4_A E3 ubiquitin ligase RNF 99.4 1.5E-13 5.2E-18 92.4 2.9 59 47-116 70-128 (133)
35 2ysj_A Tripartite motif-contai 99.4 3.7E-13 1.3E-17 80.7 4.1 42 48-107 19-63 (63)
36 1g25_A CDK-activating kinase a 99.4 5.2E-13 1.8E-17 80.6 4.8 55 48-116 2-58 (65)
37 2ckl_A Polycomb group ring fin 99.3 4.9E-13 1.7E-17 88.3 4.0 49 48-113 14-62 (108)
38 3fl2_A E3 ubiquitin-protein li 99.3 6.1E-13 2.1E-17 89.8 3.9 47 49-113 52-99 (124)
39 2ecj_A Tripartite motif-contai 99.3 5.1E-13 1.8E-17 78.5 3.0 42 48-107 14-58 (58)
40 1jm7_A BRCA1, breast cancer ty 99.3 6.2E-13 2.1E-17 87.7 3.4 49 49-115 21-72 (112)
41 3ztg_A E3 ubiquitin-protein li 99.3 1.1E-12 3.6E-17 84.1 3.2 46 48-111 12-60 (92)
42 1rmd_A RAG1; V(D)J recombinati 99.3 1.6E-12 5.6E-17 86.6 3.7 49 49-115 23-72 (116)
43 2ckl_B Ubiquitin ligase protei 99.3 2.5E-12 8.4E-17 90.7 4.1 47 49-112 54-101 (165)
44 3hct_A TNF receptor-associated 99.3 1.8E-12 6.2E-17 86.9 3.0 50 48-115 17-67 (118)
45 1z6u_A NP95-like ring finger p 99.2 3.6E-12 1.2E-16 89.3 4.0 47 50-114 79-126 (150)
46 1wgm_A Ubiquitin conjugation f 99.2 1.5E-11 5E-16 80.7 6.6 50 48-115 21-71 (98)
47 3knv_A TNF receptor-associated 99.2 1.9E-12 6.5E-17 89.9 1.5 46 48-111 30-76 (141)
48 3l11_A E3 ubiquitin-protein li 99.2 1.6E-12 5.5E-17 86.6 0.7 46 49-112 15-61 (115)
49 2kr4_A Ubiquitin conjugation f 99.2 9.3E-12 3.2E-16 79.5 4.0 50 48-115 13-62 (85)
50 2kre_A Ubiquitin conjugation f 99.2 1.8E-11 6.1E-16 80.5 3.9 49 48-114 28-76 (100)
51 1e4u_A Transcriptional repress 99.2 2.2E-11 7.7E-16 76.8 3.7 54 48-115 10-64 (78)
52 2vje_A E3 ubiquitin-protein li 99.1 1.6E-11 5.5E-16 74.4 2.9 47 48-112 7-56 (64)
53 2y1n_A E3 ubiquitin-protein li 99.1 1.9E-11 6.4E-16 97.3 4.1 49 49-115 332-381 (389)
54 1jm7_B BARD1, BRCA1-associated 99.1 7.4E-12 2.5E-16 83.8 1.3 48 48-115 21-69 (117)
55 1bor_A Transcription factor PM 99.1 1.3E-11 4.3E-16 72.9 1.2 47 48-115 5-51 (56)
56 4ic3_A E3 ubiquitin-protein li 99.1 2.4E-11 8.4E-16 75.4 1.2 43 48-112 23-66 (74)
57 2vje_B MDM4 protein; proto-onc 99.1 6.5E-11 2.2E-15 71.5 2.6 49 48-112 6-55 (63)
58 1vyx_A ORF K3, K3RING; zinc-bi 99.0 1.2E-10 4.2E-15 70.0 2.9 50 47-114 4-60 (60)
59 3hcs_A TNF receptor-associated 99.0 1.5E-10 5E-15 81.8 3.2 49 48-114 17-66 (170)
60 2yu4_A E3 SUMO-protein ligase 99.0 2.4E-10 8.4E-15 73.9 3.1 45 48-110 6-59 (94)
61 2c2l_A CHIP, carboxy terminus 99.0 3.2E-10 1.1E-14 84.4 3.9 50 48-115 207-257 (281)
62 2ecg_A Baculoviral IAP repeat- 99.0 1.1E-10 3.9E-15 72.4 0.9 43 49-113 25-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.9 3E-10 1E-14 89.4 0.9 55 48-112 307-372 (381)
64 2f42_A STIP1 homology and U-bo 98.8 2.5E-09 8.5E-14 77.1 3.9 50 48-115 105-155 (179)
65 2ea5_A Cell growth regulator w 98.8 2.8E-09 9.6E-14 65.3 2.9 43 48-112 14-57 (68)
66 2yho_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 68.4 1.2 42 49-112 18-60 (79)
67 2bay_A PRE-mRNA splicing facto 98.7 5.7E-09 2E-13 62.8 2.5 49 50-116 4-53 (61)
68 3nw0_A Non-structural maintena 98.6 1.1E-08 3.9E-13 76.5 2.9 50 49-115 180-231 (238)
69 1wim_A KIAA0161 protein; ring 98.6 1.8E-08 6E-13 64.7 2.6 47 49-110 5-61 (94)
70 3htk_C E3 SUMO-protein ligase 98.6 1.7E-08 5.7E-13 76.7 2.7 50 48-114 180-233 (267)
71 3t6p_A Baculoviral IAP repeat- 98.6 8.7E-09 3E-13 80.8 1.1 43 48-112 294-337 (345)
72 3vk6_A E3 ubiquitin-protein li 98.2 1.6E-06 5.6E-11 56.9 4.0 46 51-113 3-49 (101)
73 2lri_C Autoimmune regulator; Z 95.4 0.007 2.4E-07 36.4 2.0 45 48-110 11-59 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.012 4.2E-07 37.3 1.6 36 48-98 2-38 (101)
75 2ko5_A Ring finger protein Z; 93.5 0.028 9.6E-07 36.3 1.5 44 48-111 27-71 (99)
76 1weu_A Inhibitor of growth fam 93.0 0.16 5.3E-06 32.4 4.5 24 85-110 57-85 (91)
77 2l5u_A Chromodomain-helicase-D 92.3 0.057 1.9E-06 31.7 1.6 46 47-110 9-58 (61)
78 1mm2_A MI2-beta; PHD, zinc fin 90.9 0.035 1.2E-06 32.6 -0.4 46 47-110 7-56 (61)
79 2k16_A Transcription initiatio 90.0 0.076 2.6E-06 32.1 0.6 49 49-112 18-70 (75)
80 2puy_A PHD finger protein 21A; 89.6 0.021 7.1E-07 33.4 -2.2 47 46-110 2-52 (60)
81 3o36_A Transcription intermedi 89.5 0.074 2.5E-06 37.4 0.3 45 48-110 3-51 (184)
82 2yt5_A Metal-response element- 89.1 0.17 5.8E-06 29.7 1.6 51 47-110 4-61 (66)
83 2ysm_A Myeloid/lymphoid or mix 89.0 0.12 4E-06 33.5 1.0 39 46-99 4-42 (111)
84 3u5n_A E3 ubiquitin-protein li 88.9 0.077 2.6E-06 38.1 -0.0 46 47-110 5-54 (207)
85 2yql_A PHD finger protein 21A; 88.6 0.029 9.8E-07 32.3 -2.0 45 47-109 7-55 (56)
86 1f62_A Transcription factor WS 88.4 0.25 8.7E-06 27.5 2.0 30 80-109 16-49 (51)
87 3m62_A Ubiquitin conjugation f 87.2 0.57 1.9E-05 41.1 4.3 47 50-114 892-939 (968)
88 2e6s_A E3 ubiquitin-protein li 86.5 0.21 7.2E-06 30.7 0.9 50 45-109 22-76 (77)
89 1xwh_A Autoimmune regulator; P 86.2 0.082 2.8E-06 31.4 -1.1 45 47-109 6-54 (66)
90 1fp0_A KAP-1 corepressor; PHD 84.9 0.26 8.9E-06 31.2 0.8 47 46-110 22-72 (88)
91 1wil_A KIAA1045 protein; ring 84.8 0.68 2.3E-05 29.3 2.6 35 47-97 13-47 (89)
92 1wep_A PHF8; structural genomi 84.5 0.92 3.1E-05 27.6 3.2 47 50-111 13-64 (79)
93 3v43_A Histone acetyltransfera 84.4 2.2 7.6E-05 27.5 5.2 39 48-95 4-42 (112)
94 3asl_A E3 ubiquitin-protein li 84.1 0.22 7.5E-06 30.0 0.2 31 80-110 34-69 (70)
95 2vpb_A Hpygo1, pygopus homolog 84.0 0.77 2.6E-05 27.2 2.6 34 48-95 7-41 (65)
96 2lbm_A Transcriptional regulat 83.8 1.2 4E-05 30.5 3.8 45 47-109 61-116 (142)
97 2dar_A PDZ and LIM domain prot 83.7 0.64 2.2E-05 28.5 2.2 39 48-112 24-62 (90)
98 1we9_A PHD finger family prote 83.2 0.53 1.8E-05 27.3 1.6 49 48-110 5-58 (64)
99 3lqh_A Histone-lysine N-methyl 83.2 0.49 1.7E-05 33.6 1.7 48 50-110 3-63 (183)
100 3shb_A E3 ubiquitin-protein li 82.9 0.25 8.6E-06 30.4 0.1 32 79-110 41-77 (77)
101 2ku3_A Bromodomain-containing 82.3 1.2 4.2E-05 26.7 3.1 51 46-109 13-65 (71)
102 1weo_A Cellulose synthase, cat 82.0 2.9 9.8E-05 26.6 4.8 54 48-112 15-69 (93)
103 3v43_A Histone acetyltransfera 81.9 0.35 1.2E-05 31.4 0.5 30 80-109 78-111 (112)
104 2ro1_A Transcription intermedi 80.2 0.34 1.2E-05 34.4 0.0 44 49-110 2-49 (189)
105 1x62_A C-terminal LIM domain p 80.0 1.6 5.4E-05 25.9 3.0 10 51-60 17-26 (79)
106 2e6r_A Jumonji/ARID domain-con 78.4 0.2 7E-06 31.7 -1.5 48 47-109 14-65 (92)
107 1x64_A Alpha-actinin-2 associa 78.0 4.7 0.00016 24.3 4.8 37 50-112 26-62 (89)
108 2lv9_A Histone-lysine N-methyl 76.9 0.86 2.9E-05 29.0 1.2 31 79-109 42-75 (98)
109 3ask_A E3 ubiquitin-protein li 76.6 0.58 2E-05 34.5 0.3 31 80-110 190-225 (226)
110 2l43_A N-teminal domain from h 76.4 2 6.7E-05 26.8 2.7 50 48-110 24-75 (88)
111 2xb1_A Pygopus homolog 2, B-ce 75.1 1.1 3.6E-05 28.9 1.2 49 50-112 4-63 (105)
112 2kgg_A Histone demethylase jar 74.6 0.92 3.1E-05 25.4 0.7 25 84-108 24-52 (52)
113 1wev_A Riken cDNA 1110020M19; 74.1 1.1 3.9E-05 27.9 1.1 49 49-110 16-72 (88)
114 1z2q_A LM5-1; membrane protein 74.0 1.9 6.5E-05 26.5 2.2 43 41-97 13-55 (84)
115 2kwj_A Zinc finger protein DPF 73.0 2.7 9.1E-05 27.2 2.8 40 50-97 2-41 (114)
116 3ql9_A Transcriptional regulat 73.0 3.9 0.00013 27.4 3.7 29 81-109 71-110 (129)
117 4gne_A Histone-lysine N-methyl 71.9 1.8 6.1E-05 28.2 1.7 41 47-108 13-60 (107)
118 2gmg_A Hypothetical protein PF 71.4 0.8 2.7E-05 29.9 -0.1 25 83-112 71-95 (105)
119 3i2d_A E3 SUMO-protein ligase 70.6 3.7 0.00013 32.3 3.6 37 80-116 263-303 (371)
120 2yw8_A RUN and FYVE domain-con 70.3 2.7 9.2E-05 25.6 2.2 42 42-97 12-53 (82)
121 2cs3_A Protein C14ORF4, MY039 69.4 3.8 0.00013 25.6 2.7 37 50-100 16-52 (93)
122 4fo9_A E3 SUMO-protein ligase 69.0 4.2 0.00014 31.8 3.6 37 80-116 229-269 (360)
123 1wyh_A SLIM 2, skeletal muscle 67.1 2.2 7.4E-05 24.6 1.2 40 49-112 5-44 (72)
124 1x4u_A Zinc finger, FYVE domai 66.3 3.3 0.00011 25.3 2.0 42 41-96 6-47 (84)
125 1nyp_A Pinch protein; LIM doma 66.0 2.1 7.2E-05 24.3 1.0 37 50-112 6-42 (66)
126 3t7l_A Zinc finger FYVE domain 65.9 3.1 0.0001 25.9 1.8 42 43-98 14-55 (90)
127 2d8z_A Four and A half LIM dom 65.8 3.5 0.00012 23.6 2.0 37 50-112 6-42 (70)
128 2cor_A Pinch protein; LIM doma 64.2 3.1 0.00011 24.7 1.6 38 49-112 15-52 (79)
129 2cu8_A Cysteine-rich protein 2 63.0 2.9 9.8E-05 24.5 1.2 39 49-112 9-47 (76)
130 2d8x_A Protein pinch; LIM doma 62.7 2.2 7.5E-05 24.5 0.7 38 49-112 5-42 (70)
131 1wig_A KIAA1808 protein; LIM d 62.6 3.1 0.00011 24.3 1.4 37 50-112 6-42 (73)
132 1wem_A Death associated transc 62.1 7.9 0.00027 22.9 3.2 45 50-110 17-70 (76)
133 2l4z_A DNA endonuclease RBBP8, 62.0 6.2 0.00021 25.7 2.9 39 49-112 61-99 (123)
134 2zet_C Melanophilin; complex, 61.7 5.2 0.00018 27.5 2.5 34 48-94 67-100 (153)
135 1wen_A Inhibitor of growth fam 61.6 2.3 7.8E-05 25.5 0.6 24 85-110 37-65 (71)
136 1joc_A EEA1, early endosomal a 61.5 3.9 0.00013 27.0 1.8 41 43-97 63-103 (125)
137 2o35_A Hypothetical protein DU 61.2 3.4 0.00012 26.7 1.4 13 88-100 42-54 (105)
138 3fyb_A Protein of unknown func 61.0 3.5 0.00012 26.7 1.4 12 88-99 41-52 (104)
139 1x4k_A Skeletal muscle LIM-pro 59.7 3.3 0.00011 23.8 1.1 39 50-112 6-44 (72)
140 1x63_A Skeletal muscle LIM-pro 59.5 4.1 0.00014 24.0 1.5 39 50-112 16-54 (82)
141 1y02_A CARP2, FYVE-ring finger 59.0 0.86 2.9E-05 30.3 -1.8 48 46-107 16-63 (120)
142 1wd2_A Ariadne-1 protein homol 58.1 1.2 4.1E-05 25.9 -1.1 38 50-100 7-47 (60)
143 2cur_A Skeletal muscle LIM-pro 56.3 2.8 9.5E-05 24.0 0.3 38 49-112 5-42 (69)
144 1x6a_A LIMK-2, LIM domain kina 56.0 3.6 0.00012 24.3 0.8 36 50-111 16-51 (81)
145 2dlo_A Thyroid receptor-intera 56.0 2.8 9.7E-05 24.8 0.3 38 49-112 15-52 (81)
146 1zbd_B Rabphilin-3A; G protein 55.5 5.8 0.0002 26.6 1.9 35 48-95 54-88 (134)
147 3kv5_D JMJC domain-containing 54.3 6.8 0.00023 31.7 2.4 30 80-109 53-87 (488)
148 1v6g_A Actin binding LIM prote 54.0 4.2 0.00014 24.0 0.9 37 50-112 16-52 (81)
149 1g47_A Pinch protein; LIM doma 52.1 6.5 0.00022 22.7 1.5 41 48-112 10-50 (77)
150 1x61_A Thyroid receptor intera 51.9 4.9 0.00017 23.0 0.9 40 49-112 5-44 (72)
151 3c6w_A P28ING5, inhibitor of g 51.7 1.7 6E-05 25.0 -1.1 23 85-109 30-57 (59)
152 2vnf_A ING 4, P29ING4, inhibit 51.6 1.6 5.6E-05 25.1 -1.2 23 85-109 31-58 (60)
153 1vfy_A Phosphatidylinositol-3- 50.8 11 0.00036 22.3 2.4 34 49-96 11-44 (73)
154 1iml_A CRIP, cysteine rich int 50.3 4.2 0.00014 23.7 0.5 19 86-112 20-38 (76)
155 2cuq_A Four and A half LIM dom 50.0 5.5 0.00019 23.3 1.0 37 50-112 16-52 (80)
156 1z60_A TFIIH basal transcripti 49.7 9.8 0.00033 22.0 2.0 42 50-107 16-58 (59)
157 1x3h_A Leupaxin; paxillin fami 48.6 4.8 0.00016 23.6 0.5 37 50-112 16-52 (80)
158 2g6q_A Inhibitor of growth pro 48.5 2.1 7.2E-05 24.9 -1.1 23 85-109 32-59 (62)
