BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033513
MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE
AEIARQEARLKMEKENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK

High Scoring Gene Products

Symbol, full name Information P value
AT2G17350 protein from Arabidopsis thaliana 4.7e-32

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033513
        (117 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2827566 - symbol:AT2G17350 "AT2G17350" species...   351  4.7e-32   1


>TAIR|locus:2827566 [details] [associations]
            symbol:AT2G17350 "AT2G17350" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AY088900
            EMBL:BT004709 EMBL:AK117249 IPI:IPI00539078 RefSeq:NP_565413.1
            UniGene:At.40155 IntAct:Q8L8N3 PaxDb:Q8L8N3 PRIDE:Q8L8N3
            EnsemblPlants:AT2G17350.1 GeneID:816242 KEGG:ath:AT2G17350
            TAIR:At2g17350 eggNOG:NOG303232 HOGENOM:HOG000242897
            InParanoid:Q8L8N3 OMA:CLRFAKA PhylomeDB:Q8L8N3
            ProtClustDB:CLSN2688194 Genevestigator:Q8L8N3 Uniprot:Q8L8N3
        Length = 117

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 76/117 (64%), Positives = 79/117 (67%)

Query:     1 MSLRIKTVVDKFVQELKEALDADIQDRIMKEREMQSYIXXXXXXXXXXXXXWKAELSXXX 60
             MSLRIK VVDKFV+ELK+ALDADIQDRIMKEREMQSYI             WKAELS   
Sbjct:     1 MSLRIKLVVDKFVEELKQALDADIQDRIMKEREMQSYIEEREREVAEREAAWKAELSRRE 60

Query:    61 XXXXXXXXXXXXXXXXXXXXXSVLMGTASNQDNQDGALEITVSGEKYRCLRFAKAKK 117
                                  SVLMGTASNQDNQDGALEITVSGEKYRCLRF+KAKK
Sbjct:    61 TEIARQEARLKMERENLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFSKAKK 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.129   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117        80   0.00091  102 3  10 22  0.40    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  120 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.57u 0.25s 9.82t   Elapsed:  00:00:01
  Total cpu time:  9.57u 0.25s 9.82t   Elapsed:  00:00:01
  Start:  Thu May  9 16:28:43 2013   End:  Thu May  9 16:28:44 2013

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