BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033514
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex
Length = 117
Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/92 (80%), Positives = 82/92 (89%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+P+RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L EKAIFIFV++ L
Sbjct: 26 FPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 85
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 86 PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 117
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8
Length = 116
Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/92 (80%), Positives = 82/92 (89%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+P+RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L EKAIFIFV++ L
Sbjct: 25 FPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 84
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 85 PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|B Chain B, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 119
Score = 155 bits (392), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/92 (80%), Positives = 82/92 (89%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+P+RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L EKAIFIFV++ L
Sbjct: 28 FPNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 87
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 88 PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|C Chain C, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|2ZPN|D Chain D, The Crystal Structure Of Saccharomyces Cerevisiae Atg8-
Atg19(412-415) Complex
pdb|3VXW|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg8
Complexed With Atg32 Aim
Length = 119
Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+ +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L EKAIFIFV++ L
Sbjct: 28 FKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 87
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 88 PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8
Length = 119
Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+ +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L EKAIFIFV++ L
Sbjct: 27 FKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 86
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 87 PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex
Length = 118
Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 81/92 (88%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+ +RIPVI EKAE+SDIP IDK+KYLVPADLTVGQFVYVIRKRI L EKAIFIFV++ L
Sbjct: 27 FKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTL 86
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct: 87 PPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16
pdb|1EO6|B Chain B, Crystal Structure Of Gate-16
Length = 117
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 75/92 (81%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEK S I IDK+KYLVP+D+TV QF+++IRKRI+L +EKAIF+FVD +
Sbjct: 25 YPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTV 84
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
P + M +Y+++KDEDGFLYV YSGENTFG
Sbjct: 85 PQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
pdb|3M95|B Chain B, Crystal Structure Of Autophagy-Related Protein Atg8 From
The Silkworm Bombyx Mori
Length = 125
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 72/92 (78%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEKA ++ + +DKKKYLVP+DLTVGQF ++IRKRI L E A+F FV+NV+
Sbjct: 33 YPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVI 92
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A M ++Y E DED FLY+ +S EN +G
Sbjct: 93 PPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 124
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEKA ++ I +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+
Sbjct: 27 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 86
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A M +Y E +ED FLY+ YS E+ +G
Sbjct: 87 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap
pdb|1KLV|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
pdb|1KM7|A Chain A, Solution Structure And Backbone Dynamics Of Gabarap, Gabaa
Receptor Associated Protein
Length = 117
Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEKA ++ I +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+
Sbjct: 25 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 84
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A M +Y E +ED FLY+ YS E+ +G
Sbjct: 85 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 72/92 (78%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEKA ++ I +DKKKYLVP+DLTVGQF ++IRKRI L AE A+F FV+NV+
Sbjct: 27 YPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 86
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
PPT A M +Y E +ED FLY+ YS E+ +G
Sbjct: 87 PPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 118
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8
pdb|3H9D|B Chain B, Crystal Structure Of Trypanosoma Brucei Atg8
Length = 119
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 72/92 (78%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
+PDR+P+I EK SDI +D+ K+LVP+DLTVGQFV V+RKR++L AE A+F++ ++ +
Sbjct: 28 HPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTV 87
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
P+ A M+ IY + KDEDGFLY+ YSGE TFG
Sbjct: 88 LPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure
Length = 119
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 70/89 (78%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L E A+F FV+N +
Sbjct: 29 YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTI 88
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYSGEN 114
PPT A M +Y++ +ED FLYV YS E+
Sbjct: 89 PPTSATMGQLYEDNHEEDYFLYVAYSDES 117
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
pdb|2R2Q|B Chain B, Crystal Structure Of Human Gamma-Aminobutyric Acid
Receptor- Associated Protein-Like 1 (Gabarap1), Isoform
Cra_a
Length = 110
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 68/86 (79%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85
YPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L E A+F FV+N +
Sbjct: 24 YPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTI 83
Query: 86 PPTGAIMSTIYDEKKDEDGFLYVTYS 111
PPT A M +Y++ +ED FLYV YS
Sbjct: 84 PPTSATMGQLYEDNHEEDYFLYVAYS 109
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|B Chain B, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
pdb|4EOY|C Chain C, Plasmodium Falciparum Atg8 In Complex With Plasmodium
Falciparum Atg3 Peptide
Length = 128
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 73/101 (72%), Gaps = 9/101 (8%)
Query: 26 YPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSA---------EKA 76
YP+RIPV++E+A RS++P I+KKK+LVP ++ VG+F +++ + I SA E+
Sbjct: 28 YPNRIPVVIERANRSNLPIIEKKKFLVPMNMLVGEFKFILHQHINQSAYGSNMKLFRERT 87
Query: 77 IFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
I++FV+N++P TG +M +Y+ KDEDG+LY+ YS E++ G
Sbjct: 88 IYLFVNNIVPKTGLLMQDLYEMYKDEDGYLYMEYSSESSLG 128
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c