159 3mpx_A FYVE, rhogef and PH dom 48.4 3.7 0.00013 31.7 0.0 54 42-109 368-428 (434)
160 2lcq_A Putative toxin VAPC6; P 47.1 5.2 0.00018 27.2 0.6 29 82-118 135-163 (165)
161 2l3k_A Rhombotin-2, linker, LI 45.5 6 0.0002 25.5 0.7 38 50-111 9-46 (123)
162 2jmo_A Parkin; IBR, E3 ligase, 45.3 1.4 4.9E-05 26.8 -2.3 15 84-98 55-69 (80)
163 2ehe_A Four and A half LIM dom 45.2 7.5 0.00026 22.9 1.0 39 50-112 16-54 (82)
164 2co8_A NEDD9 interacting prote 44.4 6.4 0.00022 23.5 0.6 39 49-112 15-53 (82)
165 3f6q_B LIM and senescent cell 43.3 12 0.00042 21.0 1.8 41 48-112 10-50 (72)
166 2pk7_A Uncharacterized protein 43.3 5.7 0.00019 23.7 0.2 20 95-114 2-21 (69)
167 2ri7_A Nucleosome-remodeling f 42.6 12 0.00042 25.4 2.0 47 48-109 7-58 (174)
168 1zfo_A LAsp-1; LIM domain, zin 41.9 8 0.00027 19.1 0.7 28 50-94 4-31 (31)
169 2dj7_A Actin-binding LIM prote 41.8 7.2 0.00024 23.2 0.6 39 49-112 15-53 (80)
170 3zyq_A Hepatocyte growth facto 41.0 13 0.00044 26.7 1.9 36 48-97 163-198 (226)
171 3mjh_B Early endosome antigen 40.9 7.1 0.00024 20.2 0.4 11 102-112 6-16 (34)
172 2d8y_A Eplin protein; LIM doma 40.4 11 0.00037 22.7 1.2 38 49-111 15-52 (91)
173 1x4l_A Skeletal muscle LIM-pro 40.4 10 0.00035 21.6 1.1 41 50-112 6-46 (72)
174 1wfk_A Zinc finger, FYVE domai 39.6 17 0.00058 22.4 2.1 35 48-96 8-42 (88)
175 2lq6_A Bromodomain-containing 39.4 7.1 0.00024 24.1 0.3 33 50-96 18-50 (87)
176 1y8f_A UNC-13 homolog A, MUNC1 39.2 40 0.0014 19.2 3.6 46 29-96 13-58 (66)
177 2db6_A SH3 and cysteine rich d 38.9 22 0.00077 20.9 2.5 34 50-96 29-62 (74)
178 2jny_A Uncharacterized BCR; st 38.4 5.4 0.00019 23.7 -0.4 20 95-114 4-23 (67)
179 1a7i_A QCRP2 (LIM1); LIM domai 37.8 4.4 0.00015 23.9 -0.9 40 48-112 6-45 (81)
180 1m3v_A FLIN4, fusion of the LI 37.5 21 0.00071 22.7 2.3 25 87-111 55-79 (122)
181 1x68_A FHL5 protein; four-and- 37.4 12 0.0004 21.7 1.0 41 50-112 6-46 (76)
182 1dvp_A HRS, hepatocyte growth 37.3 14 0.00049 26.2 1.6 35 48-96 160-194 (220)
183 1j2o_A FLIN2, fusion of rhombo 35.7 16 0.00053 23.1 1.5 37 50-111 4-40 (114)
184 3o70_A PHD finger protein 13; 35.7 19 0.00065 21.0 1.8 45 49-109 19-66 (68)
185 1wee_A PHD finger family prote 35.5 11 0.00039 22.0 0.8 31 80-110 32-66 (72)
186 2cup_A Skeletal muscle LIM-pro 35.0 17 0.00057 22.1 1.5 25 86-112 53-77 (101)
187 2ct7_A Ring finger protein 31; 34.9 3.5 0.00012 25.3 -1.7 18 83-100 47-64 (86)
188 3a1b_A DNA (cytosine-5)-methyl 34.9 25 0.00086 24.3 2.5 17 84-100 98-114 (159)
189 2kpi_A Uncharacterized protein 34.3 4.1 0.00014 23.3 -1.4 19 96-114 5-23 (56)
190 2enz_A NPKC-theta, protein kin 33.9 59 0.002 18.3 3.7 34 50-96 24-57 (65)
191 1wfl_A Zinc finger protein 216 33.6 59 0.002 19.6 3.8 12 50-61 26-37 (74)
192 2eli_A Protein kinase C alpha 32.1 82 0.0028 18.8 4.4 48 27-96 15-62 (85)
193 2cs2_A Poly [ADP-ribose] polym 31.2 1.1E+02 0.0038 20.2 5.2 14 48-61 26-39 (134)
194 2egq_A FHL1 protein; LIM domai 30.8 18 0.00062 20.7 1.1 41 50-112 16-57 (77)
195 2jr6_A UPF0434 protein NMA0874 30.7 5.1 0.00018 23.8 -1.4 18 97-114 4-21 (68)
196 2iyb_E Testin, TESS, TES; LIM 27.8 14 0.00048 20.7 0.2 39 50-112 3-43 (65)
197 2pv0_B DNA (cytosine-5)-methyl 26.9 41 0.0014 26.5 2.8 16 84-99 112-127 (386)
198 2hf1_A Tetraacyldisaccharide-1 26.0 5.2 0.00018 23.8 -2.0 14 101-114 8-21 (68)
199 2js4_A UPF0434 protein BB2007; 25.6 5.7 0.0002 23.8 -1.9 18 97-114 4-21 (70)
200 3uej_A NPKC-delta, protein kin 25.2 90 0.0031 17.5 3.5 35 49-96 20-54 (65)
201 2vrw_B P95VAV, VAV1, proto-onc 24.8 56 0.0019 24.8 3.2 36 48-96 356-391 (406)
202 3kqi_A GRC5, PHD finger protei 24.0 40 0.0014 19.7 1.8 31 80-110 26-61 (75)
203 1ptq_A Protein kinase C delta 23.7 88 0.003 16.3 3.5 34 50-96 12-45 (50)
204 2kdx_A HYPA, hydrogenase/ureas 23.2 34 0.0012 21.9 1.5 22 83-110 77-99 (119)
205 1lv3_A Hypothetical protein YA 23.2 22 0.00075 21.2 0.5 11 102-112 10-20 (68)
206 1wew_A DNA-binding family prot 23.0 30 0.001 20.5 1.1 27 84-110 37-72 (78)
207 2jtn_A LIM domain-binding prot 22.9 36 0.0012 23.1 1.6 13 49-61 60-72 (182)
208 2rgt_A Fusion of LIM/homeobox 22.7 26 0.0009 23.5 0.9 24 86-111 52-75 (169)
209 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.2 64 0.0022 20.1 2.7 26 84-109 7-43 (140)
210 2csz_A Synaptotagmin-like prot 22.2 50 0.0017 20.0 1.9 35 46-93 22-56 (76)
211 1pft_A TFIIB, PFTFIIBN; N-term 21.3 24 0.00081 19.0 0.3 12 80-91 25-36 (50)
212 2d8v_A Zinc finger FYVE domain 21.0 55 0.0019 19.4 1.9 30 48-96 7-37 (67)
213 3pwf_A Rubrerythrin; non heme 20.6 35 0.0012 23.5 1.1 24 80-110 139-162 (170)
No 1
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.96 E-value=8.5e-30 Score=170.88 Aligned_cols=95 Identities=92% Similarity=1.647 Sum_probs=83.8
Q ss_pred CCCCCCcceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCC
Q 033510 24 SSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 103 (118)
Q Consensus 24 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~ 103 (118)
......+||+|++|++++.|+|+.+++.|+||++.|.++|+.|+.+....+++++.+++++|+|.||.+||.+||..+.+
T Consensus 12 ~~~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~ 91 (106)
T 3dpl_R 12 NSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 91 (106)
T ss_dssp -----CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSB
T ss_pred ccccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCc
Confidence 34556899999999999999999999999999999999999999888888888888999999999999999999999999
Q ss_pred CcCCccCccccccCC
Q 033510 104 CPLDNSEWEFQKYGH 118 (118)
Q Consensus 104 CP~Cr~~~~~~~~~~ 118 (118)
||+||++|.++++||
T Consensus 92 CP~Cr~~~~~~~~g~ 106 (106)
T 3dpl_R 92 CPLDNREWEFQKYGH 106 (106)
T ss_dssp CSSSCSBCCEEECCC
T ss_pred CcCCCCcceeecCCC
Confidence 999999999999986
No 2
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.96 E-value=1.3e-30 Score=177.66 Aligned_cols=99 Identities=88% Similarity=1.579 Sum_probs=20.6
Q ss_pred CCCCCCCCCCcceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 20 AGPSSSSKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 20 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
+..+....+.++|+|++|++++.|+|++.++.|+||++.|.++|+.|+.+.++.+++++.+++++|+|.||.+||.+||.
T Consensus 19 ~~~~~~~~~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 19 GRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp ---------CCSEEEEEEEEEEEEEECCCC--------------------------------------------------
T ss_pred CCCCCCCCcCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH
Confidence 33444555679999999999999999999999999999999999999998888888888899999999999999999999
Q ss_pred CCCCCcCCccCccccccCC
Q 033510 100 TRQVCPLDNSEWEFQKYGH 118 (118)
Q Consensus 100 ~~~~CP~Cr~~~~~~~~~~ 118 (118)
.+.+||+||++|.+++++|
T Consensus 99 ~~~~CP~Cr~~~~~~k~g~ 117 (117)
T 4a0k_B 99 TRQVCPLDNREWEFQKYGH 117 (117)
T ss_dssp -------------------
T ss_pred cCCcCCCCCCeeeeeccCC
Confidence 9999999999999999986
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=138.34 Aligned_cols=80 Identities=44% Similarity=1.120 Sum_probs=69.8
Q ss_pred eceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 36 KWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 36 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
++++++.|+|+.+++.|+||++.|.++|+.|..... +++..+++++|||.||.+||.+||..+.+||+||++|.+++
T Consensus 2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~---~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTC---TTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CcceeEEeeecCCCCCCcccChhhhccCcccccccC---CCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 478899999999999999999999999999976532 23445666789999999999999999999999999999999
Q ss_pred cCC
Q 033510 116 YGH 118 (118)
Q Consensus 116 ~~~ 118 (118)
++|
T Consensus 79 ~g~ 81 (81)
T 2ecl_A 79 IGK 81 (81)
T ss_dssp EEC
T ss_pred cCC
Confidence 876
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.69 E-value=9.9e-18 Score=111.73 Aligned_cols=68 Identities=18% Similarity=0.328 Sum_probs=47.7
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH-----hCCCCCcCCccCcccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----KTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----~~~~~CP~Cr~~~~~~ 114 (118)
..++.|+||++.|..+...+.............+.+++|+|.||.+||.+|+ ..+.+||+||+.|...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3567899999999875332222111111222335579999999999999999 4577999999998654
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.2e-17 Score=100.42 Aligned_cols=52 Identities=25% Similarity=0.616 Sum_probs=43.9
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
.++..|+||++.|.. +. .+..++|||.||..||.+|+..+.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~-------------~~--~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFES-------------RQ--LLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCB-------------TC--EEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCC-------------CC--eEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 356789999999965 22 35668899999999999999999999999998753
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=102.90 Aligned_cols=50 Identities=26% Similarity=0.602 Sum_probs=42.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
.+..|+||++.|.. +. .+..++|||.||..||.+|+..+.+||+||++|.
T Consensus 39 ~~~~C~IC~~~~~~-------------~~--~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-------------GD--VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT-------------TC--EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC-------------CC--cEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 55779999999965 22 3566889999999999999999999999999874
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.63 E-value=1.5e-16 Score=93.15 Aligned_cols=50 Identities=32% Similarity=0.692 Sum_probs=41.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeec-CCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
++..|+||++.|.. ++. +..+ .|||.||..||.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~-------------~~~--~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELED-------------GEE--ARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCT-------------TSC--CEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccC-------------CCc--eEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45689999999975 222 3445 49999999999999999999999999864
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-16 Score=95.59 Aligned_cols=52 Identities=33% Similarity=0.698 Sum_probs=43.6
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
.+..|+||++.|.. +. .++.++|||.||..||.+|+..+.+||+||.+|...
T Consensus 13 ~~~~C~IC~~~~~~-------------~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEE-------------GE--DVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCS-------------SS--CEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccC-------------CC--cEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45679999999964 22 266789999999999999999999999999988653
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.61 E-value=3.4e-16 Score=95.84 Aligned_cols=60 Identities=20% Similarity=0.460 Sum_probs=48.1
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccccC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~~ 117 (118)
.++..|+||++.|.++. .....++.++|||.||..||.+|+..+.+||+||.++...++.
T Consensus 8 ~~~~~C~IC~~~~~~~~-----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIV-----------QNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHH-----------TTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccc-----------cccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 35577999999998731 0122357799999999999999999999999999998876654
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=4.4e-16 Score=97.27 Aligned_cols=55 Identities=29% Similarity=0.566 Sum_probs=45.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~~ 117 (118)
.+..|+||++.|.. .. .+..++|||.||..||.+|+..+.+||+||+++..+.+.
T Consensus 14 ~~~~C~IC~~~~~~-------------~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 14 SGLECPVCKEDYAL-------------GE--SVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSCCCTTTTSCCCT-------------TS--CEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCeeCCccccC-------------CC--CEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45679999999975 22 256678999999999999999999999999998766543
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.60 E-value=4.8e-16 Score=90.89 Aligned_cols=51 Identities=27% Similarity=0.461 Sum_probs=42.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
.+..|+||++.|.. + ...++.++|||.||..||.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~-------------~-~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-------------S-RVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCT-------------T-TSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcC-------------C-CcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999964 2 224677899999999999999999999999998763
No 12
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-16 Score=97.62 Aligned_cols=51 Identities=24% Similarity=0.765 Sum_probs=43.1
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC--CCCcCCccCcccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNSEWEFQ 114 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~~~~~ 114 (118)
...+.|+||++.|.. +..+ ..|+|.||.+||.+||+++ .+||+||++|.++
T Consensus 13 ~~i~~C~IC~~~i~~-------------g~~C----~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ-------------GQSC----ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSS-------------SEEC----SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHccc-------------CCcc----CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 355789999999964 4444 3899999999999999987 8999999999864
No 13
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7e-16 Score=95.47 Aligned_cols=50 Identities=34% Similarity=0.779 Sum_probs=42.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
.+..|+||++.|.. .. .+..++|+|.||..||.+|+..+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~-------------~~--~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKP-------------RD--ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCS-------------SS--CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCC-------------CC--cEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 45679999999965 22 2455789999999999999999999999999864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=92.56 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=43.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
....|+||++.|.++. .....++.++|||.||..||.+|+..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~~-----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIV-----------QNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHT-----------TTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccc-----------cccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4567999999998721 01123577999999999999999999999999999875
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.57 E-value=7.2e-16 Score=92.36 Aligned_cols=57 Identities=21% Similarity=0.519 Sum_probs=45.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
+..|+||++.|.++.. ....++.++|||.||..||.+|+..+.+||+||+++....+
T Consensus 3 ~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCBCTTTCCBHHHHHH-----------TTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCccChhhhCccc-----------cCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 4679999999987311 11235678999999999999999999999999999876554
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-16 Score=94.51 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=43.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
.+..|+||++.|.+ ++.++|||.||..||.+|+..+.+||+||..+....+
T Consensus 14 ~~~~C~IC~~~~~~------------------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVH------------------PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSS------------------EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCC------------------CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 45679999999866 5567899999999999999999999999998875544
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=88.33 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=43.6
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh---CCCCCcCCccCccccccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNSEWEFQKYG 117 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~~~~~~~~ 117 (118)
.+..|+||++.|.+ ++.++|||.||..||.+|+. ....||+||.++....++
T Consensus 19 ~~~~C~IC~~~~~~------------------~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 19 EEVICPICLDILQK------------------PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCBCTTTCSBCSS------------------EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred cCCEeccCCcccCC------------------eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 45679999999966 55679999999999999997 356899999998876653
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.51 E-value=5.4e-15 Score=89.94 Aligned_cols=48 Identities=33% Similarity=0.730 Sum_probs=41.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
.+..|+||++.+.+ ..+.++|||.||..||.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~-----------------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN-----------------YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS-----------------CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC-----------------CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45789999999865 1467899999999999999999999999998875
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=89.17 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=43.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
+...|+||++.|.+ .+.+++|||.||..||.+|+..+..||+||+.+.....
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLID-----------------ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSS-----------------CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHC-----------------cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 34679999999965 13445999999999999999999999999998875543
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=91.90 Aligned_cols=53 Identities=26% Similarity=0.565 Sum_probs=42.9
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCC-----CcccHhHHHHHHhCC--CCCcCCccCccccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNSEWEFQK 115 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~Cr~~~~~~~ 115 (118)
.+++.|.||+++|.+ ++ .++++|+ |.||..||++||..+ .+||+||.+|.++.
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~---~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDD-------------ES---PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCS-------------SS---CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccC-------------CC---eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 356789999999864 22 2358896 999999999999875 48999999998765
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-14 Score=86.83 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=42.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~~~~~ 116 (118)
+...|+||++.|.+ ++.++|||.||..||.+|+. .+..||+||+++...++
T Consensus 14 ~~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS------------------PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESS------------------CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcC------------------eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34579999999976 34479999999999999995 56789999999876553
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.7e-14 Score=89.87 Aligned_cols=55 Identities=18% Similarity=0.407 Sum_probs=44.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC---CCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~Cr~~~~~~~~ 116 (118)
+...|+||++.|.+ . ...++.++|||.||..||.+|+..+ ..||+||+.+....+
T Consensus 14 ~~~~C~IC~~~~~~-------------~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 14 EVLECPICMESFTE-------------E-QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp SCCBCTTTCCBCCT-------------T-SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred CCCCCccCCccccc-------------c-CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 34679999999975 2 2235668999999999999999875 789999998876543
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.46 E-value=2.6e-14 Score=98.46 Aligned_cols=46 Identities=26% Similarity=0.658 Sum_probs=41.2
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
..|+||++.|.+ ++.++|||.||..||..|+..+.+||+||.++..
T Consensus 54 ~~C~iC~~~~~~------------------~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE------------------AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS------------------EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC------------------ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 469999999976 5668999999999999999999999999998753
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.9e-14 Score=88.25 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=40.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+||++.|.+ ++.++|||.||..||.+|+.....||+||..+.
T Consensus 15 ~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN------------------PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS------------------EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC------------------eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4579999999966 556899999999999999999999999999864
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.44 E-value=5.3e-14 Score=92.15 Aligned_cols=51 Identities=27% Similarity=0.640 Sum_probs=43.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeee-cCCCCcccHhHHHHHHhCC-CCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAW-GVCNHAFHFHCISRWLKTR-QVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~~~~~ 116 (118)
++..|+||++.|.+ ++. ++|||.||..||.+|+... ..||+||..+....+
T Consensus 21 ~~~~C~IC~~~~~~------------------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRD------------------ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccC------------------ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 34679999999976 555 9999999999999999987 699999998876543
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.9e-13 Score=85.66 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=42.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC------CCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~~~ 115 (118)
.+..|+||++.|.+ ++.++|||.||..||..|+.. ...||+||..+....
T Consensus 18 ~~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKE------------------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSS------------------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCc------------------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 45679999999976 446889999999999999987 678999999886543
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.43 E-value=5.4e-14 Score=87.29 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=40.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecC-CCCcccHhHHHHHHhCC--CCCcCCccCccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTR--QVCPLDNSEWEF 113 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~~~~ 113 (118)
.+..|+||++.|.+ ++.++ |||.||..||.+|+..+ ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTD------------------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTT------------------CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhC------------------CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34679999999976 45577 99999999999999865 689999997543
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.43 E-value=7e-14 Score=94.10 Aligned_cols=57 Identities=19% Similarity=0.445 Sum_probs=45.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
++..|+||++.|.+|.. ....++.++|||.||..||.+|+..+.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHH-----------TTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccc-----------cccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 45679999999987200 1122477899999999999999999999999999887544
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=85.38 Aligned_cols=51 Identities=20% Similarity=0.403 Sum_probs=42.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC------CCCCcCCccCcccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~~~~ 116 (118)
....|+||++.|.+ ++.++|||.||..||..|+.. ...||+||..+....+
T Consensus 18 ~~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLTQ------------------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCSS------------------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccCC------------------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 34679999999966 445789999999999999987 7899999998876544
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.42 E-value=1.1e-13 Score=86.26 Aligned_cols=49 Identities=16% Similarity=0.343 Sum_probs=42.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~ 114 (118)
.+..|+||++.|.+ ++.++|||.||..||.+|+.. +.+||+||.++...
T Consensus 7 ~~~~C~IC~~~~~~------------------Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD------------------PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS------------------EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC------------------CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45679999999976 566799999999999999987 78999999987644
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=4e-14 Score=88.13 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=41.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-------CCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~Cr~~~~~~~ 115 (118)
++..|+||++.|.+ ++.++|||.||..||.+|+.. ...||+||..+....
T Consensus 11 ~~~~C~IC~~~~~~------------------p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTE------------------PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSS------------------CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCC------------------eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 45679999999976 445789999999999999987 668999999886544
No 32
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.6e-14 Score=86.29 Aligned_cols=48 Identities=23% Similarity=0.562 Sum_probs=40.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
.+..|+||++.+. . +.++|||.||..||.+|+..+.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~---------------~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRA---------------D----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCC---------------S----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCcc---------------C----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4567999999973 1 4588999999999999999999999999887643
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=88.39 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=41.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
...|+||++.|.+ .+..++|||.||..||.+|+..+..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI-----------------AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC-----------------cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 4679999999976 133348999999999999999999999999987653
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.38 E-value=1.5e-13 Score=92.42 Aligned_cols=59 Identities=20% Similarity=0.464 Sum_probs=47.2
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
.....|+||++.|.++.. ....++.++|||.||..||.+|+..+.+||+||..+....+
T Consensus 70 ~~~~~C~iC~~~~~~~~~-----------~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQ-----------NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHH-----------TTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccc-----------cCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 456789999999986311 11135678999999999999999999999999999876654
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.7e-13 Score=80.73 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=36.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh---CCCCCcCC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLD 107 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~C 107 (118)
++..|+||++.|.+ ++.++|||.||..||.+|+. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK------------------PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS------------------CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC------------------eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45679999999976 45579999999999999998 46689998
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=5.2e-13 Score=80.62 Aligned_cols=55 Identities=15% Similarity=0.372 Sum_probs=42.4
Q ss_pred Cccccccccc-chhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcccccc
Q 033510 48 VVDNCAICRN-HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 48 ~~~~C~IC~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~~~ 116 (118)
++..|+||++ .|.+ ....++.++|||.||..||.+|+.. ...||+||+.+....+
T Consensus 2 ~~~~C~IC~~~~~~~--------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRN--------------PSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHC--------------SSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCC--------------CccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3467999999 7765 1112356899999999999999765 5689999998876554
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=4.9e-13 Score=88.27 Aligned_cols=49 Identities=27% Similarity=0.540 Sum_probs=41.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
.+..|+||++.|.+ .+.+++|||.||..||..|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-----------------ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-----------------EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-----------------cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45679999999976 13334999999999999999999999999998754
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.34 E-value=6.1e-13 Score=89.81 Aligned_cols=47 Identities=19% Similarity=0.453 Sum_probs=40.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC-CCcCCccCccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNSEWEF 113 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~~ 113 (118)
+..|+||++.|.+ ++.++|||.||..||..|+.... .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR------------------PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS------------------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC------------------cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999999976 56679999999999999998644 89999998764
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.1e-13 Score=78.47 Aligned_cols=42 Identities=29% Similarity=0.702 Sum_probs=35.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh---CCCCCcCC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLD 107 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~C 107 (118)
+...|+||++.|.+ ++.++|||.||..||.+|+. .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE------------------PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS------------------CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc------------------cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44679999999976 34578999999999999954 46789998
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=6.2e-13 Score=87.69 Aligned_cols=49 Identities=24% Similarity=0.578 Sum_probs=40.9
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC---CCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~---~CP~Cr~~~~~~~ 115 (118)
...|+||++.|.+ ++.++|||.||..||.+|+..+. .||+||..+....
T Consensus 21 ~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKE------------------PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSS------------------CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcC------------------eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 3579999999976 44578999999999999998754 8999999876544
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=84.10 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=39.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecC-CCCcccHhHHHHHHhC--CCCCcCCccCc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKT--RQVCPLDNSEW 111 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~ 111 (118)
++..|+||++.|.+ ++.++ |||.||..||..|+.. ...||+||..+
T Consensus 12 ~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD------------------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS------------------CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC------------------ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34679999999976 55678 9999999999999975 35899999986
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.29 E-value=1.6e-12 Score=86.64 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=42.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~~ 115 (118)
+..|+||++.|.+ ++.++|||.||..||.+|+.. ..+||+||..+....
T Consensus 23 ~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD------------------PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS------------------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC------------------cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4679999999976 555899999999999999987 779999999877554
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=2.5e-12 Score=90.66 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=39.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 112 (118)
...|+||++.|.+ .+..++|||.||..||.+|+.. +..||+||..+.
T Consensus 54 ~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN-----------------TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS-----------------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC-----------------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3479999999976 1444599999999999999997 788999999874
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.26 E-value=1.8e-12 Score=86.93 Aligned_cols=50 Identities=24% Similarity=0.480 Sum_probs=42.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC-CCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~~~~ 115 (118)
++..|+||++.|.+ ++.++|||.||..||.+|+.... +||+||.++....
T Consensus 17 ~~~~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALRE------------------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSS------------------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCcCChhhcC------------------eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 44679999999976 45579999999999999998755 9999999876543
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=89.31 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=40.8
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC-CCcCCccCcccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNSEWEFQ 114 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~~~ 114 (118)
..|+||++.|.+ ++.++|||.||..||..|+.... .||+||.++...
T Consensus 79 ~~C~IC~~~~~~------------------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQ------------------PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSS------------------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcC------------------CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999999976 55689999999999999999754 899999987654
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.25 E-value=1.5e-11 Score=80.67 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=43.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCC-CcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
..-.|+||++.|.+ ++.++|| |.|.+.||.+|+..+.+||+||.++....
T Consensus 21 ~~~~CpI~~~~m~d------------------PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD------------------PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccC------------------CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 34679999999988 7778999 99999999999999899999999876543
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.22 E-value=1.9e-12 Score=89.90 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=39.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC-CCcCCccCc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNSEW 111 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~ 111 (118)
..-.|+||++.|.+ ++.++|||.||..||.+|+.... .||+||.+.