Length = 128
Score = 88.6 bits (218), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAERSD-IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN- 83
+P++IPV+VE+ R +P +DK K+LVP +LT+ QF+ +IR R+ L A +A ++ V+N
Sbjct: 35 FPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNK 94
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
L A M+ IY + KDEDGF+Y+TY+ + TFG
Sbjct: 95 SLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 128
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light
Chain-3
Length = 120
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
+P +IPVI+E+ + +P +DK K+LVP + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 27 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 86
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
+ +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct: 87 SMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex
pdb|2ZJD|C Chain C, Crystal Structure Of Lc3-P62 Complex
Length = 130
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
+P +IPVI+E+ + +P +DK K+LVP + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 32 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
+ +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct: 92 SMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure
Length = 121
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
+P +IPVI+E+ + +P +DK K+LVP + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 28 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 87
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
+ +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct: 88 SMVSVSTPISEVYESERDEDGFLYMVYASQETFG 121
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex
pdb|2ZZP|B Chain B, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124)
Complex
Length = 129
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
+P +IPVI+E+ + +P +DK K+LVP + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 32 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
+ +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct: 92 SMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3
pdb|2Z0D|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex
Length = 125
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
+P +IPVI+E+ + +P +DK K+LVP + + + + +IR+R++L+A +A F+ V+ +
Sbjct: 32 HPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
+ +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct: 92 SMVSVSTPISEVYESERDEDGFLYMVYASQETFG 125
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
pdb|3ECI|B Chain B, Microtubule-Associated Protein 1 Light Chain 3 Alpha
Isoform A (Map1alc3)
Length = 122
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 26 YPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N 83
+P +IPVI+E+ + +P +DK K+LVP + + + V +IR+R++L+ +A F+ V+ +
Sbjct: 28 HPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQH 87
Query: 84 VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 117
+ ++ IY+++KDEDGFLY+ Y+ + TFG
Sbjct: 88 SMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 121
>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDK|D Chain D, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
pdb|4GDL|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex
With An N- Terminal Fragment Of Atg16l1
Length = 91
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 40 SDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPT-GAIMSTIYDE 98
D P + KK+ V T+ + I+K +KL A + +FI+V+ P+ + T+Y E
Sbjct: 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLY-E 72
Query: 99 KKDEDGFLYVTYSGENTFG 117
DG L + Y +G
Sbjct: 73 CFGSDGKLVLHYCKSQAWG 91
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 35 EKAERSDI-PTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS 93
E E S+I PT+ KY+ P V F + + E+ + F+ N PPT ++
Sbjct: 85 EPGENSEILPTL---KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLG 141
Query: 94 T 94
T
Sbjct: 142 T 142
>pdb|1F3J|A Chain A, Histocompatibility Antigen I-Ag7
pdb|1F3J|D Chain D, Histocompatibility Antigen I-Ag7
Length = 182
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 37 AERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 87
AE+ ++ + K+ PA Q + + L + FVDN+ PP
Sbjct: 66 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 116
>pdb|1ES0|A Chain A, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
pdb|3CUP|A Chain A, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
pdb|3MBE|A Chain A, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|E Chain E, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 190
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 37 AERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 87
AE+ ++ + K+ PA Q + + L + FVDN+ PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
>pdb|1IAO|A Chain A, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
pdb|2IAD|A Chain A, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 194
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 37 AERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPP 87
AE+ ++ + K+ PA Q + + L + FVDN+ PP
Sbjct: 69 AEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119
>pdb|3HKP|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
Protocatechuate
Length = 280
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 29 RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
R +I ++ R +I TI Y +P D GQF+
Sbjct: 175 RGTIIADEEGRYEITTIQPAPYQIPTDGPTGQFI 208
>pdb|3HGI|A Chain A, Crystal Structure Of Catechol 1,2-Dioxygenase From The
Gram- Rhodococcus Opacus 1cp
pdb|3HHY|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
Catechol
pdb|3HJ8|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
4-Chlorocatechol
pdb|3HJQ|A Chain A, Crystal Structure Of Catechol 1,2-Dioxygenase From
Rhodococc 1cp In Complex With 3-Methylcatechol
pdb|3HJS|A Chain A, Crystal Structure Of Catechol 1,2-Dioxygenase From
Rhodococc 1cp In Complex With 4-Methylcatechol
pdb|3I4V|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
3-Chlorocatechol
pdb|3HHX|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
Pyrogallol
Length = 280
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 29 RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
R +I ++ R +I TI Y +P D GQF+
Sbjct: 175 RGTIIADEEGRYEITTIQPAPYQIPTDGPTGQFI 208
>pdb|3I4Y|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
3,5-Dichlorocatechol
pdb|3I51|A Chain A, Crystal Structure Determination Of Catechol
1,2-Dioxygenase Rhodococcus Opacus 1cp In Complex With
4,5-Dichlorocatechol
Length = 270
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 29 RIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFV 62
R +I ++ R +I TI Y +P D GQF+
Sbjct: 165 RGTIIADEEGRYEITTIQPAPYQIPTDGPTGQFI 198
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 70 KLSAEKAIFIFVDNVLPPTGAIMSTIY 96
K+S +K +F +++P T I+STIY
Sbjct: 228 KISGKKVNVVFTPHLVPXTRGILSTIY 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,871,770
Number of Sequences: 62578
Number of extensions: 99156
Number of successful extensions: 216
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 37
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)