T Consensus 30 ~~~~C~IC~~~~~~------------------pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR------------------PFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS------------------EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC------------------cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 44679999999976 55689999999999999998654 899999865
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.21 E-value=1.6e-12 Score=86.56 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=39.9
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 112 (118)
+..|+||++.|.+ ++.++|||.||..||.+|+.. ...||+||..+.
T Consensus 15 ~~~C~iC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE------------------PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS------------------CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc------------------eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4579999999976 555799999999999999987 678999999875
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.21 E-value=9.3e-12 Score=79.45 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=43.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
..-.|+||++.|.+ ++.++|||.|.+.||.+|+..+.+||+||.++....
T Consensus 13 ~~~~CpI~~~~m~d------------------PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD------------------PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSS------------------EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcC------------------CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 34679999999987 677889999999999999998899999999876543
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=1.8e-11 Score=80.54 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=43.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
..-.|+||++.|.+ ++.++|||.|++.||.+|+..+.+||+||.++...
T Consensus 28 ~~~~CpI~~~~m~d------------------PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTD------------------PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSS------------------EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccC------------------CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 35679999999988 67788999999999999999889999999987654
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=2.2e-11 Score=76.80 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=39.6
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~~ 115 (118)
++..|+||++.+.. .+. .+..++|||.||..||.+++.. ...||+||+.+....
T Consensus 10 ~~~~CpICle~~~~-------------~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEI-------------DDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCT-------------TTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCcc-------------ccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45679999998853 111 1222459999999999999854 678999999876443
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.15 E-value=1.6e-11 Score=74.44 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=39.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeee--cCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAW--GVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
++..|.||++.+.+ .+. ++|||. |+..|+.+|+..+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~------------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN------------------GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC------------------EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC------------------EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45679999999765 333 499999 899999999999999999999864
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.15 E-value=1.9e-11 Score=97.35 Aligned_cols=49 Identities=27% Similarity=0.571 Sum_probs=42.4
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~~~~ 115 (118)
...|+||++.+.+ ++.++|||.||..||..|+. ...+||+||.++....
T Consensus 332 ~~~C~ICle~~~~------------------pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD------------------VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC------------------EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC------------------eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3689999999865 67799999999999999999 6889999999876543
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=7.4e-12 Score=83.81 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=40.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeec-CCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
....|+||++.|.+ ++.+ +|||.||..||..|+. ..||+||..+....
T Consensus 21 ~~~~C~IC~~~~~~------------------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILRE------------------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSS------------------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhC------------------ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 34679999999976 4445 9999999999999998 78999999876543
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=1.3e-11 Score=72.87 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=38.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 115 (118)
+...|+||++.|.+ ++.++|||.||..||..| ...||+||+.+....
T Consensus 5 ~~~~C~IC~~~~~~------------------p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 5 QFLRCQQCQAEAKC------------------PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCSSCSSSCSSCBC------------------CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cCCCceEeCCccCC------------------eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 45679999999976 456889999999999884 678999999876543
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=2.4e-11 Score=75.43 Aligned_cols=43 Identities=19% Similarity=0.431 Sum_probs=37.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
++..|.||++.+.+ ++.++|||. |+..|+..| ..||+||..+.
T Consensus 23 ~~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA------------------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC------------------EEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC------------------EEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 34679999999866 667899999 999999998 78999999865
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.05 E-value=6.5e-11 Score=71.51 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=40.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
....|.||++.+.+ ..++.++|||. |+..|+.+|...+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~----------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD----------------GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC----------------EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC----------------eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45679999998754 12334599998 999999999998899999999864
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.02 E-value=1.2e-10 Score=70.04 Aligned_cols=50 Identities=24% Similarity=0.572 Sum_probs=37.9
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCC--C---cccHhHHHHHHhC--CCCCcCCccCcccc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN--H---AFHFHCISRWLKT--RQVCPLDNSEWEFQ 114 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--H---~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~ 114 (118)
.+.+.|.||+++..+ . + .++|. | .||..||.+|+.. +.+||+|+.+|.++
T Consensus 4 ~~~~~CrIC~~~~~~---------------~--l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 4 EDVPVCWICNEELGN---------------E--R-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60 (60)
T ss_dssp CSCCEETTTTEECSC---------------C--C-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCCC
T ss_pred CCCCEeEEeecCCCC---------------c--e-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeecC
Confidence 356789999987321 1 2 36655 4 9999999999975 67899999998753
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=81.75 Aligned_cols=49 Identities=24% Similarity=0.494 Sum_probs=41.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC-CCCcCCccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~~~ 114 (118)
+.-.|+||++.|.+ ++.++|||.|+..||.+|+... .+||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~------------------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE------------------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS------------------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC------------------cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44679999999976 4558999999999999999874 4999999987654
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=73.94 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=38.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeec-CCCCcccHhHHHHHHhCC------CCCcC--CccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTR------QVCPL--DNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~------~~CP~--Cr~~ 110 (118)
..-.|+||++.|.+ ++.+ .|||.|++.||.+|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d------------------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK------------------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS------------------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC------------------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45679999999987 6667 499999999999999864 48999 9865
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=3.2e-10 Score=84.36 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=42.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~~~ 115 (118)
..-.|+||++.|.+ ++.++|||.|++.||.+|+.. ..+||+||.++....
T Consensus 207 ~~~~c~i~~~~~~d------------------Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMRE------------------PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSS------------------EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcC------------------CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 34679999999987 677889999999999999986 445999999876543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.1e-10 Score=72.40 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=35.7
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWEF 113 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 113 (118)
+..|.||++.+.+ ++.++|||. |+..|+.+ ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~------------------~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA------------------IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC------------------BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC------------------EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4579999999865 666899999 99999965 4789999997653
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.88 E-value=3e-10 Score=89.39 Aligned_cols=55 Identities=24% Similarity=0.495 Sum_probs=39.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC-----------CCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~~ 112 (118)
....|+||++.+.+ ....+...| ....|||.||..||.+||++. ++||+||+++.
T Consensus 307 ~~~ECaICys~~l~--------~g~lPdk~C--~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLD--------GGEVPLVSC--DNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCT--------TCCCCCBCC--SCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecC--------CCCCccccc--cCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34679999999864 011122221 126899999999999999852 46999998754
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=2.5e-09 Score=77.14 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=42.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC-CCCcCCccCccccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNSEWEFQK 115 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~~~~ 115 (118)
..-.|+||++.|.+ ++.++|||.|.+.||..|+..+ .+||+|+.++....
T Consensus 105 ~~f~CPI~~elm~D------------------PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMRE------------------PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCSS------------------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCCC------------------CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 34579999999987 6778999999999999999874 46999999876543
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.8e-09 Score=65.28 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=36.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
+...|.||++.+.+ +++++|||. |+..|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN------------------WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CSSCCSSSSSSCCC------------------CEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCcCcCCCC------------------EEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 45679999998765 778999999 99999984 578999999765
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.77 E-value=1.4e-09 Score=68.39 Aligned_cols=42 Identities=24% Similarity=0.542 Sum_probs=36.0
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
+..|.||++.+.+ ++.++|||. |+..|+..| ..||+||..+.
T Consensus 18 ~~~C~IC~~~~~~------------------~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEIN------------------STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCC------------------EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCc------------------EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4579999999865 777899999 999999877 38999999765
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.70 E-value=5.7e-09 Score=62.76 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=42.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeec-CCCCcccHhHHHHHHhCCCCCcCCccCcccccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKY 116 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~ 116 (118)
-.|+|+++.|.+ ++.. ++||.|-+.||.+||..+.+||+.+.++....+
T Consensus 4 ~~CpIs~~~m~d------------------PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR------------------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS------------------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC------------------CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 359999999987 4556 899999999999999988899999998776543
No 68
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=76.48 Aligned_cols=50 Identities=24% Similarity=0.790 Sum_probs=41.3
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCC--CCcCCccCccccc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPLDNSEWEFQK 115 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~Cr~~~~~~~ 115 (118)
...|.||.+.+.. +..| ..|+|.||.+|+.+|++++. .||.|+.+|..+.
T Consensus 180 i~~C~iC~~iv~~-------------g~~C----~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQ-------------GQSC----ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSS-------------CEEC----SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhC-------------Cccc----CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4679999999864 4444 34999999999999998754 8999999998764
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=1.8e-08 Score=64.73 Aligned_cols=47 Identities=17% Similarity=0.419 Sum_probs=36.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--------CCCCcC--CccC
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNSE 110 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~ 110 (118)
..+|.||++.+.. ...+.+.+|||.|+..||..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~---------------~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV---------------EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG---------------GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc---------------ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999999865 112334579999999999999974 236999 9987
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.7e-08 Score=76.72 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=40.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC--CCCcC--CccCcccc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPL--DNSEWEFQ 114 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~--Cr~~~~~~ 114 (118)
..-.|+||++.|.+| +....|||+|++.||.+|+..+ ..||+ |++.+...
T Consensus 180 ~el~CPIcl~~f~DP-----------------Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAP-----------------LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSE-----------------EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCC-----------------eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 345799999999872 3335899999999999999864 47999 99876544
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.59 E-value=8.7e-09 Score=80.85 Aligned_cols=43 Identities=19% Similarity=0.488 Sum_probs=37.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCc-ccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
++..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~------------------~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS------------------VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC------------------EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc------------------eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999999876 677899999 999999988 78999999865
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.16 E-value=1.6e-06 Score=56.87 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=36.8
Q ss_pred cccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-CCCCcCCccCccc
Q 033510 51 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNSEWEF 113 (118)
Q Consensus 51 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 113 (118)
.|.+|--+|.. -....+|+|+|+..|+..|.+. .++||+|+.++..
T Consensus 3 fC~~C~~Pi~i-----------------ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV-----------------YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE-----------------EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE-----------------EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777777754 2456899999999999999865 7899999987653
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.41 E-value=0.007 Score=36.45 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=33.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCC----CCCcCCccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~ 110 (118)
....|.||.+.= + .+.--.|...||..|+.+.|... =.||.|..+
T Consensus 11 ~~~~C~vC~~~~-----------------~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGT-----------------D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCT-----------------T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCC-----------------e-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 456799997541 1 25556799999999999888763 379999765
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.64 E-value=0.012 Score=37.29 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=25.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH-HH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR-WL 98 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~-Wl 98 (118)
++-.|.||.+.+.. ..+..-+.|+|.|+..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~---------------~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ---------------DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCC---------------BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCC---------------CceEECCcCChHHhHHHCHHHhc
Confidence 34579999987422 11122388999999999998 54
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.49 E-value=0.028 Score=36.32 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=35.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCC-CCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC-NHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
.-..|-.|+..... + ..| .|.++..||..-|.....||+|..+.
T Consensus 27 G~~nCKsCWf~~k~------------------L--V~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 27 GPQFCKSCWFENKG------------------L--VECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCCSSCSCCSS------------------E--EECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred CcccChhhccccCC------------------e--eeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 45679999988743 3 334 59999999999999999999998754
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.00 E-value=0.16 Score=32.40 Aligned_cols=24 Identities=42% Similarity=0.951 Sum_probs=17.7
Q ss_pred CC-CcccHhHHHHHHhC----CCCCcCCccC
Q 033510 85 CN-HAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 85 C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
|. ..||..|+. |.. .-.||.|+..
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 55 689999997 433 3469999765
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.31 E-value=0.057 Score=31.67 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=32.2
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
..++.|.||...- ..+.--.|...||..|+..-+.. .=.||.|+.+
T Consensus 9 ~~~~~C~vC~~~g------------------~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG------------------EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS------------------SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC------------------cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3567899998641 12444568889999999986543 3469999753
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.89 E-value=0.035 Score=32.59 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=31.4
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
..++.|.||.+.- + .+.--.|...||..|+.+-|.. .=.||.|+..
T Consensus 7 ~~~~~C~vC~~~g-----------------~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG-----------------E-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS-----------------S-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC-----------------C-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4567799998631 1 2333568889999999865544 2359999764
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.01 E-value=0.076 Score=32.11 Aligned_cols=49 Identities=14% Similarity=0.352 Sum_probs=32.4
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 112 (118)
...|.||...... ...+.--.|.-.||..|+..-+.. .-.||.|+....
T Consensus 18 ~~~C~~C~~~~~~---------------~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDG---------------SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSS---------------CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCC---------------CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3569999877421 122334568899999999765442 346999976543
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.57 E-value=0.021 Score=33.37 Aligned_cols=47 Identities=28% Similarity=0.594 Sum_probs=32.3
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
+..++.|.||...- ..+.--.|...||..|+.+-+.. .-.||.|...
T Consensus 2 d~~~~~C~vC~~~g------------------~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKSG------------------QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCCS------------------SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCCC------------------cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 34677899998741 12444578899999999865543 2359988654
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.54 E-value=0.074 Score=37.43 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=32.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
.++.|.||... ++ .+.--.|...||..|+.+-+.. .=.||.|+..
T Consensus 3 ~~~~C~~C~~~----------------g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG----------------GE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC----------------SS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC----------------Ce--eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 56789999854 11 2444568899999999876664 2369999864
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=89.06 E-value=0.17 Score=29.68 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=34.6
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-------CCCCCcCCccC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-------TRQVCPLDNSE 110 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-------~~~~CP~Cr~~ 110 (118)
.++..|.||...... .....+.--.|.-.||..|+.+-+. ..=.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~-------------~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSE-------------APNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCB-------------TTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCC-------------CCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999987532 2233455577999999999986432 23469888654
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.04 E-value=0.12 Score=33.49 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.6
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 99 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 99 (118)
..+++.|.||.+.=+. ...+.-..|+..||..||...+.
T Consensus 4 ~~~~~~C~~C~~~g~~---------------~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL---------------LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCT---------------TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCC---------------cCCeECCCCCCCcChHHhCCccc
Confidence 4567889999876211 11234477999999999988765
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.95 E-value=0.077 Score=38.11 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=33.0
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
..++.|.+|... +. .+.--.|...||..|+.+-+.. .=.||.|+..
T Consensus 5 ~~~~~C~~C~~~-----------------g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG-----------------GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC-----------------EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC-----------------Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 456789999754 11 3444668899999999877664 2369999864
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.64 E-value=0.029 Score=32.33 Aligned_cols=45 Identities=27% Similarity=0.577 Sum_probs=30.7
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
..++.|.||...-. .+.--.|...||..|+.+-|.. .-.||.|..
T Consensus 7 ~~~~~C~vC~~~g~------------------ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQ------------------LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSC------------------CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCe------------------EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45678999987511 2444578899999999875544 224888754
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.40 E-value=0.25 Score=27.47 Aligned_cols=30 Identities=30% Similarity=0.619 Sum_probs=21.5
Q ss_pred eeecCCCCcccHhHHHHHHhC----CCCCcCCcc
Q 033510 80 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
+.--.|...||..|+.+=+.. .=.||.|+.
T Consensus 16 l~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 16 ILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp EECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred EECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 444678899999999764443 235999964
No 87
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.20 E-value=0.57 Score=41.14 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=40.3
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCC-CcccHhHHHHHHhCCCCCcCCccCcccc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
-.|+|=++.+.+ ++.++-| +.|-+..|.+||..+.+||+=|.+....
T Consensus 892 F~cPIs~~lM~D------------------PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 892 FLDPLMYTIMKD------------------PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred hCCcchhhHHhC------------------CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 459999999988 6778887 6899999999999999999988876543
No 88
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.51 E-value=0.21 Score=30.70 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=32.4
Q ss_pred cCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-----CCCCcCCcc
Q 033510 45 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-----RQVCPLDNS 109 (118)
Q Consensus 45 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~ 109 (118)
|.-.+..|.||...-. ....+.--.|...||..|+.+=|.. .=.||.|..
T Consensus 22 w~C~~c~C~vC~~~~~---------------~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 22 KKCHSCSCRVCGGKHE---------------PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCCSSSSCSSSCCCCC---------------STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred eECCCCCCcCcCCcCC---------------CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3445557888886421 1223444679999999999865543 226999865
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.17 E-value=0.082 Score=31.39 Aligned_cols=45 Identities=31% Similarity=0.552 Sum_probs=31.4
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
..++.|.||...- . .+.--.|...||..|+.+-|.. .=.||.|..
T Consensus 6 ~~~~~C~vC~~~g-----------------~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGG-----------------E-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCS-----------------S-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCC-----------------C-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4667899998641 1 2444568899999999865544 235999965
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.95 E-value=0.26 Score=31.21 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=33.1
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
+..++.|.||...= + .+.--.|.-.||..|+.+=|.. .=.||.|+..
T Consensus 22 d~n~~~C~vC~~~g----------------~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPG----------------D--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSS----------------C--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCC----------------C--EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34667899998651 1 2444568889999999876654 2369999754
No 91
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.78 E-value=0.68 Score=29.26 Aligned_cols=35 Identities=23% Similarity=0.583 Sum_probs=22.8
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
..++.|.||-.-=.+ .. .---.|+-+||..||++-
T Consensus 13 ~~D~~C~VC~~~t~~---------------~l-~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAE---------------SL-FPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSS---------------CC-SSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccccc---------------ce-eccccccccccHhhcccc
Confidence 357889998743111 11 111338999999999995
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.49 E-value=0.92 Score=27.55 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=30.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-----CCCCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----TRQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~~ 111 (118)
..| ||...+.. ....+.--.|...||..|+.--.. ..-.||.|+..-
T Consensus 13 ~~C-~C~~~~d~--------------~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNV--------------NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCS--------------SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCC--------------CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 446 89888632 122344456889999999852211 245799998653
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.41 E-value=2.2 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=25.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 95 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~ 95 (118)
....|.+|+..-.. +.....+..+.-..|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~---------~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQ---------NREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTC---------CTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhh---------CcCCCchhceEhhhcCCCCCCchhc
Confidence 45679999876321 0011223345557899999999995
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=84.08 E-value=0.22 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=22.1
Q ss_pred eeecCCCCcccHhHHHHHHhC-----CCCCcCCccC
Q 033510 80 VAWGVCNHAFHFHCISRWLKT-----RQVCPLDNSE 110 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~ 110 (118)
+.--.|...||..||.+=|.. .=.||.|+.+
T Consensus 34 l~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 34 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp EECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred EEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 444568899999999865543 2269999754
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.98 E-value=0.77 Score=27.17 Aligned_cols=34 Identities=29% Similarity=0.664 Sum_probs=22.5
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeec-CCCCcccHhHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCIS 95 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~ 95 (118)
....|.+|...+.. ... .+.-- .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~-------------~~~-mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVND-------------DQD-AILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCT-------------TSC-EEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCC-------------CCC-eEecccCccccCchhccC
Confidence 45679999999854 222 22223 788999999974
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=83.84 E-value=1.2 Score=30.52 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-----------CCCCCcCCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----------TRQVCPLDNS 109 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~Cr~ 109 (118)
..++.|.||.+.= + .+.--.|-..||..||.+=+. ..=.||+|+.
T Consensus 61 g~~d~C~vC~~GG-----------------~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGG-----------------N-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCS-----------------S-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCC-----------------c-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3556788887652 1 244457889999999997653 1336999974
No 97
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=83.68 E-value=0.64 Score=28.50 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=26.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
....|+.|.+.+.. + .+..-+..||.+|+ .|-.|++.+.
T Consensus 24 ~~~~C~~C~~~I~~---------------~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRG---------------P---FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCS---------------C---EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEecc---------------e---EEEECCccccccCC--------ccCCCCCCCC
Confidence 44679999988743 1 12345788898886 5777776554
No 98
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.20 E-value=0.53 Score=27.33 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=32.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-----CCCCCcCCccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----TRQVCPLDNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~ 110 (118)
+...|+||...+.+ ....+.--.|...||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~--------------~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAA--------------DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCS--------------SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCC--------------CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999988743 122233457889999999864322 24569999764
No 99
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.17 E-value=0.49 Score=33.64 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=32.3
Q ss_pred ccccccccchhhhhHHHhhhcccCCCC--cceeeecCCCCcccHhHHHHH------Hh-----CCCCCcCCccC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSE--ECTVAWGVCNHAFHFHCISRW------LK-----TRQVCPLDNSE 110 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~C~H~FH~~Ci~~W------l~-----~~~~CP~Cr~~ 110 (118)
..|+||...|.+ ++ ...+.--.|...||..|+.-= +. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~-------------~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDD-------------DDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTT-------------CCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCC-------------cccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 469999999875 22 113444679999999998421 11 14579999864
No 100
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=82.92 E-value=0.25 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=22.5
Q ss_pred eeeecCCCCcccHhHHHHHHhC----C-CCCcCCccC
Q 033510 79 TVAWGVCNHAFHFHCISRWLKT----R-QVCPLDNSE 110 (118)
Q Consensus 79 ~~~~~~C~H~FH~~Ci~~Wl~~----~-~~CP~Cr~~ 110 (118)
.+.--.|...||..|+.+-|.. . =.||.|+.+
T Consensus 41 ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 41 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp EEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred eeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 3444678899999999876654 2 369999763
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=82.35 E-value=1.2 Score=26.73 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=32.6
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCcc
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNS 109 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~ 109 (118)
...++.|.||...-.. .....+.--.|.-.||..|+..-+.- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~-------------~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQ-------------NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCC-------------SSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCC-------------CCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3567889999876321 12233444678899999999753221 235888854
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.03 E-value=2.9 Score=26.58 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=37.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh-CCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 112 (118)
....|.||-+++.. .. ..+.-+.--.|+--.++.|.+-=.+ .++.||.|+..++
T Consensus 15 ~~qiCqiCGD~VG~----------~~-~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGL----------TV-EGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCB----------CS-SSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCcccc----------CC-CCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 34679999999765 11 1222234456777889999875444 4889999998875
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.90 E-value=0.35 Score=31.42 Aligned_cols=30 Identities=20% Similarity=0.518 Sum_probs=22.4
Q ss_pred eeecCCCCcccHhHHHHHHhC----CCCCcCCcc
Q 033510 80 VAWGVCNHAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
+.--.|...||..|+.+-|.. .=.||.|+.
T Consensus 78 l~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 78 LFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp EECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred EEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 444669999999999876554 236999974
No 104
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=80.21 E-value=0.34 Score=34.36 Aligned_cols=44 Identities=23% Similarity=0.491 Sum_probs=30.2
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCccC
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
++.|.+|...= + .+.--.|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g----------------~--ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG----------------D--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS----------------S--CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCC----------------c--eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 46788888541 1 2334568889999999765543 2369999864
No 105
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.98 E-value=1.6 Score=25.95 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=5.9
Q ss_pred cccccccchh
Q 033510 51 NCAICRNHIM 60 (118)
Q Consensus 51 ~C~IC~~~~~ 60 (118)
.|+.|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (79)
T 1x62_A 17 MCDKCGTGIV 26 (79)
T ss_dssp CCSSSCCCCC
T ss_pred ccccCCCCcc
Confidence 4666666653
No 106
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.37 E-value=0.2 Score=31.68 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC----CCCCcCCcc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
.++..|.||...-.. ...+.--.|...||..|+.+=|.. .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~---------------~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDED---------------DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGG---------------GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCC---------------CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 355679999987421 223444568999999999854443 235999964
No 107
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=77.99 E-value=4.7 Score=24.34 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=22.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. ..+..-+..||.+|+ .|-.|++.+.
T Consensus 26 ~~C~~C~~~I~~------------------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 26 PLCDKCGSGIVG------------------AVVKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp CBCTTTCCBCCS------------------CCEESSSCEECTTTC--------CCSSSCCCTT
T ss_pred CCcccCCCEecc------------------cEEEECCceECccCC--------EecCCCCCCC
Confidence 458888777643 112335677787775 4666665543
No 108
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.92 E-value=0.86 Score=28.97 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=21.8
Q ss_pred eeeecCCCCcccHhHHHHHHhC---CCCCcCCcc
Q 033510 79 TVAWGVCNHAFHFHCISRWLKT---RQVCPLDNS 109 (118)
Q Consensus 79 ~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~ 109 (118)
.+.--.|.-.||..|+..=+.. .-.||.|+.
T Consensus 42 mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 42 MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3445678999999999653322 347999974
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=76.62 E-value=0.58 Score=34.48 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=19.7
Q ss_pred eeecCCCCcccHhHHHHHHhC--C---CCCcCCccC
Q 033510 80 VAWGVCNHAFHFHCISRWLKT--R---QVCPLDNSE 110 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~--~---~~CP~Cr~~ 110 (118)
+.--.|...||..|+.+=|.. . =.||.|+.+
T Consensus 190 L~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp EECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred EEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 444579999999999965543 2 259999753
No 110
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=76.43 E-value=2 Score=26.79 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=32.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--CCCCcCCccC
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNSE 110 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~ 110 (118)
+++.|.||...-.. .....+.--.|.-.||..|+..-+.- .=.||.|...
T Consensus 24 ~~~~C~vC~~~~s~-------------~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQ-------------NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSC-------------SEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCC-------------CCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 56789999976311 12223444578889999999753321 3359988654
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=75.07 E-value=1.1 Score=28.95 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=31.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeec-CCCCcccHhHHHHHHh----------CCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLK----------TRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~----------~~~~CP~Cr~~~~ 112 (118)
..|.||...+.+ .+. .+.-- .|.-.||..|+.-=.. ..-.||.|+....
T Consensus 4 ~~C~iC~~p~~~-------------~~~-mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVND-------------DQD-AILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCT-------------TSC-EEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCC-------------CCC-EEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 469999999854 222 12222 6889999999842110 2346999976543
No 112
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.64 E-value=0.92 Score=25.40 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=17.1
Q ss_pred CCCCcccHhHHHHHH----hCCCCCcCCc
Q 033510 84 VCNHAFHFHCISRWL----KTRQVCPLDN 108 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl----~~~~~CP~Cr 108 (118)
.|.-.||..|+.--. ...-.||.|+
T Consensus 24 ~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 24 GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCccCcccccCCCccccCCCCEECCCCC
Confidence 588899999975321 2456788885
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.07 E-value=1.1 Score=27.87 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=33.1
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC--------CCCCcCCccC
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNSE 110 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~Cr~~ 110 (118)
+..|.||...-.. .....+.--.|...||..|+.+-|.. .=.||.|+..
T Consensus 16 ~~~C~vC~~~~~~-------------~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVA-------------SGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCC-------------TTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCC-------------CCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 4679999976321 12334555679999999999876541 3469999654
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.03 E-value=1.9 Score=26.45 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=29.3
Q ss_pred eeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 41 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 41 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
..|.-+.+...|.+|...|.. .. ..-.--.||++|+..|....
T Consensus 13 ~~W~pd~~~~~C~~C~~~Fs~-------------~~-RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 13 GYWQEDEDAPACNGCGCVFTT-------------TV-RRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp SCCCCTTTCCBCTTTCCBCCT-------------TS-CCEECTTTCCEECTGGGCCE
T ss_pred CccccCCCCCCCcCcCCcccc-------------ch-hcccccCCCcEEChHHhCCe
Confidence 345555667789999999964 11 11233569999999997654
No 115
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.05 E-value=2.7 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=24.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
+.|.||+..-.. + ......+..+.-..|+..||..||...
T Consensus 2 ~~C~~C~~~~~~-------n-~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNM-------N-KKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTB-------C-TTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccc-------c-ccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 569999876421 0 000011223444679999999999755
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=72.99 E-value=3.9 Score=27.44 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=20.7
Q ss_pred eecCCCCcccHhHHHHHH------h-----CCCCCcCCcc
Q 033510 81 AWGVCNHAFHFHCISRWL------K-----TRQVCPLDNS 109 (118)
Q Consensus 81 ~~~~C~H~FH~~Ci~~Wl------~-----~~~~CP~Cr~ 109 (118)
.--.|-..||..||.+=+ + ..=.|++|+-
T Consensus 71 cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 71 CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 335688999999999752 1 1246999964
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=71.93 E-value=1.8 Score=28.16 Aligned_cols=41 Identities=27% Similarity=0.659 Sum_probs=26.7
Q ss_pred CCcccccccccchhhhhHHHhhhcccCCCCcceeeec---CCCCcccHhHHHHHHhC----CCCCcCCc
Q 033510 47 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG---VCNHAFHFHCISRWLKT----RQVCPLDN 108 (118)
Q Consensus 47 ~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~C~H~FH~~Ci~~Wl~~----~~~CP~Cr 108 (118)
..++.|.+|.+. ++ ++.- .|-..||..|+. |.. .=.||.|.
T Consensus 13 ~~~~~C~~C~~~-----------------G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCGDG-----------------GE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTCCC-----------------SE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCcCCCC-----------------Cc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 466789999832 11 3333 488999999997 554 22477554
No 118
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=71.35 E-value=0.8 Score=29.93 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=17.4
Q ss_pred cCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 83 GVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..||+.| ..=+.....||.|+.+|-
T Consensus 71 ~~CG~~F-----~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 71 RKCGFVF-----KAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTTCCBC-----CCCSSCCSSCSSSCCCCB
T ss_pred hhCcCee-----cccCCCCCCCcCCCCCcc
Confidence 6799999 111123568999999874
No 119
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.59 E-value=3.7 Score=32.30 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=23.2
Q ss_pred eeecCCCCc--ccHhHHHHHHhC--CCCCcCCccCcccccc
Q 033510 80 VAWGVCNHA--FHFHCISRWLKT--RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 80 ~~~~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~~ 116 (118)
..-..|.|. |-..=+-..... .-.||+|.+...++.+
T Consensus 263 vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 263 SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 455789998 654433333222 3469999988766543
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.30 E-value=2.7 Score=25.63 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=27.1
Q ss_pred eeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 42 LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
.|..+.+...|.+|...|.. . ...-.--.||.+|+..|....
T Consensus 12 ~W~~d~~~~~C~~C~~~Fs~-------------~-~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 12 AWLKDDEATHCRQCEKEFSI-------------S-RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp ---CCCCCCBCTTTCCBCBT-------------T-BCCEECTTTCCEECSGGGCEE
T ss_pred ccccCccCCcccCcCCcccC-------------c-cccccCCCCCCEEChHHhCCe
Confidence 45555566789999999964 1 111233569999999997653
No 121
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.37 E-value=3.8 Score=25.65 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=26.2
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 100 (118)
-.|.+|.+.+++ ..-+..-..=+|.|+.-|-+..++.
T Consensus 16 l~CtlC~erLEd--------------tHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 16 LCCTICHERLED--------------THFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCCSSSCSCCSS--------------TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eEeecchhhhcc--------------CceeeCCCccCCeeeccccHHHHHh
Confidence 459999999986 2211111234699999999999875
No 122
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=68.95 E-value=4.2 Score=31.84 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=23.7
Q ss_pred eeecCCCCc--ccHhHHHHHHhC--CCCCcCCccCcccccc
Q 033510 80 VAWGVCNHA--FHFHCISRWLKT--RQVCPLDNSEWEFQKY 116 (118)
Q Consensus 80 ~~~~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~~~ 116 (118)
..-..|.|. |-..=+-..... .-.||+|.+...++.+
T Consensus 229 ~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 229 CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 455789998 664444433333 3469999998776543
No 123
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.10 E-value=2.2 Score=24.61 Aligned_cols=40 Identities=18% Similarity=0.457 Sum_probs=26.6
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+.|.+.+.. .+ .++..-+..||..|+ .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~-------------~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMP-------------GS---RKLEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCS-------------SS---CEECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCCccCCCcccc-------------Cc---cEEEECccccCcccC--------eECCCCCcCC
Confidence 3579999998853 11 223446789999886 5777776554
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.30 E-value=3.3 Score=25.32 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=28.0
Q ss_pred eeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 41 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 41 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
..|.-+.+...|.+|...|.. . ...-.--.||.+|+..|...
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~-------------~-~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSV-------------L-KKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCS-------------S-SCCEECSSSCCEECTTTSCE
T ss_pred CccccCCCCCcCcCcCCcccc-------------c-hhhhhhcCCCcEEChhhcCC
Confidence 345555666789999999954 1 11122356999999999654
No 125
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=66.01 E-value=2.1 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=25.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. ..+..-+..||..|+ .|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~------------------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEG------------------RVVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCS------------------CEECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCcccCCEecc------------------eEEEECccccccCcC--------EECCCCCCCC
Confidence 568888888743 123456789999886 5778877654
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.93 E-value=3.1 Score=25.91 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=27.8
Q ss_pred eecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH
Q 033510 43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 98 (118)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl 98 (118)
|..+.+...|.+|...|.. . ...-.--.||++|+..|...++
T Consensus 14 W~~d~~~~~C~~C~~~F~~-------------~-~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 14 WVPDSEAPNCMNCQVKFTF-------------T-KRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCCGGGCCBCTTTCCBCCS-------------S-SCCEECTTTCCEECGGGSCEEE
T ss_pred CcccccCCcCcCCCCcccc-------------h-hhCccccCCCCEECCcccCCee
Confidence 3333455679999999854 1 1113346799999999976543
No 127
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.85 E-value=3.5 Score=23.59 Aligned_cols=37 Identities=19% Similarity=0.457 Sum_probs=24.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. + . +..-+..||.+|+ .|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~---------------~--~-~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT---------------G--G-VTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS---------------S--E-EESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeecc---------------c--e-EEECccccCCCCC--------ccCCCCCcCC
Confidence 568888888743 1 1 2345778898886 4777766553
No 128
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.25 E-value=3.1 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=25.8
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+-|.+.+.+ ..+..-+..||.+|+ +|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~~------------------~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDE------------------QPLIFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCS------------------CCCCCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCccCCCEecc------------------eEEEECcceeCCCCC--------EeCCCCCccC
Confidence 3569999998753 112345778998885 5777776654
No 129
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.99 E-value=2.9 Score=24.47 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=26.9
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+.|.+.+.. .+ .+ ..-+..||..|+ .|-.|++.+.
T Consensus 9 ~~~C~~C~~~I~~--------------~~-~v--~a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYF--------------AE-KV--SSLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCT--------------TT-EE--EETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeEC--------------Ce-EE--EECCeEeeCCCC--------CCCCCCCccC
Confidence 4679999999863 12 12 345789999886 5778877654
No 130
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.68 E-value=2.2 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=25.0
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+.|.+.+.. . .+..-+..||..|+ .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~---------------~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIG---------------R---VIKAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCS---------------C---CEEETTEEECTTTS--------BCSSSCCBCS
T ss_pred CCcCccCCCEecc---------------e---EEEECcccccccCC--------EeCCCCCcCC
Confidence 3568899888743 1 12335778998886 5777776544
No 131
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.57 E-value=3.1 Score=24.31 Aligned_cols=37 Identities=16% Similarity=0.414 Sum_probs=24.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+-|...|.. ..+..-+..||.+|+ +|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~------------------~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG------------------RVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS------------------CCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC------------------eeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 468888888743 122445788998885 5777766553
No 132
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.10 E-value=7.9 Score=22.94 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=28.9
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH---------hCCCCCcCCccC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL---------KTRQVCPLDNSE 110 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl---------~~~~~CP~Cr~~ 110 (118)
..| ||...+.. ...+.--.|...||..|+.--. ...-.||.|+..
T Consensus 17 ~~C-~C~~~~~~---------------~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNN---------------RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCS---------------SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCC---------------CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 347 89887632 1223335689999999984211 236679999754
No 133
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=61.98 E-value=6.2 Score=25.66 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=26.8
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+-|.+.+.. . .++..-+..||..|+ .|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~---------------~--~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIAD---------------R--FLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCS---------------S--SEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCC---------------c--EEEEeCCcEEccccc--------CcCcCCCccc
Confidence 3579999998854 1 122346788999885 5888877653
No 134
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.72 E-value=5.2 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=25.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI 94 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci 94 (118)
.+..|++|...|.- -......-..|+|.++..|=
T Consensus 67 ~~~~C~~C~~~fg~-------------l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRL-------------LLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGG-------------CSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCcccc-------------ccCCCCcCCCCCchhhcccc
Confidence 46789999999864 22334556789999999996
No 135
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=61.62 E-value=2.3 Score=25.46 Aligned_cols=24 Identities=42% Similarity=0.951 Sum_probs=17.9
Q ss_pred CC-CcccHhHHHHHHhC----CCCCcCCccC
Q 033510 85 CN-HAFHFHCISRWLKT----RQVCPLDNSE 110 (118)
Q Consensus 85 C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 110 (118)
|. ..||..|+. |.. .-.||.|+..
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 65 689999997 443 3469999765
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.51 E-value=3.9 Score=26.98 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=27.1
Q ss_pred eecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 43 WAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 43 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
|..+.....|.+|...|.. . ...-.--.||++|+..|....
T Consensus 63 W~~d~~~~~C~~C~~~Fs~-------------~-~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSV-------------T-VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCS-------------S-SCCEECTTTCCEECGGGSCEE
T ss_pred cccCCCCCCCcCcCCcccc-------------c-cccccCCCCCeEEChHHhCCc
Confidence 4444455689999999964 1 111233579999999996543
No 137
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=61.18 E-value=3.4 Score=26.74 Aligned_cols=13 Identities=31% Similarity=0.968 Sum_probs=11.5
Q ss_pred cccHhHHHHHHhC
Q 033510 88 AFHFHCISRWLKT 100 (118)
Q Consensus 88 ~FH~~Ci~~Wl~~ 100 (118)
-||+.||.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999963
No 138
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=61.01 E-value=3.5 Score=26.68 Aligned_cols=12 Identities=33% Similarity=1.063 Sum_probs=11.1
Q ss_pred cccHhHHHHHHh
Q 033510 88 AFHFHCISRWLK 99 (118)
Q Consensus 88 ~FH~~Ci~~Wl~ 99 (118)
-||+.||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 139
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.71 E-value=3.3 Score=23.75 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=26.0
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. .+. ++..-+..||..|+ .|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~-------------~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMP-------------GTR---KMEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCS-------------SSC---EEEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCccCCCcccC-------------Cce---EEEECcCeecccCC--------cccccCCccC
Confidence 569999998863 111 22335778998886 5777776654
No 140
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.50 E-value=4.1 Score=24.02 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=26.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. .+. .+..-+..||..|+ .|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~-------------~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVA-------------GDQ---NVEYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCS-------------SSC---EEECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CcCccCCccccc-------------Cce---EEEECccccccccC--------chhhCCCccC
Confidence 579999988853 121 22345789999886 5778877654
No 141
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.00 E-value=0.86 Score=30.31 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCC
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 107 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 107 (118)
+.....|.+|...|.. -...-.--.||.+|+..|.........+|-.|
T Consensus 16 d~~~~~C~~C~~~Fs~--------------~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 16 TGLEPSCKSCGAHFAN--------------TARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ----CCCTTTCCCCSS--------------GGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccccCcccCcCCcccc--------------ccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 3455679999999854 11112336799999999976655445566666
No 142
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.12 E-value=1.2 Score=25.90 Aligned_cols=38 Identities=21% Similarity=0.596 Sum_probs=26.7
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecC---CCCcccHhHHHHHHhC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGV---CNHAFHFHCISRWLKT 100 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---C~H~FH~~Ci~~Wl~~ 100 (118)
..|+-|...++. .+.+.-+.-. |++.|+..|+.+|-..
T Consensus 7 k~CP~C~~~Iek-------------~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEK-------------DGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSS-------------CCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEe-------------CCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 568888888865 3444455544 8888888888888654
No 143
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.31 E-value=2.8 Score=24.00 Aligned_cols=38 Identities=18% Similarity=0.482 Sum_probs=25.0
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+-|.+.+.. +. + ..-+..||..|+ .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~---------------~~-~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS---------------GG-I--TYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT---------------TC-E--EETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc---------------ce-E--EECccccccCcC--------EECCCCCCCC
Confidence 3568899888743 11 2 235778998886 5777776653
No 144
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.03 E-value=3.6 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=24.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
..|+.|.+.+.+ ..+..-+..||..|+ .|-.|++.+
T Consensus 16 ~~C~~C~~~I~~------------------~~~~a~~~~~H~~CF--------~C~~C~~~L 51 (81)
T 1x6a_A 16 EFCHGCSLLMTG------------------PFMVAGEFKYHPECF--------ACMSCKVII 51 (81)
T ss_dssp CBCTTTCCBCCS------------------CCBCCTTCCBCTTSC--------BCTTTCCBC
T ss_pred CcCccCCCCcCc------------------eEEEECCceeccccC--------CccCCCCcc
Confidence 468888888753 122345788998885 577777665
No 145
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.98 E-value=2.8 Score=24.81 Aligned_cols=38 Identities=24% Similarity=0.597 Sum_probs=25.1
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+-|.+.+.+ ..+..-+..||..|+ +|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~~------------------~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD------------------RILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS------------------CCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc------------------eeEEECCccccHHhc--------CcccCCCccC
Confidence 3568888887743 122345788998886 5777876654
No 146
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=55.47 E-value=5.8 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=24.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 95 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~ 95 (118)
.+..|++|...|.- -......-..|.|.++..|-.
T Consensus 54 ~~~~C~~C~~~~g~-------------l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGM-------------LGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCST-------------TSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCccc-------------ccCCCCCCCCCCcccccccCC
Confidence 56789999999942 122335557799999988843
No 147
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=54.32 E-value=6.8 Score=31.70 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=20.0
Q ss_pred eeecCCCCcccHhHHHHHHh-----CCCCCcCCcc
Q 033510 80 VAWGVCNHAFHFHCISRWLK-----TRQVCPLDNS 109 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~ 109 (118)
+.--.|.-.||..|+.---. ..-.||.|+.
T Consensus 53 IqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 53 IECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred EEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 33456899999999943221 1246999974
No 148
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.04 E-value=4.2 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.524 Sum_probs=24.8
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. . .+..-+..||..|+ .|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~---------------~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG---------------E---VVSALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS---------------C---CEEETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEecc---------------c---eEEECCceeCccCC--------ccccCCCCCC
Confidence 468888888743 1 12345789999886 5777776653
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.07 E-value=6.5 Score=22.74 Aligned_cols=41 Identities=17% Similarity=0.441 Sum_probs=26.7
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
....|+-|.+.+.. .+. ++..-|..||..|+ .|-.|++.+.
T Consensus 10 ~~~~C~~C~~~I~~-------------~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAP-------------AEK---IVNSNGELYHEQCF--------VCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCS-------------TTT---CEEETTEEECTTTC--------CCTTTCCCCG
T ss_pred CCCCchhcCCccCC-------------Cce---EEEeCccEeccccC--------eECCCCCCCC
Confidence 34679999999853 111 11235778998886 5777776654
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.85 E-value=4.9 Score=23.02 Aligned_cols=40 Identities=18% Similarity=0.482 Sum_probs=25.2
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+.|.+.+.. .+ ..+..=+..||..|+ .|-.|++.+.
T Consensus 5 ~~~C~~C~~~I~~-------------~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVG-------------DG---AGVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCS-------------SS---CCEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCC-------------Cc---eEEEECCCeEcccCC--------cccccCCcCC
Confidence 3568889888753 11 122335778898885 5777776653
No 151
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.66 E-value=1.7 Score=25.01 Aligned_cols=23 Identities=39% Similarity=0.870 Sum_probs=16.6
Q ss_pred CC-CcccHhHHHHHHhC----CCCCcCCcc
Q 033510 85 CN-HAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 85 C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
|. ..||..|+. |.. .-.||.|++
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 699999997 443 336998864
No 152
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.62 E-value=1.6 Score=25.14 Aligned_cols=23 Identities=39% Similarity=0.940 Sum_probs=16.4
Q ss_pred CC-CcccHhHHHHHHhC----CCCCcCCcc
Q 033510 85 CN-HAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 85 C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
|. ..||..|+. |.. .-.||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999997 443 336888854
No 153
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=50.85 E-value=11 Score=22.32 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
+..|.+|...|.. . ...-.--.||++|+..|...
T Consensus 11 ~~~C~~C~~~F~~-------------~-~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSL-------------L-NRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBT-------------T-BCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCC-------------c-cccccCCCCCEEEcccccCC
Confidence 4689999999864 1 11123356999999999643
No 154
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=50.32 E-value=4.2 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=12.4
Q ss_pred CCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 86 NHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 86 ~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
+..||..|+ .|-.|++.+.
T Consensus 20 ~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 20 GKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp TEEEETTTC--------BCTTTCCBCC
T ss_pred CccccCCCC--------CccccCccCC
Confidence 777887775 4666665543
No 155
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.03 E-value=5.5 Score=23.30 Aligned_cols=37 Identities=19% Similarity=0.468 Sum_probs=25.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. + .+..-+..||..|+ .|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~---------------~---~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ---------------G---GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS---------------C---CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecC---------------c---EEEECCchhhhhhC--------CcccCCCcCC
Confidence 568888888743 1 12345789998886 5777776654
No 156
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.67 E-value=9.8 Score=22.04 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=27.9
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH-hCCCCCcCC
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLD 107 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~~~~CP~C 107 (118)
..|-.|...|.+ .....-..|++.|+.+|= -.+ ++-..||-|
T Consensus 16 ~~C~~C~~~~~~---------------~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD---------------QHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT---------------SEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCC---------------CccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 469999999853 111334789999999993 222 223468887
No 157
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.61 E-value=4.8 Score=23.59 Aligned_cols=37 Identities=16% Similarity=0.497 Sum_probs=24.7
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. + . +..-+..||..|+ .|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~---------------~--~-v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLE---------------N--Y-LSAMDTVWHPECF--------VCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCS---------------S--C-EEETTEEECTTTC--------BCSSSCCBSC
T ss_pred CccccCCCeecc---------------e--e-EEECCCeEecCcC--------ChhhCCCCCC
Confidence 568888888743 1 1 2335778998885 5777776654
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=48.48 E-value=2.1 Score=24.94 Aligned_cols=23 Identities=39% Similarity=0.863 Sum_probs=16.5
Q ss_pred CC-CcccHhHHHHHHhC----CCCCcCCcc
Q 033510 85 CN-HAFHFHCISRWLKT----RQVCPLDNS 109 (118)
Q Consensus 85 C~-H~FH~~Ci~~Wl~~----~~~CP~Cr~ 109 (118)
|. ..||..|+. |.. .-.||.|+.
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcccEecccCC--cCcCCCCCEECcCccc
Confidence 55 799999997 332 346998865
No 159
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.40 E-value=3.7 Score=31.73 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred eeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhC-------CCCCcCCcc
Q 033510 42 LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCPLDNS 109 (118)
Q Consensus 42 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP~Cr~ 109 (118)
.|..+.....|.+|...|.. . ...-.--.||++|+..|....+.. ..+|-.|-.
T Consensus 368 ~w~~~~~~~~c~~c~~~f~~-------------~-~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 368 TLVPVTHVMMCMNCGCDFSL-------------T-LRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cCCCcccCCcCCCcCCCCCC-------------c-chhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 45445566789999999864 1 001223569999999999876532 345777743
No 160
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=47.12 E-value=5.2 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=19.2
Q ss_pred ecCCCCcccHhHHHHHHhCCCCCcCCccCccccccCC
Q 033510 82 WGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118 (118)
Q Consensus 82 ~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~~~~ 118 (118)
-..|||.|-.. .....||.|..+ ++++.|
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~--~~~~~~ 163 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSK--VKLIPR 163 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCB--EEECCC
T ss_pred CCCCCCcccCC------CCCCcCCCCCCc--ceeCCc
Confidence 36799998643 223479999987 455443
No 161
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.54 E-value=6 Score=25.45 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=24.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
+.|+.|...+.. .+. ++..-+..||..|+ .|-.|++.+
T Consensus 9 ~~C~~C~~~I~~-------------~e~---~~~a~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 9 GLCASCDKRIRA-------------YEM---TMRVKDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCCSSSSCCCCT-------------TCC---CCCCSSCCCCTTTC--------BCTTTCCBC
T ss_pred CcccCCCCeecC-------------Cce---EEEECCcccccccC--------ccccCCCCC
Confidence 369999988853 111 11334778898885 466776655
No 162
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=45.29 E-value=1.4 Score=26.81 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=13.3
Q ss_pred CCCCcccHhHHHHHH
Q 033510 84 VCNHAFHFHCISRWL 98 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl 98 (118)
.|||.|+..|...|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 699999999998883
No 163
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.17 E-value=7.5 Score=22.85 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=24.5
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+.. .+ .++..=+..||..|+ .|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~-------------~~---~~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGH-------------DS---RELFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCS-------------SC---CBCCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCcccc-------------Cc---EEEEeCCccccccCC--------eecCCCCccC
Confidence 468888888752 11 122335788999886 4667766544
No 164
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.40 E-value=6.4 Score=23.46 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=25.1
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+.|.+.+.. .+. + ..-+..||..|+ .|-.|++.+.
T Consensus 15 ~~~C~~C~~~I~~-------------~e~--v--~a~~~~wH~~CF--------~C~~C~~~L~ 53 (82)
T 2co8_A 15 GDLCALCGEHLYV-------------LER--L--CVNGHFFHRSCF--------RCHTCEATLW 53 (82)
T ss_dssp SCBCSSSCCBCCT-------------TTB--C--CBTTBCCBTTTC--------BCSSSCCBCC
T ss_pred CCCCcccCCCccc-------------ceE--E--EECCCeeCCCcC--------EEcCCCCCcC
Confidence 3569999998853 111 1 235779999986 4666665443
No 165
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=43.27 E-value=12 Score=20.95 Aligned_cols=41 Identities=17% Similarity=0.408 Sum_probs=27.8
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
....|+.|...+.. .+ .++..=+..||..|+ .|-.|.+.+.
T Consensus 10 ~~~~C~~C~~~i~~--------------~e--~~~~~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 10 ASATCERCKGGFAP--------------AE--KIVNSNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TTCBCTTTCCBCCT--------------TC--EEEEETTEEEETTTS--------SCTTTCCCCG
T ss_pred CCccchhcCccccC--------------Cc--eEEEeCcCeeCcCCC--------cccCCCCCCC
Confidence 45679999999863 12 122245778999997 5777877654
No 166
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=43.25 E-value=5.7 Score=23.72 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=13.0
Q ss_pred HHHHhCCCCCcCCccCcccc
Q 033510 95 SRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 95 ~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
++||..--.||+|+.+..+.
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 34555566788888776654
No 167
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=42.62 E-value=12 Score=25.36 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=29.4
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHH-----hCCCCCcCCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----KTRQVCPLDNS 109 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----~~~~~CP~Cr~ 109 (118)
....| ||...... ....+.--.|...||..|+.--. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~--------------~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE--------------SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCT--------------TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCC--------------CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34558 99887532 11123335688999999995211 12457999975
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.86 E-value=8 Score=19.10 Aligned_cols=28 Identities=29% Similarity=0.631 Sum_probs=17.9
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI 94 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci 94 (118)
+.|+.|-...-. .+. + ..=|..||..|+
T Consensus 4 ~~C~~C~k~Vy~-------------~Ek--~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYP-------------TEK--V--NCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCG-------------GGC--C--CSSSSCCCGGGC
T ss_pred CcCCccCCEEec-------------cee--E--EECCeEecccCC
Confidence 568888887643 111 1 345789999884
No 169
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.82 E-value=7.2 Score=23.19 Aligned_cols=39 Identities=18% Similarity=0.447 Sum_probs=26.1
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
...|+-|-+.+.. +.. + ..-+..||.+|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~-------------~~~--v--~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKH-------------GQS--L--LALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSS-------------SCC--E--EETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCC-------------CeE--E--EECCcccccccC--------CcCcCCCCcC
Confidence 3569999999853 111 2 234788999886 5777776553
No 170
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.99 E-value=13 Score=26.74 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=24.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 97 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 97 (118)
.++.|.+|...|.. . ...-.--.||++|+..|-...
T Consensus 163 ~~~~C~~C~~~F~~-------------~-~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGV-------------M-TRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBT-------------T-BCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCc-------------c-ccccccCCCcCEeChhhcCCc
Confidence 35689999999964 1 111233679999999996543
No 171
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=40.94 E-value=7.1 Score=20.17 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=8.3
Q ss_pred CCCcCCccCcc
Q 033510 102 QVCPLDNSEWE 112 (118)
Q Consensus 102 ~~CP~Cr~~~~ 112 (118)
..||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 36999988654
No 172
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.42 E-value=11 Score=22.74 Aligned_cols=38 Identities=21% Similarity=0.522 Sum_probs=24.6
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
...|+-|.+.+.. . + . +..-+..||..|+ .|-.|.+.+
T Consensus 15 ~~~C~~C~~~I~~-------------~-~--~-v~a~~~~~H~~CF--------~C~~C~~~L 52 (91)
T 2d8y_A 15 RETCVECQKTVYP-------------M-E--R-LLANQQVFHISCF--------RCSYCNNKL 52 (91)
T ss_dssp SCBCTTTCCBCCT-------------T-S--E-EECSSSEEETTTC--------BCTTTCCBC
T ss_pred CCcCccCCCccCC-------------c-e--e-EEECCCEECCCCC--------eeCCCCCCC
Confidence 3579999999854 1 2 1 2456778898885 355665544
No 173
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.37 E-value=10 Score=21.61 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=25.8
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+-|.+.+.. .++. .++..-+..||..|+ .|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~------------~~~~--~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISG------------LGGT--KYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCC------------SSSC--SCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccC------------CCCc--ceEEECCcccCcccC--------EeccCCCcCC
Confidence 569999988752 0011 122346789999886 5777776553
No 174
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=39.57 E-value=17 Score=22.35 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=22.9
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
+...|.+|...|.. . ...-.--.||++|+..|...
T Consensus 8 ~~~~C~~C~~~F~~-------------~-~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTL-------------F-KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCS-------------S-SCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccC-------------c-cccccCCCCCCEEChhHcCC
Confidence 34579999999854 1 11123356888998888654
No 175
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=39.42 E-value=7.1 Score=24.14 Aligned_cols=33 Identities=27% Similarity=0.727 Sum_probs=21.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
..|.||.+.=...|+.|. ...|.-.||..|-.+
T Consensus 18 l~C~iC~~~~~GAciqC~--------------~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 18 LTCYLCKQKGVGASIQCH--------------KANCYTAFHVTCAQK 50 (87)
T ss_dssp CCBTTTTBCCSSCEEECS--------------CTTTCCEEEHHHHHH
T ss_pred CCCcCCCCCCCcEeEecC--------------CCCCCCcCcHHHHHH
Confidence 569999764112222221 256899999999865
No 176
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=39.16 E-value=40 Score=19.19 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=30.0
Q ss_pred CcceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 29 PKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 29 ~~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
.-+|....+... ..|..|...|-. -......-..|+-..|..|...
T Consensus 13 ~H~F~~~~~~~p---------t~C~~C~~~l~G-------------l~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 13 QHNFEVWTATTP---------TYCYECEGLLWG-------------IARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp CCCEEEEECSSC---------CCCTTTCCCCCS-------------SCCEEEEETTTCCEECTTHHHH
T ss_pred CcccEeeeCCCC---------cChhhcChhhcc-------------cCcceeEcCCCCCeeCHHHHhh
Confidence 455555554433 459999888742 1223345567999999999876
No 177
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.93 E-value=22 Score=20.88 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=23.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
..|..|.+.|-. -......-..|+-.+|..|...
T Consensus 29 t~C~~C~~~lwG-------------l~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 29 KFCDVCARMIVL-------------NNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp EECSSSCCEECH-------------HHHEEEEESSSCCEECTTTTGG
T ss_pred cCchhcChhhcc-------------ccCCccccCCCCCccChhHHhh
Confidence 459999888743 1122345567999999999764
No 178
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.43 E-value=5.4 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=14.0
Q ss_pred HHHHhCCCCCcCCccCcccc
Q 033510 95 SRWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 95 ~~Wl~~~~~CP~Cr~~~~~~ 114 (118)
++||..--.||+|+.+..+.
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 45666667788888876654
No 179
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.80 E-value=4.4 Score=23.92 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=25.2
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
....|+.|.+.+.. +. . +..-+..||.+|+ .|-.|++.+.
T Consensus 6 ~~~~C~~C~~~I~~-------------~~---~-~~a~~~~~H~~CF--------~C~~C~~~L~ 45 (81)
T 1a7i_A 6 GGNKCGACGRTVYH-------------AE---E-VQCDGRSFHRCCF--------LCMVCRKNLD 45 (81)
T ss_dssp --CBCSSSCCBCSS-------------TT---E-EEETTEEEESSSE--------ECSSSCCEEC
T ss_pred CCCcCcCcCccccC-------------ce---e-EEeCCcccccccC--------ccCCCCCCCC
Confidence 34679999998853 11 1 2335788998886 4777766543
No 180
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.50 E-value=21 Score=22.74 Aligned_cols=25 Identities=4% Similarity=-0.213 Sum_probs=11.7
Q ss_pred CcccHhHHHHHHhCCCCCcCCccCc
Q 033510 87 HAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 87 H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
..|+..|..+-+.....|-.|....
T Consensus 55 ~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 55 MILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp EEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred eeecHHHHHHHcCCCCccccCCCCc
Confidence 3455555544443333455555443
No 181
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.36 E-value=12 Score=21.72 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=25.5
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+.|.+.+... +... . +..-+..||..|+ .|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~~------------g~~~-~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGL------------TGAK-F-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTT------------TTCC-E-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCC------------CCce-e-EEECCcccCcccC--------ChhhCCCcCC
Confidence 5699999987520 0111 2 2345789999996 5777766543
No 182
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.28 E-value=14 Score=26.20 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=24.1
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
++..|.+|...|.. . ...-.--.||++|+..|...
T Consensus 160 ~~~~C~~C~~~F~~-------------~-~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTF-------------T-NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCS-------------S-SCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCC-------------c-ccccccCCcCCEEChHHhCC
Confidence 35789999999854 1 11123356999999999654
No 183
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.66 E-value=16 Score=23.06 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=22.1
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
..|+-|.+.+.. . ..+..-+..||..|+ .|-.|+..+
T Consensus 4 ~~C~~C~~~I~~--------------~---~~~~a~~~~wH~~CF--------~C~~C~~~L 40 (114)
T 1j2o_A 4 LTCGGCQQNIGD--------------R---YFLKAIDQYWHEDCL--------SCDLCGCRL 40 (114)
T ss_dssp BCBSSSCSCBCS--------------S---EEEECSSSEECTTTC--------CCSSSCSCC
T ss_pred CCCcCCCCeeCC--------------c---EEEEECchhHHHhcC--------cccccCCch
Confidence 457778777743 1 122335677887775 566666654
No 184
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=35.66 E-value=19 Score=21.05 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=27.8
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHHHHh---CCCCCcCCcc
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNS 109 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~ 109 (118)
...| ||...+.. ...+.--.|...||..|+.--.. ..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~---------------~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAG---------------RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTT---------------CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCC---------------CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3458 99887532 22234456899999999864221 1346888854
No 185
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.48 E-value=11 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=20.6
Q ss_pred eeecCCCCcccHhHHHHHH----hCCCCCcCCccC
Q 033510 80 VAWGVCNHAFHFHCISRWL----KTRQVCPLDNSE 110 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl----~~~~~CP~Cr~~ 110 (118)
+.--.|...||..|+.--. ...-.||.|+..
T Consensus 32 I~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 32 LACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred EECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4445688999999986422 124569998653
No 186
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.03 E-value=17 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=11.6
Q ss_pred CCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 86 NHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 86 ~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
|..|+..|..+ .....|..|.+.+.
T Consensus 53 g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 53 NKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CEEEChhHhhh--hcCCccccCCCccc
Confidence 34455555422 11345666665543
No 187
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=34.92 E-value=3.5 Score=25.27 Aligned_cols=18 Identities=22% Similarity=0.761 Sum_probs=14.0
Q ss_pred cCCCCcccHhHHHHHHhC
Q 033510 83 GVCNHAFHFHCISRWLKT 100 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~ 100 (118)
..|++.|+..|-..|-+.
T Consensus 47 ~~C~~~FC~~C~~~w~~~ 64 (86)
T 2ct7_A 47 PQCHQTFCVRCKRQWEEQ 64 (86)
T ss_dssp TTTCCEECSSSCSBCCTT
T ss_pred CCCCCccccccCCchhhc
Confidence 459999999998888433
No 188
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.87 E-value=25 Score=24.32 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=15.0
Q ss_pred CCCCcccHhHHHHHHhC
Q 033510 84 VCNHAFHFHCISRWLKT 100 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl~~ 100 (118)
.|...|+..||...+..
T Consensus 98 ~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TTCCEEEHHHHHHHTCT
T ss_pred CCCCchhHHHHHHhcCH
Confidence 58899999999999865
No 189
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=34.29 E-value=4.1 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=12.1
Q ss_pred HHHhCCCCCcCCccCcccc
Q 033510 96 RWLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 96 ~Wl~~~~~CP~Cr~~~~~~ 114 (118)
+||..-..||.|+.+.++.
T Consensus 5 ~~lL~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEER 23 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEE
T ss_pred HHHHhheeCCCCCCcceec
Confidence 3444456788888776543
No 190
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=33.85 E-value=59 Score=18.33 Aligned_cols=34 Identities=15% Similarity=0.426 Sum_probs=23.4
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
..|..|...|-. -......-..|+-+.|..|...
T Consensus 24 t~C~~C~~~l~G-------------l~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 24 TFCEHCGTLLWG-------------LARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CBCSSSCCBCCC-------------SSSCSEEESSSCCEECTTTTTT
T ss_pred cCchhcChhhee-------------cCCcccccCCCCCccCHhHHhh
Confidence 459999888742 1222344567999999999754
No 191
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.57 E-value=59 Score=19.60 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=9.1
Q ss_pred ccccccccchhh
Q 033510 50 DNCAICRNHIMD 61 (118)
Q Consensus 50 ~~C~IC~~~~~~ 61 (118)
..|..|...+..
T Consensus 26 nRC~~CrKkvgL 37 (74)
T 1wfl_A 26 NRCFMCRKKVGL 37 (74)
T ss_dssp TBCSSSCCBCGG
T ss_pred CcChhhCCcccc
Confidence 459999988654
No 192
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.12 E-value=82 Score=18.82 Aligned_cols=48 Identities=15% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCCcceeEeeceeeeeeecCCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 27 KKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 27 ~~~~~~~i~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
...-+|....+... ..|..|...|-. -......-..|+-++|..|...
T Consensus 15 ~~~H~F~~~~~~~p---------t~C~~C~~~l~G-------------l~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 15 RSKHKFKIHTYGSP---------TFCDHCGSLLYG-------------LIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp TTSCCCEEECCSSC---------CBCSSSCCBCCC-------------SSSCEEECSSSCCEEETTTTTT
T ss_pred CCCcccEeeeCCCC---------cCCcccCccccc-------------cccCCCcCCCcCCccCHhHHhh
Confidence 34456666555433 459999887742 1223344567999999999754
No 193
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.23 E-value=1.1e+02 Score=20.22 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.0
Q ss_pred Ccccccccccchhh
Q 033510 48 VVDNCAICRNHIMD 61 (118)
Q Consensus 48 ~~~~C~IC~~~~~~ 61 (118)
....|--|.+.|..
T Consensus 26 gRA~CK~C~~kI~K 39 (134)
T 2cs2_A 26 NRSTCKGCMEKIEK 39 (134)
T ss_dssp SCCBCSSSCCBCCT
T ss_pred CCccchhcCCcccC
Confidence 45679999998864
No 194
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.79 E-value=18 Score=20.74 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=25.8
Q ss_pred ccccccccchhhhhHHHhhhcccCCC-CcceeeecCCCCcccHhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATS-EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+-|.+.+.. .+ .. ..+..=+..||..|+ .|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~------------~g~~~--~~~~a~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITG------------FGKGS--SVVAYEGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCC------------CSSCC--CEEEETTEEEETTTC--------BCSSSCCBCT
T ss_pred ccCcccCCcccC------------CCCCc--eeEEECcceeCcccC--------EehhcCCCCC
Confidence 568888888752 00 11 122335789999986 5888877654
No 195
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.71 E-value=5.1 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=11.0
Q ss_pred HHhCCCCCcCCccCcccc
Q 033510 97 WLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 97 Wl~~~~~CP~Cr~~~~~~ 114 (118)
||..--.||+|+.+..+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 344455688887766554
No 196
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.77 E-value=14 Score=20.74 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=24.7
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCccc--HhHHHHHHhCCCCCcCCccCcc
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH--FHCISRWLKTRQVCPLDNSEWE 112 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH--~~Ci~~Wl~~~~~CP~Cr~~~~ 112 (118)
..|+-|.+.+.. ++. .+..-+..|| ..|+ +|-.|++++.
T Consensus 3 ~~C~~C~~~I~~-------------~~~---~v~a~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDP-------------EVQ---RVTYNNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECT-------------TSC---EEEETTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeecc-------------Cce---EEEECCCccCCCCCCE--------ECCCCCCcCC
Confidence 358888888752 122 1233578999 8885 5777766553
No 197
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.87 E-value=41 Score=26.48 Aligned_cols=16 Identities=19% Similarity=0.756 Sum_probs=14.7
Q ss_pred CCCCcccHhHHHHHHh
Q 033510 84 VCNHAFHFHCISRWLK 99 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl~ 99 (118)
.|...|+..||...+.
T Consensus 112 ~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVG 127 (386)
T ss_dssp TCCCEECHHHHHHHTC
T ss_pred CCCcchHHHHHHHhcC
Confidence 7889999999999984
No 198
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.97 E-value=5.2 Score=23.83 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=8.4
Q ss_pred CCCCcCCccCcccc
Q 033510 101 RQVCPLDNSEWEFQ 114 (118)
Q Consensus 101 ~~~CP~Cr~~~~~~ 114 (118)
--.||+|+.+..+.
T Consensus 8 iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 8 ILVCPLCKGPLVFD 21 (68)
T ss_dssp ECBCTTTCCBCEEE
T ss_pred heECCCCCCcCeEe
Confidence 34577777665543
No 199
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.55 E-value=5.7 Score=23.76 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=10.5
Q ss_pred HHhCCCCCcCCccCcccc
Q 033510 97 WLKTRQVCPLDNSEWEFQ 114 (118)
Q Consensus 97 Wl~~~~~CP~Cr~~~~~~ 114 (118)
||..--.||+|+.+..+.
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCBCTTTCCBEEEE
T ss_pred HHhhheECCCCCCcCEEe
Confidence 333445677777765543
No 200
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=25.18 E-value=90 Score=17.46 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=23.9
Q ss_pred cccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 49 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 49 ~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
-..|..|.+.|-. -......-..|+-+.|..|...
T Consensus 20 pt~C~~C~~~l~G-------------l~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWG-------------LVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCS-------------SSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhc-------------cCceeeECCCCCCeEchhHhhh
Confidence 3569999887642 1223345567999999999754
No 201
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.83 E-value=56 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=25.0
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
....|.+|...|.. -......--.||.++|..|..+
T Consensus 356 ~~t~C~~C~~~~~g-------------~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRG-------------TFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCS-------------SSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccchhce-------------eCCCCCCCCCCcCccchhhhhh
Confidence 44679999998842 1222344567999999999753
No 202
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=23.97 E-value=40 Score=19.73 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=20.8
Q ss_pred eeecCCCCcccHhHHHHHHh-----CCCCCcCCccC
Q 033510 80 VAWGVCNHAFHFHCISRWLK-----TRQVCPLDNSE 110 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~~ 110 (118)
+.--.|.-.||..|+.--.. ..-.||.|+..
T Consensus 26 I~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 26 IECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33456889999999953221 23569999753
No 203
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.74 E-value=88 Score=16.30 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=23.6
Q ss_pred ccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhHHHH
Q 033510 50 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 96 (118)
Q Consensus 50 ~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 96 (118)
..|..|...|-. -.+....-..|+-+.|..|...
T Consensus 12 t~C~~C~~~l~g-------------~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 12 TFCDHCGSLLWG-------------LVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CBCTTTCCBCCS-------------SSSCEEEETTTCCEECHHHHTT
T ss_pred CCcCCCCceeec-------------cCCccCEeCCCCCeECHHHhhh
Confidence 459999887742 1233455577999999999753
No 204
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.25 E-value=34 Score=21.85 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=16.1
Q ss_pred cCCCCcccHhHHHHHHhCCC-CCcCCccC
Q 033510 83 GVCNHAFHFHCISRWLKTRQ-VCPLDNSE 110 (118)
Q Consensus 83 ~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~ 110 (118)
..|||.|-.. .... .||.|..+
T Consensus 77 ~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 77 KDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSSSCEECSC------CSTTCCCSSSSSC
T ss_pred CCCCCEEeCC------CCCCCcCccccCC
Confidence 6789998762 3356 79999775
No 205
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=23.18 E-value=22 Score=21.18 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=8.7
Q ss_pred CCCcCCccCcc
Q 033510 102 QVCPLDNSEWE 112 (118)
Q Consensus 102 ~~CP~Cr~~~~ 112 (118)
..||+|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999998764
No 206
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.02 E-value=30 Score=20.55 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=19.1
Q ss_pred CCCCcccHhHHHHHHh---------CCCCCcCCccC
Q 033510 84 VCNHAFHFHCISRWLK---------TRQVCPLDNSE 110 (118)
Q Consensus 84 ~C~H~FH~~Ci~~Wl~---------~~~~CP~Cr~~ 110 (118)
.|...||..|+.---. ..-.||.|+..
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 6999999999853211 24569999754
No 207
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=22.91 E-value=36 Score=23.08 Aligned_cols=13 Identities=46% Similarity=0.999 Sum_probs=8.3
Q ss_pred cccccccccchhh
Q 033510 49 VDNCAICRNHIMD 61 (118)
Q Consensus 49 ~~~C~IC~~~~~~ 61 (118)
...|+.|.+.+..
T Consensus 60 ~~~C~~C~~~I~~ 72 (182)
T 2jtn_A 60 IPMCAGCDQHILD 72 (182)
T ss_dssp CCBCBTSSSBCCC
T ss_pred CCcCccCCCCccC
Confidence 3567777777643
No 208
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.75 E-value=26 Score=23.49 Aligned_cols=24 Identities=4% Similarity=0.009 Sum_probs=11.6
Q ss_pred CCcccHhHHHHHHhCCCCCcCCccCc
Q 033510 86 NHAFHFHCISRWLKTRQVCPLDNSEW 111 (118)
Q Consensus 86 ~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 111 (118)
|..|+..|..+-+ ...|..|...+
T Consensus 52 g~~yC~~~y~~~f--~~~C~~C~~~I 75 (169)
T 2rgt_A 52 ESVYCKDDFFKRF--GTKCAACQLGI 75 (169)
T ss_dssp SCEECHHHHHHHH--SCBCTTTCCBC
T ss_pred Ceeeecccccccc--ccccccccccc
Confidence 3445555544322 34466665544
No 209
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.25 E-value=64 Score=20.08 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=17.6
Q ss_pred CCCCcccHhHHH------HHHhC-----CCCCcCCcc
Q 033510 84 VCNHAFHFHCIS------RWLKT-----RQVCPLDNS 109 (118)
Q Consensus 84 ~C~H~FH~~Ci~------~Wl~~-----~~~CP~Cr~ 109 (118)
.|+..||..|+. +-|.. ...||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 499999999952 12222 367999964
No 210
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.21 E-value=50 Score=20.03 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCCcccccccccchhhhhHHHhhhcccCCCCcceeeecCCCCcccHhH
Q 033510 46 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 93 (118)
Q Consensus 46 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~C 93 (118)
...+..|+.|.+.|.- -......-..|.|..+..|
T Consensus 22 ~~~~r~CarC~~~LG~-------------l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGR-------------LSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSS-------------SCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccc-------------cccCCCcCcccChhhcccc
Confidence 3466889999999864 1111233466888877776
No 211
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.33 E-value=24 Score=19.01 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=7.6
Q ss_pred eeecCCCCcccH
Q 033510 80 VAWGVCNHAFHF 91 (118)
Q Consensus 80 ~~~~~C~H~FH~ 91 (118)
++-..||.+|-.
T Consensus 25 lvC~~CG~v~~e 36 (50)
T 1pft_A 25 IVCAKCGYVIEE 36 (50)
T ss_dssp EEESSSCCBCCC
T ss_pred EECcccCCcccc
Confidence 555677777643
No 212
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=20.98 E-value=55 Score=19.40 Aligned_cols=30 Identities=17% Similarity=0.503 Sum_probs=20.3
Q ss_pred CcccccccccchhhhhHHHhhhcccCCCCcceeeecCC-CCcccHhHHHH
Q 033510 48 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC-NHAFHFHCISR 96 (118)
Q Consensus 48 ~~~~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~H~FH~~Ci~~ 96 (118)
+..-|.||.++-. +.-+.| |-.|+..|...
T Consensus 7 e~pWC~ICneDAt-------------------lrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNEDAT-------------------LRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSCCC-------------------EEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCCCe-------------------EEecCCCCceehHHHHHH
Confidence 3345999999843 344556 56888888665
No 213
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.60 E-value=35 Score=23.49 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=16.2
Q ss_pred eeecCCCCcccHhHHHHHHhCCCCCcCCccC
Q 033510 80 VAWGVCNHAFHFHCISRWLKTRQVCPLDNSE 110 (118)
Q Consensus 80 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 110 (118)
-+-..|||++-. ..-..||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 345779998862 234589999753
Done!